>input_sequence_77974
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---------------------------------------------------ATGGCGTCGCTCGTCGCCGTCCAGCCGGT
CGCCGTGAGGGGCCTGGCCGGCAGCTCCATCTCCGGCCGCAAGCTCGCCGTCCGGCCCGCCTCCGCCGCCGTCTCCCGCT
CCACGCGCAGGTACTT---A----ACACGACTTACTAA-----CACACGTACCAT-------CTAGAGCAACAGATCGTG
ACCAGCTCCGGCA--CGTGAACGCAGGGCTCGCGGGGCGGCGGTGGTGGCCAAGTACGGGGAGAAGAGCGTCTACTTCGA
CCTGGACGACATCGCCAACACGACGGGGCAGTGGGACCTGTACGGCAGCGACGCGGCGTCGCCCTACAACGGCCTGCAGA
GCAAGTTCTTCAACACCTTCGCCGCGCCCTTCACCAAGCGGGGGCTGCTGCTCAAGGTGCTGCTGCTCGGCGGCGGCTCG
CTGCTCGCCTACGTCAGCGCCACCGCCTCCCCCGACCTGCTCCCCATCAAGAAGGGGCCCCAGCTGCCGCCCACCCCGGG
ACCACGCGGCAAGATCTAA-------------------------------------------------------------
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--
>chr1D_1_TraesCS1D01G400100
TAATCTCATATTCATATTCTACATTTTTTTAATCAAATTTCATATATCACATGTTCAAATCGGAGTTACGATTTAAAAGA
TATGGATGATTTAAAAAAACATTGTTTGACTTAAATATGATCCGCGGATGAATTACCTAAATCATCAGGGGGGTTTTCAA
AAAACGTAAAATAACAGTTCGGGTGTGACTTAAATCCGGACTGCGGGTTGATTTCAGCAAAACACATGGACTTTTGTGTA
AAATATGAAAAAATGATTCGTTTTAACTTAAAACAAGACTGCGGGTTGAATTCTCTGAAATAGAGGGACTTTTCTGAAAA
ATGGCATGACGGACGAAAAAAACCCAACTTGCTTTATTATATTAGGTAAAGATATGTTGTGTGCATAGATGTTACGGTTC
TATGTACTGCACGTACTCACATGCTTAGGTATCGGTGTATGAGTTGCATAGTGTGATTGTCATGCTTATTATCTACTCGT
GGATTAGATTAATAAAAAATGTGCTAATATATCCAGCACGATCTCGATCTTGCCCGGCCGTATGGGTATCGCGTTGTGTT
GGTGTACATACCCTCGCCATTTAACGAACGAAATCAATGTGTTGATGTATATCGATCTCTCTTTAATTTCCTTGAGCAAA
GATGATCCGTGCCCGTGCCCGTGCACGCGCTGTCCTAGCAAGCCTCGTGGGCCCACAGTATCTCTACGAGCAATCCTGTC
GGCGGCACGCTCGAACGGACGGCGAGATCTCCTCCAC-----CACGAGCAAGCCGGGCGCCATGTCACCTGGCCACCGAG
TCAGGGGATCAGGATAGGCCTATCCGGAAGCGGCCGCGTGGCGCACTCCCTATGGGCCTCGCTCATCTCCGACCCGCGCC
ACACAAACCTCATCGACGGCCAGCCGTTTCAAATCCTTAACAGCATCCACTGATCTAAGTGTGTGCACGTACCCCGCAGC
TCCAGAACCAGGACACGCCCACTGTATACGCAC------AGCTCGACCGCAATGGCGTCGCTCGTCGCCGTCCAGCCGGT
CGCCGTGAGGGGCCTGGCCGGCAGCTCCATCTCCGGCCGCAAGCTCGCCGTCCGGCCCGCCTCCGCCGCCGTCTCCCGCT
CCACGCGCAGGTACTT---A----ACACGACTTACTAA-----CACACGTACCAT-------CTAGAGCAACAGATCGTG
ACCAGCTCCGGCA--CGTGAACGCAGGGCTCGCGGGGCGGCGGTGGTGGCCAAGTACGGGGAGAAGAGCGTCTACTTCGA
CCTGGACGACATCGCCAACACGACGGGGCAGTGGGACCTGTACGGCAGCGACGCGGCGTCGCCCTACAACGGCCTGCAGA
GCAAGTTCTTCAACACCTTCGCCGCGCCCTTCACCAAGCGGGGGCTGCTGCTCAAGGTGCTGCTGCTCGGCGGCGGCTCG
CTGCTCGCCTACGTCAGCGCCACCGCCTCCCCCGACCTGCTCCCCATCAAGAAGGGGCCCCAGCTGCCGCCCACCCCGGG
ACCACGCGGCAAGATCTAAATCCCAT-----------CCTTCTTCTTCCCTCGT-CTCGCCTCGTGCTTGTGTACCATGG
ATCTCATCTGATCTGATGGATCTC-------CCCTATCTATGTG----TTCTGTTGATACTTGATCGTTGTACT---TCG
TATCAGTAATTGGAAAGATGCTGCGTGCATGGTGCATGCAAT------TACTAGATCATTTGCTCTTCGATGATTGCTAC
GTACTGGTTTTT---GTACCATGTTTTTGCTGTACTGGCTGTTTAAATTACTTGTCTAGA--------------------
----------------------------------------GGGTACAGTGCCGATCCATAGTTCTTCCCCTTTGGTTTAT
GTCAC---------------------------------TCTAGCCAATACGTATTGTCCGGCCGGCC----TACTCATGG
CCCTACGTGCACAGCTGCACACGTACAT----------------------------------------------------
-------------------------------------------------------------ACTCCCCCGTCCGCC---C
GGAACTGCTATCCATTTCTGCGACAAATAATTCAGAACAGAGGAATTATTTACTAACGGTTGTTGCTGCTGCCAGCGGGA
AATTAGATCTTACCCCACTTGTTTCGTTAATGTCTACTCCCTCCGTTTCAAAATAGATGACCCAACTTTGTACTAACTTT
GTACTAAAGTTAGTATAAAGTTGAGTCATCTATTTTGGAACGGATGGAGTAATACATACCATCAATCATACATTGCTTCG
TCGA-TTTATGCAAAAATCCAACTGACATTATAACACT-------------GGGAAGGCTACGCTTAACAAACATTGCAT
GGAAACACAGGGTCTGGAAGAGGTCAAGGTTAACTAGTATACAAGTGGGCTAGAGAACTACTACATGTCCATTTTTCAGG
CTC-AGTGTGAAAAATCTCATGATTATTTACATCATGTAGAACAGGGGGTCCACACTTCAGCAGCACATCATCTTGGCCT
CCATACCAAATTTCCATTGGGGGTCGAACACAATGGAGATACAGACAGGTGTCCCAAAGCTTACATAAACCTCACAAGTC
ACAGTGCACCTTGATCACAATGCTCTGAACACATATTTACATGCATTTTGGTCCGAATGATCTGGCACATATGTCTTCCC
CC
>chr1A_372
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---------------------------------------------------ATATGTTGTGTTCATAGATATTTCGGTTC
TATGTACTGCACGTACTCACATGCTTATGTATCGGTATATGAGTTGCATA---------TCATGCTTATTATCTACTCGT
GGATTAGATTAATAAAAAGTGTGCTAATGTATCCATCACGATCTCGATCTTGCCCGGCCGTATGGGCATCACGTTGTGTT
GGTGTACACACCCTCGCCATTTAACGAACGAAATCAATGTGTTGGTGTATATCGATCTCTCTTTAATTTCCTTGAGCAAA
GATGATCCGTGCCGGTGCCCGTGCACGCGCTGTCCTAGCAATCCTCGTAGGCCCACAGCATCTCTACGAGCGATCCCGTC
GACCGCACGCACGAACGGACGGCGAGATCTCCTCCACTCCGCCAGGAGCAAGCGGGGCGCCATGTCACCCCGCCACCGTG
TCAGGGGGTCAGGATAGGCCTATCCGGAAGCGGCCGCGTGGCGCCCTCCCTATGGGCGTCGGCCGCGCGCAGCCTCTCCC
ACACAAACCTCATCGACGGCCAGCCGTTTCAAATCCTTAACAGCATCCACTGATCAAAGTGTGTGCACGTACCCCGCAGC
TCCAGAACCAGGACACGCCCACGGTATACGCACGT--ACAGCTCGATCGCAATGGCGTCGCTCGTCGCCGTCCAGCCGGT
CGCCGTGCGGGGCCTGGCCGGCAGCTCCATCTCCGGCCGCAAGCTCGCCGTCCGGCCCGCCTCCGCCGCCGTCTCCCGCT
CCACCCGCAGGTACTACCCA----ACACGAGTTCGACAGCACGCACACCATCGAT-------CGAGAGCAACACCGCGTG
GCTCAACTGACATGGCATGAACGCAGGGCTCGCGGGGCGGCGGTGGTGGCCAAGTACGGGGAGAAGAGCGTCTACTTCGA
CCTGGACGACATCGCCAACACGACGGGGCAGTGGGACCTGTACGGCAGCGACGCGGCGTCGCCCTACAACGGCCTGCAGA
GCAAGTTCTTCAACACCTTCGCCGCGCCCTTCACCAAGCGAGGGCTGCTGCTCAAGGTCCTGCTGCTCGGCGGCGGCTCC
CTGCTCGCCTACGTCAGCGCCACCGCCTCCCCCGACCTGCTCCCCATCAAGAAGGGGCCCCAGCTGCCCCCCACCCCGGG
GCCACGTGGCAAGATCTAAGTAGATCTGCAATCAAGGCCTTCTT----CCTCCT-CTCGCCTCGTGCTTGTGTACCATGG
ATCTGATGGATTCCC--------CCCTATGGCCCTATCTATGTC----CTCTGTTGATACTTGATCTTTGTACTACTTCG
TATCAGTAATTGGAAAGATGCTGCTTGCATGATGCATGCAATTACTACTAGTAGATCATTTGCTCTTTGACGATTGCCA-
GTACTGTTTTTTGCAGTACCATGTTTTTGCTGTACTGGCGGTTTAAATTACTACTTCCTCAATACCTGCGACAAGTAATC
CAGAACGGAGGGAGTACTTGCCTAATGTGTGCGATGGTACGGGTACAGTGCCGATCTATACTTCTTCCCCTGGGTTTGGT
TTGTGCTTTATATATAAAAAGCAGGGCGAAAGCCTGTTTCGAGCCAATATGTATTGTCCGGCCGGCC----TACTCATCA
CTCTGCGTGCACAGCTGCACACGTACATGGACGCAGCTCCTCTGACGTACGGCGCACTCGCTGACGTGTGGACCCGGACC
CACGCGTCAGTGGCCCAACGTCAGGTGGCCGTACGTCAGGGGATCCGGCTCCCACGTACTTACTCCC---TCCGTC---C
GGAACTACTATCCATTTCTGCGACAAATAATTCGAA---------------ACTAATAGTTGTTGCTGCTGCCGGCAGGA
TATTAGTTCTTACCCCGCTTGTTTCGTTAATGTCTG--------------------------------------------
---------------------------------------------------ATAAATAT-ATCAAGCATACATTGCGTCG
TCGATTTTATGCAAAAATCCAACTGACATTATAACACTCCTACAAGACACTGGAAAGGCTACGCTTAACAAACATTGCAC
GGAAA-ACAGGGTCTGGAAGAGGTCAAGGTTAACTAGTACAGAAGCAGGCTAGAAA---ACTACATGTCCATTTCTCAGG
CTC-AGTGTGAAAAATCTCAACATTATTT---------------------------------------------------
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--
>chr1B_610
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-------------------------------------------------TATGGATCTCTCTTTAATTTTCGTCAGCAAA
GATGATCCGTGCCCGTGCCCAGGAACGTGCTGTCCTAGCAAGCCTCGTGGGCCCACAGTATCTGTACGAGCGATCTTATC
AGCGGCGCTCCCGAACGGACGGCGAGATCTCCTCC-----------------CCGGGCGCCATGTCACCTCGCCACCGGG
TCAGGGAATCAGGATAGCCCTATCCGGAAGCGGCCGCGTGGCGCCCTCCCTATGGGCCTCCGCCGCGCGCAGCCTCTCCC
ACACAAACCTCATCGACGGCCAGCCGTTTCAAATCCTTAACAGCATCCAC-GATCTAAGCGTGTGCACGTACGCCGCAGC
TCCAGAACCAGGACACGCCCACTGTATACGCAGTCGCACAGCTCGATCGCAATGGCGTCGCTCGTCGCCGTCCAGCCGGT
CGCCGTGAGGGGCCTGGCCGGCAGCTCCATCTCCGGCCGCAAGCTCGCCGTCCGGCCCTCCTCCGCCGCCGTCTCCCGCT
CCACCCGCAGGTACTTTACTTTACACACGACTTAATAAACATATGACACACCATGCACGCACCGAGAGCAACAGAGCGTG
ACCAGCTCCGGCA--CATGGACGCAGGGCTCGCGGGGCGGCGGTGGTGGCCAAGTACGGGGAGAAGAGCGTCTACTTCGA
CCTGGACGACATCGCCAACACGACGGGGCAGTGGGACCTGTACGGCAGCGACGCCGCGTCGCCCTACAACGGCCTGCAGA
GCAAGTTCTTCAACACCTTCGCCGCGCCCTTCACCAAGCGGGGGCTGCTGCTCAAGGTGCTGCTGCTCGGCGGCGGCTCG
CTGCTCGCCTACGTCAGCGCCACCGCCTCCCCCGACCTGCTCCCCATCAAGAAGGGGCCCCAGCTGCCGCCCACCCCGGG
ACCACGCGGCAAGATCTAAAGC--TCTGCAATCAAGGCCTTCTTCCTCCTCCCGCCTCGCCTCGTGCTTGTGTACCATGG
ATCTCGTCGATTCCC--------C-------CCTTATCTATGTGCTTGCTCTGTTGATACTTGATCTTTGTACT---TTG
TATCAGTAATTGGAAAGATGCTGCGTGCATGGTGCATGCAAT------TATTAGATCA----------------------
----TGGTTTTT---GTACCATGTTTTTGCTATACTGGCGGTTTAAATTACT----------------------------
-------------------------------------------------------------------------------T
GTCAC---------------------------------TCTAGCCAATACGTATTGTCCGGCCGGCCGGCCTACTCACGG
CTCTACGTGCACAGCTGCACACGTACAT----------------------------------------------------
-------------------------------------------------------------ACTCCC---TCCGTGCGTC
GAAACTACTGTCCATTTTTGCGACAAATAATTCAGGACCGAGGGAGTACTTACTAACAGTTGCTGCTGCTGCCGGCGGGA
AATTAGATCTTAACACACTTGTTTCGTTAATGTCTG--------------------------------------------
---------------------------------------------------ATAAATACCATCAATCATGCATTGCGTCG
GCGA-TTTATGCAAAAATCCAACTGACATTATAACACTCCTAGAAGACACTGGAAAGGATACGCTTAACAAGCATTGCAT
GGAAA-ACAGGGTCTGGAAGAGGTCGAGGTTAACTAGTATAGAAGTGGGCTAGAAA---ACTACATGTCCATTTGTCAGG
CTCAAGTGTGAAAAATCTCATGATTATTTAGCTCATGTAGAACAGGGGGTCCACTCTTCAGCAGCACATCATCTTGGCCT
CCGCACCAAATTTCCATTGGGGGTCGAACGCAATGGAGATACAGACAGGCGTCCGAAAGCTTACATAAACCTCACAAGTC
ACAGTGCACCTTGATCACAATGCTCTGAACACATATTTACATCCATTTCACTCCGAATGATCTGGCACATATGTCTTCCC
CC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-------S--S------
---------------------------S--------S-------------SSSSSSSSS---------------------
------------------S---------S------S------------------------------S---S---------
--------S-----------------------------------S-----------------------------------
-----------------------------------------------------------------------S--------
----------S---------------------------------S-------------------------S-------S-
--------------------------------------------S----------------SS-SSSSS-SS--SSSS--
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----------------------------------------------S---------------------------------
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----S-----------------------------S-------------SSS-S----------S-----------S----
----------------S---------------------------------------------------------------
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----------------------SSSS-------------------S------S---------------------------
--------SSS--SSSSSSSSSS-------------------------S-----------------S-------------
--------------------------------------------------S----------------S--S------S-S
---------------------------------------S------------SS-SSSSS--------------------
--------------------------------------------------------S---S----------SS-S--SS-
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-S------------------------------------------------------------------------------
-------------------------------------------------------------------SSS----S-----
------S-------------------------------S----S-S--S--------S---------------S------
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---------------------S---
-----------------------------------------------------S--------------------------
-----S-----------------------------------S------------S-SSS---------------S-----
------------------------------SS----------------------S-------------------------
--SS-------------------------S-------------------S----S-------------------------
------------------------------------------S-----SSS-----------------------------
--
>forward_207
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---------------------------ACTTAAATCCGGACTGCGGG---------------------------------
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--
>reverse_2486
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-----CACAGGGTCTGGAAGAGGTC-------------------------------------------------------
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--
