Multiple sequence alignment - TraesCS1D01G394400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G394400 chr1D 100.000 3111 0 0 1 3111 463458415 463455305 0.000000e+00 5746
1 TraesCS1D01G394400 chr1D 89.354 263 24 3 234 494 379732316 379732576 8.320000e-86 327
2 TraesCS1D01G394400 chr1A 91.273 974 51 17 493 1446 555732410 555733369 0.000000e+00 1297
3 TraesCS1D01G394400 chr1A 86.818 1191 77 37 1529 2684 555733373 555734518 0.000000e+00 1256
4 TraesCS1D01G394400 chr1A 86.531 980 69 31 1980 2930 555733793 555734738 0.000000e+00 1020
5 TraesCS1D01G394400 chr1B 92.820 766 49 4 685 1446 638983769 638984532 0.000000e+00 1105
6 TraesCS1D01G394400 chr1B 89.391 443 21 13 1529 1955 638984528 638984960 4.570000e-148 534
7 TraesCS1D01G394400 chr1B 96.667 210 6 1 1 210 255889845 255890053 6.390000e-92 348
8 TraesCS1D01G394400 chr1B 82.946 387 43 9 1980 2349 638984957 638985337 8.320000e-86 327
9 TraesCS1D01G394400 chr1B 89.904 208 20 1 493 699 638983538 638983745 1.840000e-67 267
10 TraesCS1D01G394400 chr1B 78.606 416 26 23 1532 1913 638950907 638951293 1.880000e-52 217
11 TraesCS1D01G394400 chr7D 98.524 271 4 0 228 498 633813637 633813907 2.170000e-131 479
12 TraesCS1D01G394400 chr7D 95.918 98 2 2 1445 1541 350149333 350149429 1.150000e-34 158
13 TraesCS1D01G394400 chr6D 98.077 208 4 0 1 208 460163331 460163124 2.280000e-96 363
14 TraesCS1D01G394400 chr6D 95.876 97 4 0 1443 1539 316625955 316625859 1.150000e-34 158
15 TraesCS1D01G394400 chr7B 91.255 263 17 4 234 494 506986687 506986945 1.370000e-93 353
16 TraesCS1D01G394400 chr7B 88.636 264 27 3 233 494 680069536 680069274 5.010000e-83 318
17 TraesCS1D01G394400 chr7A 96.618 207 7 0 2 208 239774798 239775004 8.260000e-91 344
18 TraesCS1D01G394400 chr7A 88.889 270 24 5 234 500 540721541 540721275 8.320000e-86 327
19 TraesCS1D01G394400 chr7A 94.118 102 4 2 1434 1534 579199448 579199548 1.490000e-33 154
20 TraesCS1D01G394400 chr2A 96.209 211 4 2 1 208 21811474 21811683 2.970000e-90 342
21 TraesCS1D01G394400 chr2A 95.918 98 2 2 1445 1542 421567873 421567778 1.150000e-34 158
22 TraesCS1D01G394400 chr2A 92.453 106 8 0 1437 1542 695657061 695657166 5.370000e-33 152
23 TraesCS1D01G394400 chr5B 89.259 270 22 5 228 494 252323909 252323644 6.430000e-87 331
24 TraesCS1D01G394400 chr5B 88.390 267 27 4 233 498 250927134 250927397 5.010000e-83 318
25 TraesCS1D01G394400 chr3B 89.474 266 22 5 234 496 692738134 692738396 6.430000e-87 331
26 TraesCS1D01G394400 chr4D 89.394 264 23 4 234 494 390266873 390266612 8.320000e-86 327
27 TraesCS1D01G394400 chr4D 78.972 214 30 11 6 208 509017000 509016791 7.000000e-27 132
28 TraesCS1D01G394400 chr5A 95.000 200 10 0 1 200 1191733 1191534 6.480000e-82 315
29 TraesCS1D01G394400 chr5A 95.385 130 6 0 79 208 564539113 564539242 1.130000e-49 207
30 TraesCS1D01G394400 chr5A 97.000 100 3 0 1438 1537 641680762 641680861 5.340000e-38 169
31 TraesCS1D01G394400 chr2B 92.788 208 10 3 1 208 766052837 766052635 2.350000e-76 296
32 TraesCS1D01G394400 chr5D 96.842 95 2 1 1439 1533 302394758 302394851 1.150000e-34 158
33 TraesCS1D01G394400 chr6A 95.876 97 3 1 1439 1535 26976061 26975966 4.150000e-34 156
34 TraesCS1D01G394400 chr4A 94.118 102 4 2 1433 1534 738877604 738877505 1.490000e-33 154
35 TraesCS1D01G394400 chr4B 79.904 209 30 9 16 215 6394607 6394402 3.230000e-30 143
36 TraesCS1D01G394400 chr3D 83.077 130 16 6 1441 1566 12275320 12275193 2.540000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G394400 chr1D 463455305 463458415 3110 True 5746.00 5746 100.000000 1 3111 1 chr1D.!!$R1 3110
1 TraesCS1D01G394400 chr1A 555732410 555734738 2328 False 1191.00 1297 88.207333 493 2930 3 chr1A.!!$F1 2437
2 TraesCS1D01G394400 chr1B 638983538 638985337 1799 False 558.25 1105 88.765250 493 2349 4 chr1B.!!$F3 1856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.317479 GCGCGGGGTATCATCTAGTT 59.683 55.0 8.83 0.0 0.0 2.24 F
1423 1484 0.102481 TCTGCGGATCGGAAGTAAGC 59.898 55.0 8.07 0.0 0.0 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 1942 0.232303 GTTGCTTCAAGTCACCGACG 59.768 55.0 0.0 0.0 37.67 5.12 R
3018 3137 0.033601 TCCATTGCATACCCACCCAC 60.034 55.0 0.0 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.835389 ATTTCTTTTGTCATGAATTTTCCTTCA 57.165 25.926 0.00 0.00 39.35 3.02
27 28 9.835389 TTTCTTTTGTCATGAATTTTCCTTCAT 57.165 25.926 0.00 0.00 44.66 2.57
28 29 9.835389 TTCTTTTGTCATGAATTTTCCTTCATT 57.165 25.926 0.00 0.00 41.89 2.57
29 30 9.263538 TCTTTTGTCATGAATTTTCCTTCATTG 57.736 29.630 0.00 0.00 41.89 2.82
30 31 7.966246 TTTGTCATGAATTTTCCTTCATTGG 57.034 32.000 0.00 0.00 41.89 3.16
31 32 6.669125 TGTCATGAATTTTCCTTCATTGGT 57.331 33.333 0.00 0.00 41.89 3.67
32 33 7.065120 TGTCATGAATTTTCCTTCATTGGTT 57.935 32.000 0.00 0.00 41.89 3.67
33 34 7.507829 TGTCATGAATTTTCCTTCATTGGTTT 58.492 30.769 0.00 0.00 41.89 3.27
34 35 8.646004 TGTCATGAATTTTCCTTCATTGGTTTA 58.354 29.630 0.00 0.00 41.89 2.01
35 36 9.657419 GTCATGAATTTTCCTTCATTGGTTTAT 57.343 29.630 0.00 0.00 41.89 1.40
39 40 9.500785 TGAATTTTCCTTCATTGGTTTATTTCC 57.499 29.630 0.00 0.00 30.34 3.13
40 41 9.500785 GAATTTTCCTTCATTGGTTTATTTCCA 57.499 29.630 0.00 0.00 0.00 3.53
43 44 9.859152 TTTTCCTTCATTGGTTTATTTCCATTT 57.141 25.926 0.00 0.00 34.75 2.32
44 45 8.845413 TTCCTTCATTGGTTTATTTCCATTTG 57.155 30.769 0.00 0.00 34.75 2.32
45 46 7.972301 TCCTTCATTGGTTTATTTCCATTTGT 58.028 30.769 0.00 0.00 34.75 2.83
46 47 9.094578 TCCTTCATTGGTTTATTTCCATTTGTA 57.905 29.630 0.00 0.00 34.75 2.41
47 48 9.150348 CCTTCATTGGTTTATTTCCATTTGTAC 57.850 33.333 0.00 0.00 34.75 2.90
48 49 9.927668 CTTCATTGGTTTATTTCCATTTGTACT 57.072 29.630 0.00 0.00 34.75 2.73
49 50 9.703892 TTCATTGGTTTATTTCCATTTGTACTG 57.296 29.630 0.00 0.00 34.75 2.74
50 51 9.083422 TCATTGGTTTATTTCCATTTGTACTGA 57.917 29.630 0.00 0.00 34.75 3.41
51 52 9.703892 CATTGGTTTATTTCCATTTGTACTGAA 57.296 29.630 0.00 0.00 34.75 3.02
63 64 9.965824 TCCATTTGTACTGAATTTTCTTTCTTC 57.034 29.630 0.00 0.00 0.00 2.87
64 65 9.196552 CCATTTGTACTGAATTTTCTTTCTTCC 57.803 33.333 0.00 0.00 0.00 3.46
65 66 9.971922 CATTTGTACTGAATTTTCTTTCTTCCT 57.028 29.630 0.00 0.00 0.00 3.36
67 68 9.801873 TTTGTACTGAATTTTCTTTCTTCCTTG 57.198 29.630 0.00 0.00 0.00 3.61
68 69 7.425606 TGTACTGAATTTTCTTTCTTCCTTGC 58.574 34.615 0.00 0.00 0.00 4.01
69 70 5.847304 ACTGAATTTTCTTTCTTCCTTGCC 58.153 37.500 0.00 0.00 0.00 4.52
70 71 5.363580 ACTGAATTTTCTTTCTTCCTTGCCA 59.636 36.000 0.00 0.00 0.00 4.92
71 72 6.127083 ACTGAATTTTCTTTCTTCCTTGCCAA 60.127 34.615 0.00 0.00 0.00 4.52
72 73 6.648192 TGAATTTTCTTTCTTCCTTGCCAAA 58.352 32.000 0.00 0.00 0.00 3.28
73 74 7.108847 TGAATTTTCTTTCTTCCTTGCCAAAA 58.891 30.769 0.00 0.00 0.00 2.44
74 75 7.774625 TGAATTTTCTTTCTTCCTTGCCAAAAT 59.225 29.630 0.00 0.00 0.00 1.82
75 76 9.271828 GAATTTTCTTTCTTCCTTGCCAAAATA 57.728 29.630 0.00 0.00 0.00 1.40
76 77 9.625747 AATTTTCTTTCTTCCTTGCCAAAATAA 57.374 25.926 0.00 0.00 0.00 1.40
77 78 9.625747 ATTTTCTTTCTTCCTTGCCAAAATAAA 57.374 25.926 0.00 0.00 0.00 1.40
78 79 9.454859 TTTTCTTTCTTCCTTGCCAAAATAAAA 57.545 25.926 0.00 0.00 0.00 1.52
79 80 8.432110 TTCTTTCTTCCTTGCCAAAATAAAAC 57.568 30.769 0.00 0.00 0.00 2.43
80 81 7.791029 TCTTTCTTCCTTGCCAAAATAAAACT 58.209 30.769 0.00 0.00 0.00 2.66
81 82 8.264347 TCTTTCTTCCTTGCCAAAATAAAACTT 58.736 29.630 0.00 0.00 0.00 2.66
82 83 8.432110 TTTCTTCCTTGCCAAAATAAAACTTC 57.568 30.769 0.00 0.00 0.00 3.01
83 84 7.360113 TCTTCCTTGCCAAAATAAAACTTCT 57.640 32.000 0.00 0.00 0.00 2.85
84 85 7.791029 TCTTCCTTGCCAAAATAAAACTTCTT 58.209 30.769 0.00 0.00 0.00 2.52
85 86 8.264347 TCTTCCTTGCCAAAATAAAACTTCTTT 58.736 29.630 0.00 0.00 0.00 2.52
86 87 9.541143 CTTCCTTGCCAAAATAAAACTTCTTTA 57.459 29.630 0.00 0.00 0.00 1.85
87 88 8.880878 TCCTTGCCAAAATAAAACTTCTTTAC 57.119 30.769 0.00 0.00 0.00 2.01
88 89 8.700973 TCCTTGCCAAAATAAAACTTCTTTACT 58.299 29.630 0.00 0.00 0.00 2.24
89 90 9.974980 CCTTGCCAAAATAAAACTTCTTTACTA 57.025 29.630 0.00 0.00 0.00 1.82
164 165 9.781834 TTATTGAATTTAACTTCTACCATTGCG 57.218 29.630 7.05 0.00 0.00 4.85
165 166 6.811253 TGAATTTAACTTCTACCATTGCGT 57.189 33.333 7.05 0.00 0.00 5.24
166 167 6.607689 TGAATTTAACTTCTACCATTGCGTG 58.392 36.000 7.05 0.00 0.00 5.34
167 168 4.413495 TTTAACTTCTACCATTGCGTGC 57.587 40.909 0.00 0.00 0.00 5.34
168 169 2.185004 AACTTCTACCATTGCGTGCT 57.815 45.000 0.00 0.00 0.00 4.40
169 170 3.328382 AACTTCTACCATTGCGTGCTA 57.672 42.857 0.00 0.00 0.00 3.49
170 171 3.328382 ACTTCTACCATTGCGTGCTAA 57.672 42.857 0.00 0.00 0.00 3.09
171 172 3.670625 ACTTCTACCATTGCGTGCTAAA 58.329 40.909 0.00 0.00 0.00 1.85
172 173 4.069304 ACTTCTACCATTGCGTGCTAAAA 58.931 39.130 0.00 0.00 0.00 1.52
173 174 4.517453 ACTTCTACCATTGCGTGCTAAAAA 59.483 37.500 0.00 0.00 0.00 1.94
188 189 4.963815 AAAAATCCCGCAGCAACG 57.036 50.000 0.00 0.00 0.00 4.10
189 190 1.372872 AAAAATCCCGCAGCAACGC 60.373 52.632 0.00 0.00 0.00 4.84
201 202 2.587753 CAACGCGCGGGGTATCAT 60.588 61.111 35.22 7.19 0.00 2.45
202 203 2.279918 AACGCGCGGGGTATCATC 60.280 61.111 35.22 0.00 0.00 2.92
203 204 2.792947 AACGCGCGGGGTATCATCT 61.793 57.895 35.22 5.42 0.00 2.90
204 205 1.457823 AACGCGCGGGGTATCATCTA 61.458 55.000 35.22 0.00 0.00 1.98
205 206 1.154016 CGCGCGGGGTATCATCTAG 60.154 63.158 24.84 0.00 0.00 2.43
206 207 1.863662 CGCGCGGGGTATCATCTAGT 61.864 60.000 24.84 0.00 0.00 2.57
207 208 0.317479 GCGCGGGGTATCATCTAGTT 59.683 55.000 8.83 0.00 0.00 2.24
208 209 1.542915 GCGCGGGGTATCATCTAGTTA 59.457 52.381 8.83 0.00 0.00 2.24
209 210 2.029649 GCGCGGGGTATCATCTAGTTAA 60.030 50.000 8.83 0.00 0.00 2.01
210 211 3.553508 GCGCGGGGTATCATCTAGTTAAA 60.554 47.826 8.83 0.00 0.00 1.52
211 212 4.624015 CGCGGGGTATCATCTAGTTAAAA 58.376 43.478 0.00 0.00 0.00 1.52
212 213 5.051816 CGCGGGGTATCATCTAGTTAAAAA 58.948 41.667 0.00 0.00 0.00 1.94
213 214 5.699458 CGCGGGGTATCATCTAGTTAAAAAT 59.301 40.000 0.00 0.00 0.00 1.82
214 215 6.869913 CGCGGGGTATCATCTAGTTAAAAATA 59.130 38.462 0.00 0.00 0.00 1.40
215 216 7.548075 CGCGGGGTATCATCTAGTTAAAAATAT 59.452 37.037 0.00 0.00 0.00 1.28
216 217 8.665685 GCGGGGTATCATCTAGTTAAAAATATG 58.334 37.037 0.00 0.00 0.00 1.78
217 218 9.720769 CGGGGTATCATCTAGTTAAAAATATGT 57.279 33.333 0.00 0.00 0.00 2.29
236 237 9.762933 AAATATGTTGTGCAAACAAAAGATACT 57.237 25.926 15.21 3.40 33.39 2.12
237 238 8.970691 ATATGTTGTGCAAACAAAAGATACTC 57.029 30.769 15.21 0.00 33.39 2.59
238 239 5.587289 TGTTGTGCAAACAAAAGATACTCC 58.413 37.500 10.67 0.00 0.00 3.85
239 240 4.846779 TGTGCAAACAAAAGATACTCCC 57.153 40.909 0.00 0.00 0.00 4.30
240 241 4.469657 TGTGCAAACAAAAGATACTCCCT 58.530 39.130 0.00 0.00 0.00 4.20
241 242 4.518970 TGTGCAAACAAAAGATACTCCCTC 59.481 41.667 0.00 0.00 0.00 4.30
242 243 4.079253 TGCAAACAAAAGATACTCCCTCC 58.921 43.478 0.00 0.00 0.00 4.30
243 244 3.444034 GCAAACAAAAGATACTCCCTCCC 59.556 47.826 0.00 0.00 0.00 4.30
244 245 4.811063 GCAAACAAAAGATACTCCCTCCCT 60.811 45.833 0.00 0.00 0.00 4.20
245 246 5.325239 CAAACAAAAGATACTCCCTCCCTT 58.675 41.667 0.00 0.00 0.00 3.95
246 247 4.846168 ACAAAAGATACTCCCTCCCTTC 57.154 45.455 0.00 0.00 0.00 3.46
247 248 3.523972 ACAAAAGATACTCCCTCCCTTCC 59.476 47.826 0.00 0.00 0.00 3.46
248 249 3.783082 CAAAAGATACTCCCTCCCTTCCT 59.217 47.826 0.00 0.00 0.00 3.36
249 250 3.805360 AAGATACTCCCTCCCTTCCTT 57.195 47.619 0.00 0.00 0.00 3.36
250 251 3.805360 AGATACTCCCTCCCTTCCTTT 57.195 47.619 0.00 0.00 0.00 3.11
251 252 4.920781 AGATACTCCCTCCCTTCCTTTA 57.079 45.455 0.00 0.00 0.00 1.85
252 253 5.441727 AGATACTCCCTCCCTTCCTTTAT 57.558 43.478 0.00 0.00 0.00 1.40
253 254 6.562845 AGATACTCCCTCCCTTCCTTTATA 57.437 41.667 0.00 0.00 0.00 0.98
254 255 7.134857 AGATACTCCCTCCCTTCCTTTATAT 57.865 40.000 0.00 0.00 0.00 0.86
255 256 8.258641 AGATACTCCCTCCCTTCCTTTATATA 57.741 38.462 0.00 0.00 0.00 0.86
256 257 8.698476 AGATACTCCCTCCCTTCCTTTATATAA 58.302 37.037 0.00 0.00 0.00 0.98
257 258 8.919018 ATACTCCCTCCCTTCCTTTATATAAG 57.081 38.462 0.00 0.00 0.00 1.73
258 259 6.092241 ACTCCCTCCCTTCCTTTATATAAGG 58.908 44.000 0.00 0.00 39.63 2.69
259 260 6.064618 TCCCTCCCTTCCTTTATATAAGGT 57.935 41.667 4.13 0.00 38.49 3.50
260 261 5.850028 TCCCTCCCTTCCTTTATATAAGGTG 59.150 44.000 4.13 0.00 38.49 4.00
261 262 5.611408 CCCTCCCTTCCTTTATATAAGGTGT 59.389 44.000 4.13 0.00 38.49 4.16
262 263 6.465894 CCCTCCCTTCCTTTATATAAGGTGTG 60.466 46.154 4.13 5.64 38.49 3.82
263 264 6.101296 CCTCCCTTCCTTTATATAAGGTGTGT 59.899 42.308 4.13 0.00 38.49 3.72
264 265 7.366551 CCTCCCTTCCTTTATATAAGGTGTGTT 60.367 40.741 4.13 0.00 38.49 3.32
265 266 7.935405 TCCCTTCCTTTATATAAGGTGTGTTT 58.065 34.615 4.13 0.00 38.49 2.83
266 267 7.832187 TCCCTTCCTTTATATAAGGTGTGTTTG 59.168 37.037 4.13 0.00 38.49 2.93
267 268 7.614192 CCCTTCCTTTATATAAGGTGTGTTTGT 59.386 37.037 4.13 0.00 38.49 2.83
268 269 9.020731 CCTTCCTTTATATAAGGTGTGTTTGTT 57.979 33.333 4.13 0.00 38.55 2.83
304 305 3.986277 ACGAAGTTATGTTTGACCGAGT 58.014 40.909 0.00 0.00 37.78 4.18
305 306 4.374399 ACGAAGTTATGTTTGACCGAGTT 58.626 39.130 0.00 0.00 37.78 3.01
306 307 4.812626 ACGAAGTTATGTTTGACCGAGTTT 59.187 37.500 0.00 0.00 37.78 2.66
307 308 5.295045 ACGAAGTTATGTTTGACCGAGTTTT 59.705 36.000 0.00 0.00 37.78 2.43
308 309 6.183360 ACGAAGTTATGTTTGACCGAGTTTTT 60.183 34.615 0.00 0.00 37.78 1.94
370 371 8.942338 ATCATTTGATTCATCATGAAAAGTGG 57.058 30.769 3.63 0.00 40.12 4.00
371 372 7.898918 TCATTTGATTCATCATGAAAAGTGGT 58.101 30.769 3.63 0.00 40.12 4.16
372 373 8.369424 TCATTTGATTCATCATGAAAAGTGGTT 58.631 29.630 3.63 0.00 40.12 3.67
373 374 8.995220 CATTTGATTCATCATGAAAAGTGGTTT 58.005 29.630 3.63 0.00 40.12 3.27
374 375 8.592105 TTTGATTCATCATGAAAAGTGGTTTC 57.408 30.769 3.63 0.00 40.12 2.78
444 445 5.350504 TGTTGGTCAAACATTCAAATGGT 57.649 34.783 7.58 0.00 43.96 3.55
445 446 5.738909 TGTTGGTCAAACATTCAAATGGTT 58.261 33.333 7.58 4.05 46.69 3.67
452 453 5.989551 AAACATTCAAATGGTTGACTTGC 57.010 34.783 5.24 0.00 44.21 4.01
453 454 4.669206 ACATTCAAATGGTTGACTTGCA 57.331 36.364 7.58 0.00 43.52 4.08
454 455 4.370917 ACATTCAAATGGTTGACTTGCAC 58.629 39.130 7.58 0.00 43.52 4.57
455 456 2.772568 TCAAATGGTTGACTTGCACG 57.227 45.000 0.00 0.00 38.88 5.34
456 457 1.336440 TCAAATGGTTGACTTGCACGG 59.664 47.619 0.00 0.00 38.88 4.94
457 458 1.336440 CAAATGGTTGACTTGCACGGA 59.664 47.619 0.00 0.00 36.83 4.69
458 459 1.686355 AATGGTTGACTTGCACGGAA 58.314 45.000 0.00 0.00 0.00 4.30
459 460 1.686355 ATGGTTGACTTGCACGGAAA 58.314 45.000 0.00 0.00 0.00 3.13
460 461 1.464734 TGGTTGACTTGCACGGAAAA 58.535 45.000 0.00 0.00 0.00 2.29
461 462 2.028130 TGGTTGACTTGCACGGAAAAT 58.972 42.857 0.00 0.00 0.00 1.82
462 463 3.215151 TGGTTGACTTGCACGGAAAATA 58.785 40.909 0.00 0.00 0.00 1.40
463 464 3.632604 TGGTTGACTTGCACGGAAAATAA 59.367 39.130 0.00 0.00 0.00 1.40
464 465 4.279671 TGGTTGACTTGCACGGAAAATAAT 59.720 37.500 0.00 0.00 0.00 1.28
465 466 5.473846 TGGTTGACTTGCACGGAAAATAATA 59.526 36.000 0.00 0.00 0.00 0.98
466 467 5.798434 GGTTGACTTGCACGGAAAATAATAC 59.202 40.000 0.00 0.00 0.00 1.89
467 468 6.375377 GTTGACTTGCACGGAAAATAATACA 58.625 36.000 0.00 0.00 0.00 2.29
468 469 5.933790 TGACTTGCACGGAAAATAATACAC 58.066 37.500 0.00 0.00 0.00 2.90
469 470 5.106475 TGACTTGCACGGAAAATAATACACC 60.106 40.000 0.00 0.00 0.00 4.16
470 471 5.007682 ACTTGCACGGAAAATAATACACCT 58.992 37.500 0.00 0.00 0.00 4.00
471 472 5.475564 ACTTGCACGGAAAATAATACACCTT 59.524 36.000 0.00 0.00 0.00 3.50
472 473 6.655848 ACTTGCACGGAAAATAATACACCTTA 59.344 34.615 0.00 0.00 0.00 2.69
473 474 7.338449 ACTTGCACGGAAAATAATACACCTTAT 59.662 33.333 0.00 0.00 0.00 1.73
474 475 8.734218 TTGCACGGAAAATAATACACCTTATA 57.266 30.769 0.00 0.00 0.00 0.98
475 476 8.911918 TGCACGGAAAATAATACACCTTATAT 57.088 30.769 0.00 0.00 0.00 0.86
476 477 9.344772 TGCACGGAAAATAATACACCTTATATT 57.655 29.630 0.00 0.00 0.00 1.28
477 478 9.821662 GCACGGAAAATAATACACCTTATATTC 57.178 33.333 0.00 0.00 0.00 1.75
488 489 6.192970 ACACCTTATATTCTGGAATGGAGG 57.807 41.667 6.13 11.10 34.50 4.30
489 490 5.073691 ACACCTTATATTCTGGAATGGAGGG 59.926 44.000 17.33 12.19 33.55 4.30
490 491 5.310594 CACCTTATATTCTGGAATGGAGGGA 59.689 44.000 17.33 0.00 33.55 4.20
491 492 5.549619 ACCTTATATTCTGGAATGGAGGGAG 59.450 44.000 17.33 5.78 33.55 4.30
494 495 7.093112 CCTTATATTCTGGAATGGAGGGAGTAG 60.093 44.444 6.13 0.00 32.50 2.57
619 621 6.593382 TGGATATTTTTGTAAATGGCAGCAAC 59.407 34.615 0.00 0.00 35.61 4.17
623 625 6.500684 TTTTTGTAAATGGCAGCAACAAAA 57.499 29.167 22.35 22.35 44.10 2.44
625 627 5.921004 TTGTAAATGGCAGCAACAAAATC 57.079 34.783 8.36 0.00 0.00 2.17
628 630 6.389091 TGTAAATGGCAGCAACAAAATCTAG 58.611 36.000 0.00 0.00 0.00 2.43
749 789 0.611618 ACGCTTTGGGCAATCATGGA 60.612 50.000 0.00 0.00 41.91 3.41
795 835 3.260475 TGCAAGGTATGTATGCGAGTT 57.740 42.857 0.00 0.00 42.91 3.01
852 892 4.832823 TCATCCACCAGCTCGATTAGATAA 59.167 41.667 0.00 0.00 0.00 1.75
876 916 0.464870 TGCAAGCCAACAAGCAACAT 59.535 45.000 0.00 0.00 33.48 2.71
919 959 1.302033 ATCGCTTGATCGATGCCCC 60.302 57.895 0.54 0.00 46.18 5.80
947 987 3.620488 TCCAGCAGTTCAGTTTTTCAGT 58.380 40.909 0.00 0.00 0.00 3.41
951 991 3.063997 AGCAGTTCAGTTTTTCAGTGTCG 59.936 43.478 0.00 0.00 0.00 4.35
966 1006 5.356426 TCAGTGTCGATCAGTTGAAAAGAA 58.644 37.500 0.00 0.00 0.00 2.52
1260 1321 7.122650 TCCAACCAATTTTCTATGATCTTGGTC 59.877 37.037 10.99 0.00 44.07 4.02
1278 1339 2.095617 GGTCCGGTTTTTGTAATGGTCG 60.096 50.000 0.00 0.00 0.00 4.79
1366 1427 0.963962 AATTGGCTCCACTGTTGCTG 59.036 50.000 0.00 0.00 0.00 4.41
1423 1484 0.102481 TCTGCGGATCGGAAGTAAGC 59.898 55.000 8.07 0.00 0.00 3.09
1426 1487 1.480219 GCGGATCGGAAGTAAGCACG 61.480 60.000 4.16 0.00 0.00 5.34
1446 1512 5.445845 CACGTCAACCAATTAACCAAGTAC 58.554 41.667 0.00 0.00 0.00 2.73
1447 1513 5.237779 CACGTCAACCAATTAACCAAGTACT 59.762 40.000 0.00 0.00 0.00 2.73
1448 1514 5.467735 ACGTCAACCAATTAACCAAGTACTC 59.532 40.000 0.00 0.00 0.00 2.59
1449 1515 5.106830 CGTCAACCAATTAACCAAGTACTCC 60.107 44.000 0.00 0.00 0.00 3.85
1450 1516 5.182570 GTCAACCAATTAACCAAGTACTCCC 59.817 44.000 0.00 0.00 0.00 4.30
1451 1517 5.073965 TCAACCAATTAACCAAGTACTCCCT 59.926 40.000 0.00 0.00 0.00 4.20
1452 1518 5.175388 ACCAATTAACCAAGTACTCCCTC 57.825 43.478 0.00 0.00 0.00 4.30
1453 1519 4.850386 ACCAATTAACCAAGTACTCCCTCT 59.150 41.667 0.00 0.00 0.00 3.69
1454 1520 5.186198 CCAATTAACCAAGTACTCCCTCTG 58.814 45.833 0.00 0.00 0.00 3.35
1455 1521 5.280521 CCAATTAACCAAGTACTCCCTCTGT 60.281 44.000 0.00 0.00 0.00 3.41
1456 1522 6.070424 CCAATTAACCAAGTACTCCCTCTGTA 60.070 42.308 0.00 0.00 0.00 2.74
1457 1523 7.391620 CAATTAACCAAGTACTCCCTCTGTAA 58.608 38.462 0.00 0.00 0.00 2.41
1458 1524 6.999705 TTAACCAAGTACTCCCTCTGTAAA 57.000 37.500 0.00 0.00 0.00 2.01
1459 1525 4.886496 ACCAAGTACTCCCTCTGTAAAC 57.114 45.455 0.00 0.00 0.00 2.01
1460 1526 4.490706 ACCAAGTACTCCCTCTGTAAACT 58.509 43.478 0.00 0.00 0.00 2.66
1461 1527 5.648247 ACCAAGTACTCCCTCTGTAAACTA 58.352 41.667 0.00 0.00 0.00 2.24
1462 1528 6.080009 ACCAAGTACTCCCTCTGTAAACTAA 58.920 40.000 0.00 0.00 0.00 2.24
1463 1529 6.729569 ACCAAGTACTCCCTCTGTAAACTAAT 59.270 38.462 0.00 0.00 0.00 1.73
1464 1530 7.897565 ACCAAGTACTCCCTCTGTAAACTAATA 59.102 37.037 0.00 0.00 0.00 0.98
1465 1531 8.925338 CCAAGTACTCCCTCTGTAAACTAATAT 58.075 37.037 0.00 0.00 0.00 1.28
1471 1537 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
1472 1538 8.882415 TCCCTCTGTAAACTAATATAAAAGCG 57.118 34.615 0.00 0.00 0.00 4.68
1473 1539 8.480501 TCCCTCTGTAAACTAATATAAAAGCGT 58.519 33.333 0.00 0.00 0.00 5.07
1474 1540 9.106070 CCCTCTGTAAACTAATATAAAAGCGTT 57.894 33.333 0.00 0.00 0.00 4.84
1491 1557 8.828688 AAAAGCGTTTAGATCACTACTTTAGT 57.171 30.769 0.00 0.00 40.28 2.24
1492 1558 9.918630 AAAAGCGTTTAGATCACTACTTTAGTA 57.081 29.630 0.00 0.00 37.23 1.82
1495 1561 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
1496 1562 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
1523 1589 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
1524 1590 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
1525 1591 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
1526 1592 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
1527 1593 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
1528 1594 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1529 1595 9.866655 TCTTATATTAGTTTACGGAGGGAGTAA 57.133 33.333 0.00 0.00 32.84 2.24
1530 1596 9.905171 CTTATATTAGTTTACGGAGGGAGTAAC 57.095 37.037 0.00 0.00 34.25 2.50
1531 1597 9.646522 TTATATTAGTTTACGGAGGGAGTAACT 57.353 33.333 0.00 0.00 34.25 2.24
1546 1612 7.243091 AGGGAGTAACTAGGAAGATAGAATCC 58.757 42.308 0.00 0.00 35.88 3.01
1574 1640 7.285172 TGGATATTAACATTTGTCATGGACTGG 59.715 37.037 0.00 0.00 33.15 4.00
1745 1815 2.347490 GAGCACGCCTCCAAGGAA 59.653 61.111 0.00 0.00 37.67 3.36
1796 1866 2.225382 TCATCCACAAGGTAGTCCGA 57.775 50.000 0.00 0.00 39.05 4.55
1799 1869 3.118775 TCATCCACAAGGTAGTCCGATTG 60.119 47.826 0.00 0.00 39.05 2.67
1845 1918 3.164028 GCAACTGCTTTTGGTCGAC 57.836 52.632 7.13 7.13 38.21 4.20
1851 1924 1.946768 CTGCTTTTGGTCGACTGGAAA 59.053 47.619 16.46 12.32 0.00 3.13
1869 1942 4.811024 TGGAAATGAAGTGATAGTGATCGC 59.189 41.667 0.00 0.00 42.04 4.58
1870 1943 4.084849 GGAAATGAAGTGATAGTGATCGCG 60.085 45.833 0.00 0.00 45.60 5.87
1871 1944 3.717400 ATGAAGTGATAGTGATCGCGT 57.283 42.857 5.77 0.00 45.60 6.01
1872 1945 3.066369 TGAAGTGATAGTGATCGCGTC 57.934 47.619 5.77 3.66 45.60 5.19
1873 1946 2.037649 GAAGTGATAGTGATCGCGTCG 58.962 52.381 5.77 0.00 45.60 5.12
1895 1968 2.227388 GTGACTTGAAGCAACATCCCAG 59.773 50.000 0.00 0.00 0.00 4.45
1905 1978 2.746269 CAACATCCCAGTGCTGTTTTG 58.254 47.619 0.00 0.00 30.99 2.44
1906 1979 2.071778 ACATCCCAGTGCTGTTTTGT 57.928 45.000 0.00 0.00 0.00 2.83
1913 1986 2.598192 CCAGTGCTGTTTTGTTGTTTCG 59.402 45.455 0.00 0.00 0.00 3.46
1915 1988 4.407818 CAGTGCTGTTTTGTTGTTTCGTA 58.592 39.130 0.00 0.00 0.00 3.43
1916 1989 4.495472 CAGTGCTGTTTTGTTGTTTCGTAG 59.505 41.667 0.00 0.00 0.00 3.51
1917 1990 3.789224 GTGCTGTTTTGTTGTTTCGTAGG 59.211 43.478 0.00 0.00 0.00 3.18
1921 1994 3.110358 GTTTTGTTGTTTCGTAGGGTGC 58.890 45.455 0.00 0.00 0.00 5.01
1923 1996 2.335316 TGTTGTTTCGTAGGGTGCTT 57.665 45.000 0.00 0.00 0.00 3.91
1946 2024 7.935210 GCTTAGTTACCACCCTTATAAAGCATA 59.065 37.037 0.00 0.00 36.50 3.14
1951 2029 9.181061 GTTACCACCCTTATAAAGCATAAGAAA 57.819 33.333 5.74 0.00 46.29 2.52
1955 2033 8.406297 CCACCCTTATAAAGCATAAGAAAACTC 58.594 37.037 5.74 0.00 46.29 3.01
1956 2034 9.178758 CACCCTTATAAAGCATAAGAAAACTCT 57.821 33.333 5.74 0.00 46.29 3.24
1971 2049 7.308782 AGAAAACTCTAAGATTACAATGGCG 57.691 36.000 0.00 0.00 0.00 5.69
1972 2050 6.316390 AGAAAACTCTAAGATTACAATGGCGG 59.684 38.462 0.00 0.00 0.00 6.13
1973 2051 3.467803 ACTCTAAGATTACAATGGCGGC 58.532 45.455 0.00 0.00 0.00 6.53
1974 2052 3.134804 ACTCTAAGATTACAATGGCGGCT 59.865 43.478 11.43 0.00 0.00 5.52
1975 2053 3.466836 TCTAAGATTACAATGGCGGCTG 58.533 45.455 11.43 3.18 0.00 4.85
1976 2054 2.128771 AAGATTACAATGGCGGCTGT 57.871 45.000 11.43 9.96 0.00 4.40
1977 2055 3.275617 AAGATTACAATGGCGGCTGTA 57.724 42.857 11.43 8.83 0.00 2.74
1978 2056 3.492102 AGATTACAATGGCGGCTGTAT 57.508 42.857 11.43 2.28 0.00 2.29
1979 2057 3.820557 AGATTACAATGGCGGCTGTATT 58.179 40.909 11.43 7.92 0.00 1.89
1980 2058 4.968259 AGATTACAATGGCGGCTGTATTA 58.032 39.130 11.43 0.00 0.00 0.98
1981 2059 4.755123 AGATTACAATGGCGGCTGTATTAC 59.245 41.667 11.43 6.27 0.00 1.89
1982 2060 2.710096 ACAATGGCGGCTGTATTACT 57.290 45.000 11.43 0.00 0.00 2.24
1992 2072 6.072286 TGGCGGCTGTATTACTATTACTACTC 60.072 42.308 11.43 0.00 0.00 2.59
1993 2073 6.150809 GGCGGCTGTATTACTATTACTACTCT 59.849 42.308 0.00 0.00 0.00 3.24
1994 2074 7.242783 GCGGCTGTATTACTATTACTACTCTC 58.757 42.308 0.00 0.00 0.00 3.20
2009 2089 2.264455 ACTCTCCTTCATCACCAAGCT 58.736 47.619 0.00 0.00 0.00 3.74
2021 2101 7.701539 TCATCACCAAGCTAAATGTTTATGT 57.298 32.000 0.00 0.00 0.00 2.29
2026 2106 7.668052 TCACCAAGCTAAATGTTTATGTAGGTT 59.332 33.333 0.00 0.00 42.66 3.50
2059 2139 3.054361 AGGAGGACGTCAAGGCAATTATT 60.054 43.478 18.91 0.00 0.00 1.40
2087 2167 2.957402 TATGGATCATGGGAAGCACC 57.043 50.000 0.00 0.00 38.08 5.01
2089 2169 0.703488 TGGATCATGGGAAGCACCAA 59.297 50.000 0.00 0.00 45.13 3.67
2169 2259 3.310860 ATGGGACCGCGGAGACAAC 62.311 63.158 35.90 17.84 0.00 3.32
2300 2406 6.971602 TGCTTGTACGGAGATCTTATCTTAG 58.028 40.000 0.00 0.00 40.38 2.18
2363 2469 1.675310 CTCGAGGCCATGGTTTGCA 60.675 57.895 14.67 0.00 0.00 4.08
2377 2483 4.869215 TGGTTTGCAGTGTCATTGTAATG 58.131 39.130 0.00 0.00 37.75 1.90
2388 2494 7.334171 CAGTGTCATTGTAATGTAGTGATGGAA 59.666 37.037 4.67 0.00 37.65 3.53
2414 2520 1.633432 CAACCCACTCCTATCCCACAA 59.367 52.381 0.00 0.00 0.00 3.33
2429 2535 2.102925 CCCACAAACTCTTGCAAATGGT 59.897 45.455 0.00 0.00 35.84 3.55
2432 2538 4.037923 CCACAAACTCTTGCAAATGGTAGT 59.962 41.667 0.00 0.00 35.84 2.73
2465 2579 9.823647 AATGACAACACATTTACCAAAATAACA 57.176 25.926 0.00 0.00 37.20 2.41
2509 2623 8.999431 ACTAATTACACATTGAACCTACAACTG 58.001 33.333 0.00 0.00 32.50 3.16
2512 2626 7.667043 TTACACATTGAACCTACAACTGATC 57.333 36.000 0.00 0.00 32.50 2.92
2598 2712 6.260050 AGCATGGACACTAATATAACCAAACG 59.740 38.462 0.00 0.00 0.00 3.60
2643 2760 1.019278 AACACGACCGATGCCACATC 61.019 55.000 0.00 0.00 0.00 3.06
2765 2882 5.976458 TGTTGCCAATCAAAAAGAACTCTT 58.024 33.333 0.00 0.00 36.26 2.85
2824 2941 9.667107 TCTCCATCTAACCTAATAAACAACAAG 57.333 33.333 0.00 0.00 0.00 3.16
2833 2950 6.831868 ACCTAATAAACAACAAGAACACCACT 59.168 34.615 0.00 0.00 0.00 4.00
2834 2951 7.994334 ACCTAATAAACAACAAGAACACCACTA 59.006 33.333 0.00 0.00 0.00 2.74
2835 2952 8.842280 CCTAATAAACAACAAGAACACCACTAA 58.158 33.333 0.00 0.00 0.00 2.24
2837 2954 8.920509 AATAAACAACAAGAACACCACTAAAC 57.079 30.769 0.00 0.00 0.00 2.01
2850 2969 5.757808 ACACCACTAAACAATGCCAATTTTC 59.242 36.000 0.00 0.00 0.00 2.29
2888 3007 1.649271 GGGCTGGAGGTCCAATGGAT 61.649 60.000 4.81 0.00 46.97 3.41
2901 3020 3.659195 TCCAATGGATAGGCTGGATCAAT 59.341 43.478 0.00 0.00 32.97 2.57
2913 3032 3.806380 CTGGATCAATTGTAGCAGAGCT 58.194 45.455 5.13 0.00 43.41 4.09
2935 3054 1.679139 CACAGTTGGAGGAGTTTGCA 58.321 50.000 0.00 0.00 0.00 4.08
2936 3055 1.605710 CACAGTTGGAGGAGTTTGCAG 59.394 52.381 0.00 0.00 0.00 4.41
2937 3056 1.212935 ACAGTTGGAGGAGTTTGCAGT 59.787 47.619 0.00 0.00 0.00 4.40
2938 3057 1.605710 CAGTTGGAGGAGTTTGCAGTG 59.394 52.381 0.00 0.00 0.00 3.66
2939 3058 0.954452 GTTGGAGGAGTTTGCAGTGG 59.046 55.000 0.00 0.00 0.00 4.00
2940 3059 0.843309 TTGGAGGAGTTTGCAGTGGA 59.157 50.000 0.00 0.00 0.00 4.02
2941 3060 0.397941 TGGAGGAGTTTGCAGTGGAG 59.602 55.000 0.00 0.00 0.00 3.86
2942 3061 0.322008 GGAGGAGTTTGCAGTGGAGG 60.322 60.000 0.00 0.00 0.00 4.30
2943 3062 0.687354 GAGGAGTTTGCAGTGGAGGA 59.313 55.000 0.00 0.00 0.00 3.71
2944 3063 0.689623 AGGAGTTTGCAGTGGAGGAG 59.310 55.000 0.00 0.00 0.00 3.69
2945 3064 0.322008 GGAGTTTGCAGTGGAGGAGG 60.322 60.000 0.00 0.00 0.00 4.30
2946 3065 0.398318 GAGTTTGCAGTGGAGGAGGT 59.602 55.000 0.00 0.00 0.00 3.85
2947 3066 0.398318 AGTTTGCAGTGGAGGAGGTC 59.602 55.000 0.00 0.00 0.00 3.85
2948 3067 0.951040 GTTTGCAGTGGAGGAGGTCG 60.951 60.000 0.00 0.00 0.00 4.79
2949 3068 2.111999 TTTGCAGTGGAGGAGGTCGG 62.112 60.000 0.00 0.00 0.00 4.79
2950 3069 2.997897 GCAGTGGAGGAGGTCGGT 60.998 66.667 0.00 0.00 0.00 4.69
2951 3070 2.973899 CAGTGGAGGAGGTCGGTG 59.026 66.667 0.00 0.00 0.00 4.94
2952 3071 1.606601 CAGTGGAGGAGGTCGGTGA 60.607 63.158 0.00 0.00 0.00 4.02
2953 3072 1.304547 AGTGGAGGAGGTCGGTGAG 60.305 63.158 0.00 0.00 0.00 3.51
2954 3073 2.037367 TGGAGGAGGTCGGTGAGG 59.963 66.667 0.00 0.00 0.00 3.86
2955 3074 2.037527 GGAGGAGGTCGGTGAGGT 59.962 66.667 0.00 0.00 0.00 3.85
2956 3075 2.352032 GGAGGAGGTCGGTGAGGTG 61.352 68.421 0.00 0.00 0.00 4.00
2957 3076 2.283966 AGGAGGTCGGTGAGGTGG 60.284 66.667 0.00 0.00 0.00 4.61
2958 3077 2.283676 GGAGGTCGGTGAGGTGGA 60.284 66.667 0.00 0.00 0.00 4.02
2959 3078 1.686110 GGAGGTCGGTGAGGTGGAT 60.686 63.158 0.00 0.00 0.00 3.41
2960 3079 1.517832 GAGGTCGGTGAGGTGGATG 59.482 63.158 0.00 0.00 0.00 3.51
2961 3080 0.970937 GAGGTCGGTGAGGTGGATGA 60.971 60.000 0.00 0.00 0.00 2.92
2962 3081 0.972983 AGGTCGGTGAGGTGGATGAG 60.973 60.000 0.00 0.00 0.00 2.90
2963 3082 1.258445 GGTCGGTGAGGTGGATGAGT 61.258 60.000 0.00 0.00 0.00 3.41
2964 3083 0.108615 GTCGGTGAGGTGGATGAGTG 60.109 60.000 0.00 0.00 0.00 3.51
2965 3084 0.541998 TCGGTGAGGTGGATGAGTGT 60.542 55.000 0.00 0.00 0.00 3.55
2966 3085 0.390340 CGGTGAGGTGGATGAGTGTG 60.390 60.000 0.00 0.00 0.00 3.82
2967 3086 0.036010 GGTGAGGTGGATGAGTGTGG 60.036 60.000 0.00 0.00 0.00 4.17
2968 3087 0.674895 GTGAGGTGGATGAGTGTGGC 60.675 60.000 0.00 0.00 0.00 5.01
2969 3088 0.837691 TGAGGTGGATGAGTGTGGCT 60.838 55.000 0.00 0.00 0.00 4.75
2970 3089 0.392193 GAGGTGGATGAGTGTGGCTG 60.392 60.000 0.00 0.00 0.00 4.85
2971 3090 2.042831 GGTGGATGAGTGTGGCTGC 61.043 63.158 0.00 0.00 0.00 5.25
2972 3091 1.002868 GTGGATGAGTGTGGCTGCT 60.003 57.895 0.00 0.00 0.00 4.24
2973 3092 0.250234 GTGGATGAGTGTGGCTGCTA 59.750 55.000 0.00 0.00 0.00 3.49
2974 3093 0.538584 TGGATGAGTGTGGCTGCTAG 59.461 55.000 0.00 0.00 0.00 3.42
2975 3094 0.179062 GGATGAGTGTGGCTGCTAGG 60.179 60.000 0.00 0.00 0.00 3.02
2976 3095 0.179062 GATGAGTGTGGCTGCTAGGG 60.179 60.000 0.00 0.00 0.00 3.53
2977 3096 0.911525 ATGAGTGTGGCTGCTAGGGT 60.912 55.000 0.00 0.00 0.00 4.34
2978 3097 1.127567 TGAGTGTGGCTGCTAGGGTT 61.128 55.000 0.00 0.00 0.00 4.11
2979 3098 0.036875 GAGTGTGGCTGCTAGGGTTT 59.963 55.000 0.00 0.00 0.00 3.27
2980 3099 0.250901 AGTGTGGCTGCTAGGGTTTG 60.251 55.000 0.00 0.00 0.00 2.93
2981 3100 1.074775 TGTGGCTGCTAGGGTTTGG 59.925 57.895 0.00 0.00 0.00 3.28
2982 3101 1.378762 GTGGCTGCTAGGGTTTGGA 59.621 57.895 0.00 0.00 0.00 3.53
2983 3102 0.251165 GTGGCTGCTAGGGTTTGGAA 60.251 55.000 0.00 0.00 0.00 3.53
2984 3103 0.704076 TGGCTGCTAGGGTTTGGAAT 59.296 50.000 0.00 0.00 0.00 3.01
2985 3104 1.106285 GGCTGCTAGGGTTTGGAATG 58.894 55.000 0.00 0.00 0.00 2.67
2986 3105 1.106285 GCTGCTAGGGTTTGGAATGG 58.894 55.000 0.00 0.00 0.00 3.16
2987 3106 1.340991 GCTGCTAGGGTTTGGAATGGA 60.341 52.381 0.00 0.00 0.00 3.41
2988 3107 2.687914 GCTGCTAGGGTTTGGAATGGAT 60.688 50.000 0.00 0.00 0.00 3.41
2989 3108 3.435026 GCTGCTAGGGTTTGGAATGGATA 60.435 47.826 0.00 0.00 0.00 2.59
2990 3109 4.792068 CTGCTAGGGTTTGGAATGGATAA 58.208 43.478 0.00 0.00 0.00 1.75
2991 3110 4.792068 TGCTAGGGTTTGGAATGGATAAG 58.208 43.478 0.00 0.00 0.00 1.73
2992 3111 4.145052 GCTAGGGTTTGGAATGGATAAGG 58.855 47.826 0.00 0.00 0.00 2.69
2993 3112 3.688049 AGGGTTTGGAATGGATAAGGG 57.312 47.619 0.00 0.00 0.00 3.95
2994 3113 2.247372 AGGGTTTGGAATGGATAAGGGG 59.753 50.000 0.00 0.00 0.00 4.79
2995 3114 2.677914 GGTTTGGAATGGATAAGGGGG 58.322 52.381 0.00 0.00 0.00 5.40
2996 3115 2.246327 GGTTTGGAATGGATAAGGGGGA 59.754 50.000 0.00 0.00 0.00 4.81
2997 3116 3.566351 GTTTGGAATGGATAAGGGGGAG 58.434 50.000 0.00 0.00 0.00 4.30
2998 3117 1.833187 TGGAATGGATAAGGGGGAGG 58.167 55.000 0.00 0.00 0.00 4.30
2999 3118 1.076438 GGAATGGATAAGGGGGAGGG 58.924 60.000 0.00 0.00 0.00 4.30
3000 3119 1.417506 GGAATGGATAAGGGGGAGGGA 60.418 57.143 0.00 0.00 0.00 4.20
3001 3120 1.705745 GAATGGATAAGGGGGAGGGAC 59.294 57.143 0.00 0.00 0.00 4.46
3002 3121 0.473886 ATGGATAAGGGGGAGGGACG 60.474 60.000 0.00 0.00 0.00 4.79
3003 3122 1.842010 GGATAAGGGGGAGGGACGG 60.842 68.421 0.00 0.00 0.00 4.79
3004 3123 1.842010 GATAAGGGGGAGGGACGGG 60.842 68.421 0.00 0.00 0.00 5.28
3005 3124 3.421772 ATAAGGGGGAGGGACGGGG 62.422 68.421 0.00 0.00 0.00 5.73
3031 3150 4.137615 GGGGGTGGGTGGGTATGC 62.138 72.222 0.00 0.00 0.00 3.14
3032 3151 3.343326 GGGGTGGGTGGGTATGCA 61.343 66.667 0.00 0.00 0.00 3.96
3033 3152 2.767352 GGGTGGGTGGGTATGCAA 59.233 61.111 0.00 0.00 0.00 4.08
3034 3153 1.309688 GGGTGGGTGGGTATGCAAT 59.690 57.895 0.00 0.00 0.00 3.56
3035 3154 1.042559 GGGTGGGTGGGTATGCAATG 61.043 60.000 0.00 0.00 0.00 2.82
3036 3155 1.042559 GGTGGGTGGGTATGCAATGG 61.043 60.000 0.00 0.00 0.00 3.16
3037 3156 0.033601 GTGGGTGGGTATGCAATGGA 60.034 55.000 0.00 0.00 0.00 3.41
3038 3157 0.258484 TGGGTGGGTATGCAATGGAG 59.742 55.000 0.00 0.00 0.00 3.86
3039 3158 0.468029 GGGTGGGTATGCAATGGAGG 60.468 60.000 0.00 0.00 0.00 4.30
3040 3159 0.550914 GGTGGGTATGCAATGGAGGA 59.449 55.000 0.00 0.00 0.00 3.71
3041 3160 1.145738 GGTGGGTATGCAATGGAGGAT 59.854 52.381 0.00 0.00 0.00 3.24
3042 3161 2.375174 GGTGGGTATGCAATGGAGGATA 59.625 50.000 0.00 0.00 0.00 2.59
3043 3162 3.181434 GGTGGGTATGCAATGGAGGATAA 60.181 47.826 0.00 0.00 0.00 1.75
3044 3163 3.821033 GTGGGTATGCAATGGAGGATAAC 59.179 47.826 0.00 0.00 0.00 1.89
3045 3164 3.721575 TGGGTATGCAATGGAGGATAACT 59.278 43.478 0.00 0.00 31.08 2.24
3046 3165 4.202461 TGGGTATGCAATGGAGGATAACTC 60.202 45.833 0.00 0.00 45.84 3.01
3055 3174 1.941325 GAGGATAACTCAAGGGCACG 58.059 55.000 0.00 0.00 45.85 5.34
3056 3175 1.480954 GAGGATAACTCAAGGGCACGA 59.519 52.381 0.00 0.00 45.85 4.35
3057 3176 2.103263 GAGGATAACTCAAGGGCACGAT 59.897 50.000 0.00 0.00 45.85 3.73
3058 3177 2.505819 AGGATAACTCAAGGGCACGATT 59.494 45.455 0.00 0.00 0.00 3.34
3059 3178 3.054361 AGGATAACTCAAGGGCACGATTT 60.054 43.478 0.00 0.00 0.00 2.17
3060 3179 3.312697 GGATAACTCAAGGGCACGATTTC 59.687 47.826 0.00 0.00 0.00 2.17
3061 3180 2.270352 AACTCAAGGGCACGATTTCA 57.730 45.000 0.00 0.00 0.00 2.69
3062 3181 2.496899 ACTCAAGGGCACGATTTCAT 57.503 45.000 0.00 0.00 0.00 2.57
3063 3182 2.795329 ACTCAAGGGCACGATTTCATT 58.205 42.857 0.00 0.00 0.00 2.57
3064 3183 2.749621 ACTCAAGGGCACGATTTCATTC 59.250 45.455 0.00 0.00 0.00 2.67
3065 3184 2.749076 CTCAAGGGCACGATTTCATTCA 59.251 45.455 0.00 0.00 0.00 2.57
3066 3185 3.153130 TCAAGGGCACGATTTCATTCAA 58.847 40.909 0.00 0.00 0.00 2.69
3067 3186 3.763360 TCAAGGGCACGATTTCATTCAAT 59.237 39.130 0.00 0.00 0.00 2.57
3068 3187 3.788333 AGGGCACGATTTCATTCAATG 57.212 42.857 0.00 0.00 0.00 2.82
3069 3188 3.355378 AGGGCACGATTTCATTCAATGA 58.645 40.909 0.00 0.00 37.55 2.57
3070 3189 3.763360 AGGGCACGATTTCATTCAATGAA 59.237 39.130 8.85 8.85 46.77 2.57
3080 3199 5.503662 TTCATTCAATGAATCGTCATGGG 57.496 39.130 8.85 0.00 44.02 4.00
3081 3200 4.525996 TCATTCAATGAATCGTCATGGGT 58.474 39.130 5.36 0.00 44.02 4.51
3082 3201 5.679601 TCATTCAATGAATCGTCATGGGTA 58.320 37.500 5.36 0.00 44.02 3.69
3083 3202 6.118852 TCATTCAATGAATCGTCATGGGTAA 58.881 36.000 5.36 0.00 44.02 2.85
3084 3203 6.601217 TCATTCAATGAATCGTCATGGGTAAA 59.399 34.615 5.36 0.00 44.02 2.01
3085 3204 6.435430 TTCAATGAATCGTCATGGGTAAAG 57.565 37.500 0.00 0.00 44.02 1.85
3086 3205 4.881273 TCAATGAATCGTCATGGGTAAAGG 59.119 41.667 0.00 0.00 44.02 3.11
3087 3206 2.639065 TGAATCGTCATGGGTAAAGGC 58.361 47.619 0.00 0.00 0.00 4.35
3088 3207 2.238646 TGAATCGTCATGGGTAAAGGCT 59.761 45.455 0.00 0.00 0.00 4.58
3089 3208 3.279434 GAATCGTCATGGGTAAAGGCTT 58.721 45.455 0.00 0.00 0.00 4.35
3090 3209 2.396590 TCGTCATGGGTAAAGGCTTC 57.603 50.000 0.00 0.00 0.00 3.86
3091 3210 1.065709 TCGTCATGGGTAAAGGCTTCC 60.066 52.381 0.00 0.00 0.00 3.46
3092 3211 1.065418 CGTCATGGGTAAAGGCTTCCT 60.065 52.381 0.00 0.00 33.87 3.36
3093 3212 2.169769 CGTCATGGGTAAAGGCTTCCTA 59.830 50.000 0.00 0.00 31.13 2.94
3094 3213 3.370103 CGTCATGGGTAAAGGCTTCCTAA 60.370 47.826 0.00 0.00 31.13 2.69
3095 3214 4.595986 GTCATGGGTAAAGGCTTCCTAAA 58.404 43.478 0.00 0.00 31.13 1.85
3096 3215 5.014202 GTCATGGGTAAAGGCTTCCTAAAA 58.986 41.667 0.00 0.00 31.13 1.52
3097 3216 5.125578 GTCATGGGTAAAGGCTTCCTAAAAG 59.874 44.000 0.00 0.00 31.13 2.27
3098 3217 4.734843 TGGGTAAAGGCTTCCTAAAAGT 57.265 40.909 0.00 0.00 31.13 2.66
3099 3218 4.659115 TGGGTAAAGGCTTCCTAAAAGTC 58.341 43.478 0.00 0.00 31.13 3.01
3100 3219 4.352893 TGGGTAAAGGCTTCCTAAAAGTCT 59.647 41.667 0.00 0.00 32.85 3.24
3101 3220 5.163023 TGGGTAAAGGCTTCCTAAAAGTCTT 60.163 40.000 0.00 0.00 43.36 3.01
3102 3221 5.415077 GGGTAAAGGCTTCCTAAAAGTCTTC 59.585 44.000 0.00 0.00 40.93 2.87
3103 3222 5.121925 GGTAAAGGCTTCCTAAAAGTCTTCG 59.878 44.000 0.00 0.00 40.93 3.79
3104 3223 2.701107 AGGCTTCCTAAAAGTCTTCGC 58.299 47.619 0.00 0.00 28.47 4.70
3105 3224 1.393883 GGCTTCCTAAAAGTCTTCGCG 59.606 52.381 0.00 0.00 0.00 5.87
3106 3225 2.067013 GCTTCCTAAAAGTCTTCGCGT 58.933 47.619 5.77 0.00 0.00 6.01
3107 3226 3.248266 GCTTCCTAAAAGTCTTCGCGTA 58.752 45.455 5.77 0.00 0.00 4.42
3108 3227 3.060496 GCTTCCTAAAAGTCTTCGCGTAC 59.940 47.826 5.77 3.24 0.00 3.67
3109 3228 2.855180 TCCTAAAAGTCTTCGCGTACG 58.145 47.619 11.84 11.84 42.01 3.67
3110 3229 1.319669 CCTAAAAGTCTTCGCGTACGC 59.680 52.381 29.83 29.83 39.84 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.835389 TGAAGGAAAATTCATGACAAAAGAAAT 57.165 25.926 0.00 0.00 34.31 2.17
1 2 9.835389 ATGAAGGAAAATTCATGACAAAAGAAA 57.165 25.926 0.00 0.00 45.82 2.52
2 3 9.835389 AATGAAGGAAAATTCATGACAAAAGAA 57.165 25.926 0.00 0.00 46.64 2.52
3 4 9.263538 CAATGAAGGAAAATTCATGACAAAAGA 57.736 29.630 0.00 0.00 46.64 2.52
4 5 8.500773 CCAATGAAGGAAAATTCATGACAAAAG 58.499 33.333 0.00 0.00 46.64 2.27
5 6 7.992033 ACCAATGAAGGAAAATTCATGACAAAA 59.008 29.630 0.00 0.00 46.64 2.44
6 7 7.507829 ACCAATGAAGGAAAATTCATGACAAA 58.492 30.769 0.00 0.00 46.64 2.83
7 8 7.065120 ACCAATGAAGGAAAATTCATGACAA 57.935 32.000 0.00 0.00 46.64 3.18
8 9 6.669125 ACCAATGAAGGAAAATTCATGACA 57.331 33.333 0.00 0.00 46.64 3.58
9 10 7.967890 AAACCAATGAAGGAAAATTCATGAC 57.032 32.000 0.00 0.00 46.64 3.06
13 14 9.500785 GGAAATAAACCAATGAAGGAAAATTCA 57.499 29.630 0.00 0.00 43.04 2.57
14 15 9.500785 TGGAAATAAACCAATGAAGGAAAATTC 57.499 29.630 0.00 0.00 34.25 2.17
17 18 9.859152 AAATGGAAATAAACCAATGAAGGAAAA 57.141 25.926 0.00 0.00 40.93 2.29
18 19 9.282569 CAAATGGAAATAAACCAATGAAGGAAA 57.717 29.630 0.00 0.00 40.93 3.13
19 20 8.435982 ACAAATGGAAATAAACCAATGAAGGAA 58.564 29.630 0.00 0.00 40.93 3.36
20 21 7.972301 ACAAATGGAAATAAACCAATGAAGGA 58.028 30.769 0.00 0.00 40.93 3.36
21 22 9.150348 GTACAAATGGAAATAAACCAATGAAGG 57.850 33.333 0.00 0.00 40.93 3.46
22 23 9.927668 AGTACAAATGGAAATAAACCAATGAAG 57.072 29.630 0.00 0.00 40.93 3.02
23 24 9.703892 CAGTACAAATGGAAATAAACCAATGAA 57.296 29.630 0.00 0.00 40.93 2.57
24 25 9.083422 TCAGTACAAATGGAAATAAACCAATGA 57.917 29.630 0.00 0.00 40.93 2.57
25 26 9.703892 TTCAGTACAAATGGAAATAAACCAATG 57.296 29.630 0.00 0.00 40.93 2.82
37 38 9.965824 GAAGAAAGAAAATTCAGTACAAATGGA 57.034 29.630 0.00 0.00 0.00 3.41
38 39 9.196552 GGAAGAAAGAAAATTCAGTACAAATGG 57.803 33.333 0.00 0.00 0.00 3.16
39 40 9.971922 AGGAAGAAAGAAAATTCAGTACAAATG 57.028 29.630 0.00 0.00 0.00 2.32
41 42 9.801873 CAAGGAAGAAAGAAAATTCAGTACAAA 57.198 29.630 0.00 0.00 0.00 2.83
42 43 7.920682 GCAAGGAAGAAAGAAAATTCAGTACAA 59.079 33.333 0.00 0.00 0.00 2.41
43 44 7.425606 GCAAGGAAGAAAGAAAATTCAGTACA 58.574 34.615 0.00 0.00 0.00 2.90
44 45 6.863645 GGCAAGGAAGAAAGAAAATTCAGTAC 59.136 38.462 0.00 0.00 0.00 2.73
45 46 6.549364 TGGCAAGGAAGAAAGAAAATTCAGTA 59.451 34.615 0.00 0.00 0.00 2.74
46 47 5.363580 TGGCAAGGAAGAAAGAAAATTCAGT 59.636 36.000 0.00 0.00 0.00 3.41
47 48 5.846203 TGGCAAGGAAGAAAGAAAATTCAG 58.154 37.500 0.00 0.00 0.00 3.02
48 49 5.867903 TGGCAAGGAAGAAAGAAAATTCA 57.132 34.783 0.00 0.00 0.00 2.57
49 50 7.552458 TTTTGGCAAGGAAGAAAGAAAATTC 57.448 32.000 0.00 0.00 0.00 2.17
50 51 9.625747 TTATTTTGGCAAGGAAGAAAGAAAATT 57.374 25.926 0.00 0.00 0.00 1.82
51 52 9.625747 TTTATTTTGGCAAGGAAGAAAGAAAAT 57.374 25.926 0.00 0.00 0.00 1.82
52 53 9.454859 TTTTATTTTGGCAAGGAAGAAAGAAAA 57.545 25.926 0.00 4.47 31.80 2.29
53 54 8.888716 GTTTTATTTTGGCAAGGAAGAAAGAAA 58.111 29.630 0.00 0.00 0.00 2.52
54 55 8.264347 AGTTTTATTTTGGCAAGGAAGAAAGAA 58.736 29.630 0.00 0.00 0.00 2.52
55 56 7.791029 AGTTTTATTTTGGCAAGGAAGAAAGA 58.209 30.769 0.00 0.00 0.00 2.52
56 57 8.437360 AAGTTTTATTTTGGCAAGGAAGAAAG 57.563 30.769 0.00 0.00 0.00 2.62
57 58 8.264347 AGAAGTTTTATTTTGGCAAGGAAGAAA 58.736 29.630 0.00 0.12 0.00 2.52
58 59 7.791029 AGAAGTTTTATTTTGGCAAGGAAGAA 58.209 30.769 0.00 0.00 0.00 2.52
59 60 7.360113 AGAAGTTTTATTTTGGCAAGGAAGA 57.640 32.000 0.00 0.00 0.00 2.87
60 61 8.437360 AAAGAAGTTTTATTTTGGCAAGGAAG 57.563 30.769 0.00 0.00 0.00 3.46
61 62 9.320352 GTAAAGAAGTTTTATTTTGGCAAGGAA 57.680 29.630 0.00 0.00 0.00 3.36
62 63 8.700973 AGTAAAGAAGTTTTATTTTGGCAAGGA 58.299 29.630 0.00 0.00 0.00 3.36
63 64 8.887036 AGTAAAGAAGTTTTATTTTGGCAAGG 57.113 30.769 0.00 0.00 0.00 3.61
138 139 9.781834 CGCAATGGTAGAAGTTAAATTCAATAA 57.218 29.630 17.15 1.73 0.00 1.40
139 140 8.952278 ACGCAATGGTAGAAGTTAAATTCAATA 58.048 29.630 17.15 0.04 0.00 1.90
140 141 7.754924 CACGCAATGGTAGAAGTTAAATTCAAT 59.245 33.333 17.15 0.97 0.00 2.57
141 142 7.081349 CACGCAATGGTAGAAGTTAAATTCAA 58.919 34.615 17.15 1.41 0.00 2.69
142 143 6.607689 CACGCAATGGTAGAAGTTAAATTCA 58.392 36.000 17.15 1.71 0.00 2.57
143 144 5.511729 GCACGCAATGGTAGAAGTTAAATTC 59.488 40.000 7.56 7.56 0.00 2.17
144 145 5.183140 AGCACGCAATGGTAGAAGTTAAATT 59.817 36.000 0.00 0.00 37.23 1.82
145 146 4.700213 AGCACGCAATGGTAGAAGTTAAAT 59.300 37.500 0.00 0.00 37.23 1.40
146 147 4.069304 AGCACGCAATGGTAGAAGTTAAA 58.931 39.130 0.00 0.00 37.23 1.52
147 148 3.670625 AGCACGCAATGGTAGAAGTTAA 58.329 40.909 0.00 0.00 37.23 2.01
148 149 3.328382 AGCACGCAATGGTAGAAGTTA 57.672 42.857 0.00 0.00 37.23 2.24
149 150 2.185004 AGCACGCAATGGTAGAAGTT 57.815 45.000 0.00 0.00 37.23 2.66
150 151 3.328382 TTAGCACGCAATGGTAGAAGT 57.672 42.857 0.00 0.00 42.15 3.01
151 152 4.678509 TTTTAGCACGCAATGGTAGAAG 57.321 40.909 0.00 0.00 42.15 2.85
171 172 1.372872 GCGTTGCTGCGGGATTTTT 60.373 52.632 0.00 0.00 0.00 1.94
172 173 2.258286 GCGTTGCTGCGGGATTTT 59.742 55.556 0.00 0.00 0.00 1.82
184 185 2.587753 ATGATACCCCGCGCGTTG 60.588 61.111 29.95 21.02 0.00 4.10
185 186 1.457823 TAGATGATACCCCGCGCGTT 61.458 55.000 29.95 14.98 0.00 4.84
186 187 1.863662 CTAGATGATACCCCGCGCGT 61.864 60.000 29.95 13.36 0.00 6.01
187 188 1.154016 CTAGATGATACCCCGCGCG 60.154 63.158 25.67 25.67 0.00 6.86
188 189 0.317479 AACTAGATGATACCCCGCGC 59.683 55.000 0.00 0.00 0.00 6.86
189 190 3.928727 TTAACTAGATGATACCCCGCG 57.071 47.619 0.00 0.00 0.00 6.46
190 191 8.665685 CATATTTTTAACTAGATGATACCCCGC 58.334 37.037 0.00 0.00 0.00 6.13
191 192 9.720769 ACATATTTTTAACTAGATGATACCCCG 57.279 33.333 0.00 0.00 0.00 5.73
210 211 9.762933 AGTATCTTTTGTTTGCACAACATATTT 57.237 25.926 12.95 4.05 42.87 1.40
211 212 9.410556 GAGTATCTTTTGTTTGCACAACATATT 57.589 29.630 12.95 2.89 42.87 1.28
212 213 8.028938 GGAGTATCTTTTGTTTGCACAACATAT 58.971 33.333 12.95 8.66 37.76 1.78
213 214 7.367285 GGAGTATCTTTTGTTTGCACAACATA 58.633 34.615 12.95 7.64 37.76 2.29
214 215 6.215845 GGAGTATCTTTTGTTTGCACAACAT 58.784 36.000 12.95 3.82 37.76 2.71
215 216 5.451242 GGGAGTATCTTTTGTTTGCACAACA 60.451 40.000 9.46 9.46 37.76 3.33
216 217 4.982295 GGGAGTATCTTTTGTTTGCACAAC 59.018 41.667 0.00 0.00 37.76 3.32
217 218 4.892934 AGGGAGTATCTTTTGTTTGCACAA 59.107 37.500 0.00 0.00 36.77 3.33
218 219 4.469657 AGGGAGTATCTTTTGTTTGCACA 58.530 39.130 0.00 0.00 33.73 4.57
219 220 4.082733 GGAGGGAGTATCTTTTGTTTGCAC 60.083 45.833 0.00 0.00 33.73 4.57
220 221 4.079253 GGAGGGAGTATCTTTTGTTTGCA 58.921 43.478 0.00 0.00 33.73 4.08
221 222 3.444034 GGGAGGGAGTATCTTTTGTTTGC 59.556 47.826 0.00 0.00 33.73 3.68
222 223 4.923415 AGGGAGGGAGTATCTTTTGTTTG 58.077 43.478 0.00 0.00 33.73 2.93
223 224 5.516768 GGAAGGGAGGGAGTATCTTTTGTTT 60.517 44.000 0.00 0.00 33.73 2.83
224 225 4.018324 GGAAGGGAGGGAGTATCTTTTGTT 60.018 45.833 0.00 0.00 33.73 2.83
225 226 3.523972 GGAAGGGAGGGAGTATCTTTTGT 59.476 47.826 0.00 0.00 33.73 2.83
226 227 3.783082 AGGAAGGGAGGGAGTATCTTTTG 59.217 47.826 0.00 0.00 33.73 2.44
227 228 4.095616 AGGAAGGGAGGGAGTATCTTTT 57.904 45.455 0.00 0.00 33.73 2.27
228 229 3.805360 AGGAAGGGAGGGAGTATCTTT 57.195 47.619 0.00 0.00 33.73 2.52
229 230 3.805360 AAGGAAGGGAGGGAGTATCTT 57.195 47.619 0.00 0.00 33.73 2.40
230 231 3.805360 AAAGGAAGGGAGGGAGTATCT 57.195 47.619 0.00 0.00 33.73 1.98
231 232 8.912614 TTATATAAAGGAAGGGAGGGAGTATC 57.087 38.462 0.00 0.00 0.00 2.24
232 233 7.907280 CCTTATATAAAGGAAGGGAGGGAGTAT 59.093 40.741 0.00 0.00 39.81 2.12
233 234 7.146631 ACCTTATATAAAGGAAGGGAGGGAGTA 60.147 40.741 10.67 0.00 43.47 2.59
234 235 6.092241 CCTTATATAAAGGAAGGGAGGGAGT 58.908 44.000 0.00 0.00 39.81 3.85
235 236 6.013293 CACCTTATATAAAGGAAGGGAGGGAG 60.013 46.154 10.67 0.00 43.47 4.30
236 237 5.850028 CACCTTATATAAAGGAAGGGAGGGA 59.150 44.000 10.67 0.00 43.47 4.20
237 238 5.611408 ACACCTTATATAAAGGAAGGGAGGG 59.389 44.000 10.67 4.11 43.47 4.30
238 239 6.101296 ACACACCTTATATAAAGGAAGGGAGG 59.899 42.308 10.67 4.52 43.47 4.30
239 240 7.138054 ACACACCTTATATAAAGGAAGGGAG 57.862 40.000 10.67 5.47 43.47 4.30
240 241 7.519347 AACACACCTTATATAAAGGAAGGGA 57.481 36.000 10.67 0.00 43.47 4.20
241 242 7.614192 ACAAACACACCTTATATAAAGGAAGGG 59.386 37.037 10.67 6.31 43.47 3.95
242 243 8.575649 ACAAACACACCTTATATAAAGGAAGG 57.424 34.615 10.67 8.31 44.53 3.46
268 269 9.413048 ACATAACTTCGTTTGACTTTTGAAAAA 57.587 25.926 0.00 0.00 0.00 1.94
269 270 8.973835 ACATAACTTCGTTTGACTTTTGAAAA 57.026 26.923 0.00 0.00 0.00 2.29
270 271 8.973835 AACATAACTTCGTTTGACTTTTGAAA 57.026 26.923 0.00 0.00 0.00 2.69
271 272 8.973835 AAACATAACTTCGTTTGACTTTTGAA 57.026 26.923 0.00 0.00 34.16 2.69
281 282 4.812626 ACTCGGTCAAACATAACTTCGTTT 59.187 37.500 0.00 0.00 35.76 3.60
282 283 4.374399 ACTCGGTCAAACATAACTTCGTT 58.626 39.130 0.00 0.00 0.00 3.85
283 284 3.986277 ACTCGGTCAAACATAACTTCGT 58.014 40.909 0.00 0.00 0.00 3.85
284 285 4.985044 AACTCGGTCAAACATAACTTCG 57.015 40.909 0.00 0.00 0.00 3.79
345 346 8.537016 ACCACTTTTCATGATGAATCAAATGAT 58.463 29.630 8.90 0.00 40.69 2.45
346 347 7.898918 ACCACTTTTCATGATGAATCAAATGA 58.101 30.769 8.90 7.60 40.69 2.57
347 348 8.542497 AACCACTTTTCATGATGAATCAAATG 57.458 30.769 8.90 1.71 40.69 2.32
348 349 9.211485 GAAACCACTTTTCATGATGAATCAAAT 57.789 29.630 8.90 0.00 42.95 2.32
349 350 8.592105 GAAACCACTTTTCATGATGAATCAAA 57.408 30.769 8.90 0.00 42.95 2.69
422 423 5.583854 CAACCATTTGAATGTTTGACCAACA 59.416 36.000 7.90 0.00 40.09 3.33
423 424 5.814705 TCAACCATTTGAATGTTTGACCAAC 59.185 36.000 11.22 0.00 41.11 3.77
424 425 5.982356 TCAACCATTTGAATGTTTGACCAA 58.018 33.333 11.22 0.00 41.11 3.67
425 426 5.604758 TCAACCATTTGAATGTTTGACCA 57.395 34.783 11.22 0.00 41.11 4.02
428 429 5.523188 GCAAGTCAACCATTTGAATGTTTGA 59.477 36.000 11.22 11.22 42.89 2.69
429 430 5.293814 TGCAAGTCAACCATTTGAATGTTTG 59.706 36.000 7.44 7.44 43.52 2.93
430 431 5.294060 GTGCAAGTCAACCATTTGAATGTTT 59.706 36.000 0.00 0.00 43.52 2.83
431 432 4.810491 GTGCAAGTCAACCATTTGAATGTT 59.190 37.500 0.00 0.00 43.52 2.71
432 433 4.370917 GTGCAAGTCAACCATTTGAATGT 58.629 39.130 0.00 0.00 43.52 2.71
433 434 3.426191 CGTGCAAGTCAACCATTTGAATG 59.574 43.478 0.00 0.00 43.52 2.67
434 435 3.552684 CCGTGCAAGTCAACCATTTGAAT 60.553 43.478 0.00 0.00 43.52 2.57
435 436 2.223688 CCGTGCAAGTCAACCATTTGAA 60.224 45.455 0.00 0.00 43.52 2.69
436 437 1.336440 CCGTGCAAGTCAACCATTTGA 59.664 47.619 0.00 0.00 39.55 2.69
437 438 1.336440 TCCGTGCAAGTCAACCATTTG 59.664 47.619 0.00 0.00 0.00 2.32
438 439 1.686355 TCCGTGCAAGTCAACCATTT 58.314 45.000 0.00 0.00 0.00 2.32
439 440 1.686355 TTCCGTGCAAGTCAACCATT 58.314 45.000 0.00 0.00 0.00 3.16
440 441 1.686355 TTTCCGTGCAAGTCAACCAT 58.314 45.000 0.00 0.00 0.00 3.55
441 442 1.464734 TTTTCCGTGCAAGTCAACCA 58.535 45.000 0.00 0.00 0.00 3.67
442 443 2.793278 ATTTTCCGTGCAAGTCAACC 57.207 45.000 0.00 0.00 0.00 3.77
443 444 6.304683 GTGTATTATTTTCCGTGCAAGTCAAC 59.695 38.462 0.00 0.00 0.00 3.18
444 445 6.375377 GTGTATTATTTTCCGTGCAAGTCAA 58.625 36.000 0.00 0.00 0.00 3.18
445 446 5.106475 GGTGTATTATTTTCCGTGCAAGTCA 60.106 40.000 0.00 0.00 0.00 3.41
446 447 5.123344 AGGTGTATTATTTTCCGTGCAAGTC 59.877 40.000 0.00 0.00 0.00 3.01
447 448 5.007682 AGGTGTATTATTTTCCGTGCAAGT 58.992 37.500 0.00 0.00 0.00 3.16
448 449 5.560966 AGGTGTATTATTTTCCGTGCAAG 57.439 39.130 0.00 0.00 0.00 4.01
449 450 5.968528 AAGGTGTATTATTTTCCGTGCAA 57.031 34.783 0.00 0.00 0.00 4.08
450 451 8.911918 ATATAAGGTGTATTATTTTCCGTGCA 57.088 30.769 0.00 0.00 0.00 4.57
451 452 9.821662 GAATATAAGGTGTATTATTTTCCGTGC 57.178 33.333 0.00 0.00 31.92 5.34
462 463 8.386264 CCTCCATTCCAGAATATAAGGTGTATT 58.614 37.037 0.00 0.00 0.00 1.89
463 464 7.037297 CCCTCCATTCCAGAATATAAGGTGTAT 60.037 40.741 11.15 0.00 0.00 2.29
464 465 6.272324 CCCTCCATTCCAGAATATAAGGTGTA 59.728 42.308 11.15 0.00 0.00 2.90
465 466 5.073691 CCCTCCATTCCAGAATATAAGGTGT 59.926 44.000 11.15 0.00 0.00 4.16
466 467 5.310594 TCCCTCCATTCCAGAATATAAGGTG 59.689 44.000 11.15 3.46 0.00 4.00
467 468 5.486332 TCCCTCCATTCCAGAATATAAGGT 58.514 41.667 11.15 0.00 0.00 3.50
468 469 5.549619 ACTCCCTCCATTCCAGAATATAAGG 59.450 44.000 0.00 1.25 0.00 2.69
469 470 6.694445 ACTCCCTCCATTCCAGAATATAAG 57.306 41.667 0.00 0.00 0.00 1.73
470 471 7.313731 ACTACTCCCTCCATTCCAGAATATAA 58.686 38.462 0.00 0.00 0.00 0.98
471 472 6.875469 ACTACTCCCTCCATTCCAGAATATA 58.125 40.000 0.00 0.00 0.00 0.86
472 473 5.731924 ACTACTCCCTCCATTCCAGAATAT 58.268 41.667 0.00 0.00 0.00 1.28
473 474 5.157770 ACTACTCCCTCCATTCCAGAATA 57.842 43.478 0.00 0.00 0.00 1.75
474 475 4.014273 ACTACTCCCTCCATTCCAGAAT 57.986 45.455 0.00 0.00 0.00 2.40
475 476 3.491766 ACTACTCCCTCCATTCCAGAA 57.508 47.619 0.00 0.00 0.00 3.02
476 477 4.620086 TTACTACTCCCTCCATTCCAGA 57.380 45.455 0.00 0.00 0.00 3.86
477 478 5.896073 ATTTACTACTCCCTCCATTCCAG 57.104 43.478 0.00 0.00 0.00 3.86
478 479 6.906901 AGTAATTTACTACTCCCTCCATTCCA 59.093 38.462 7.31 0.00 37.23 3.53
479 480 7.376335 AGTAATTTACTACTCCCTCCATTCC 57.624 40.000 7.31 0.00 37.23 3.01
547 548 6.273825 ACGAGCCTATGTACAGAAAACTATG 58.726 40.000 0.33 0.00 0.00 2.23
713 753 0.672401 CGTCAAGTAACGGGGCACAT 60.672 55.000 0.00 0.00 38.96 3.21
852 892 0.386838 GCTTGTTGGCTTGCAAGACT 59.613 50.000 31.61 0.00 43.29 3.24
888 928 6.542370 TCGATCAAGCGATGGTCATATATAGA 59.458 38.462 6.62 0.00 39.27 1.98
919 959 1.233019 CTGAACTGCTGGAGTGTTGG 58.767 55.000 1.54 0.00 34.02 3.77
947 987 4.956085 TCCTTCTTTTCAACTGATCGACA 58.044 39.130 0.00 0.00 0.00 4.35
951 991 7.142021 GGTTTTCTCCTTCTTTTCAACTGATC 58.858 38.462 0.00 0.00 0.00 2.92
966 1006 3.840124 ACTGTTCTTCGGTTTTCTCCT 57.160 42.857 0.00 0.00 30.45 3.69
1152 1213 1.450312 GGTTCCTCTGATGCCACGG 60.450 63.158 0.00 0.00 0.00 4.94
1248 1309 4.658063 ACAAAAACCGGACCAAGATCATA 58.342 39.130 9.46 0.00 0.00 2.15
1260 1321 3.747529 ACTACGACCATTACAAAAACCGG 59.252 43.478 0.00 0.00 0.00 5.28
1423 1484 4.561735 ACTTGGTTAATTGGTTGACGTG 57.438 40.909 0.00 0.00 0.00 4.49
1426 1487 5.182570 GGGAGTACTTGGTTAATTGGTTGAC 59.817 44.000 0.00 0.00 0.00 3.18
1446 1512 8.979574 CGCTTTTATATTAGTTTACAGAGGGAG 58.020 37.037 0.00 0.00 0.00 4.30
1447 1513 8.480501 ACGCTTTTATATTAGTTTACAGAGGGA 58.519 33.333 0.00 0.00 0.00 4.20
1448 1514 8.658499 ACGCTTTTATATTAGTTTACAGAGGG 57.342 34.615 0.00 0.00 0.00 4.30
1465 1531 9.918630 ACTAAAGTAGTGATCTAAACGCTTTTA 57.081 29.630 10.23 0.00 37.69 1.52
1466 1532 8.828688 ACTAAAGTAGTGATCTAAACGCTTTT 57.171 30.769 10.23 0.00 37.69 2.27
1469 1535 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
1470 1536 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
1497 1563 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
1498 1564 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
1499 1565 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
1500 1566 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
1501 1567 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
1502 1568 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1503 1569 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
1504 1570 9.905171 GTTACTCCCTCCGTAAACTAATATAAG 57.095 37.037 0.00 0.00 0.00 1.73
1505 1571 9.646522 AGTTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
1507 1573 9.294614 CTAGTTACTCCCTCCGTAAACTAATAT 57.705 37.037 0.00 0.00 0.00 1.28
1508 1574 7.721399 CCTAGTTACTCCCTCCGTAAACTAATA 59.279 40.741 0.00 0.00 0.00 0.98
1509 1575 6.548993 CCTAGTTACTCCCTCCGTAAACTAAT 59.451 42.308 0.00 0.00 0.00 1.73
1510 1576 5.888161 CCTAGTTACTCCCTCCGTAAACTAA 59.112 44.000 0.00 0.00 0.00 2.24
1511 1577 5.191722 TCCTAGTTACTCCCTCCGTAAACTA 59.808 44.000 0.00 0.00 0.00 2.24
1512 1578 4.018050 TCCTAGTTACTCCCTCCGTAAACT 60.018 45.833 0.00 0.00 0.00 2.66
1513 1579 4.273318 TCCTAGTTACTCCCTCCGTAAAC 58.727 47.826 0.00 0.00 0.00 2.01
1514 1580 4.591321 TCCTAGTTACTCCCTCCGTAAA 57.409 45.455 0.00 0.00 0.00 2.01
1515 1581 4.228210 TCTTCCTAGTTACTCCCTCCGTAA 59.772 45.833 0.00 0.00 0.00 3.18
1516 1582 3.782523 TCTTCCTAGTTACTCCCTCCGTA 59.217 47.826 0.00 0.00 0.00 4.02
1517 1583 2.579860 TCTTCCTAGTTACTCCCTCCGT 59.420 50.000 0.00 0.00 0.00 4.69
1518 1584 3.294038 TCTTCCTAGTTACTCCCTCCG 57.706 52.381 0.00 0.00 0.00 4.63
1519 1585 6.203526 TCTATCTTCCTAGTTACTCCCTCC 57.796 45.833 0.00 0.00 0.00 4.30
1520 1586 7.395206 GGATTCTATCTTCCTAGTTACTCCCTC 59.605 44.444 0.00 0.00 0.00 4.30
1521 1587 7.146924 TGGATTCTATCTTCCTAGTTACTCCCT 60.147 40.741 0.00 0.00 32.95 4.20
1522 1588 7.011382 TGGATTCTATCTTCCTAGTTACTCCC 58.989 42.308 0.00 0.00 32.95 4.30
1523 1589 8.527810 CATGGATTCTATCTTCCTAGTTACTCC 58.472 40.741 0.00 0.00 32.95 3.85
1524 1590 8.527810 CCATGGATTCTATCTTCCTAGTTACTC 58.472 40.741 5.56 0.00 32.95 2.59
1525 1591 8.235230 TCCATGGATTCTATCTTCCTAGTTACT 58.765 37.037 11.44 0.00 32.95 2.24
1526 1592 8.423906 TCCATGGATTCTATCTTCCTAGTTAC 57.576 38.462 11.44 0.00 32.95 2.50
1528 1594 9.796242 ATATCCATGGATTCTATCTTCCTAGTT 57.204 33.333 31.70 5.17 36.17 2.24
1529 1595 9.796242 AATATCCATGGATTCTATCTTCCTAGT 57.204 33.333 31.70 6.21 36.17 2.57
1546 1612 8.853126 AGTCCATGACAAATGTTAATATCCATG 58.147 33.333 0.00 0.00 34.60 3.66
1574 1640 3.194968 TCTCCACCTCATCTTAACGGAAC 59.805 47.826 0.00 0.00 0.00 3.62
1579 1645 4.162320 TCACCATCTCCACCTCATCTTAAC 59.838 45.833 0.00 0.00 0.00 2.01
1651 1721 2.915659 ACGACACCTTCTCGGCCA 60.916 61.111 2.24 0.00 35.37 5.36
1660 1730 2.989824 CCACCTCGGACGACACCT 60.990 66.667 0.00 0.00 36.56 4.00
1745 1815 4.742649 TGAGCCTCCTCCGCGACT 62.743 66.667 8.23 0.00 37.29 4.18
1845 1918 5.050499 GCGATCACTATCACTTCATTTCCAG 60.050 44.000 0.00 0.00 31.93 3.86
1851 1924 3.633235 GACGCGATCACTATCACTTCAT 58.367 45.455 15.93 0.00 31.93 2.57
1869 1942 0.232303 GTTGCTTCAAGTCACCGACG 59.768 55.000 0.00 0.00 37.67 5.12
1870 1943 1.295792 TGTTGCTTCAAGTCACCGAC 58.704 50.000 0.00 0.00 0.00 4.79
1871 1944 2.143122 GATGTTGCTTCAAGTCACCGA 58.857 47.619 0.00 0.00 0.00 4.69
1872 1945 1.197721 GGATGTTGCTTCAAGTCACCG 59.802 52.381 0.00 0.00 0.00 4.94
1873 1946 1.541588 GGGATGTTGCTTCAAGTCACC 59.458 52.381 0.00 0.00 0.00 4.02
1895 1968 3.789224 CCTACGAAACAACAAAACAGCAC 59.211 43.478 0.00 0.00 0.00 4.40
1905 1978 3.396560 ACTAAGCACCCTACGAAACAAC 58.603 45.455 0.00 0.00 0.00 3.32
1906 1979 3.756933 ACTAAGCACCCTACGAAACAA 57.243 42.857 0.00 0.00 0.00 2.83
1921 1994 9.841295 TTATGCTTTATAAGGGTGGTAACTAAG 57.159 33.333 0.00 0.00 37.61 2.18
1923 1996 9.216148 TCTTATGCTTTATAAGGGTGGTAACTA 57.784 33.333 6.78 0.00 45.46 2.24
1946 2024 7.148239 CCGCCATTGTAATCTTAGAGTTTTCTT 60.148 37.037 0.00 0.00 34.79 2.52
1951 2029 3.877508 GCCGCCATTGTAATCTTAGAGTT 59.122 43.478 0.00 0.00 0.00 3.01
1955 2033 3.206150 ACAGCCGCCATTGTAATCTTAG 58.794 45.455 0.00 0.00 0.00 2.18
1956 2034 3.275617 ACAGCCGCCATTGTAATCTTA 57.724 42.857 0.00 0.00 0.00 2.10
1957 2035 2.128771 ACAGCCGCCATTGTAATCTT 57.871 45.000 0.00 0.00 0.00 2.40
1958 2036 3.492102 ATACAGCCGCCATTGTAATCT 57.508 42.857 0.00 0.00 33.85 2.40
1959 2037 4.755123 AGTAATACAGCCGCCATTGTAATC 59.245 41.667 0.00 0.00 33.85 1.75
1960 2038 4.714632 AGTAATACAGCCGCCATTGTAAT 58.285 39.130 0.00 0.00 33.85 1.89
1961 2039 4.145365 AGTAATACAGCCGCCATTGTAA 57.855 40.909 0.00 0.00 33.85 2.41
1962 2040 3.830744 AGTAATACAGCCGCCATTGTA 57.169 42.857 0.00 0.00 34.57 2.41
1963 2041 2.710096 AGTAATACAGCCGCCATTGT 57.290 45.000 0.00 0.00 0.00 2.71
1964 2042 5.932303 AGTAATAGTAATACAGCCGCCATTG 59.068 40.000 0.00 0.00 0.00 2.82
1965 2043 6.110411 AGTAATAGTAATACAGCCGCCATT 57.890 37.500 0.00 0.00 0.00 3.16
1966 2044 5.740290 AGTAATAGTAATACAGCCGCCAT 57.260 39.130 0.00 0.00 0.00 4.40
1967 2045 5.771666 AGTAGTAATAGTAATACAGCCGCCA 59.228 40.000 10.06 0.00 34.02 5.69
1968 2046 6.150809 AGAGTAGTAATAGTAATACAGCCGCC 59.849 42.308 10.06 0.00 34.02 6.13
1969 2047 7.143514 AGAGTAGTAATAGTAATACAGCCGC 57.856 40.000 10.06 0.00 34.02 6.53
1970 2048 7.607223 AGGAGAGTAGTAATAGTAATACAGCCG 59.393 40.741 10.06 0.00 34.02 5.52
1971 2049 8.866970 AGGAGAGTAGTAATAGTAATACAGCC 57.133 38.462 10.06 7.69 34.02 4.85
1978 2056 9.352191 GGTGATGAAGGAGAGTAGTAATAGTAA 57.648 37.037 0.00 0.00 0.00 2.24
1979 2057 8.500238 TGGTGATGAAGGAGAGTAGTAATAGTA 58.500 37.037 0.00 0.00 0.00 1.82
1980 2058 7.355101 TGGTGATGAAGGAGAGTAGTAATAGT 58.645 38.462 0.00 0.00 0.00 2.12
1981 2059 7.825331 TGGTGATGAAGGAGAGTAGTAATAG 57.175 40.000 0.00 0.00 0.00 1.73
1982 2060 7.201920 GCTTGGTGATGAAGGAGAGTAGTAATA 60.202 40.741 0.00 0.00 0.00 0.98
1992 2072 4.946157 ACATTTAGCTTGGTGATGAAGGAG 59.054 41.667 0.00 0.00 0.00 3.69
1993 2073 4.922206 ACATTTAGCTTGGTGATGAAGGA 58.078 39.130 0.00 0.00 0.00 3.36
1994 2074 5.649782 AACATTTAGCTTGGTGATGAAGG 57.350 39.130 0.00 0.00 0.00 3.46
1999 2079 7.834181 ACCTACATAAACATTTAGCTTGGTGAT 59.166 33.333 0.00 0.00 0.00 3.06
2003 2083 7.968405 GTCAACCTACATAAACATTTAGCTTGG 59.032 37.037 0.00 0.00 0.00 3.61
2021 2101 3.835978 TCCTCCTCAATTTCGTCAACCTA 59.164 43.478 0.00 0.00 0.00 3.08
2026 2106 1.616865 ACGTCCTCCTCAATTTCGTCA 59.383 47.619 0.00 0.00 0.00 4.35
2059 2139 3.650461 TCCCATGATCCATAATCGGTTCA 59.350 43.478 0.00 0.00 38.74 3.18
2169 2259 7.312657 TGCAGTTTTATAGAATGCTTCTCTG 57.687 36.000 10.56 4.54 41.14 3.35
2188 2278 9.661563 AAATGAATTTGACATGAATAATGCAGT 57.338 25.926 0.00 0.00 40.22 4.40
2238 2337 7.180766 ACCCATGATTTTTCAATGTCCATAACT 59.819 33.333 0.00 0.00 0.00 2.24
2239 2338 7.330262 ACCCATGATTTTTCAATGTCCATAAC 58.670 34.615 0.00 0.00 0.00 1.89
2240 2339 7.493499 ACCCATGATTTTTCAATGTCCATAA 57.507 32.000 0.00 0.00 0.00 1.90
2241 2340 8.780616 ATACCCATGATTTTTCAATGTCCATA 57.219 30.769 0.00 0.00 0.00 2.74
2242 2341 7.202029 GGATACCCATGATTTTTCAATGTCCAT 60.202 37.037 0.00 0.00 0.00 3.41
2243 2342 6.098124 GGATACCCATGATTTTTCAATGTCCA 59.902 38.462 0.00 0.00 0.00 4.02
2244 2343 6.098124 TGGATACCCATGATTTTTCAATGTCC 59.902 38.462 0.00 0.00 37.58 4.02
2245 2344 7.111247 TGGATACCCATGATTTTTCAATGTC 57.889 36.000 0.00 0.00 37.58 3.06
2271 2373 2.427453 AGATCTCCGTACAAGCAACGAT 59.573 45.455 0.00 0.00 42.90 3.73
2320 2426 0.249489 GGGCATACTACGAGCACAGG 60.249 60.000 0.00 0.00 0.00 4.00
2321 2427 0.595053 CGGGCATACTACGAGCACAG 60.595 60.000 0.00 0.00 0.00 3.66
2330 2436 2.219458 CTCGAGAGTTCGGGCATACTA 58.781 52.381 6.58 0.00 46.67 1.82
2356 2462 4.870363 ACATTACAATGACACTGCAAACC 58.130 39.130 8.89 0.00 39.67 3.27
2363 2469 6.946340 TCCATCACTACATTACAATGACACT 58.054 36.000 8.89 0.00 39.67 3.55
2377 2483 7.680730 AGTGGGTTGATATATTCCATCACTAC 58.319 38.462 8.97 0.00 32.23 2.73
2388 2494 5.726793 GTGGGATAGGAGTGGGTTGATATAT 59.273 44.000 0.00 0.00 0.00 0.86
2429 2535 4.972514 TGTGTTGTCATTGTTGCAACTA 57.027 36.364 28.61 22.52 39.01 2.24
2432 2538 5.521735 GGTAAATGTGTTGTCATTGTTGCAA 59.478 36.000 0.00 0.00 37.96 4.08
2482 2596 9.569122 AGTTGTAGGTTCAATGTGTAATTAGTT 57.431 29.630 0.00 0.00 0.00 2.24
2483 2597 8.999431 CAGTTGTAGGTTCAATGTGTAATTAGT 58.001 33.333 0.00 0.00 0.00 2.24
2484 2598 9.214957 TCAGTTGTAGGTTCAATGTGTAATTAG 57.785 33.333 0.00 0.00 0.00 1.73
2553 2667 5.779922 TGCTACCTAGTTAGATTATTGGCG 58.220 41.667 0.00 0.00 0.00 5.69
2556 2670 8.367911 TGTCCATGCTACCTAGTTAGATTATTG 58.632 37.037 0.00 0.00 0.00 1.90
2679 2796 9.553418 GTTTGCATTAAAAATGTTTCACAAAGT 57.447 25.926 0.00 0.00 0.00 2.66
2680 2797 9.771915 AGTTTGCATTAAAAATGTTTCACAAAG 57.228 25.926 0.00 0.00 0.00 2.77
2722 2839 5.217978 ACAAAAATCACATGAATGCAGGT 57.782 34.783 0.00 0.00 40.09 4.00
2726 2843 4.714851 GGCAACAAAAATCACATGAATGC 58.285 39.130 0.00 0.00 33.18 3.56
2787 2904 4.038402 GGTTAGATGGAGAATTGGCATTGG 59.962 45.833 0.00 0.00 0.00 3.16
2790 2907 4.803329 AGGTTAGATGGAGAATTGGCAT 57.197 40.909 0.00 0.00 0.00 4.40
2824 2941 4.314740 TTGGCATTGTTTAGTGGTGTTC 57.685 40.909 0.00 0.00 0.00 3.18
2833 2950 8.133627 CACAAAATGGAAAATTGGCATTGTTTA 58.866 29.630 0.00 0.00 0.00 2.01
2834 2951 6.979238 CACAAAATGGAAAATTGGCATTGTTT 59.021 30.769 0.00 0.00 0.00 2.83
2835 2952 6.505272 CACAAAATGGAAAATTGGCATTGTT 58.495 32.000 0.00 0.00 0.00 2.83
2861 2980 4.421554 CCTCCAGCCCCTCCTCCA 62.422 72.222 0.00 0.00 0.00 3.86
2864 2983 4.423209 GGACCTCCAGCCCCTCCT 62.423 72.222 0.00 0.00 35.64 3.69
2888 3007 3.711190 TCTGCTACAATTGATCCAGCCTA 59.289 43.478 13.59 3.58 0.00 3.93
2913 3032 0.550914 AAACTCCTCCAACTGTGGCA 59.449 50.000 0.00 0.00 45.54 4.92
2926 3045 0.322008 CCTCCTCCACTGCAAACTCC 60.322 60.000 0.00 0.00 0.00 3.85
2930 3049 1.371183 CGACCTCCTCCACTGCAAA 59.629 57.895 0.00 0.00 0.00 3.68
2931 3050 2.583441 CCGACCTCCTCCACTGCAA 61.583 63.158 0.00 0.00 0.00 4.08
2932 3051 2.997315 CCGACCTCCTCCACTGCA 60.997 66.667 0.00 0.00 0.00 4.41
2933 3052 2.997897 ACCGACCTCCTCCACTGC 60.998 66.667 0.00 0.00 0.00 4.40
2934 3053 1.599606 CTCACCGACCTCCTCCACTG 61.600 65.000 0.00 0.00 0.00 3.66
2935 3054 1.304547 CTCACCGACCTCCTCCACT 60.305 63.158 0.00 0.00 0.00 4.00
2936 3055 2.352032 CCTCACCGACCTCCTCCAC 61.352 68.421 0.00 0.00 0.00 4.02
2937 3056 2.037367 CCTCACCGACCTCCTCCA 59.963 66.667 0.00 0.00 0.00 3.86
2938 3057 2.037527 ACCTCACCGACCTCCTCC 59.962 66.667 0.00 0.00 0.00 4.30
2939 3058 2.352032 CCACCTCACCGACCTCCTC 61.352 68.421 0.00 0.00 0.00 3.71
2940 3059 2.169590 ATCCACCTCACCGACCTCCT 62.170 60.000 0.00 0.00 0.00 3.69
2941 3060 1.686110 ATCCACCTCACCGACCTCC 60.686 63.158 0.00 0.00 0.00 4.30
2942 3061 0.970937 TCATCCACCTCACCGACCTC 60.971 60.000 0.00 0.00 0.00 3.85
2943 3062 0.972983 CTCATCCACCTCACCGACCT 60.973 60.000 0.00 0.00 0.00 3.85
2944 3063 1.258445 ACTCATCCACCTCACCGACC 61.258 60.000 0.00 0.00 0.00 4.79
2945 3064 0.108615 CACTCATCCACCTCACCGAC 60.109 60.000 0.00 0.00 0.00 4.79
2946 3065 0.541998 ACACTCATCCACCTCACCGA 60.542 55.000 0.00 0.00 0.00 4.69
2947 3066 0.390340 CACACTCATCCACCTCACCG 60.390 60.000 0.00 0.00 0.00 4.94
2948 3067 0.036010 CCACACTCATCCACCTCACC 60.036 60.000 0.00 0.00 0.00 4.02
2949 3068 0.674895 GCCACACTCATCCACCTCAC 60.675 60.000 0.00 0.00 0.00 3.51
2950 3069 0.837691 AGCCACACTCATCCACCTCA 60.838 55.000 0.00 0.00 0.00 3.86
2951 3070 0.392193 CAGCCACACTCATCCACCTC 60.392 60.000 0.00 0.00 0.00 3.85
2952 3071 1.681666 CAGCCACACTCATCCACCT 59.318 57.895 0.00 0.00 0.00 4.00
2953 3072 2.042831 GCAGCCACACTCATCCACC 61.043 63.158 0.00 0.00 0.00 4.61
2954 3073 0.250234 TAGCAGCCACACTCATCCAC 59.750 55.000 0.00 0.00 0.00 4.02
2955 3074 0.538584 CTAGCAGCCACACTCATCCA 59.461 55.000 0.00 0.00 0.00 3.41
2956 3075 0.179062 CCTAGCAGCCACACTCATCC 60.179 60.000 0.00 0.00 0.00 3.51
2957 3076 0.179062 CCCTAGCAGCCACACTCATC 60.179 60.000 0.00 0.00 0.00 2.92
2958 3077 0.911525 ACCCTAGCAGCCACACTCAT 60.912 55.000 0.00 0.00 0.00 2.90
2959 3078 1.127567 AACCCTAGCAGCCACACTCA 61.128 55.000 0.00 0.00 0.00 3.41
2960 3079 0.036875 AAACCCTAGCAGCCACACTC 59.963 55.000 0.00 0.00 0.00 3.51
2961 3080 0.250901 CAAACCCTAGCAGCCACACT 60.251 55.000 0.00 0.00 0.00 3.55
2962 3081 1.244019 CCAAACCCTAGCAGCCACAC 61.244 60.000 0.00 0.00 0.00 3.82
2963 3082 1.074775 CCAAACCCTAGCAGCCACA 59.925 57.895 0.00 0.00 0.00 4.17
2964 3083 0.251165 TTCCAAACCCTAGCAGCCAC 60.251 55.000 0.00 0.00 0.00 5.01
2965 3084 0.704076 ATTCCAAACCCTAGCAGCCA 59.296 50.000 0.00 0.00 0.00 4.75
2966 3085 1.106285 CATTCCAAACCCTAGCAGCC 58.894 55.000 0.00 0.00 0.00 4.85
2967 3086 1.106285 CCATTCCAAACCCTAGCAGC 58.894 55.000 0.00 0.00 0.00 5.25
2968 3087 2.806945 TCCATTCCAAACCCTAGCAG 57.193 50.000 0.00 0.00 0.00 4.24
2969 3088 4.386312 CCTTATCCATTCCAAACCCTAGCA 60.386 45.833 0.00 0.00 0.00 3.49
2970 3089 4.145052 CCTTATCCATTCCAAACCCTAGC 58.855 47.826 0.00 0.00 0.00 3.42
2971 3090 4.447762 CCCCTTATCCATTCCAAACCCTAG 60.448 50.000 0.00 0.00 0.00 3.02
2972 3091 3.465588 CCCCTTATCCATTCCAAACCCTA 59.534 47.826 0.00 0.00 0.00 3.53
2973 3092 2.247372 CCCCTTATCCATTCCAAACCCT 59.753 50.000 0.00 0.00 0.00 4.34
2974 3093 2.677914 CCCCTTATCCATTCCAAACCC 58.322 52.381 0.00 0.00 0.00 4.11
2975 3094 2.246327 TCCCCCTTATCCATTCCAAACC 59.754 50.000 0.00 0.00 0.00 3.27
2976 3095 3.566351 CTCCCCCTTATCCATTCCAAAC 58.434 50.000 0.00 0.00 0.00 2.93
2977 3096 2.517980 CCTCCCCCTTATCCATTCCAAA 59.482 50.000 0.00 0.00 0.00 3.28
2978 3097 2.143602 CCTCCCCCTTATCCATTCCAA 58.856 52.381 0.00 0.00 0.00 3.53
2979 3098 1.702234 CCCTCCCCCTTATCCATTCCA 60.702 57.143 0.00 0.00 0.00 3.53
2980 3099 1.076438 CCCTCCCCCTTATCCATTCC 58.924 60.000 0.00 0.00 0.00 3.01
2981 3100 1.705745 GTCCCTCCCCCTTATCCATTC 59.294 57.143 0.00 0.00 0.00 2.67
2982 3101 1.834540 GTCCCTCCCCCTTATCCATT 58.165 55.000 0.00 0.00 0.00 3.16
2983 3102 0.473886 CGTCCCTCCCCCTTATCCAT 60.474 60.000 0.00 0.00 0.00 3.41
2984 3103 1.074775 CGTCCCTCCCCCTTATCCA 60.075 63.158 0.00 0.00 0.00 3.41
2985 3104 1.842010 CCGTCCCTCCCCCTTATCC 60.842 68.421 0.00 0.00 0.00 2.59
2986 3105 1.842010 CCCGTCCCTCCCCCTTATC 60.842 68.421 0.00 0.00 0.00 1.75
2987 3106 2.289341 CCCGTCCCTCCCCCTTAT 59.711 66.667 0.00 0.00 0.00 1.73
2988 3107 4.098235 CCCCGTCCCTCCCCCTTA 62.098 72.222 0.00 0.00 0.00 2.69
3014 3133 4.137615 GCATACCCACCCACCCCC 62.138 72.222 0.00 0.00 0.00 5.40
3015 3134 2.236959 ATTGCATACCCACCCACCCC 62.237 60.000 0.00 0.00 0.00 4.95
3016 3135 1.042559 CATTGCATACCCACCCACCC 61.043 60.000 0.00 0.00 0.00 4.61
3017 3136 1.042559 CCATTGCATACCCACCCACC 61.043 60.000 0.00 0.00 0.00 4.61
3018 3137 0.033601 TCCATTGCATACCCACCCAC 60.034 55.000 0.00 0.00 0.00 4.61
3019 3138 0.258484 CTCCATTGCATACCCACCCA 59.742 55.000 0.00 0.00 0.00 4.51
3020 3139 0.468029 CCTCCATTGCATACCCACCC 60.468 60.000 0.00 0.00 0.00 4.61
3021 3140 0.550914 TCCTCCATTGCATACCCACC 59.449 55.000 0.00 0.00 0.00 4.61
3022 3141 2.664402 ATCCTCCATTGCATACCCAC 57.336 50.000 0.00 0.00 0.00 4.61
3023 3142 3.721575 AGTTATCCTCCATTGCATACCCA 59.278 43.478 0.00 0.00 0.00 4.51
3024 3143 4.202461 TGAGTTATCCTCCATTGCATACCC 60.202 45.833 0.00 0.00 39.65 3.69
3025 3144 4.973168 TGAGTTATCCTCCATTGCATACC 58.027 43.478 0.00 0.00 39.65 2.73
3026 3145 5.471456 CCTTGAGTTATCCTCCATTGCATAC 59.529 44.000 0.00 0.00 39.65 2.39
3027 3146 5.456619 CCCTTGAGTTATCCTCCATTGCATA 60.457 44.000 0.00 0.00 39.65 3.14
3028 3147 4.467769 CCTTGAGTTATCCTCCATTGCAT 58.532 43.478 0.00 0.00 39.65 3.96
3029 3148 3.371917 CCCTTGAGTTATCCTCCATTGCA 60.372 47.826 0.00 0.00 39.65 4.08
3030 3149 3.217626 CCCTTGAGTTATCCTCCATTGC 58.782 50.000 0.00 0.00 39.65 3.56
3031 3150 3.217626 GCCCTTGAGTTATCCTCCATTG 58.782 50.000 0.00 0.00 39.65 2.82
3032 3151 2.852449 TGCCCTTGAGTTATCCTCCATT 59.148 45.455 0.00 0.00 39.65 3.16
3033 3152 2.173569 GTGCCCTTGAGTTATCCTCCAT 59.826 50.000 0.00 0.00 39.65 3.41
3034 3153 1.559682 GTGCCCTTGAGTTATCCTCCA 59.440 52.381 0.00 0.00 39.65 3.86
3035 3154 1.473434 CGTGCCCTTGAGTTATCCTCC 60.473 57.143 0.00 0.00 39.65 4.30
3036 3155 1.480954 TCGTGCCCTTGAGTTATCCTC 59.519 52.381 0.00 0.00 40.89 3.71
3037 3156 1.568504 TCGTGCCCTTGAGTTATCCT 58.431 50.000 0.00 0.00 0.00 3.24
3038 3157 2.622064 ATCGTGCCCTTGAGTTATCC 57.378 50.000 0.00 0.00 0.00 2.59
3039 3158 3.938963 TGAAATCGTGCCCTTGAGTTATC 59.061 43.478 0.00 0.00 0.00 1.75
3040 3159 3.950397 TGAAATCGTGCCCTTGAGTTAT 58.050 40.909 0.00 0.00 0.00 1.89
3041 3160 3.410631 TGAAATCGTGCCCTTGAGTTA 57.589 42.857 0.00 0.00 0.00 2.24
3042 3161 2.270352 TGAAATCGTGCCCTTGAGTT 57.730 45.000 0.00 0.00 0.00 3.01
3043 3162 2.496899 ATGAAATCGTGCCCTTGAGT 57.503 45.000 0.00 0.00 0.00 3.41
3044 3163 2.749076 TGAATGAAATCGTGCCCTTGAG 59.251 45.455 0.00 0.00 0.00 3.02
3045 3164 2.789213 TGAATGAAATCGTGCCCTTGA 58.211 42.857 0.00 0.00 0.00 3.02
3046 3165 3.574284 TTGAATGAAATCGTGCCCTTG 57.426 42.857 0.00 0.00 0.00 3.61
3047 3166 3.763360 TCATTGAATGAAATCGTGCCCTT 59.237 39.130 5.21 0.00 36.11 3.95
3048 3167 3.355378 TCATTGAATGAAATCGTGCCCT 58.645 40.909 5.21 0.00 36.11 5.19
3049 3168 3.781079 TCATTGAATGAAATCGTGCCC 57.219 42.857 5.21 0.00 36.11 5.36
3059 3178 4.525996 ACCCATGACGATTCATTGAATGA 58.474 39.130 16.41 3.29 40.79 2.57
3060 3179 4.906065 ACCCATGACGATTCATTGAATG 57.094 40.909 16.41 10.87 40.79 2.67
3061 3180 6.039717 CCTTTACCCATGACGATTCATTGAAT 59.960 38.462 11.64 11.64 40.79 2.57
3062 3181 5.356751 CCTTTACCCATGACGATTCATTGAA 59.643 40.000 0.75 0.75 40.79 2.69
3063 3182 4.881273 CCTTTACCCATGACGATTCATTGA 59.119 41.667 0.00 0.00 40.79 2.57
3064 3183 4.498009 GCCTTTACCCATGACGATTCATTG 60.498 45.833 0.00 0.00 40.79 2.82
3065 3184 3.632145 GCCTTTACCCATGACGATTCATT 59.368 43.478 0.00 0.00 40.79 2.57
3066 3185 3.117888 AGCCTTTACCCATGACGATTCAT 60.118 43.478 0.00 0.00 43.80 2.57
3067 3186 2.238646 AGCCTTTACCCATGACGATTCA 59.761 45.455 0.00 0.00 35.73 2.57
3068 3187 2.919228 AGCCTTTACCCATGACGATTC 58.081 47.619 0.00 0.00 0.00 2.52
3069 3188 3.279434 GAAGCCTTTACCCATGACGATT 58.721 45.455 0.00 0.00 0.00 3.34
3070 3189 2.421529 GGAAGCCTTTACCCATGACGAT 60.422 50.000 0.00 0.00 0.00 3.73
3071 3190 1.065709 GGAAGCCTTTACCCATGACGA 60.066 52.381 0.00 0.00 0.00 4.20
3072 3191 1.065418 AGGAAGCCTTTACCCATGACG 60.065 52.381 0.00 0.00 0.00 4.35
3073 3192 2.808906 AGGAAGCCTTTACCCATGAC 57.191 50.000 0.00 0.00 0.00 3.06
3074 3193 4.938575 TTTAGGAAGCCTTTACCCATGA 57.061 40.909 0.00 0.00 34.61 3.07
3075 3194 5.016831 ACTTTTAGGAAGCCTTTACCCATG 58.983 41.667 0.00 0.00 34.61 3.66
3076 3195 5.015284 AGACTTTTAGGAAGCCTTTACCCAT 59.985 40.000 0.00 0.00 34.61 4.00
3077 3196 4.352893 AGACTTTTAGGAAGCCTTTACCCA 59.647 41.667 0.00 0.00 34.61 4.51
3078 3197 4.919793 AGACTTTTAGGAAGCCTTTACCC 58.080 43.478 0.00 0.00 34.61 3.69
3079 3198 5.121925 CGAAGACTTTTAGGAAGCCTTTACC 59.878 44.000 0.00 0.00 34.61 2.85
3080 3199 5.390673 GCGAAGACTTTTAGGAAGCCTTTAC 60.391 44.000 0.00 0.00 34.61 2.01
3081 3200 4.694037 GCGAAGACTTTTAGGAAGCCTTTA 59.306 41.667 0.00 0.00 34.61 1.85
3082 3201 3.502595 GCGAAGACTTTTAGGAAGCCTTT 59.497 43.478 0.00 0.00 34.61 3.11
3083 3202 3.075148 GCGAAGACTTTTAGGAAGCCTT 58.925 45.455 0.00 0.00 34.61 4.35
3084 3203 2.701107 GCGAAGACTTTTAGGAAGCCT 58.299 47.619 0.00 0.00 37.71 4.58
3085 3204 1.393883 CGCGAAGACTTTTAGGAAGCC 59.606 52.381 0.00 0.00 0.00 4.35
3086 3205 2.067013 ACGCGAAGACTTTTAGGAAGC 58.933 47.619 15.93 0.00 0.00 3.86
3087 3206 3.300066 CGTACGCGAAGACTTTTAGGAAG 59.700 47.826 15.93 0.00 41.33 3.46
3088 3207 3.236816 CGTACGCGAAGACTTTTAGGAA 58.763 45.455 15.93 0.00 41.33 3.36
3089 3208 2.855180 CGTACGCGAAGACTTTTAGGA 58.145 47.619 15.93 0.00 41.33 2.94
3090 3209 1.319669 GCGTACGCGAAGACTTTTAGG 59.680 52.381 26.17 0.00 41.33 2.69
3091 3210 2.673196 GCGTACGCGAAGACTTTTAG 57.327 50.000 26.17 0.00 41.33 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.