>input_sequence_60353
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-----------------ATGTCTCCTGCCAGCTCGTTCGCGTCGCTCTGCCGGCACAGGCTGATCCACATCCACTGCACC
ACCCGCCTCGGCTGCGACAACCCGCCTGCCACGG---CGGCGCATTTTCTGGCGTTGGATCGGCGGAGATCGTTTTCGTC
CTCTGGCCTGCGCCGTGGCATCAGAGGAACCAGGAGCAGCGGCGGCGGCGCAGGTGGCACAGGACGACCTGCTGCAGGTT
TCTCCACCTGGTAATCCAACCAATTTTCTATGATCTTGGTCCGGTTTTTGTAATGGTCGTAGTACAGCTTACATTCGTAA
ACTGCCCTTGCAACTCTCTGTTCTTCTTTTGTCAGGGCAAGACTGGCAATTGGCTCCACTGTTGCTGTCGCGGCGCCGTT
CCTGCACTCCAAATCGGCGTCGATTCTGCGGATCGGAAGTAAGCACGTC-----AACCAATTAACCAAGTACTCCCTCTG
TAAACTAATATAAAAGCGTTTAGATCACTACTTTAGTATTCTAAACACTCTTATATTAGTTTACGGAGGGAGTAACTAGG
AAGATAGAATCCATGGATATTAACATTTGTCATGGACTGGTTCCG----TTAAGATGAGGTGGAGATGGTGAAGGACGCC
GCCGAGACCGCGGCGGAGGTCGTGGAGGAGGTGGCCACGGTGGCCGAGAAGGTGTCGTCCGAGGTGGCCGGGCATCTGCC
GGAGGACGGCAGGCTGAGACGCGCCGCGGTGGTGGTCGAGCACGCCTCCAAGGAAGTCGCGGAGGAGGCTCATCTTGCAC
GAGACATCATCCACAAGGTAGTCCGATTGCTT--TTTTGAGTTCTCTTGCAATCTTAAGCAACTG-CTTTTGGTCGACTG
GAAATGAAGTGATAGTGATCGCGTCGGTGACTTGAAGCAACATCCCAGTGCTGTTTTGTTGTTTCGTAGGGTGCTTAG--
---TTACCACCCTTATAAAGCATAAGAAAACTCTAAGATTACAATGGCGGCTGTATTACTATTACTA--CTCTCCTTCAT
CACCAAGCTAAATGTTTATGTAGGTTGACGAAATTGAGGAGGACGTCAAGGCAATTATTGAACCGATTATGGATCATGGG
AAGCACCAAAGGAAGCATTTAGAAAAGTAG--------------------------------------------------
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>chr1D_1_TraesCS1D01G394400
ATTTCTTTTGTCATGAATTTTCCTTCATTGGTTTATTTCCATTTGTACTGAATTTTCTTTCTTCCTTGCCAAAATAAAAC
TTCTTTACTACTATCTATTTTTTGGTTATTACTACTATTAAATATTTGTACCACAATTTTATTGAATTTAACTTCTACCA
TTGCGTGCTAAAAAAATCCCGCAGCAACGCGCGGGGTATCATCTAGTTAAAAATATGTTGTGCAAACAAAAGATACTCCC
TCCCTTCCTTTATATAAGGTGTGTTTGTTTTTTCAAAAGTCAAACGAAGTTATGTTTGACCGAGTTTTTTTAGAAAAATA
CCAATATCCATAATATAAAATTTATATCATTTGATTCATCATGAAAAGTGGTTTCATATTTTATCTATTTGGTATTTTAG
ATGTAGTTAGTTTATTCTATAATGTTGGTCAAACATTCAAATGGTTGACTTGCACGGAAAATAATACACCTTATATTCTG
GAATGGAGGGAGTAGTAAATTACTCCATTGTGTTAGATTCTATTTTATTTTTATTCAAGAAACATGGCATAGTTTTCTGT
ACATAGGCTCGTAAGCATAAAAGAATGTCTTACATGGATATTTTTGTAAA-TGGCAGCAACAAAATCTAGTTTAGGACTA
GACAAATATAATAAGAAAAGAGTGAAAAGGAAAAAAGAAACATTACATTG------------------------------
--------TGTTATGTGTTAGATGCATCATGCATGTGCCCCGTTACTTGACGCTTTGGGCAATCATGGACAGCTTAATCA
GCCACGCTGATACTTGCAAGGTATGTATGCGAGTTTACGCGCTGCCGTGCACACTCCGCACGGATTCATCATCCACCAGC
TCGATTAGATAAGTCTTGCAAGCCAACAAGCAACATTTTTTGCAAGGTCTATATATGACCATCGCTTGATCGATGCCCCC
AACACTCCAGCAGTTCAGTTTTTCAGTGTCGATCAGTTGAAAAGAAGGAGAAAA-CCGAAGAACAGTTGATCCGC-----
------------TGGACATGTCTCCTGCCAGCTCGTTCGCGTCGCTCTGCCGGCACAGGCTGATCCACATCCACTGCACC
ACCCGCCTCGGCTGCGACAACCCGCCTGCCACGG---CGGCGCATTTTCTGGCGTTGGATCGGCGGAGATCGTTTTCGTC
CTCTGGCCTGCGCCGTGGCATCAGAGGAACCAGGAGCAGCGGCGGCGGCGCAGGTGGCACAGGACGACCTGCTGCAGGTT
TCTCCACCTGGTAATCCAACCAATTTTCTATGATCTTGGTCCGGTTTTTGTAATGGTCGTAGTACAGCTTACATTCGTAA
ACTGCCCTTGCAACTCTCTGTTCTTCTTTTGTCAGGGCAAGACTGGCAATTGGCTCCACTGTTGCTGTCGCGGCGCCGTT
CCTGCACTCCAAATCGGCGTCGATTCTGCGGATCGGAAGTAAGCACGTC-----AACCAATTAACCAAGTACTCCCTCTG
TAAACTAATATAAAAGCGTTTAGATCACTACTTTAGTATTCTAAACACTCTTATATTAGTTTACGGAGGGAGTAACTAGG
AAGATAGAATCCATGGATATTAACATTTGTCATGGACTGGTTCCG----TTAAGATGAGGTGGAGATGGTGAAGGACGCC
GCCGAGACCGCGGCGGAGGTCGTGGAGGAGGTGGCCACGGTGGCCGAGAAGGTGTCGTCCGAGGTGGCCGGGCATCTGCC
GGAGGACGGCAGGCTGAGACGCGCCGCGGTGGTGGTCGAGCACGCCTCCAAGGAAGTCGCGGAGGAGGCTCATCTTGCAC
GAGACATCATCCACAAGGTAGTCCGATTGCTT--TTTTGAGTTCTCTTGCAATCTTAAGCAACTG-CTTTTGGTCGACTG
GAAATGAAGTGATAGTGATCGCGTCGGTGACTTGAAGCAACATCCCAGTGCTGTTTTGTTGTTTCGTAGGGTGCTTAG--
---TTACCACCCTTATAAAGCATAAGAAAACTCTAAGATTACAATGGCGGCTGTATTACTATTACTA--CTCTCCTTCAT
CACCAAGCTAAATGTTTATGTAGGTTGACGAAATTGAGGAGGACGTCAAGGCAATTATTGAACCGATTATGGATCATGGG
AAGCACCAAAGGAAGCATTTAGAAAAGTAGATTTTTTTTTCTTTGTAGCCTAGATTCATCCGGGCCG----------CTC
ATGGGACCGCGGAGACAACAGAGAAGCATTCTATAAAACTGCATTATTCATGTCAAATTCATTTTCACAATA--------
-AAAATAAGTATATGGAGTTATGGACATTGAAAAATCATGGGTATC---CATATCGTTGCTTG----TACGGAGATCTTA
TCTTAGGAGTCGAGAAATATTTTTTCCTGTGCTCGTAGTATGCCCGAACTCTCGAGGCCATGGTTTGCAGTGTCATTGTA
ATGTAGTGATGGAATATATCAACCCACTCCTATCCCACAAACTCTTGCAAATGGTAGTTGCAACAATG--------ACAA
CACATTTACCAAAATAACAAATATAATGTAAAAAAAACTAATTACACATTGAACCTACAACTGATCATTAGATCTTTGTT
GAAAAACTAATTATTAGATCAACTAACGCCAATAATCTAACTAGGTAGCATGGACACTAATATAACCAAACGATATACAT
AACACAATATTCTAGGCAACACGACCGATGC---CACATCTTTGTGTTGTATAATTTTTATCTATATTATTAAATACTTT
GTGAAACATTTTTAATGCAAACTAATTTATTTATTTTCACCTGCATTCATGTGATTTTTGTTGCCAATCAAAAAGAACTC
TTGCAAAAGCATATATAATGATACCAATGCCAATTCTCCATCTAACCTAATAAACAACAAGAACACCACTAAAC--AATG
CCAATTTTCCATTTTGTGGTGGAGGAGGGGCTGGAGGTCCAATGGATAGGCTGGATCAATTGTAGCAGAGCTGCCACAGT
TGGAGGAGTTTGCAGTGGAGGAGGTCGGTGAGGTGGATGAGTGTGGCTGCTAGGGTTTGGAATGGATAAGGGGGAGGGAC
GGGGCGGGGCCGGGGGGTGGGTGGGTATGCAATGGAGGATAACTCAAGGGCACGATTTCATTCAATGAATCGTCATGGGT
AAAGGCTTCCTAAAAGTCTTCGCGTACGC
>chr1A_493
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------------TAATAAATTACTCCACTGCGTTAAATTTTATTTTATTTTTATTCAAGAAACATGGTATAGTTTTCTGT
ACATAGGCTCGTAAGC-AAAAAAAATGTCTTACATGGATATTTTTGTAAAAATGGCAGAATAAATTATATTTTAGGACTA
GAAAAATATAATGCCAAAAGAGTGAAAAGGAAAAAAGAAACATCACATTG------------------------------
--------TGTTGTGTGTTAGATGCATCATGCGTGTGCCCCGTTACTTGACGCTTTGGGCAATCATGGCCAGCTTAATCA
GCCACGCTGATACTTGCAAGGTATGTATGCGAGCATACGCGCTGCCGTGCACACTCCGCACAGATTCATCATCCACCACC
TCGATTAGATACGTCCTGCAAGCCAACAAGCAACA-TTTTTGCAAGGCCTATATATGACTATCGCTTGATCGGTGCCCGC
AACACTCCAGCAGTTCAGTTTTCAT-CGTCAATCAGTTGAAAAGAGGCAGAAAAAACGAAGAACAGTTCAGCAGCATCGA
TCCGGTCGGCCGTGGACATGTCTCCGGCCAGCTCGTTCGCGTCGCTCTGCCGGCGCAGGCTG------ATCCACTGCACC
ACCCGCCTCGGCTGCGACAACCAGCCAGCCACGG---CGGCGCATTTTCTGGCGCTGGATCGGCGGAGATCGTTTTCGTC
CTCTGGCCTGCGTCGTGGCATCGGAGGAACCAGGAGCAGCGGCGGCGGCGCAGGTGGCACAGGACGACCTGCTGCAGGTT
TCTCCACCTGGTAATCCAATCAATTTTCCATGATCTTGGTTCGGTTTTTGTAATGGTCATAGTACAGCTTACATTCGTGA
ACTGCC-TTGCAACTCTCTGTTCTTCTTTTGTCAGGGCAAGACTGGCAATTGGCTCCACTGTTGCTATCGCGGCGCCGTT
CCTGCACTCCAAACCGGCGTCGATTCTGCGGATCGGAAGTAAGTACATCAACCAAACCAAGTAACCAAGTA---------
------------------------------------------------------------------------------GG
AAGATAGAATCAATGGATATTAACATTTGTCATGGACTGCTTCCA----TTAAGATGAGGTGGAGATGGTGAAGGACGCC
GCCGAGACCGCGGCGGAGGTCGTGGAGGAGGTGGCCACGGCGGCCGAGAGGGTGTCGTCCGAGGTGGCCGGGCATCTGCC
GGAGGACGGCCGGCTGAGACGCGCCGCCGTGGCAGTCGAGCACGCCTCCAAGGAGGTCGCGGAGGAGGCTCATCTTGCAC
GAGACATCATCCACAAGGTAGTCCGGTTACTT--TTG-GAGTTCTCTTGCAATCTTAAGCAACCTACTTTTGGTCGATTG
CAAGTGAAGTGAGAGTGATCC-----GTGACTTGAAGCAACATCCCAACGCTGTTTTTGTGTTTCTTGCTGTG---AGGG
TGCTTACCACCTTTATAAAGCATCAGAATACT----------------------------ATTACTATTCT---CTTCCT
CAGCAAGCAAAATGTTTATGCAGGTCGATGAAATTGAGGAGGACGTCAAGGCAATTATCGAACCGATTATGGATCATGGG
AAGCACGAGAGGAAGCATTTAGAAAAGTAGAT-TTTTTTTCTTTGTAGCCTAGATTCATCCAGGCCGATCCCGCTGTCTC
ATGGGACCGCGGAGACAATAGAGAAGCATTCTATAAAGCTGCATTATTCATGTCGAATTCATTTTTCCAATATTAAAAAC
CAAAATAAGTATATGGG--------CATTGAAAAATCATGGGTATC---CATGTCGTTGCTTGCTTGTACGGAGATCTTA
TCTTACGAGTCGTGAAATGTATTTTT-TGTGCTCGAAGTATGCCCGAACTCTGGAGGCCATCGTTTGCGGTGTCATTGTA
ATATAGTGATGGAGTATATCAACCCACTCCTATCCCACACACTCTTGCAAATGGCAGCTGCAACAATTTAAATAGAACAA
CACATTTACCAAAATAACTAATATATTGTAAAAAA---TAATTACACATGAAACATACAATTAATTATTAGATCTTTGTC
GAAAAACTAATTATTAGATCAACTAATGCTAATAATCTAACTAGGTAGCATGGACACTAATATAACCAAACAATATACAT
AACACAATATTCTAGGCAACACGACCGATGCGATCACATGTTTGTGCTGTATATATTTTTTATCTATATTTTAAA-----
----------------------TAATTTATTTATTTTCCCCTCCATTCATGTGATTTTTGTTGCCAATCAAAAAGAACTC
TCGCAAAAGCATATATAATGATAACAGTGCCAATTCTCCATCTAACCTAATAAACAACAAAAACACCACGCCAAGTAATG
CCAATTTTGCATTTTGTGGCGGGGGAGGGGCTGGAGGTCCAATGGACAGGCTGGATCAAGTGTAGCAGAGCGGCCACAGT
TGGACGAG------------------------------------------------------------------------
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>chr1B_493
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------------TAATAAATTACTCCACTGCGTTAAATTTTATTTTATTTTTATTCAAGAAACATGGTATACTTTTCTGT
ACATAGGCTCGTAAGCAAAAAAGAATGTCTTACATGGATATTTTTGTAAAATGGCAGCAATATCTTATATTTCAGGACTA
GAAAAATATAATAACAAAAGAGCGAAAAGGAAGAAAGAAACATTACATTGTGTTGTGTGTGTGTGTGTGTTTTTTTTGAA
GTTCATTGTGTTGTGTGTTAGATGCATCATGCGTGTGGCCCATTACTT-ACGCTTTGGGCAATCATGGCCAGCTTAATCA
GCCACGCTGATACTTGCAAGGTATGTATGCGAGTATACGCGCTGCCGTGCACACTCCGCACAGATTCACCATCCACCAGC
TCGATTAGATGCGTCTTGCAAGCCAACAAGCAACA-TTTTTGCAAGGCCTATATATGGCTATGGCTAGATCGATGCCCGC
AACACTCCAGCAGTTCAGATTTTCAGCGTCAATCAGTTGAAAAGAGGGAGAAAAACCGAAGAACAGTTGATCCGC-----
------------TGGACATGTCTCCTGCCAGCTCGTTCGCGTCGCTTTGCCTGCGCAGGCTGATCCACATCCACTGCACC
ACCCGCCTCGGCTGCGACAACCCGCCAGCCACGGCGGCGGCGCACTTTCTGGCGTTGGATCGGCGGAGATCGTTTGCGTC
CTCTGGCCTGCGTCGTGGCATCAGAGAAACCGGTAGCAGCGGCGGCGGCGCAGGTGGCAGAGGACGACCTGCTGCAGGTT
TCTCCACCTGGTAATCCAACAAGTTTTCCTTGATCTTGGTTCGGTTTTTGTAATGGCCATACTACAGCTTACAATATTAA
ACTGCCCTTGCAACTCTGTGTTCTTCTTTTGTCAGGGCAAGACTGGCAATTGGCTCCACTGTTGCTATCGCGGCACCATT
CTTGCACTCCAAATCGGCGTCGATTCTGCGGATCGGAAGTAAGTACATC-----AACCAATTAACCAAGTA---------
------------------------------------------------------------------------------GG
AAGATAGAATCAATGGGTATTAACATTTGTCATGGACTGCTTCCATTAATTAAGATGAGGTGGAGATGGTGAAGGACGCC
GCCGAGACCGCGGCGGAGGTCGTGGAGGAGGTGGCCACGGCGGCCGAGAGGGTGTCGTCCGAGGTGGCCGGGCATTTGCC
GGAGGACGGCAGGCTGAGACGCGCCGCCGTGGCAGTCGAGCACGCCTCCAAGGAGGTCGCGGAGGAGGCTCATCTTGCAC
GAGACATCATCCACAAGGTAGTCGTCCGATTGCCTTTTGAGTTTTCTTGCAATCTTAAGCAACTG-CTTCTGGTCGATTG
GAAGTGAAGTGATAGTGATCG-----GTGACTTGAAGCAACATCCCAATGCTGTTTTTGTGTTTCTTGCTGTCATCAGGG
TGCTTACCACCCTTATAAAGCATCAGAATACT----------------------------ATTACTA--CT---CTCCCT
CAGCAAGCAAAATGTTTATGCAGGTCGACGAAATTGAGGAGGACGTCAAGGCAATTATCGAACCGATTATGGATCATGGG
AAGCACGAGAGGAAGCATTTACAAAAGTAGATA--TTTTTCTTTGCAGCCTAGATTCGTCCGGGCCGGTCACACTGTCTC
ATGGGACCGTAGAGACAATAGAGAAGCATTCTATAAAGCTGCATCATCTATGTCAAATTCATTTTTACAATGTTACGAAC
CAAAATAAGTATATGTG--------CATTGAAAAATCATGGGTATCGTCCATGTCGTT-CTTGCTTGTACGGAGACCTTA
TCTTACCAATCGAGAAAGATTTTTCT-CGTGCTTGAAGTATGCCCGATCTCTCG--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--S------------S--S----S---S---------------------------S------------
-----------------S------------------------------------------S---S-S--S----------
--S-----------S-----------------------------------------------------------------
------------S-------------------S-----------------------------------S-----------
----------------------------------S--------------------------S------------------
-----------S-----------------------S-----------S-----------S------------------S-
--------------------------S---S--------------S----------------------------------
------------------------------------------------------S-------------------------
--------------------------S-----------------------------------------------------
------------S-------------------------------------------------------------------
----------------------------S-----------S-----------------S---------------------
------------------------------------------------------------------S-------------
-------------------------------------------S--S------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-----------S---------------------------S----S-----------------------------------
----------------------------------------S--------S------------------------------
---------------------------S----SS--------------------S-------------------------
-------------------------S--S------------------------------------------------S--
---S-----------------SSSSS---------------------S---------SS------S-SSS---S-S----
-----------------------S----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SSS----S-
--S-----S-----------S----S--------------------------------S---------------------
------S-S-----------------------S-----------------------------------------------
------------------S------------------S---------------------------S--------------
----------------SSSSSSSSS---------------------------S---------------------------
-----S-------------------SS--------S-------------------------S------S-----------
--S----------S-------------------------S--------------S--S---------S------------
------------------S------S---------SSS-----------SS---S-----S-S--S-------------S
--------------------------S--S-----------------------------------------S--------
---------------------------------------S------S------SS----S-S-S---SS--S--SSSSSS
SSSSSSSSSSSSSSSSSSSSSS----------------S---S-------------------------------------
-S---------------------S--S---------------------------------S--------SSS-S------
--------S----------S--S-----------------------S------------S-----------S--------
----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_208
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----------------------------GCGCGGGGTATCATCTAGTT--------------------------------
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>reverse_1942
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---------------------CGTCGGTGACTTGAAGCAAC---------------------------------------
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>forward_1484
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------------------------TCTGCGGATCGGAAGTAAGC------------------------------------
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>reverse_3137
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----------------GTGGGTGGGTATGCAATGGA--------------------------------------------
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