Multiple sequence alignment - TraesCS1D01G381100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G381100 chr1D 100.000 2291 0 0 1 2291 456198792 456201082 0.000000e+00 4231.0
1 TraesCS1D01G381100 chr1D 84.731 465 45 16 869 1328 456132344 456132787 2.090000e-120 442.0
2 TraesCS1D01G381100 chr1B 88.113 1918 129 42 238 2119 626600281 626602135 0.000000e+00 2187.0
3 TraesCS1D01G381100 chr1B 86.414 449 37 17 869 1312 626594966 626595395 9.580000e-129 470.0
4 TraesCS1D01G381100 chr1B 84.926 471 41 19 869 1328 626507404 626506953 1.250000e-122 449.0
5 TraesCS1D01G381100 chr1B 90.449 178 17 0 2114 2291 626603931 626604108 3.800000e-58 235.0
6 TraesCS1D01G381100 chr1B 79.204 226 32 12 3 217 624996484 624996263 2.370000e-30 143.0
7 TraesCS1D01G381100 chr1A 90.130 1074 62 22 382 1430 549665883 549666937 0.000000e+00 1356.0
8 TraesCS1D01G381100 chr1A 85.867 467 41 14 869 1328 549637847 549638295 7.410000e-130 473.0
9 TraesCS1D01G381100 chr1A 86.799 303 25 8 1463 1759 549666936 549667229 7.890000e-85 324.0
10 TraesCS1D01G381100 chr1A 95.455 110 5 0 2169 2278 549667230 549667339 2.340000e-40 176.0
11 TraesCS1D01G381100 chr1A 84.663 163 14 8 217 370 549665740 549665900 3.940000e-33 152.0
12 TraesCS1D01G381100 chr1A 79.372 223 36 7 3 219 381127247 381127029 5.100000e-32 148.0
13 TraesCS1D01G381100 chr3D 82.353 221 33 3 4 219 410981239 410981458 1.080000e-43 187.0
14 TraesCS1D01G381100 chr3D 80.822 219 29 8 3 215 277068114 277067903 2.360000e-35 159.0
15 TraesCS1D01G381100 chrUn 81.279 219 31 5 3 216 27602200 27602413 3.910000e-38 169.0
16 TraesCS1D01G381100 chr5B 80.909 220 34 6 3 217 37008871 37009087 1.410000e-37 167.0
17 TraesCS1D01G381100 chr5B 93.103 58 4 0 1730 1787 276949097 276949040 4.060000e-13 86.1
18 TraesCS1D01G381100 chr6D 83.069 189 24 5 3 185 456515176 456515362 5.060000e-37 165.0
19 TraesCS1D01G381100 chr5D 79.638 221 37 5 3 217 386176469 386176251 3.940000e-33 152.0
20 TraesCS1D01G381100 chr5A 78.924 223 40 4 5 221 649252311 649252090 6.600000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G381100 chr1D 456198792 456201082 2290 False 4231 4231 100.00000 1 2291 1 chr1D.!!$F2 2290
1 TraesCS1D01G381100 chr1B 626600281 626604108 3827 False 1211 2187 89.28100 238 2291 2 chr1B.!!$F2 2053
2 TraesCS1D01G381100 chr1A 549665740 549667339 1599 False 502 1356 89.26175 217 2278 4 chr1A.!!$F2 2061

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.033642 TGTATGCGGACAACGTTGGA 59.966 50.0 30.34 6.63 46.52 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 1535 0.463833 CAACGCCCATCCCTCCTTAC 60.464 60.0 0.0 0.0 0.0 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.531622 TTTGTATGCTATGTTTGGTTGATTTG 57.468 30.769 0.00 0.00 0.00 2.32
29 30 7.225784 TGTATGCTATGTTTGGTTGATTTGT 57.774 32.000 0.00 0.00 0.00 2.83
30 31 7.089538 TGTATGCTATGTTTGGTTGATTTGTG 58.910 34.615 0.00 0.00 0.00 3.33
31 32 4.305769 TGCTATGTTTGGTTGATTTGTGC 58.694 39.130 0.00 0.00 0.00 4.57
32 33 4.039004 TGCTATGTTTGGTTGATTTGTGCT 59.961 37.500 0.00 0.00 0.00 4.40
33 34 5.242615 TGCTATGTTTGGTTGATTTGTGCTA 59.757 36.000 0.00 0.00 0.00 3.49
34 35 6.071447 TGCTATGTTTGGTTGATTTGTGCTAT 60.071 34.615 0.00 0.00 0.00 2.97
35 36 6.813152 GCTATGTTTGGTTGATTTGTGCTATT 59.187 34.615 0.00 0.00 0.00 1.73
36 37 7.331687 GCTATGTTTGGTTGATTTGTGCTATTT 59.668 33.333 0.00 0.00 0.00 1.40
37 38 9.206870 CTATGTTTGGTTGATTTGTGCTATTTT 57.793 29.630 0.00 0.00 0.00 1.82
38 39 7.475771 TGTTTGGTTGATTTGTGCTATTTTC 57.524 32.000 0.00 0.00 0.00 2.29
39 40 7.271511 TGTTTGGTTGATTTGTGCTATTTTCT 58.728 30.769 0.00 0.00 0.00 2.52
40 41 8.417106 TGTTTGGTTGATTTGTGCTATTTTCTA 58.583 29.630 0.00 0.00 0.00 2.10
41 42 9.423061 GTTTGGTTGATTTGTGCTATTTTCTAT 57.577 29.630 0.00 0.00 0.00 1.98
42 43 9.638239 TTTGGTTGATTTGTGCTATTTTCTATC 57.362 29.630 0.00 0.00 0.00 2.08
43 44 7.771183 TGGTTGATTTGTGCTATTTTCTATCC 58.229 34.615 0.00 0.00 0.00 2.59
44 45 6.912591 GGTTGATTTGTGCTATTTTCTATCCG 59.087 38.462 0.00 0.00 0.00 4.18
45 46 7.201696 GGTTGATTTGTGCTATTTTCTATCCGA 60.202 37.037 0.00 0.00 0.00 4.55
46 47 7.857734 TGATTTGTGCTATTTTCTATCCGAA 57.142 32.000 0.00 0.00 0.00 4.30
47 48 7.693952 TGATTTGTGCTATTTTCTATCCGAAC 58.306 34.615 0.00 0.00 0.00 3.95
48 49 7.552687 TGATTTGTGCTATTTTCTATCCGAACT 59.447 33.333 0.00 0.00 0.00 3.01
49 50 7.681939 TTTGTGCTATTTTCTATCCGAACTT 57.318 32.000 0.00 0.00 0.00 2.66
50 51 7.681939 TTGTGCTATTTTCTATCCGAACTTT 57.318 32.000 0.00 0.00 0.00 2.66
51 52 7.072177 TGTGCTATTTTCTATCCGAACTTTG 57.928 36.000 0.00 0.00 0.00 2.77
52 53 6.876789 TGTGCTATTTTCTATCCGAACTTTGA 59.123 34.615 0.00 0.00 0.00 2.69
53 54 7.552687 TGTGCTATTTTCTATCCGAACTTTGAT 59.447 33.333 0.00 0.00 0.00 2.57
54 55 7.852945 GTGCTATTTTCTATCCGAACTTTGATG 59.147 37.037 0.00 0.00 0.00 3.07
55 56 7.768582 TGCTATTTTCTATCCGAACTTTGATGA 59.231 33.333 0.00 0.00 0.00 2.92
56 57 8.612619 GCTATTTTCTATCCGAACTTTGATGAA 58.387 33.333 0.00 0.00 0.00 2.57
61 62 8.520835 TTCTATCCGAACTTTGATGAATATCG 57.479 34.615 0.00 0.00 36.04 2.92
62 63 7.090808 TCTATCCGAACTTTGATGAATATCGG 58.909 38.462 5.01 5.01 42.32 4.18
63 64 3.807622 TCCGAACTTTGATGAATATCGGC 59.192 43.478 6.44 0.00 41.48 5.54
64 65 3.058914 CCGAACTTTGATGAATATCGGCC 60.059 47.826 0.00 0.00 38.05 6.13
65 66 3.362986 CGAACTTTGATGAATATCGGCCG 60.363 47.826 22.12 22.12 36.04 6.13
66 67 2.494059 ACTTTGATGAATATCGGCCGG 58.506 47.619 27.83 6.80 36.04 6.13
67 68 2.158813 ACTTTGATGAATATCGGCCGGT 60.159 45.455 27.83 23.47 36.04 5.28
68 69 2.631160 TTGATGAATATCGGCCGGTT 57.369 45.000 27.83 17.85 36.04 4.44
69 70 2.631160 TGATGAATATCGGCCGGTTT 57.369 45.000 27.83 11.33 36.04 3.27
70 71 2.217750 TGATGAATATCGGCCGGTTTG 58.782 47.619 27.83 0.00 36.04 2.93
71 72 0.951558 ATGAATATCGGCCGGTTTGC 59.048 50.000 27.83 13.49 0.00 3.68
72 73 0.393132 TGAATATCGGCCGGTTTGCA 60.393 50.000 27.83 16.54 0.00 4.08
73 74 0.951558 GAATATCGGCCGGTTTGCAT 59.048 50.000 27.83 12.94 0.00 3.96
74 75 0.667993 AATATCGGCCGGTTTGCATG 59.332 50.000 27.83 0.00 0.00 4.06
75 76 0.179032 ATATCGGCCGGTTTGCATGA 60.179 50.000 27.83 0.00 0.00 3.07
76 77 0.393132 TATCGGCCGGTTTGCATGAA 60.393 50.000 27.83 0.77 0.00 2.57
77 78 1.037030 ATCGGCCGGTTTGCATGAAT 61.037 50.000 27.83 3.72 0.00 2.57
78 79 1.215117 CGGCCGGTTTGCATGAATT 59.785 52.632 20.10 0.00 0.00 2.17
79 80 0.389687 CGGCCGGTTTGCATGAATTT 60.390 50.000 20.10 0.00 0.00 1.82
80 81 1.807139 GGCCGGTTTGCATGAATTTT 58.193 45.000 1.90 0.00 0.00 1.82
81 82 1.464219 GGCCGGTTTGCATGAATTTTG 59.536 47.619 1.90 0.00 0.00 2.44
82 83 2.142319 GCCGGTTTGCATGAATTTTGT 58.858 42.857 1.90 0.00 0.00 2.83
83 84 2.157474 GCCGGTTTGCATGAATTTTGTC 59.843 45.455 1.90 0.00 0.00 3.18
84 85 2.736192 CCGGTTTGCATGAATTTTGTCC 59.264 45.455 0.00 0.00 0.00 4.02
85 86 3.388308 CGGTTTGCATGAATTTTGTCCA 58.612 40.909 0.00 0.00 0.00 4.02
86 87 3.429543 CGGTTTGCATGAATTTTGTCCAG 59.570 43.478 0.00 0.00 0.00 3.86
87 88 4.379652 GGTTTGCATGAATTTTGTCCAGT 58.620 39.130 0.00 0.00 0.00 4.00
88 89 4.815846 GGTTTGCATGAATTTTGTCCAGTT 59.184 37.500 0.00 0.00 0.00 3.16
89 90 5.988561 GGTTTGCATGAATTTTGTCCAGTTA 59.011 36.000 0.00 0.00 0.00 2.24
90 91 6.146021 GGTTTGCATGAATTTTGTCCAGTTAG 59.854 38.462 0.00 0.00 0.00 2.34
91 92 6.403866 TTGCATGAATTTTGTCCAGTTAGT 57.596 33.333 0.00 0.00 0.00 2.24
92 93 6.403866 TGCATGAATTTTGTCCAGTTAGTT 57.596 33.333 0.00 0.00 0.00 2.24
93 94 6.815089 TGCATGAATTTTGTCCAGTTAGTTT 58.185 32.000 0.00 0.00 0.00 2.66
94 95 6.700960 TGCATGAATTTTGTCCAGTTAGTTTG 59.299 34.615 0.00 0.00 0.00 2.93
95 96 6.701400 GCATGAATTTTGTCCAGTTAGTTTGT 59.299 34.615 0.00 0.00 0.00 2.83
96 97 7.306749 GCATGAATTTTGTCCAGTTAGTTTGTG 60.307 37.037 0.00 0.00 0.00 3.33
97 98 6.568869 TGAATTTTGTCCAGTTAGTTTGTGG 58.431 36.000 0.00 0.00 0.00 4.17
98 99 6.153680 TGAATTTTGTCCAGTTAGTTTGTGGT 59.846 34.615 0.00 0.00 32.73 4.16
99 100 5.986501 TTTTGTCCAGTTAGTTTGTGGTT 57.013 34.783 0.00 0.00 32.73 3.67
100 101 4.974368 TTGTCCAGTTAGTTTGTGGTTG 57.026 40.909 0.00 0.00 32.73 3.77
101 102 4.223556 TGTCCAGTTAGTTTGTGGTTGA 57.776 40.909 0.00 0.00 32.73 3.18
102 103 4.590918 TGTCCAGTTAGTTTGTGGTTGAA 58.409 39.130 0.00 0.00 32.73 2.69
103 104 5.010933 TGTCCAGTTAGTTTGTGGTTGAAA 58.989 37.500 0.00 0.00 32.73 2.69
104 105 5.654650 TGTCCAGTTAGTTTGTGGTTGAAAT 59.345 36.000 0.00 0.00 32.73 2.17
105 106 5.977129 GTCCAGTTAGTTTGTGGTTGAAATG 59.023 40.000 0.00 0.00 32.73 2.32
106 107 5.654650 TCCAGTTAGTTTGTGGTTGAAATGT 59.345 36.000 0.00 0.00 32.73 2.71
107 108 6.829298 TCCAGTTAGTTTGTGGTTGAAATGTA 59.171 34.615 0.00 0.00 32.73 2.29
108 109 7.504238 TCCAGTTAGTTTGTGGTTGAAATGTAT 59.496 33.333 0.00 0.00 32.73 2.29
109 110 7.594758 CCAGTTAGTTTGTGGTTGAAATGTATG 59.405 37.037 0.00 0.00 0.00 2.39
110 111 7.114811 CAGTTAGTTTGTGGTTGAAATGTATGC 59.885 37.037 0.00 0.00 0.00 3.14
111 112 4.545610 AGTTTGTGGTTGAAATGTATGCG 58.454 39.130 0.00 0.00 0.00 4.73
112 113 3.567576 TTGTGGTTGAAATGTATGCGG 57.432 42.857 0.00 0.00 0.00 5.69
113 114 2.784347 TGTGGTTGAAATGTATGCGGA 58.216 42.857 0.00 0.00 0.00 5.54
114 115 2.486203 TGTGGTTGAAATGTATGCGGAC 59.514 45.455 0.00 0.00 0.00 4.79
115 116 2.486203 GTGGTTGAAATGTATGCGGACA 59.514 45.455 0.00 0.00 0.00 4.02
116 117 3.057876 GTGGTTGAAATGTATGCGGACAA 60.058 43.478 0.00 0.00 31.83 3.18
117 118 3.057876 TGGTTGAAATGTATGCGGACAAC 60.058 43.478 0.00 0.00 36.47 3.32
119 120 2.418692 TGAAATGTATGCGGACAACGT 58.581 42.857 0.00 0.00 46.52 3.99
120 121 2.809119 TGAAATGTATGCGGACAACGTT 59.191 40.909 0.00 0.00 46.52 3.99
121 122 2.892373 AATGTATGCGGACAACGTTG 57.108 45.000 26.20 26.20 46.52 4.10
122 123 1.083489 ATGTATGCGGACAACGTTGG 58.917 50.000 30.34 15.05 46.52 3.77
123 124 0.033642 TGTATGCGGACAACGTTGGA 59.966 50.000 30.34 6.63 46.52 3.53
124 125 0.441145 GTATGCGGACAACGTTGGAC 59.559 55.000 30.34 22.39 46.52 4.02
134 135 3.047877 CGTTGGACGGCAACCTCC 61.048 66.667 0.00 0.00 38.08 4.30
143 144 4.778143 GCAACCTCCGGCATCCGT 62.778 66.667 0.00 0.00 46.80 4.69
144 145 2.819595 CAACCTCCGGCATCCGTG 60.820 66.667 0.00 0.00 46.80 4.94
145 146 3.319198 AACCTCCGGCATCCGTGT 61.319 61.111 0.00 0.00 46.80 4.49
146 147 3.310860 AACCTCCGGCATCCGTGTC 62.311 63.158 0.00 0.00 46.80 3.67
147 148 4.530857 CCTCCGGCATCCGTGTCC 62.531 72.222 0.00 0.00 46.80 4.02
148 149 4.873129 CTCCGGCATCCGTGTCCG 62.873 72.222 0.00 0.00 46.80 4.79
152 153 4.077184 GGCATCCGTGTCCGTGGA 62.077 66.667 0.00 0.00 38.95 4.02
153 154 2.186903 GCATCCGTGTCCGTGGAT 59.813 61.111 0.00 0.00 45.84 3.41
154 155 1.449601 GCATCCGTGTCCGTGGATT 60.450 57.895 0.00 0.00 42.31 3.01
155 156 1.705337 GCATCCGTGTCCGTGGATTG 61.705 60.000 0.00 0.00 42.31 2.67
156 157 1.089481 CATCCGTGTCCGTGGATTGG 61.089 60.000 0.00 0.00 42.31 3.16
157 158 1.550130 ATCCGTGTCCGTGGATTGGT 61.550 55.000 0.00 0.00 42.31 3.67
158 159 1.740296 CCGTGTCCGTGGATTGGTC 60.740 63.158 0.00 0.00 0.00 4.02
159 160 1.740296 CGTGTCCGTGGATTGGTCC 60.740 63.158 0.00 0.00 45.31 4.46
170 171 2.932261 GGATTGGTCCACCTATTCCAC 58.068 52.381 0.00 0.00 44.42 4.02
171 172 2.561569 GATTGGTCCACCTATTCCACG 58.438 52.381 0.00 0.00 36.82 4.94
172 173 0.616371 TTGGTCCACCTATTCCACGG 59.384 55.000 0.00 0.00 36.82 4.94
173 174 0.252330 TGGTCCACCTATTCCACGGA 60.252 55.000 0.00 0.00 36.82 4.69
174 175 0.177373 GGTCCACCTATTCCACGGAC 59.823 60.000 0.00 0.00 44.45 4.79
175 176 0.179119 GTCCACCTATTCCACGGACG 60.179 60.000 0.00 0.00 37.04 4.79
176 177 1.143183 CCACCTATTCCACGGACGG 59.857 63.158 0.00 0.00 0.00 4.79
177 178 1.324740 CCACCTATTCCACGGACGGA 61.325 60.000 0.00 0.00 0.00 4.69
178 179 0.750850 CACCTATTCCACGGACGGAT 59.249 55.000 0.00 0.00 34.19 4.18
179 180 0.750850 ACCTATTCCACGGACGGATG 59.249 55.000 0.00 0.00 34.19 3.51
180 181 0.600255 CCTATTCCACGGACGGATGC 60.600 60.000 0.00 0.00 34.19 3.91
181 182 0.600255 CTATTCCACGGACGGATGCC 60.600 60.000 0.00 0.00 34.19 4.40
193 194 1.627879 CGGATGCCGGAACAAATTTG 58.372 50.000 16.67 16.67 44.15 2.32
194 195 1.358877 GGATGCCGGAACAAATTTGC 58.641 50.000 18.12 3.57 0.00 3.68
195 196 0.991344 GATGCCGGAACAAATTTGCG 59.009 50.000 18.12 13.00 0.00 4.85
196 197 0.316841 ATGCCGGAACAAATTTGCGT 59.683 45.000 18.12 6.38 0.00 5.24
197 198 0.596083 TGCCGGAACAAATTTGCGTG 60.596 50.000 18.12 8.81 0.00 5.34
198 199 0.596341 GCCGGAACAAATTTGCGTGT 60.596 50.000 18.12 1.15 0.00 4.49
199 200 1.404477 CCGGAACAAATTTGCGTGTC 58.596 50.000 18.12 10.02 0.00 3.67
200 201 1.268794 CCGGAACAAATTTGCGTGTCA 60.269 47.619 18.12 0.00 0.00 3.58
201 202 2.043411 CGGAACAAATTTGCGTGTCAG 58.957 47.619 18.12 7.60 0.00 3.51
202 203 1.786579 GGAACAAATTTGCGTGTCAGC 59.213 47.619 18.12 0.00 37.71 4.26
203 204 1.447938 GAACAAATTTGCGTGTCAGCG 59.552 47.619 18.12 0.00 40.67 5.18
204 205 0.660488 ACAAATTTGCGTGTCAGCGA 59.340 45.000 18.12 0.00 40.67 4.93
205 206 1.266718 ACAAATTTGCGTGTCAGCGAT 59.733 42.857 18.12 0.00 40.67 4.58
206 207 1.645265 CAAATTTGCGTGTCAGCGATG 59.355 47.619 5.01 0.00 40.67 3.84
207 208 0.874390 AATTTGCGTGTCAGCGATGT 59.126 45.000 0.00 0.00 40.67 3.06
208 209 1.720805 ATTTGCGTGTCAGCGATGTA 58.279 45.000 0.00 0.00 40.67 2.29
209 210 1.067693 TTTGCGTGTCAGCGATGTAG 58.932 50.000 0.00 0.00 40.67 2.74
210 211 0.242555 TTGCGTGTCAGCGATGTAGA 59.757 50.000 0.00 0.00 40.67 2.59
211 212 0.455815 TGCGTGTCAGCGATGTAGAT 59.544 50.000 0.00 0.00 40.67 1.98
212 213 0.848942 GCGTGTCAGCGATGTAGATG 59.151 55.000 0.00 0.00 0.00 2.90
213 214 0.848942 CGTGTCAGCGATGTAGATGC 59.151 55.000 0.00 0.00 0.00 3.91
214 215 1.212616 GTGTCAGCGATGTAGATGCC 58.787 55.000 0.00 0.00 0.00 4.40
215 216 0.104855 TGTCAGCGATGTAGATGCCC 59.895 55.000 0.00 0.00 0.00 5.36
222 223 4.081972 CAGCGATGTAGATGCCCTAATACT 60.082 45.833 0.00 0.00 0.00 2.12
228 229 7.870954 CGATGTAGATGCCCTAATACTGTAAAA 59.129 37.037 0.00 0.00 0.00 1.52
232 233 7.208064 AGATGCCCTAATACTGTAAAAGGAA 57.792 36.000 16.34 7.89 0.00 3.36
237 238 5.398695 CCCTAATACTGTAAAAGGAAGGGGG 60.399 48.000 16.34 0.00 37.98 5.40
238 239 5.193124 CCTAATACTGTAAAAGGAAGGGGGT 59.807 44.000 11.47 0.00 0.00 4.95
239 240 2.971901 ACTGTAAAAGGAAGGGGGTG 57.028 50.000 0.00 0.00 0.00 4.61
240 241 2.141067 ACTGTAAAAGGAAGGGGGTGT 58.859 47.619 0.00 0.00 0.00 4.16
241 242 2.158519 ACTGTAAAAGGAAGGGGGTGTG 60.159 50.000 0.00 0.00 0.00 3.82
243 244 2.514582 TGTAAAAGGAAGGGGGTGTGAA 59.485 45.455 0.00 0.00 0.00 3.18
244 245 2.082140 AAAAGGAAGGGGGTGTGAAC 57.918 50.000 0.00 0.00 0.00 3.18
256 260 4.142038 GGGGTGTGAACAAGTGAGTTAAT 58.858 43.478 0.00 0.00 0.00 1.40
258 262 5.507315 GGGGTGTGAACAAGTGAGTTAATTG 60.507 44.000 0.00 0.00 40.08 2.32
261 265 6.857964 GGTGTGAACAAGTGAGTTAATTGATG 59.142 38.462 1.81 0.00 37.76 3.07
267 271 6.248433 ACAAGTGAGTTAATTGATGGGTCAT 58.752 36.000 1.81 0.00 37.76 3.06
287 291 2.612000 TGGAAAAGGGTCGAAGGTCTA 58.388 47.619 0.00 0.00 0.00 2.59
291 295 4.634883 GGAAAAGGGTCGAAGGTCTATTTC 59.365 45.833 0.00 0.00 0.00 2.17
319 323 5.877012 GTCTGACCAAATGCTCTGAAGATAA 59.123 40.000 0.00 0.00 0.00 1.75
351 355 5.955959 ACTAGACATACAGGTGTACCATTCA 59.044 40.000 3.56 0.00 38.89 2.57
353 357 6.121776 AGACATACAGGTGTACCATTCAAA 57.878 37.500 3.56 0.00 38.89 2.69
354 358 5.938125 AGACATACAGGTGTACCATTCAAAC 59.062 40.000 3.56 0.00 38.89 2.93
356 360 2.871453 ACAGGTGTACCATTCAAACCC 58.129 47.619 3.56 0.00 38.89 4.11
357 361 2.445525 ACAGGTGTACCATTCAAACCCT 59.554 45.455 3.56 0.00 38.89 4.34
358 362 2.819608 CAGGTGTACCATTCAAACCCTG 59.180 50.000 3.56 0.00 38.89 4.45
359 363 2.714250 AGGTGTACCATTCAAACCCTGA 59.286 45.455 3.56 0.00 38.89 3.86
360 364 9.336925 ATACAGGTGTACCATTCAAACCCTGAA 62.337 40.741 9.19 0.00 40.49 3.02
433 438 9.450807 CACTCAACTCTTTACCAAATGTTTTAG 57.549 33.333 0.00 0.00 0.00 1.85
438 443 9.594478 AACTCTTTACCAAATGTTTTAGGTTTG 57.406 29.630 0.00 0.00 35.62 2.93
439 444 7.709182 ACTCTTTACCAAATGTTTTAGGTTTGC 59.291 33.333 0.00 0.00 35.62 3.68
454 459 4.441792 AGGTTTGCTTGGCTTTGTAAAAG 58.558 39.130 0.00 0.00 0.00 2.27
515 521 8.524487 TGTTCTTTAACCAGTTAACAAATGTGT 58.476 29.630 8.61 0.00 35.48 3.72
547 557 6.349280 GCACAGCTTAACAAACCTTATCATGA 60.349 38.462 0.00 0.00 0.00 3.07
550 560 6.094603 CAGCTTAACAAACCTTATCATGAGCT 59.905 38.462 0.09 0.00 36.14 4.09
562 572 1.001641 ATGAGCTTGCAGTCCACCC 60.002 57.895 0.00 0.00 0.00 4.61
566 576 2.839098 CTTGCAGTCCACCCACCT 59.161 61.111 0.00 0.00 0.00 4.00
567 577 1.601759 CTTGCAGTCCACCCACCTG 60.602 63.158 0.00 0.00 0.00 4.00
581 593 0.600057 CACCTGCTTTTTCTCTGGGC 59.400 55.000 0.00 0.00 0.00 5.36
599 611 3.134985 TGGGCTGTGACACTTGTAGTTTA 59.865 43.478 7.20 0.00 0.00 2.01
630 642 1.791103 GCGTGGCCTTGTTGTGCTAA 61.791 55.000 3.32 0.00 0.00 3.09
810 823 1.594518 CGTTGCACACTTGTACTGCAC 60.595 52.381 6.25 2.57 35.07 4.57
812 825 1.298602 TGCACACTTGTACTGCACTG 58.701 50.000 2.83 0.00 0.00 3.66
813 826 0.040958 GCACACTTGTACTGCACTGC 60.041 55.000 0.00 0.00 0.00 4.40
814 827 1.298602 CACACTTGTACTGCACTGCA 58.701 50.000 3.11 3.11 36.92 4.41
815 828 1.003545 CACACTTGTACTGCACTGCAC 60.004 52.381 0.00 0.00 33.79 4.57
842 855 3.277133 CCATTTGGCCCGTGTCTG 58.723 61.111 0.00 0.00 0.00 3.51
843 856 1.303236 CCATTTGGCCCGTGTCTGA 60.303 57.895 0.00 0.00 0.00 3.27
844 857 0.893270 CCATTTGGCCCGTGTCTGAA 60.893 55.000 0.00 0.00 0.00 3.02
845 858 0.240945 CATTTGGCCCGTGTCTGAAC 59.759 55.000 0.00 0.00 0.00 3.18
846 859 0.110486 ATTTGGCCCGTGTCTGAACT 59.890 50.000 0.00 0.00 0.00 3.01
887 907 7.007697 CGAAATTCGAAAGCCTATAAATACCG 58.992 38.462 10.18 0.00 43.74 4.02
921 941 1.340889 CAAACACCCACACCATCCAAG 59.659 52.381 0.00 0.00 0.00 3.61
922 942 0.555769 AACACCCACACCATCCAAGT 59.444 50.000 0.00 0.00 0.00 3.16
938 958 2.886523 CCAAGTCCATCTTTGCACAAGA 59.113 45.455 11.88 11.88 33.63 3.02
1227 1247 1.282157 GACCCCAACCTGAAGCAGTAT 59.718 52.381 0.00 0.00 0.00 2.12
1292 1312 0.381801 CCCGTGCCATCATGCTAAAC 59.618 55.000 0.00 0.00 0.00 2.01
1293 1313 1.382522 CCGTGCCATCATGCTAAACT 58.617 50.000 0.00 0.00 0.00 2.66
1298 1318 1.268234 GCCATCATGCTAAACTGACGC 60.268 52.381 0.00 0.00 0.00 5.19
1299 1319 2.009051 CCATCATGCTAAACTGACGCA 58.991 47.619 0.00 0.00 38.14 5.24
1308 1333 6.951256 TGCTAAACTGACGCATATATGATC 57.049 37.500 17.10 12.64 0.00 2.92
1331 1356 4.527583 CGAGAGAGCCCAGCCAGC 62.528 72.222 0.00 0.00 0.00 4.85
1332 1357 3.397439 GAGAGAGCCCAGCCAGCA 61.397 66.667 0.00 0.00 0.00 4.41
1333 1358 2.932194 AGAGAGCCCAGCCAGCAA 60.932 61.111 0.00 0.00 0.00 3.91
1337 1370 3.255397 AGCCCAGCCAGCAACTCT 61.255 61.111 0.00 0.00 0.00 3.24
1339 1372 2.752358 CCCAGCCAGCAACTCTCA 59.248 61.111 0.00 0.00 0.00 3.27
1361 1399 0.518636 ACGCTGCATGTGTTGATGTC 59.481 50.000 0.00 0.00 35.62 3.06
1362 1400 0.179181 CGCTGCATGTGTTGATGTCC 60.179 55.000 0.00 0.00 0.00 4.02
1363 1401 0.883153 GCTGCATGTGTTGATGTCCA 59.117 50.000 0.00 0.00 0.00 4.02
1371 1409 4.630894 TGTGTTGATGTCCAAGTGTTTC 57.369 40.909 0.00 0.00 35.03 2.78
1465 1515 2.857483 TGTTTGATGTTCGGATGGTGT 58.143 42.857 0.00 0.00 0.00 4.16
1475 1525 1.140052 TCGGATGGTGTTTGTGTGAGT 59.860 47.619 0.00 0.00 0.00 3.41
1483 1533 3.942748 GGTGTTTGTGTGAGTTCCACTAA 59.057 43.478 0.00 0.00 45.86 2.24
1485 1535 4.035208 GTGTTTGTGTGAGTTCCACTAAGG 59.965 45.833 0.00 0.00 45.86 2.69
1486 1536 4.196971 GTTTGTGTGAGTTCCACTAAGGT 58.803 43.478 0.00 0.00 45.86 3.50
1487 1537 5.104859 TGTTTGTGTGAGTTCCACTAAGGTA 60.105 40.000 0.00 0.00 45.86 3.08
1488 1538 5.617528 TTGTGTGAGTTCCACTAAGGTAA 57.382 39.130 0.00 0.00 45.86 2.85
1489 1539 5.209818 TGTGTGAGTTCCACTAAGGTAAG 57.790 43.478 0.00 0.00 45.86 2.34
1490 1540 4.039973 TGTGTGAGTTCCACTAAGGTAAGG 59.960 45.833 0.00 0.00 45.86 2.69
1493 1543 4.081586 GTGAGTTCCACTAAGGTAAGGAGG 60.082 50.000 0.00 0.00 42.44 4.30
1587 1637 4.551990 CGAACGGGCATGTGACATATAAAC 60.552 45.833 0.00 0.00 0.00 2.01
1589 1639 4.127171 ACGGGCATGTGACATATAAACTC 58.873 43.478 0.00 0.00 0.00 3.01
1590 1640 3.184379 CGGGCATGTGACATATAAACTCG 59.816 47.826 0.00 0.00 0.00 4.18
1592 1642 4.024893 GGGCATGTGACATATAAACTCGTG 60.025 45.833 0.00 0.00 0.00 4.35
1634 1685 1.414181 CCCGTCCTCTGCATCATTACT 59.586 52.381 0.00 0.00 0.00 2.24
1779 1830 5.010516 CCACCATCAAAACTGGTTGAATGTA 59.989 40.000 0.00 0.00 44.67 2.29
1783 1834 6.808212 CCATCAAAACTGGTTGAATGTATCAC 59.192 38.462 0.98 0.00 40.76 3.06
1786 1837 5.356882 AAACTGGTTGAATGTATCACGTG 57.643 39.130 9.94 9.94 37.92 4.49
1801 1852 3.937814 TCACGTGCTACCATCTTTCATT 58.062 40.909 11.67 0.00 0.00 2.57
1812 1863 3.441163 CATCTTTCATTGATTGCACCCG 58.559 45.455 0.00 0.00 0.00 5.28
1813 1864 2.513753 TCTTTCATTGATTGCACCCGT 58.486 42.857 0.00 0.00 0.00 5.28
1814 1865 3.680490 TCTTTCATTGATTGCACCCGTA 58.320 40.909 0.00 0.00 0.00 4.02
1815 1866 4.075682 TCTTTCATTGATTGCACCCGTAA 58.924 39.130 0.00 0.00 0.00 3.18
1816 1867 4.520874 TCTTTCATTGATTGCACCCGTAAA 59.479 37.500 0.00 0.00 0.00 2.01
1817 1868 4.855715 TTCATTGATTGCACCCGTAAAA 57.144 36.364 0.00 0.00 0.00 1.52
1818 1869 4.855715 TCATTGATTGCACCCGTAAAAA 57.144 36.364 0.00 0.00 0.00 1.94
1864 1915 3.317608 CGCTTTCGCATGCTGAATT 57.682 47.368 17.13 0.00 35.30 2.17
1874 1925 3.060272 CGCATGCTGAATTAAGGACTACG 60.060 47.826 17.13 0.00 0.00 3.51
1879 1930 5.647589 TGCTGAATTAAGGACTACGTACAG 58.352 41.667 0.00 0.00 0.00 2.74
1884 1935 6.040166 TGAATTAAGGACTACGTACAGATCCC 59.960 42.308 0.00 0.00 0.00 3.85
1887 1938 1.872313 GGACTACGTACAGATCCCTCG 59.128 57.143 0.00 0.00 0.00 4.63
1893 1944 2.014857 CGTACAGATCCCTCGTGAAGA 58.985 52.381 0.00 0.00 0.00 2.87
1895 1946 3.813724 CGTACAGATCCCTCGTGAAGATA 59.186 47.826 0.00 0.00 0.00 1.98
1909 1960 4.393062 CGTGAAGATATGAAAGCAACCTGT 59.607 41.667 0.00 0.00 0.00 4.00
1912 1963 7.201644 CGTGAAGATATGAAAGCAACCTGTAAT 60.202 37.037 0.00 0.00 0.00 1.89
1913 1964 8.462016 GTGAAGATATGAAAGCAACCTGTAATT 58.538 33.333 0.00 0.00 0.00 1.40
1914 1965 8.677300 TGAAGATATGAAAGCAACCTGTAATTC 58.323 33.333 0.00 0.00 0.00 2.17
1918 1969 9.860898 GATATGAAAGCAACCTGTAATTCTTTT 57.139 29.630 0.00 0.00 0.00 2.27
1920 1971 7.769272 TGAAAGCAACCTGTAATTCTTTTTG 57.231 32.000 0.00 0.00 0.00 2.44
1994 2051 9.319143 GTAAAGCACAAACTATCACTGAGATAT 57.681 33.333 0.00 0.00 38.50 1.63
1995 2052 8.430801 AAAGCACAAACTATCACTGAGATATC 57.569 34.615 0.00 0.00 38.50 1.63
1996 2053 6.212235 AGCACAAACTATCACTGAGATATCG 58.788 40.000 0.00 0.00 38.50 2.92
1997 2054 6.039829 AGCACAAACTATCACTGAGATATCGA 59.960 38.462 0.00 0.00 38.50 3.59
2030 2088 4.044191 AGGATTAACCCAACCAAACTAGCT 59.956 41.667 0.00 0.00 40.05 3.32
2035 2093 1.686052 CCCAACCAAACTAGCTTGCAA 59.314 47.619 0.00 0.00 0.00 4.08
2037 2095 3.244181 CCCAACCAAACTAGCTTGCAAAT 60.244 43.478 0.00 0.00 0.00 2.32
2041 2099 6.215845 CAACCAAACTAGCTTGCAAATAAGT 58.784 36.000 0.00 0.84 0.00 2.24
2043 2101 6.816136 ACCAAACTAGCTTGCAAATAAGTTT 58.184 32.000 19.31 19.31 34.39 2.66
2057 2115 8.385111 TGCAAATAAGTTTGTTATACTAGTCGC 58.615 33.333 0.00 0.00 45.14 5.19
2061 2119 5.909621 AGTTTGTTATACTAGTCGCTGGA 57.090 39.130 0.00 0.00 0.00 3.86
2070 2128 0.108186 TAGTCGCTGGAGGCATGTTG 60.108 55.000 0.00 0.00 41.91 3.33
2071 2129 1.375908 GTCGCTGGAGGCATGTTGA 60.376 57.895 0.00 0.00 41.91 3.18
2072 2130 0.955428 GTCGCTGGAGGCATGTTGAA 60.955 55.000 0.00 0.00 41.91 2.69
2073 2131 0.035152 TCGCTGGAGGCATGTTGAAT 60.035 50.000 0.00 0.00 41.91 2.57
2074 2132 0.099968 CGCTGGAGGCATGTTGAATG 59.900 55.000 0.00 0.00 41.91 2.67
2075 2133 0.179119 GCTGGAGGCATGTTGAATGC 60.179 55.000 1.65 1.65 43.85 3.56
2076 2134 1.471119 CTGGAGGCATGTTGAATGCT 58.529 50.000 9.92 0.00 44.02 3.79
2077 2135 2.646930 CTGGAGGCATGTTGAATGCTA 58.353 47.619 9.92 0.00 44.02 3.49
2078 2136 2.357009 CTGGAGGCATGTTGAATGCTAC 59.643 50.000 9.92 4.95 44.02 3.58
2099 2157 3.058016 ACATGAATCGCACACCAAAGAAG 60.058 43.478 0.00 0.00 0.00 2.85
2107 2165 4.929807 ACCAAAGAAGGGTGGCAG 57.070 55.556 0.00 0.00 38.58 4.85
2119 2177 1.555075 GGGTGGCAGACATGTAAGAGA 59.445 52.381 0.00 0.00 0.00 3.10
2120 2178 2.171448 GGGTGGCAGACATGTAAGAGAT 59.829 50.000 0.00 0.00 0.00 2.75
2121 2179 3.388024 GGGTGGCAGACATGTAAGAGATA 59.612 47.826 0.00 0.00 0.00 1.98
2122 2180 4.141711 GGGTGGCAGACATGTAAGAGATAA 60.142 45.833 0.00 0.00 0.00 1.75
2123 2181 5.428253 GGTGGCAGACATGTAAGAGATAAA 58.572 41.667 0.00 0.00 0.00 1.40
2124 2182 5.880332 GGTGGCAGACATGTAAGAGATAAAA 59.120 40.000 0.00 0.00 0.00 1.52
2125 2183 6.037610 GGTGGCAGACATGTAAGAGATAAAAG 59.962 42.308 0.00 0.00 0.00 2.27
2127 2185 6.818644 TGGCAGACATGTAAGAGATAAAAGAC 59.181 38.462 0.00 0.00 0.00 3.01
2128 2186 6.818644 GGCAGACATGTAAGAGATAAAAGACA 59.181 38.462 0.00 0.00 0.00 3.41
2129 2187 7.010923 GGCAGACATGTAAGAGATAAAAGACAG 59.989 40.741 0.00 0.00 0.00 3.51
2130 2188 7.547370 GCAGACATGTAAGAGATAAAAGACAGT 59.453 37.037 0.00 0.00 0.00 3.55
2131 2189 8.867935 CAGACATGTAAGAGATAAAAGACAGTG 58.132 37.037 0.00 0.00 0.00 3.66
2153 4012 5.003160 TGATTCGTTTCATCTTGGTCACAT 58.997 37.500 0.00 0.00 0.00 3.21
2162 4021 6.312399 TCATCTTGGTCACATAAACAACAC 57.688 37.500 0.00 0.00 0.00 3.32
2199 4058 2.543430 CACCTCCGTTTTTGCCAAATTG 59.457 45.455 0.00 0.00 0.00 2.32
2200 4059 2.169561 ACCTCCGTTTTTGCCAAATTGT 59.830 40.909 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.153721 CAAATCAACCAAACATAGCATACAAAT 57.846 29.630 0.00 0.00 0.00 2.32
3 4 8.147058 ACAAATCAACCAAACATAGCATACAAA 58.853 29.630 0.00 0.00 0.00 2.83
4 5 7.598118 CACAAATCAACCAAACATAGCATACAA 59.402 33.333 0.00 0.00 0.00 2.41
5 6 7.089538 CACAAATCAACCAAACATAGCATACA 58.910 34.615 0.00 0.00 0.00 2.29
6 7 6.034898 GCACAAATCAACCAAACATAGCATAC 59.965 38.462 0.00 0.00 0.00 2.39
7 8 6.071447 AGCACAAATCAACCAAACATAGCATA 60.071 34.615 0.00 0.00 0.00 3.14
8 9 4.931002 GCACAAATCAACCAAACATAGCAT 59.069 37.500 0.00 0.00 0.00 3.79
9 10 4.039004 AGCACAAATCAACCAAACATAGCA 59.961 37.500 0.00 0.00 0.00 3.49
10 11 4.559153 AGCACAAATCAACCAAACATAGC 58.441 39.130 0.00 0.00 0.00 2.97
11 12 8.761575 AAATAGCACAAATCAACCAAACATAG 57.238 30.769 0.00 0.00 0.00 2.23
12 13 9.202273 GAAAATAGCACAAATCAACCAAACATA 57.798 29.630 0.00 0.00 0.00 2.29
13 14 7.933033 AGAAAATAGCACAAATCAACCAAACAT 59.067 29.630 0.00 0.00 0.00 2.71
14 15 7.271511 AGAAAATAGCACAAATCAACCAAACA 58.728 30.769 0.00 0.00 0.00 2.83
15 16 7.713764 AGAAAATAGCACAAATCAACCAAAC 57.286 32.000 0.00 0.00 0.00 2.93
16 17 9.638239 GATAGAAAATAGCACAAATCAACCAAA 57.362 29.630 0.00 0.00 0.00 3.28
17 18 8.250332 GGATAGAAAATAGCACAAATCAACCAA 58.750 33.333 0.00 0.00 0.00 3.67
18 19 7.415095 CGGATAGAAAATAGCACAAATCAACCA 60.415 37.037 0.00 0.00 0.00 3.67
19 20 6.912591 CGGATAGAAAATAGCACAAATCAACC 59.087 38.462 0.00 0.00 0.00 3.77
20 21 7.693952 TCGGATAGAAAATAGCACAAATCAAC 58.306 34.615 0.00 0.00 0.00 3.18
21 22 7.857734 TCGGATAGAAAATAGCACAAATCAA 57.142 32.000 0.00 0.00 0.00 2.57
22 23 7.552687 AGTTCGGATAGAAAATAGCACAAATCA 59.447 33.333 0.00 0.00 41.10 2.57
23 24 7.920738 AGTTCGGATAGAAAATAGCACAAATC 58.079 34.615 0.00 0.00 41.10 2.17
24 25 7.865706 AGTTCGGATAGAAAATAGCACAAAT 57.134 32.000 0.00 0.00 41.10 2.32
25 26 7.681939 AAGTTCGGATAGAAAATAGCACAAA 57.318 32.000 0.00 0.00 41.10 2.83
26 27 7.389330 TCAAAGTTCGGATAGAAAATAGCACAA 59.611 33.333 0.00 0.00 41.10 3.33
27 28 6.876789 TCAAAGTTCGGATAGAAAATAGCACA 59.123 34.615 0.00 0.00 41.10 4.57
28 29 7.303634 TCAAAGTTCGGATAGAAAATAGCAC 57.696 36.000 0.00 0.00 41.10 4.40
29 30 7.768582 TCATCAAAGTTCGGATAGAAAATAGCA 59.231 33.333 0.00 0.00 41.10 3.49
30 31 8.142994 TCATCAAAGTTCGGATAGAAAATAGC 57.857 34.615 0.00 0.00 41.10 2.97
35 36 8.978539 CGATATTCATCAAAGTTCGGATAGAAA 58.021 33.333 0.00 0.00 41.10 2.52
36 37 7.598869 CCGATATTCATCAAAGTTCGGATAGAA 59.401 37.037 2.44 0.00 43.16 2.10
37 38 7.090808 CCGATATTCATCAAAGTTCGGATAGA 58.909 38.462 2.44 0.00 43.16 1.98
38 39 6.183360 GCCGATATTCATCAAAGTTCGGATAG 60.183 42.308 12.20 0.00 43.16 2.08
39 40 5.637810 GCCGATATTCATCAAAGTTCGGATA 59.362 40.000 12.20 0.00 43.16 2.59
40 41 4.452455 GCCGATATTCATCAAAGTTCGGAT 59.548 41.667 12.20 0.00 43.16 4.18
41 42 3.807622 GCCGATATTCATCAAAGTTCGGA 59.192 43.478 12.20 0.00 43.16 4.55
42 43 3.058914 GGCCGATATTCATCAAAGTTCGG 60.059 47.826 4.20 4.20 43.27 4.30
43 44 3.362986 CGGCCGATATTCATCAAAGTTCG 60.363 47.826 24.07 0.00 0.00 3.95
44 45 3.058914 CCGGCCGATATTCATCAAAGTTC 60.059 47.826 30.73 0.00 0.00 3.01
45 46 2.878406 CCGGCCGATATTCATCAAAGTT 59.122 45.455 30.73 0.00 0.00 2.66
46 47 2.158813 ACCGGCCGATATTCATCAAAGT 60.159 45.455 30.73 8.01 0.00 2.66
47 48 2.494059 ACCGGCCGATATTCATCAAAG 58.506 47.619 30.73 7.25 0.00 2.77
48 49 2.631160 ACCGGCCGATATTCATCAAA 57.369 45.000 30.73 0.00 0.00 2.69
49 50 2.616376 CAAACCGGCCGATATTCATCAA 59.384 45.455 30.73 0.00 0.00 2.57
50 51 2.217750 CAAACCGGCCGATATTCATCA 58.782 47.619 30.73 0.00 0.00 3.07
51 52 1.069227 GCAAACCGGCCGATATTCATC 60.069 52.381 30.73 3.67 0.00 2.92
52 53 0.951558 GCAAACCGGCCGATATTCAT 59.048 50.000 30.73 1.80 0.00 2.57
53 54 0.393132 TGCAAACCGGCCGATATTCA 60.393 50.000 30.73 15.82 0.00 2.57
54 55 0.951558 ATGCAAACCGGCCGATATTC 59.048 50.000 30.73 13.17 0.00 1.75
55 56 0.667993 CATGCAAACCGGCCGATATT 59.332 50.000 30.73 15.38 0.00 1.28
56 57 0.179032 TCATGCAAACCGGCCGATAT 60.179 50.000 30.73 9.03 0.00 1.63
57 58 0.393132 TTCATGCAAACCGGCCGATA 60.393 50.000 30.73 6.04 0.00 2.92
58 59 1.037030 ATTCATGCAAACCGGCCGAT 61.037 50.000 30.73 6.36 0.00 4.18
59 60 1.247419 AATTCATGCAAACCGGCCGA 61.247 50.000 30.73 5.29 0.00 5.54
60 61 0.389687 AAATTCATGCAAACCGGCCG 60.390 50.000 21.04 21.04 0.00 6.13
61 62 1.464219 CAAAATTCATGCAAACCGGCC 59.536 47.619 0.00 0.00 0.00 6.13
62 63 2.142319 ACAAAATTCATGCAAACCGGC 58.858 42.857 0.00 0.00 0.00 6.13
63 64 2.736192 GGACAAAATTCATGCAAACCGG 59.264 45.455 0.00 0.00 0.00 5.28
64 65 3.388308 TGGACAAAATTCATGCAAACCG 58.612 40.909 0.00 0.00 0.00 4.44
65 66 4.379652 ACTGGACAAAATTCATGCAAACC 58.620 39.130 0.00 0.00 0.00 3.27
66 67 5.989551 AACTGGACAAAATTCATGCAAAC 57.010 34.783 0.00 0.00 0.00 2.93
67 68 6.815089 ACTAACTGGACAAAATTCATGCAAA 58.185 32.000 0.00 0.00 0.00 3.68
68 69 6.403866 ACTAACTGGACAAAATTCATGCAA 57.596 33.333 0.00 0.00 0.00 4.08
69 70 6.403866 AACTAACTGGACAAAATTCATGCA 57.596 33.333 0.00 0.00 0.00 3.96
70 71 6.701400 ACAAACTAACTGGACAAAATTCATGC 59.299 34.615 0.00 0.00 0.00 4.06
71 72 7.169645 CCACAAACTAACTGGACAAAATTCATG 59.830 37.037 0.00 0.00 0.00 3.07
72 73 7.147742 ACCACAAACTAACTGGACAAAATTCAT 60.148 33.333 0.00 0.00 0.00 2.57
73 74 6.153680 ACCACAAACTAACTGGACAAAATTCA 59.846 34.615 0.00 0.00 0.00 2.57
74 75 6.569780 ACCACAAACTAACTGGACAAAATTC 58.430 36.000 0.00 0.00 0.00 2.17
75 76 6.538945 ACCACAAACTAACTGGACAAAATT 57.461 33.333 0.00 0.00 0.00 1.82
76 77 6.153680 TCAACCACAAACTAACTGGACAAAAT 59.846 34.615 0.00 0.00 0.00 1.82
77 78 5.477291 TCAACCACAAACTAACTGGACAAAA 59.523 36.000 0.00 0.00 0.00 2.44
78 79 5.010933 TCAACCACAAACTAACTGGACAAA 58.989 37.500 0.00 0.00 0.00 2.83
79 80 4.590918 TCAACCACAAACTAACTGGACAA 58.409 39.130 0.00 0.00 0.00 3.18
80 81 4.223556 TCAACCACAAACTAACTGGACA 57.776 40.909 0.00 0.00 0.00 4.02
81 82 5.570234 TTTCAACCACAAACTAACTGGAC 57.430 39.130 0.00 0.00 0.00 4.02
82 83 5.654650 ACATTTCAACCACAAACTAACTGGA 59.345 36.000 0.00 0.00 0.00 3.86
83 84 5.901552 ACATTTCAACCACAAACTAACTGG 58.098 37.500 0.00 0.00 0.00 4.00
84 85 7.114811 GCATACATTTCAACCACAAACTAACTG 59.885 37.037 0.00 0.00 0.00 3.16
85 86 7.145323 GCATACATTTCAACCACAAACTAACT 58.855 34.615 0.00 0.00 0.00 2.24
86 87 6.087555 CGCATACATTTCAACCACAAACTAAC 59.912 38.462 0.00 0.00 0.00 2.34
87 88 6.146216 CGCATACATTTCAACCACAAACTAA 58.854 36.000 0.00 0.00 0.00 2.24
88 89 5.335269 CCGCATACATTTCAACCACAAACTA 60.335 40.000 0.00 0.00 0.00 2.24
89 90 4.545610 CGCATACATTTCAACCACAAACT 58.454 39.130 0.00 0.00 0.00 2.66
90 91 3.672867 CCGCATACATTTCAACCACAAAC 59.327 43.478 0.00 0.00 0.00 2.93
91 92 3.570125 TCCGCATACATTTCAACCACAAA 59.430 39.130 0.00 0.00 0.00 2.83
92 93 3.057876 GTCCGCATACATTTCAACCACAA 60.058 43.478 0.00 0.00 0.00 3.33
93 94 2.486203 GTCCGCATACATTTCAACCACA 59.514 45.455 0.00 0.00 0.00 4.17
94 95 2.486203 TGTCCGCATACATTTCAACCAC 59.514 45.455 0.00 0.00 0.00 4.16
95 96 2.784347 TGTCCGCATACATTTCAACCA 58.216 42.857 0.00 0.00 0.00 3.67
96 97 3.498082 GTTGTCCGCATACATTTCAACC 58.502 45.455 0.00 0.00 0.00 3.77
97 98 3.160545 CGTTGTCCGCATACATTTCAAC 58.839 45.455 0.00 0.00 0.00 3.18
98 99 2.809119 ACGTTGTCCGCATACATTTCAA 59.191 40.909 0.00 0.00 41.42 2.69
99 100 2.418692 ACGTTGTCCGCATACATTTCA 58.581 42.857 0.00 0.00 41.42 2.69
100 101 3.160545 CAACGTTGTCCGCATACATTTC 58.839 45.455 20.21 0.00 41.42 2.17
101 102 2.095466 CCAACGTTGTCCGCATACATTT 60.095 45.455 25.63 0.00 41.42 2.32
102 103 1.466950 CCAACGTTGTCCGCATACATT 59.533 47.619 25.63 0.00 41.42 2.71
103 104 1.083489 CCAACGTTGTCCGCATACAT 58.917 50.000 25.63 0.00 41.42 2.29
104 105 0.033642 TCCAACGTTGTCCGCATACA 59.966 50.000 25.63 0.00 41.42 2.29
105 106 0.441145 GTCCAACGTTGTCCGCATAC 59.559 55.000 25.63 8.98 41.42 2.39
106 107 1.009903 CGTCCAACGTTGTCCGCATA 61.010 55.000 25.63 0.83 41.42 3.14
107 108 2.314647 CGTCCAACGTTGTCCGCAT 61.315 57.895 25.63 0.00 41.42 4.73
108 109 2.962786 CGTCCAACGTTGTCCGCA 60.963 61.111 25.63 2.60 41.42 5.69
109 110 3.708734 CCGTCCAACGTTGTCCGC 61.709 66.667 25.63 11.91 40.58 5.54
110 111 3.708734 GCCGTCCAACGTTGTCCG 61.709 66.667 25.63 23.85 40.58 4.79
111 112 2.181521 TTGCCGTCCAACGTTGTCC 61.182 57.895 25.63 14.66 40.58 4.02
112 113 1.010462 GTTGCCGTCCAACGTTGTC 60.010 57.895 25.63 16.88 43.85 3.18
113 114 3.103875 GTTGCCGTCCAACGTTGT 58.896 55.556 25.63 0.00 43.85 3.32
135 136 2.869503 AATCCACGGACACGGATGCC 62.870 60.000 0.00 0.00 46.48 4.40
136 137 1.449601 AATCCACGGACACGGATGC 60.450 57.895 0.00 0.00 46.48 3.91
137 138 1.089481 CCAATCCACGGACACGGATG 61.089 60.000 0.00 0.00 46.48 3.51
138 139 1.220749 CCAATCCACGGACACGGAT 59.779 57.895 0.00 0.00 46.48 4.18
139 140 2.162338 GACCAATCCACGGACACGGA 62.162 60.000 4.66 0.00 46.48 4.69
140 141 1.740296 GACCAATCCACGGACACGG 60.740 63.158 0.00 0.00 46.48 4.94
141 142 1.740296 GGACCAATCCACGGACACG 60.740 63.158 0.00 0.00 45.47 4.49
142 143 4.296265 GGACCAATCCACGGACAC 57.704 61.111 0.00 0.00 45.47 3.67
150 151 2.745152 CGTGGAATAGGTGGACCAATCC 60.745 54.545 0.00 0.00 46.48 3.01
151 152 2.561569 CGTGGAATAGGTGGACCAATC 58.438 52.381 0.00 0.00 38.89 2.67
152 153 1.211949 CCGTGGAATAGGTGGACCAAT 59.788 52.381 0.00 0.00 38.89 3.16
153 154 0.616371 CCGTGGAATAGGTGGACCAA 59.384 55.000 0.00 0.00 38.89 3.67
154 155 0.252330 TCCGTGGAATAGGTGGACCA 60.252 55.000 0.00 0.00 38.89 4.02
155 156 0.177373 GTCCGTGGAATAGGTGGACC 59.823 60.000 0.00 0.00 42.57 4.46
156 157 0.179119 CGTCCGTGGAATAGGTGGAC 60.179 60.000 0.00 0.00 44.43 4.02
157 158 1.324740 CCGTCCGTGGAATAGGTGGA 61.325 60.000 0.00 0.00 0.00 4.02
158 159 1.143183 CCGTCCGTGGAATAGGTGG 59.857 63.158 0.00 0.00 0.00 4.61
159 160 0.750850 ATCCGTCCGTGGAATAGGTG 59.249 55.000 0.00 0.00 42.46 4.00
160 161 0.750850 CATCCGTCCGTGGAATAGGT 59.249 55.000 0.00 0.00 42.46 3.08
161 162 0.600255 GCATCCGTCCGTGGAATAGG 60.600 60.000 0.00 0.00 42.46 2.57
162 163 0.600255 GGCATCCGTCCGTGGAATAG 60.600 60.000 0.00 0.00 42.46 1.73
163 164 1.444250 GGCATCCGTCCGTGGAATA 59.556 57.895 0.00 0.00 42.46 1.75
164 165 2.189521 GGCATCCGTCCGTGGAAT 59.810 61.111 0.00 0.00 42.46 3.01
165 166 4.444838 CGGCATCCGTCCGTGGAA 62.445 66.667 0.00 0.00 42.46 3.53
168 169 4.444838 TTCCGGCATCCGTCCGTG 62.445 66.667 0.00 0.00 46.80 4.94
169 170 4.446413 GTTCCGGCATCCGTCCGT 62.446 66.667 0.00 0.00 46.80 4.69
170 171 3.943479 TTGTTCCGGCATCCGTCCG 62.943 63.158 0.00 0.00 46.80 4.79
171 172 1.029947 ATTTGTTCCGGCATCCGTCC 61.030 55.000 0.00 0.00 46.80 4.79
172 173 0.808755 AATTTGTTCCGGCATCCGTC 59.191 50.000 0.00 0.00 46.80 4.79
173 174 1.067915 CAAATTTGTTCCGGCATCCGT 60.068 47.619 10.15 0.00 46.80 4.69
175 176 1.358877 GCAAATTTGTTCCGGCATCC 58.641 50.000 19.03 0.00 0.00 3.51
176 177 0.991344 CGCAAATTTGTTCCGGCATC 59.009 50.000 19.03 0.00 0.00 3.91
177 178 0.316841 ACGCAAATTTGTTCCGGCAT 59.683 45.000 19.03 0.00 0.00 4.40
178 179 0.596083 CACGCAAATTTGTTCCGGCA 60.596 50.000 19.03 0.00 0.00 5.69
179 180 0.596341 ACACGCAAATTTGTTCCGGC 60.596 50.000 19.03 3.11 0.00 6.13
180 181 1.268794 TGACACGCAAATTTGTTCCGG 60.269 47.619 19.03 0.00 0.00 5.14
181 182 2.043411 CTGACACGCAAATTTGTTCCG 58.957 47.619 19.03 15.74 0.00 4.30
182 183 1.786579 GCTGACACGCAAATTTGTTCC 59.213 47.619 19.03 2.39 0.00 3.62
183 184 1.447938 CGCTGACACGCAAATTTGTTC 59.552 47.619 19.03 10.99 0.00 3.18
184 185 1.064803 TCGCTGACACGCAAATTTGTT 59.935 42.857 19.03 4.47 0.00 2.83
185 186 0.660488 TCGCTGACACGCAAATTTGT 59.340 45.000 19.03 0.00 0.00 2.83
186 187 1.645265 CATCGCTGACACGCAAATTTG 59.355 47.619 14.03 14.03 0.00 2.32
187 188 1.266718 ACATCGCTGACACGCAAATTT 59.733 42.857 0.00 0.00 0.00 1.82
188 189 0.874390 ACATCGCTGACACGCAAATT 59.126 45.000 0.00 0.00 0.00 1.82
189 190 1.660607 CTACATCGCTGACACGCAAAT 59.339 47.619 0.00 0.00 0.00 2.32
190 191 1.067693 CTACATCGCTGACACGCAAA 58.932 50.000 0.00 0.00 0.00 3.68
191 192 0.242555 TCTACATCGCTGACACGCAA 59.757 50.000 0.00 0.00 0.00 4.85
192 193 0.455815 ATCTACATCGCTGACACGCA 59.544 50.000 0.00 0.00 0.00 5.24
193 194 0.848942 CATCTACATCGCTGACACGC 59.151 55.000 0.00 0.00 0.00 5.34
194 195 0.848942 GCATCTACATCGCTGACACG 59.151 55.000 0.00 0.00 0.00 4.49
195 196 1.212616 GGCATCTACATCGCTGACAC 58.787 55.000 0.00 0.00 0.00 3.67
196 197 0.104855 GGGCATCTACATCGCTGACA 59.895 55.000 0.00 0.00 0.00 3.58
197 198 0.390860 AGGGCATCTACATCGCTGAC 59.609 55.000 0.00 0.00 0.00 3.51
198 199 1.995376 TAGGGCATCTACATCGCTGA 58.005 50.000 0.00 0.00 0.00 4.26
199 200 2.820059 TTAGGGCATCTACATCGCTG 57.180 50.000 0.00 0.00 0.00 5.18
200 201 4.081972 CAGTATTAGGGCATCTACATCGCT 60.082 45.833 0.00 0.00 0.00 4.93
201 202 4.177026 CAGTATTAGGGCATCTACATCGC 58.823 47.826 0.00 0.00 0.00 4.58
202 203 5.392767 ACAGTATTAGGGCATCTACATCG 57.607 43.478 0.00 0.00 0.00 3.84
203 204 9.209175 CTTTTACAGTATTAGGGCATCTACATC 57.791 37.037 0.00 0.00 0.00 3.06
204 205 8.157476 CCTTTTACAGTATTAGGGCATCTACAT 58.843 37.037 0.00 0.00 0.00 2.29
205 206 7.346175 TCCTTTTACAGTATTAGGGCATCTACA 59.654 37.037 8.09 0.00 0.00 2.74
206 207 7.732996 TCCTTTTACAGTATTAGGGCATCTAC 58.267 38.462 8.09 0.00 0.00 2.59
207 208 7.924358 TCCTTTTACAGTATTAGGGCATCTA 57.076 36.000 8.09 0.00 0.00 1.98
208 209 6.824958 TCCTTTTACAGTATTAGGGCATCT 57.175 37.500 8.09 0.00 0.00 2.90
209 210 6.486993 CCTTCCTTTTACAGTATTAGGGCATC 59.513 42.308 8.09 0.00 0.00 3.91
210 211 6.365520 CCTTCCTTTTACAGTATTAGGGCAT 58.634 40.000 8.09 0.00 0.00 4.40
211 212 5.339695 CCCTTCCTTTTACAGTATTAGGGCA 60.340 44.000 0.00 0.00 33.96 5.36
212 213 5.131067 CCCTTCCTTTTACAGTATTAGGGC 58.869 45.833 0.00 0.00 33.96 5.19
213 214 5.398695 CCCCCTTCCTTTTACAGTATTAGGG 60.399 48.000 0.00 0.00 39.59 3.53
214 215 5.193124 ACCCCCTTCCTTTTACAGTATTAGG 59.807 44.000 3.14 3.14 0.00 2.69
215 216 6.120220 CACCCCCTTCCTTTTACAGTATTAG 58.880 44.000 0.00 0.00 0.00 1.73
222 223 2.136863 TCACACCCCCTTCCTTTTACA 58.863 47.619 0.00 0.00 0.00 2.41
228 229 0.478507 CTTGTTCACACCCCCTTCCT 59.521 55.000 0.00 0.00 0.00 3.36
232 233 0.474184 CTCACTTGTTCACACCCCCT 59.526 55.000 0.00 0.00 0.00 4.79
237 238 6.857964 CCATCAATTAACTCACTTGTTCACAC 59.142 38.462 0.00 0.00 0.00 3.82
238 239 6.016360 CCCATCAATTAACTCACTTGTTCACA 60.016 38.462 0.00 0.00 0.00 3.58
239 240 6.016276 ACCCATCAATTAACTCACTTGTTCAC 60.016 38.462 0.00 0.00 0.00 3.18
240 241 6.068010 ACCCATCAATTAACTCACTTGTTCA 58.932 36.000 0.00 0.00 0.00 3.18
241 242 6.206634 TGACCCATCAATTAACTCACTTGTTC 59.793 38.462 0.00 0.00 0.00 3.18
243 244 5.630121 TGACCCATCAATTAACTCACTTGT 58.370 37.500 0.00 0.00 0.00 3.16
244 245 6.405065 CCATGACCCATCAATTAACTCACTTG 60.405 42.308 0.00 0.00 38.69 3.16
256 260 2.111613 ACCCTTTTCCATGACCCATCAA 59.888 45.455 0.00 0.00 38.69 2.57
258 262 2.379005 GACCCTTTTCCATGACCCATC 58.621 52.381 0.00 0.00 0.00 3.51
261 265 0.326927 TCGACCCTTTTCCATGACCC 59.673 55.000 0.00 0.00 0.00 4.46
267 271 1.430992 AGACCTTCGACCCTTTTCCA 58.569 50.000 0.00 0.00 0.00 3.53
287 291 2.827921 GCATTTGGTCAGACCTGGAAAT 59.172 45.455 20.82 14.50 39.58 2.17
291 295 1.004044 AGAGCATTTGGTCAGACCTGG 59.996 52.381 20.82 8.33 44.42 4.45
319 323 7.719871 ACACCTGTATGTCTAGTTCAGTATT 57.280 36.000 0.00 0.00 0.00 1.89
370 374 3.594603 TCAGGGTTTTTCACGCAAAAA 57.405 38.095 2.30 2.30 40.93 1.94
371 375 3.594603 TTCAGGGTTTTTCACGCAAAA 57.405 38.095 0.00 0.00 40.92 2.44
372 376 3.810310 ATTCAGGGTTTTTCACGCAAA 57.190 38.095 0.00 0.00 40.92 3.68
373 377 3.004944 GGTATTCAGGGTTTTTCACGCAA 59.995 43.478 0.00 0.00 40.92 4.85
374 378 2.554893 GGTATTCAGGGTTTTTCACGCA 59.445 45.455 0.00 0.00 40.92 5.24
375 379 2.817844 AGGTATTCAGGGTTTTTCACGC 59.182 45.455 0.00 0.00 38.67 5.34
376 380 5.447624 AAAGGTATTCAGGGTTTTTCACG 57.552 39.130 0.00 0.00 0.00 4.35
377 381 8.418662 AGTTAAAAGGTATTCAGGGTTTTTCAC 58.581 33.333 0.00 0.00 0.00 3.18
378 382 8.541899 AGTTAAAAGGTATTCAGGGTTTTTCA 57.458 30.769 0.00 0.00 0.00 2.69
379 383 8.857098 AGAGTTAAAAGGTATTCAGGGTTTTTC 58.143 33.333 0.00 0.00 0.00 2.29
380 384 8.777578 AGAGTTAAAAGGTATTCAGGGTTTTT 57.222 30.769 0.00 0.00 0.00 1.94
381 385 9.293404 GTAGAGTTAAAAGGTATTCAGGGTTTT 57.707 33.333 0.00 0.00 0.00 2.43
385 389 7.621796 AGTGTAGAGTTAAAAGGTATTCAGGG 58.378 38.462 0.00 0.00 0.00 4.45
433 438 4.438148 TCTTTTACAAAGCCAAGCAAACC 58.562 39.130 0.00 0.00 0.00 3.27
480 486 4.879545 ACTGGTTAAAGAACAGCGAAAAGA 59.120 37.500 0.00 0.00 37.29 2.52
515 521 1.894881 TGTTAAGCTGTGCTGCATGA 58.105 45.000 5.27 0.00 39.62 3.07
547 557 2.113986 GTGGGTGGACTGCAAGCT 59.886 61.111 0.00 0.00 37.60 3.74
550 560 2.515398 CAGGTGGGTGGACTGCAA 59.485 61.111 0.00 0.00 0.00 4.08
562 572 0.600057 GCCCAGAGAAAAAGCAGGTG 59.400 55.000 0.00 0.00 0.00 4.00
566 576 1.133823 TCACAGCCCAGAGAAAAAGCA 60.134 47.619 0.00 0.00 0.00 3.91
567 577 1.268079 GTCACAGCCCAGAGAAAAAGC 59.732 52.381 0.00 0.00 0.00 3.51
568 578 2.291741 GTGTCACAGCCCAGAGAAAAAG 59.708 50.000 0.00 0.00 0.00 2.27
581 593 6.281405 ACCTCTTAAACTACAAGTGTCACAG 58.719 40.000 5.62 0.00 0.00 3.66
599 611 2.261671 CCACGCGCACTACCTCTT 59.738 61.111 5.73 0.00 0.00 2.85
630 642 4.216257 ACGCACTGAAAGCAACTCAATTAT 59.784 37.500 0.00 0.00 37.60 1.28
813 826 2.990967 AAATGGCCACGGCTGGTG 60.991 61.111 8.16 0.00 46.57 4.17
814 827 2.990967 CAAATGGCCACGGCTGGT 60.991 61.111 8.16 0.00 40.17 4.00
815 828 3.762247 CCAAATGGCCACGGCTGG 61.762 66.667 8.16 8.86 41.60 4.85
840 853 5.094812 CGATCAAGAGAGTTCAGAGTTCAG 58.905 45.833 0.00 0.00 0.00 3.02
841 854 4.762251 TCGATCAAGAGAGTTCAGAGTTCA 59.238 41.667 0.00 0.00 0.00 3.18
842 855 5.303747 TCGATCAAGAGAGTTCAGAGTTC 57.696 43.478 0.00 0.00 0.00 3.01
843 856 5.713792 TTCGATCAAGAGAGTTCAGAGTT 57.286 39.130 0.00 0.00 0.00 3.01
844 857 5.713792 TTTCGATCAAGAGAGTTCAGAGT 57.286 39.130 0.00 0.00 0.00 3.24
845 858 6.020758 CGAATTTCGATCAAGAGAGTTCAGAG 60.021 42.308 13.45 0.00 43.74 3.35
846 859 5.802451 CGAATTTCGATCAAGAGAGTTCAGA 59.198 40.000 13.45 0.00 43.74 3.27
887 907 0.038166 TGTTTGGGGGTGAGATCAGC 59.962 55.000 3.43 3.43 43.14 4.26
922 942 3.213206 AGTGTCTTGTGCAAAGATGGA 57.787 42.857 12.42 1.52 0.00 3.41
952 972 5.502153 AATGTAGATCGACTGGTAGTGAC 57.498 43.478 7.51 0.00 0.00 3.67
1227 1247 2.833227 CCGTTGGGGGAGTTGACA 59.167 61.111 0.00 0.00 0.00 3.58
1292 1312 4.346970 GTCTCCGATCATATATGCGTCAG 58.653 47.826 7.92 5.52 0.00 3.51
1293 1313 3.181510 CGTCTCCGATCATATATGCGTCA 60.182 47.826 7.92 0.00 35.63 4.35
1298 1318 5.277297 GCTCTCTCGTCTCCGATCATATATG 60.277 48.000 6.36 6.36 43.27 1.78
1299 1319 4.814234 GCTCTCTCGTCTCCGATCATATAT 59.186 45.833 0.00 0.00 43.27 0.86
1308 1333 2.438614 TGGGCTCTCTCGTCTCCG 60.439 66.667 0.00 0.00 0.00 4.63
1331 1356 1.296755 ATGCAGCGTGCTGAGAGTTG 61.297 55.000 25.09 0.00 46.30 3.16
1332 1357 1.004080 ATGCAGCGTGCTGAGAGTT 60.004 52.632 25.09 1.80 46.30 3.01
1333 1358 1.740664 CATGCAGCGTGCTGAGAGT 60.741 57.895 25.09 4.67 46.30 3.24
1337 1370 1.893335 AACACATGCAGCGTGCTGA 60.893 52.632 25.09 10.71 46.30 4.26
1339 1372 1.239296 ATCAACACATGCAGCGTGCT 61.239 50.000 14.97 4.32 45.31 4.40
1383 1421 3.840991 ACAGATACATCGGGGTAGCTAA 58.159 45.455 0.00 0.00 37.87 3.09
1436 1474 4.097135 TCCGAACATCAAACAACACACATT 59.903 37.500 0.00 0.00 0.00 2.71
1441 1479 3.004315 ACCATCCGAACATCAAACAACAC 59.996 43.478 0.00 0.00 0.00 3.32
1449 1487 2.551887 CACAAACACCATCCGAACATCA 59.448 45.455 0.00 0.00 0.00 3.07
1475 1525 3.858696 TCCCTCCTTACCTTAGTGGAA 57.141 47.619 0.00 0.00 39.71 3.53
1483 1533 1.766461 CGCCCATCCCTCCTTACCT 60.766 63.158 0.00 0.00 0.00 3.08
1485 1535 0.463833 CAACGCCCATCCCTCCTTAC 60.464 60.000 0.00 0.00 0.00 2.34
1486 1536 0.619255 TCAACGCCCATCCCTCCTTA 60.619 55.000 0.00 0.00 0.00 2.69
1487 1537 1.281925 ATCAACGCCCATCCCTCCTT 61.282 55.000 0.00 0.00 0.00 3.36
1488 1538 1.694169 ATCAACGCCCATCCCTCCT 60.694 57.895 0.00 0.00 0.00 3.69
1489 1539 1.526917 CATCAACGCCCATCCCTCC 60.527 63.158 0.00 0.00 0.00 4.30
1490 1540 1.526917 CCATCAACGCCCATCCCTC 60.527 63.158 0.00 0.00 0.00 4.30
1493 1543 1.526917 CTCCCATCAACGCCCATCC 60.527 63.158 0.00 0.00 0.00 3.51
1615 1666 2.898729 AGTAATGATGCAGAGGACGG 57.101 50.000 0.00 0.00 0.00 4.79
1779 1830 3.610040 TGAAAGATGGTAGCACGTGAT 57.390 42.857 22.23 17.40 0.00 3.06
1783 1834 5.268544 CAATCAATGAAAGATGGTAGCACG 58.731 41.667 0.00 0.00 0.00 5.34
1786 1837 5.039333 GTGCAATCAATGAAAGATGGTAGC 58.961 41.667 0.00 0.00 0.00 3.58
1818 1869 4.126437 GCTTATTGCACTTGGGTGTTTTT 58.874 39.130 0.00 0.00 44.65 1.94
1819 1870 3.387699 AGCTTATTGCACTTGGGTGTTTT 59.612 39.130 0.00 0.00 45.94 2.43
1820 1871 2.965147 AGCTTATTGCACTTGGGTGTTT 59.035 40.909 0.00 0.00 45.94 2.83
1821 1872 2.558359 GAGCTTATTGCACTTGGGTGTT 59.442 45.455 0.00 0.00 45.94 3.32
1822 1873 2.162681 GAGCTTATTGCACTTGGGTGT 58.837 47.619 0.00 0.00 45.94 4.16
1823 1874 1.474077 GGAGCTTATTGCACTTGGGTG 59.526 52.381 0.00 0.00 45.94 4.61
1824 1875 1.075374 TGGAGCTTATTGCACTTGGGT 59.925 47.619 0.00 0.00 45.94 4.51
1825 1876 1.747355 CTGGAGCTTATTGCACTTGGG 59.253 52.381 0.00 0.00 45.94 4.12
1826 1877 1.133790 GCTGGAGCTTATTGCACTTGG 59.866 52.381 0.00 0.00 45.94 3.61
1827 1878 1.202110 CGCTGGAGCTTATTGCACTTG 60.202 52.381 0.00 0.00 45.94 3.16
1828 1879 1.089920 CGCTGGAGCTTATTGCACTT 58.910 50.000 0.00 0.00 45.94 3.16
1829 1880 1.372087 GCGCTGGAGCTTATTGCACT 61.372 55.000 0.00 0.00 45.94 4.40
1830 1881 1.063166 GCGCTGGAGCTTATTGCAC 59.937 57.895 0.00 0.00 45.94 4.57
1831 1882 1.078214 AGCGCTGGAGCTTATTGCA 60.078 52.632 10.39 0.00 46.80 4.08
1832 1883 3.819188 AGCGCTGGAGCTTATTGC 58.181 55.556 10.39 0.00 46.80 3.56
1853 1904 3.871594 ACGTAGTCCTTAATTCAGCATGC 59.128 43.478 10.51 10.51 29.74 4.06
1864 1915 4.712476 GAGGGATCTGTACGTAGTCCTTA 58.288 47.826 0.00 0.00 43.93 2.69
1874 1925 5.473846 TCATATCTTCACGAGGGATCTGTAC 59.526 44.000 0.00 0.00 0.00 2.90
1879 1930 4.688413 GCTTTCATATCTTCACGAGGGATC 59.312 45.833 0.00 0.00 0.00 3.36
1884 1935 4.872691 AGGTTGCTTTCATATCTTCACGAG 59.127 41.667 0.00 0.00 0.00 4.18
1887 1938 5.886960 ACAGGTTGCTTTCATATCTTCAC 57.113 39.130 0.00 0.00 0.00 3.18
1895 1946 7.986889 ACAAAAAGAATTACAGGTTGCTTTCAT 59.013 29.630 0.00 0.00 0.00 2.57
1945 1997 6.278363 ACTGTTGACGTTATAGAACTGTTGT 58.722 36.000 0.00 0.00 33.01 3.32
1961 2018 6.851330 GTGATAGTTTGTGCTTTACTGTTGAC 59.149 38.462 0.00 0.00 0.00 3.18
1964 2021 6.765989 TCAGTGATAGTTTGTGCTTTACTGTT 59.234 34.615 0.00 0.00 35.69 3.16
1966 2023 6.646653 TCTCAGTGATAGTTTGTGCTTTACTG 59.353 38.462 0.00 0.00 35.56 2.74
1994 2051 7.243604 TGGGTTAATCCTAAAGTTAAGTCGA 57.756 36.000 6.28 0.00 36.25 4.20
1995 2052 7.148356 GGTTGGGTTAATCCTAAAGTTAAGTCG 60.148 40.741 6.28 0.00 38.38 4.18
1996 2053 7.666804 TGGTTGGGTTAATCCTAAAGTTAAGTC 59.333 37.037 6.28 0.00 38.38 3.01
1997 2054 7.528675 TGGTTGGGTTAATCCTAAAGTTAAGT 58.471 34.615 6.28 0.00 38.38 2.24
2035 2093 8.472413 TCCAGCGACTAGTATAACAAACTTATT 58.528 33.333 0.00 0.00 0.00 1.40
2037 2095 7.395190 TCCAGCGACTAGTATAACAAACTTA 57.605 36.000 0.00 0.00 0.00 2.24
2041 2099 4.441079 GCCTCCAGCGACTAGTATAACAAA 60.441 45.833 0.00 0.00 0.00 2.83
2043 2101 2.621998 GCCTCCAGCGACTAGTATAACA 59.378 50.000 0.00 0.00 0.00 2.41
2057 2115 1.471119 AGCATTCAACATGCCTCCAG 58.529 50.000 3.17 0.00 45.59 3.86
2070 2128 3.546815 GGTGTGCGATTCATGTAGCATTC 60.547 47.826 9.44 6.77 41.88 2.67
2071 2129 2.355756 GGTGTGCGATTCATGTAGCATT 59.644 45.455 9.44 0.00 41.88 3.56
2072 2130 1.942657 GGTGTGCGATTCATGTAGCAT 59.057 47.619 9.44 0.00 41.88 3.79
2073 2131 1.338579 TGGTGTGCGATTCATGTAGCA 60.339 47.619 0.00 0.00 37.26 3.49
2074 2132 1.368641 TGGTGTGCGATTCATGTAGC 58.631 50.000 0.00 0.00 0.00 3.58
2075 2133 3.684305 TCTTTGGTGTGCGATTCATGTAG 59.316 43.478 0.00 0.00 0.00 2.74
2076 2134 3.669536 TCTTTGGTGTGCGATTCATGTA 58.330 40.909 0.00 0.00 0.00 2.29
2077 2135 2.503331 TCTTTGGTGTGCGATTCATGT 58.497 42.857 0.00 0.00 0.00 3.21
2078 2136 3.495193 CTTCTTTGGTGTGCGATTCATG 58.505 45.455 0.00 0.00 0.00 3.07
2099 2157 1.555075 TCTCTTACATGTCTGCCACCC 59.445 52.381 0.00 0.00 0.00 4.61
2107 2165 8.988064 TCACTGTCTTTTATCTCTTACATGTC 57.012 34.615 0.00 0.00 0.00 3.06
2119 2177 8.553459 AGATGAAACGAATCACTGTCTTTTAT 57.447 30.769 0.00 0.00 30.82 1.40
2120 2178 7.962964 AGATGAAACGAATCACTGTCTTTTA 57.037 32.000 0.00 0.00 30.82 1.52
2121 2179 6.867662 AGATGAAACGAATCACTGTCTTTT 57.132 33.333 0.00 0.00 30.82 2.27
2122 2180 6.293626 CCAAGATGAAACGAATCACTGTCTTT 60.294 38.462 0.00 0.00 28.57 2.52
2123 2181 5.180117 CCAAGATGAAACGAATCACTGTCTT 59.820 40.000 0.00 0.00 30.24 3.01
2124 2182 4.692625 CCAAGATGAAACGAATCACTGTCT 59.307 41.667 0.00 0.00 30.82 3.41
2125 2183 4.452455 ACCAAGATGAAACGAATCACTGTC 59.548 41.667 0.00 0.00 30.82 3.51
2127 2185 4.452114 TGACCAAGATGAAACGAATCACTG 59.548 41.667 0.00 0.00 30.82 3.66
2128 2186 4.452455 GTGACCAAGATGAAACGAATCACT 59.548 41.667 0.00 0.00 32.95 3.41
2129 2187 4.213270 TGTGACCAAGATGAAACGAATCAC 59.787 41.667 0.00 0.00 35.58 3.06
2130 2188 4.384940 TGTGACCAAGATGAAACGAATCA 58.615 39.130 0.00 0.00 0.00 2.57
2131 2189 5.551760 ATGTGACCAAGATGAAACGAATC 57.448 39.130 0.00 0.00 0.00 2.52
2135 3994 5.996219 TGTTTATGTGACCAAGATGAAACG 58.004 37.500 0.00 0.00 0.00 3.60
2173 4032 4.223556 TGGCAAAAACGGAGGTGATATA 57.776 40.909 0.00 0.00 0.00 0.86
2174 4033 3.080300 TGGCAAAAACGGAGGTGATAT 57.920 42.857 0.00 0.00 0.00 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.