>input_sequence_84727
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-----------------------------------------------------------ATGAAGTACATGGGGCAGCTG
GTGGTGGCGCTCCTGGCCTTCTCGGCGGTGGTGCTGATGGTGGCGCCGGCTGGCGTGGACGCAGCGACGTGTGACGCGCT
GCAGCTGAGCCCGTGCGCGGGCGCGATCGTCGGGAACGCGGCGCCCACGGCGGTGTGCTGCAGCAGGATGAAGGCGCAGA
GGCCGTGCATGTGCCAGTACGCGCGCGACCCCAACCTGAAGCAGTATGTCAACTCCCCCAACGGCAAGAAGGTCCTGGCC
GCCTGCAAGGTGCCCGTGCCATCATGCTAA--------------------------------------------------
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>chr1D_1_TraesCS1D01G381100
TTATTTGTATGCTATGTTTGGTTGATTTGTGCTATTTTCTATCCGAACTTTGATGAATATCGGCCGGTTTGCATGAATTT
TGTCCAGTTAGTTTGTGGTTGAAATGTATGCGGACAACGTTGGACGGCAACCTCCGGCATCCGTGTCCGTGGATTGGTCC
ACCTATTCCACGGACGGATGCCGGAACAAATTTGCGTGTCAGCGATGTAGATGCCCTAATACTGTAAAAGGAAGGGGGTG
TGAAC---AAGTGAGTTAATTGATGGGTCATGGAAAAGGGTCGAAGGTCTATTTCCAGGTCTGACCAAATGCTCTGAAGA
TAAATACTGAACTAGACATACAGGTGTACCATTCAAACCCTGAATACCCTTTTTTTTTGCGTGAAAAAC-CCTGAATACC
TTTTAACTCTACACTCAACTCTTTACCAAATGTTTTAGGTTTGCTTGGCTTTGTAAAAGAAATA-AAAAACTAGTTAGCG
CTCGATCTTTTCGCTGTTCTTTAACCAGTTAACAAATGTGTCATGCAGCACAGCTTAACAAACCTTATCATG----AGCT
TGCAGTCCACCCACCTGC--TTTTTCTCTGGGCTGTGACACTTGTAGTTTAAGAGGTAGTGCGCGTGGCCTTGTTGTGCT
AATAATTGAGTTGCTTT-CAGTGCGTGCGTCGACTAAACTTGCCAATCCTCTGCACTTTCAGATCTCCTTTTTTTCGTAG
TGCGTGGACCATTAATTTCTGCTCCATCATCATCATGTCTTCCATGAACGCAATGTGATGTGCCGCTGAGGAAAAGGCAC
ATCGTTGCACACTTGTACTGCACTGCACCAGCCGTGGCCATTTGGCCCGTGTCTGAACTCTGAACTCT-------CTTGA
TCGAAATTCGAAAGCCTATAAATACCGCTGATCTCACCCCCAAACACCCACACCATCCAAGTCCATCTTTGCACAAGACA
CTAGCTCACTAGTCACTACCAGTCGATCTACATTTCTTCGTCAGAGTTTCAGAGACGCCATGAAGTACATGGGGCAGCTG
GTGGTGGCGCTCCTGGCCTTCTCGGCGGTGGTGCTGATGGTGGCGCCGGCTGGCGTGGACGCAGCGACGTGTGACGCGCT
GCAGCTGAGCCCGTGCGCGGGCGCGATCGTCGGGAACGCGGCGCCCACGGCGGTGTGCTGCAGCAGGATGAAGGCGCAGA
GGCCGTGCATGTGCCAGTACGCGCGCGACCCCAACCTGAAGCAGTATGTCAACTCCCCCAACGGCAAGAAGGTCCTGGCC
GCCTGCAAGGTGCCCGTGCCATCATGCTAAACTGACGCATA-----TATGATCGGAGACGAGAGAGCCCAGCCAGCAA--
------CTCTCAGCAC-----GCTGCATGTGTTGATGTCCAAGTGTTTCGGTTGCCGTGTTTAGCTACCCCGATGTATCT
GTATCTGAAATTCTGAATAAATGCAGTAATAATAATGTGTGTTGTTTG------------ATGTTCGGATGGTGTTTGTG
TGAGTTCCACTAAGGTAAGGAGGGATGGGCGTTGATGGGAGAAAGAACTGTTCGTTCAAACGGCCGGTCATCATATATGG
CATATGTTTTTCTCGAACGGGCATGTGACATATAAACTCGTG-TTTTTTAGATAAAAGGATAAGCCCGTCCTCTGCATCA
TTACTATGCATATAACTATATTTATTAAAACATAAGTATCATCCTTCAGTACACTACAAAAGTAGATAAAGCCACAAACG
ACAAAAAATTAGAAAATATATCTACACACATATTCTATTATTGGACCACCATCAAAACTGGTTGAATGTATCACGTGCTA
CCATCTTTCATTGATTGCACCCGTAAAAAAAAACACCCAAGTGCAATAAGCTCCAGCGCTTTCGCATGCTGAATTAAGGA
CTACGTACAGATCCCTCGTGAAGATATGAAAGCAACCTGTAATTCTTTTTG-TTTTTATTACTCTCTACAATTATTACAA
CAGTTC-----TATAACGTCAACAGTAAAGCACAAACTATCACTGAGATATCGA-CTTAACTTTAGGATTAACCCAACCA
AACTAGCTTGCAAATAAGTTTGTTATACTAGTCGCTGGAGGCATGTTGAATGCTACATGAATCGCACACCAAAGAAGGGT
GGCAGACATGTAAGAGATAAAAGACAGTG---------------------------------------------------
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----------------------------------------------------------------------ATTCGTTTCA
TCTTGGTCACATAAACAACACTATTTACTACTATATCACCTCCGTTTTTGCCAAATTGTCCTTCATTAGGATAACCCTCC
ATATGCATGAACCACACTAAAATGTTGTCTTAAATGACACTTTGTTTTTTCAAGTACGTTTCGAACAAA
>chr1A_217
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--------------------------------------------------------TAATACCGTAAATGGATGGGGTGT
GTAGTGTAAAGTGAGTTAACTCATAGGTCAAGGAAAAGGGTCGAAGGTCTGCTTTCAGGTCTGATCAAATGCTCTGAAGA
TAGATACTGAACTAGACATACAGGTGTACCACTCCAGTC--------------------------AAAA-CCTGAATACC
TTTTAAATCTACATTCAACTCTTTACGAAATGTTTTATGTTTCTTTGGCTTCGTCAATAAAATGGAAAAACTAGTTAT-G
CTCAACTTTTTTGCTGTTCTTTAACCAGTTAACAAATGTGACATGCAGCACAGCTTAACAAACCTTATCATGGCCGGGCA
TGCAGTCCACCAACCCTGCTTTTTTCTCTGGGTTGTGACACTTGTAGTTTCAGAGGCAGTGCGCGTGGCTTTGTTGTGCT
AGTAATTGAGTTGCTTTTCAGTGCGTGCGCCGACTAAACTTGCCAATCCTATGCACTTTCAGATCTCC-TTTTTTCGTAG
TGCGTGGACCATTAATTTCTGCTTCATCGTCATCATGTCTTCCATGAACGCAATGTGATGTGCCGCTGAGGAAAAGGCAC
ATCGTTGCACACTTGTACTGCAGT-----AGCCGTGGCCATTTGGCCCGTGC-------CTGAACTCT-------CTTGA
TCGAAATTCGAAAGCCTATAAATACCACTGATCTCACCCCCAGACACTCACACCATCCAAAGCCATCTTTGCACAAGCCA
CTAGCTCACTACTCGCTACCAGTCGATCTACATTTCTTCGTCAGAGTTTCAGAGACGTCATGAAGTACATGGGGCAGCTG
GTGGTGGCGCTCCTGGCCTTCTGGGCGGTGGTGCTGATGATGGCGCCGGCCGGCGTGGACGCGGCGACGTGTGACGCGCT
GCAGCTGAGCCCGTGTGCGGGCGCGATCGTCGGGAATGCGGCGCCGACGGCGGTGTGCTGCAGCAGGATGAAGGCGCAGA
GGCCGTGCATGTGCCAGTACGCGCACGACCCTAACCTGAAGCAGTACGTCAACTCCCCCAACGGCAAGAAGGTCCTGGCC
GCCTGCAAGGTGCCCGTGCCATCATGCTAGATCGACGTCTATGATCGAGACGAGAAC----GAGAGCCCAGCCAGTGGCA
TCTCTCTGCACCGCTGCATGTGCTGCATGTGTTGATGTGTGAGTGTTT-GGTTGTCGTGAGTAGCAACCCCGATGTATCT
GTATCTGAAATTCTGAATAAATGCAG----------------------------------------------TGCTTGCG
TGAGCTCCACTAGGTA----AGAGATTGGCGTTGATGGGAGAAAGAACTGTTCGTTCAAACGGCCGGTCATCATATGTGG
CATATGTTTTTCTCGAACGGGCATGTGATGAGCTCATTTTTTAAGACAAATATAAAAGGATAAGCGCGGCCTCTGCATCA
TTACGATGCATATAACTACATTTATTAAAACATAAGTATCATCATTCAGTACATAACAAAAGTAGATACTACCACAAACG
ACGAAAAATTAGAAAATATATCTACACGCATATTCCATAATCGAACCAC-------------------------------
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--------------------------ACTACCTTATCACCTCCGTTTTTGCCAAATTACCCTTCATTAGGATAACCCTCC
ATATGCATGAACCACACTAAAATGTTATCTTAAATGACACTTTGTTTTTTCAAGTA-------------
>chr1B_238
GT------------------------------------------------------------------------------
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---GTGTACAGTGAGTTAACTCATAGGTCAAGGAAAAGGGTCGAAGGTCTGTTTTCAGGGCTGACCAAATGCTCTGAAGA
TAGATACTGAACTAGACATACAGGTGTATCATTCCACTC--------------------------AAAAACCTGAATACA
TTTTAACTCTACACTCAACTCTTTACCAAATGTTTTATGTTTCATTCTCTTTGTAAAAATAC-A-ATAAACTAGTTAA-G
CTCGACCTTTCCGCTGTTCTTTAACCAGTTAACAAATGTGACATGCAGCACAGCTTAACAAACCTTATCATG----GGCA
TGCAGTCCACCAAACCTGCTTTTTCCTCTGGGTTGTGACACTTGTAGTTTCAGAGGTAGTGCGCGTGGCCTTGTTGTGCT
AGTAATTGAGTTGCTTT-CAGTGCGTGCGTCGACTAAACTTGCCAATCCTCTGCACTTTCAGTTCTCCTTTTTTTCATAG
TGCGTGGACCATTAATTTCTGCCCCATCATCATCATGTCTTCCATGAACGCAATGTGATATGCCCCTGAGGAAAAGGCAC
ATCGTTGCACACTAGTACTGCAG-----CAGCCGTGGCCATTTGGCCCGTGT-------CTGAAGTCTGAACTCTCTTAA
TCAAAATTCAAAAGCCTATAAATACCACTGATCTCATCCCCAAACACCCACACCATCCAAAGCCATCTTTGCACAAGCCA
CTAGCTCACTACTCACTACCAGTCGATCTACATTTCATCGTCAGAGTTTCAGAGACGCCATGAAGTACATGGGGCAGCTG
GTGGTGGCGCTCCTGGCCTTCTCGGCGGTGGTGCTGATGATGGCACCGGCGGGCGCGGAGGCCGCGACGTGCGACGCGCT
GCAGCTGAGCCCGTGCGCGGGCGCGATCGTCGGGAACGCGGCGCCGACGGCGGTGTGCTGCAGCAGGATGAAGGCGCAGA
GGCCGTGCATGTGCCAGTACGCGCGCGACCCCAACCTCAAGCAGTACGTCAACTCCCCCAACGGCAAGAAGGTCCTGGCC
GCCTGCAAGGTGCCCGTGCCATCCTGCTAAATCGACGTCTATGAACTATGATAGGAGACGAGATAGCCCAGTCAGTGGCA
TAATATCTCCCTGCAC-----GCTGCAGGTGTTGATATGGGAGTGTTT-GGTTGCCGTGTGCAGTTACCCCGATGTATCT
GTATCTGAAATTCTGAATAAATGCAGTAATAATTATGTATGTTGTTGGTCATCGTGCGTTATGTTCGGATGGTGCTTGTG
TGAGCTCCACTAGGTA----AGAGATGGGCCTTGATGGGAGAAAGAACTGTTCGTTCAAACGGCCGGTCATCATATATGG
CATATGTTTTTCCCGAACAGGCATGTGACATATAACTCATGTTTTTTTTAGATAAAAGGATAAGCTCGGCCTCTGCATCA
TTACGATGCATATAATTATATTTATTAAAACATACATATCATCATTCGGTACACTACAAAATTAGATAAAGCCACGAACA
ACAAAAAATTAGAAAATATATCTACACACATATTTTATTATTGGACCACCATCAAAACTGGTTGAATGTTTCATGTCCTA
CCATCTTTCATCGATTGCACCCAATGCT-----------------ATAAGCTCCAGCGCTTTCACATGCTGAATGAAGGA
CTACATACAAATCCATCATGAAGCTCTGAAAGCAACCTGCAAAATTTTAAATTTTTTATTACTCTCTCGAATTATTGCAA
CAGTTCTAGCTTATAACATCCATAGTAAAGCACAAACTATCACTGAGATACGCGCCTTAACTTTAGGATTAACCCAACCA
AACTAGCATGCACACAAGCTCGTTATACTAGTAGGTGGGGGCATGTTAT-------ATGAATCGCACACCAAAGAAAGGT
GGCAAACATGTAAGAGCATCTCCAGCCGTTGGTCCCACAGGAGGCGCTAAAAATCGCCCCCTGGAGGTGCACCGGTGCTA
AACCGCACGCTGGCGGCGTGATGCCCCCAGTCGTGGCGCCCACGTTTTTATGAAAATTTAAATTACGCCACAAACACAGC
GCAAATTCAACCAAACTTCGGCGAGTACGTTTATATTTAAAAATATTTTACAACAAAGAAAAAAAAAGCTACTAGGCTGC
TCCTCGCCGTCTCCCTCGCCGCTCCTCGCCGCCCGCCACCCGCCGCCCTTGCAGTTCTACATGCCGAGGAGGCTGTAGAA
CCGCGTGTAGTCGCCGCCGTCGTCATCGTCGTCGCCGCCGCCGCCGTCCCTGCTGCAACCCTCCCCCGGTTGGCACGGCG
GGTTGGACGGTCCGGGGGCGTCCTCGTCGTCGTCGCTGTCGAGGATCACGACGTCGTGCTCGTCCTCGCGGCCACGTTTG
CGGGCGGCTATCTCCTCCAGGGCCCGGAGCTGCCGGACCATCTCGTCACGGAGGTAGTCGTCTCGCGCCCACTGTAGGGC
CTCCTCGTCGGAGAAGCCGCACCGGGCTATCTCCTCGTACTCCGCGGGGAGGCCGGGCTCCGGCTTGGGCGCGACGAGGA
CGAGGCGGCCAGAGGGGGGTGGAGTCGCCGATGCGGACGCCGGAGCTGCGGGTGCGCCCGCTGACAGGCCTGTCCTGGGG
CTCCGGCTTGACGGGGCGGAGGTAGGGAGAGCCGGACGAGCGGTCGGACGAGGAGGAGGACGCCCCGGGCTGCTCCATGC
GCCTCGGAGTCCACGAGCTCCCACGTCGGCGAGAGAAGGACGGGGGAGCGGGGTACTCGAGCCTCGGCGTGTTGCCGCCC
TCGATGTACTCGAGGACGGCCTCCAGCGTGCGCCCAGGCACGCCCCACCATCGGCGCCACCCCTCGGAGTTGAGCCTTCC
GGAGGGCACGACACCGTTCGTGGCCTCGAGTTGTTCGGCATGGCGGCGGCGGAAGTATGGCTCACAGAGCGGGCTGTCGG
GGACGTACCGGGGTCCTTCCCTCGCGGCCCATGGCAGGGAGGCGCGGATATGCGCGATCTCCGCATGCCACGCCGCCCCG
GTGGGCGGTGGTGGCACCGGGACCCCACAAGCGCTGATTCTCCACGCCCCGGGCACCCGCATGTCCGGAGGGACCGGGTA
CTCGGCCTTGAAGAGGAGCCGAGCTTCATCCTCGTGAAGGTGGCGGCGGCCGAAGCCGTTCGCCGCCGCGCCGTCGCCTG
GGAAGCGCTCGGCCATGCTTTGAACTGGAGACGGCGAGAGGAGAGAGAGGAAGGGGAGAAATGGCGCGTCGGCAGTGGAG
GCTCTGTGCGTGTCTCCTGCGCGCTGGGGTCGACTTATATAGGCGAAGGCGCCGCGTACGCGTGGCCGCCGCGTGTACGC
GTGGCGGGCGAGGGGACGCGGGTCGTCCGGTCTTCACTGCGCCGCCCGTGAGGCATCAATGGAGGTTGACCAGCGCGGCA
GCGCGCGGCAGCTTTGGCATTGATTCGCCGCGGGAAACGAGGCGATGAGGACGACGAAGCGGCGAGAAGAGAGACGAGTC
ACTGGCAAGGAAGGCCCGCAGCTCTTTCGCGCCAAAAACGATTCGCCCGGCGCCCCCCAGCGCGCCGGGTTCGGGTTGGG
TCCGCCGGCGCCAATTTCGGCTCGAGCCAGTGAAAACTGGGCCCTTGGGGGCGCGACTGGGCCGATTTTTTGGCGCCGGC
AGCCAAAAAGTCGCCTGGGGGGCCTTGTTGGGGGCGCGGCTGGAGATGTTCTAAGAGATAAAAGGTGGTTATTTGTTTCA
TCTTGGTCACAGAAACAACATTATTTACTACCTTATCACCTCCGTTTTTGCCAAATTACCCTTCATTGGGATGACCCTCC
GTATGCATGAACCACACTAAAATGTTGTCTTAAATGACACTTTGTTTTCTCAAGTATGTTTCAAACAAA
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----S---S----SSS
SS-SS--------------S-S--S-----S-------------------S---S-------------------------
--S-------------------------------S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSS---S-----------
-------------------------------------S----SS--------------S------------------SS-
-----S----------------------------------S-----------------------------------S--S
-----------S---SSS--------------S-----------------S-----------------------------
-S------------------------------------------------------------------------------
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----------------------S-SSSS------------------------SSSSSSS---------------------
--------------------------S---------------------------------SS---------------S--
-----------S--------------------------------------------------------------------
---------------------------------------S----------S-----------S-----------------
---------------------------------------------S----------------------------------
----------------------------------------------S---------------------------------
-------------------------------SS----SS-------------S----------------------SSS--
---------S-S--------------------------SSS-------S-----------S-------------------
---------------------------------S----S-------S---------------------------S-----
----S-------S-SSSSSS--S---------------------------------------------------------
------------------------------------S-SS-S-----------------------S--S-----------
----S--------------------------------------S------------------------------------
---------------------------------------------------------------------S---S--S---
-----------S----------SSSSSSSSSSSSSSSSSSSSSSS------------------S----------S-----
----S----S----S--S-----S-S-------------S--SSS---SSS----------------SS-------S---
-----------------S--S-S---------------------------SSSS--------------------------
-------S----S-S---S-S-----------S-S---S--------SSSSSSSSS--------------------S---
----S-----------SSSSSSS-SSSSS---------------------------------------------------
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-------------------------------------------------------------------------S------
-----------S--------S----------SS------------------------SS---------------------
--------------------------------------------------------S-----S------
>forward_124
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------------------------TGTATGCGGACAACGTTGGA------------------------------------
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>reverse_1535
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--------------GTAAGGAGGGATGGGCGTTG----------------------------------------------
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