Multiple sequence alignment - TraesCS1D01G376600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G376600 chr1D 100.000 2798 0 0 1 2798 453180698 453183495 0.000000e+00 5168.0
1 TraesCS1D01G376600 chr1D 88.769 1300 68 42 476 1737 453199101 453200360 0.000000e+00 1520.0
2 TraesCS1D01G376600 chr1D 83.736 953 105 38 806 1728 453134454 453135386 0.000000e+00 856.0
3 TraesCS1D01G376600 chr1D 85.061 656 59 21 1001 1623 453211139 453210490 1.410000e-177 632.0
4 TraesCS1D01G376600 chr1D 86.559 186 20 4 2615 2798 453147070 453147252 1.700000e-47 200.0
5 TraesCS1D01G376600 chr1D 83.981 206 22 8 2174 2372 453146705 453146906 1.320000e-43 187.0
6 TraesCS1D01G376600 chr1B 88.179 1895 156 35 950 2798 623672504 623674376 0.000000e+00 2196.0
7 TraesCS1D01G376600 chr1B 89.435 814 48 13 950 1737 623679530 623680331 0.000000e+00 992.0
8 TraesCS1D01G376600 chr1B 85.540 657 54 19 1001 1623 623689445 623688796 0.000000e+00 649.0
9 TraesCS1D01G376600 chr1B 82.393 585 69 20 2238 2798 623669034 623669608 1.950000e-131 479.0
10 TraesCS1D01G376600 chr1B 86.907 443 30 17 476 900 623672067 623672499 3.260000e-129 472.0
11 TraesCS1D01G376600 chr1B 83.480 454 23 19 476 895 623679085 623679520 2.630000e-100 375.0
12 TraesCS1D01G376600 chr1B 86.813 91 6 2 768 857 623666183 623666268 2.290000e-16 97.1
13 TraesCS1D01G376600 chr1A 92.385 801 45 10 950 1743 547886677 547887468 0.000000e+00 1127.0
14 TraesCS1D01G376600 chr1A 87.642 704 61 18 1023 1719 547863933 547864617 0.000000e+00 795.0
15 TraesCS1D01G376600 chr1A 83.699 730 61 33 1040 1716 547908414 547907690 1.090000e-178 636.0
16 TraesCS1D01G376600 chr1A 84.989 453 28 15 476 892 547886208 547886656 9.260000e-115 424.0
17 TraesCS1D01G376600 chr1A 88.083 193 16 6 2611 2798 547881386 547881576 3.630000e-54 222.0
18 TraesCS1D01G376600 chr3D 93.172 454 28 3 1 452 246609549 246610001 0.000000e+00 664.0
19 TraesCS1D01G376600 chr3D 92.544 456 28 6 1 454 417497677 417497226 0.000000e+00 649.0
20 TraesCS1D01G376600 chr3D 90.968 465 38 4 1 463 18506286 18505824 8.510000e-175 623.0
21 TraesCS1D01G376600 chr7D 92.731 454 30 3 1 452 285471146 285470694 0.000000e+00 652.0
22 TraesCS1D01G376600 chr5A 91.453 468 36 4 1 466 441174451 441174916 8.450000e-180 640.0
23 TraesCS1D01G376600 chr5A 91.850 454 33 4 1 452 380265344 380265795 5.090000e-177 630.0
24 TraesCS1D01G376600 chr2D 91.503 459 31 8 1 454 143235080 143235535 2.370000e-175 625.0
25 TraesCS1D01G376600 chr2D 90.989 455 35 6 1 452 261815717 261816168 2.380000e-170 608.0
26 TraesCS1D01G376600 chr2B 91.630 454 35 3 1 452 796818369 796818821 2.370000e-175 625.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G376600 chr1D 453180698 453183495 2797 False 5168.000 5168 100.0000 1 2798 1 chr1D.!!$F2 2797
1 TraesCS1D01G376600 chr1D 453199101 453200360 1259 False 1520.000 1520 88.7690 476 1737 1 chr1D.!!$F3 1261
2 TraesCS1D01G376600 chr1D 453134454 453135386 932 False 856.000 856 83.7360 806 1728 1 chr1D.!!$F1 922
3 TraesCS1D01G376600 chr1D 453210490 453211139 649 True 632.000 632 85.0610 1001 1623 1 chr1D.!!$R1 622
4 TraesCS1D01G376600 chr1B 623666183 623674376 8193 False 811.025 2196 86.0730 476 2798 4 chr1B.!!$F1 2322
5 TraesCS1D01G376600 chr1B 623679085 623680331 1246 False 683.500 992 86.4575 476 1737 2 chr1B.!!$F2 1261
6 TraesCS1D01G376600 chr1B 623688796 623689445 649 True 649.000 649 85.5400 1001 1623 1 chr1B.!!$R1 622
7 TraesCS1D01G376600 chr1A 547863933 547864617 684 False 795.000 795 87.6420 1023 1719 1 chr1A.!!$F1 696
8 TraesCS1D01G376600 chr1A 547886208 547887468 1260 False 775.500 1127 88.6870 476 1743 2 chr1A.!!$F3 1267
9 TraesCS1D01G376600 chr1A 547907690 547908414 724 True 636.000 636 83.6990 1040 1716 1 chr1A.!!$R1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 6427 0.030638 GACGATCTCTGCAGAGCTCC 59.969 60.0 34.48 23.71 41.8 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2665 8386 0.036164 AGGTGACAACATAGGCGCAA 59.964 50.0 10.83 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.530398 GACGGGCGAGCTCGAGATC 62.530 68.421 38.74 23.84 43.62 2.75
58 59 2.277628 GAAGTCCTCGAGCTCGCG 60.278 66.667 30.97 24.94 39.60 5.87
100 101 3.116531 GTACCGCGGTTGAGCCAC 61.117 66.667 38.94 23.64 36.97 5.01
101 102 4.382320 TACCGCGGTTGAGCCACC 62.382 66.667 38.94 0.00 36.97 4.61
171 172 3.917760 CGCCTCATCCCCCGAGTC 61.918 72.222 0.00 0.00 0.00 3.36
172 173 2.764128 GCCTCATCCCCCGAGTCA 60.764 66.667 0.00 0.00 0.00 3.41
173 174 2.143419 GCCTCATCCCCCGAGTCAT 61.143 63.158 0.00 0.00 0.00 3.06
176 177 0.760567 CTCATCCCCCGAGTCATCCA 60.761 60.000 0.00 0.00 0.00 3.41
179 180 1.130054 ATCCCCCGAGTCATCCATGG 61.130 60.000 4.97 4.97 0.00 3.66
180 181 2.111878 CCCCGAGTCATCCATGGC 59.888 66.667 6.96 0.00 0.00 4.40
181 182 2.280389 CCCGAGTCATCCATGGCG 60.280 66.667 6.96 3.27 37.51 5.69
182 183 2.280389 CCGAGTCATCCATGGCGG 60.280 66.667 6.96 9.49 37.51 6.13
183 184 2.501128 CGAGTCATCCATGGCGGT 59.499 61.111 6.96 0.00 37.51 5.68
184 185 1.592669 CGAGTCATCCATGGCGGTC 60.593 63.158 6.96 0.00 37.51 4.79
186 187 2.016393 GAGTCATCCATGGCGGTCGA 62.016 60.000 6.96 0.00 37.51 4.20
188 189 1.143838 TCATCCATGGCGGTCGAAG 59.856 57.895 6.96 0.00 35.57 3.79
189 190 1.889105 CATCCATGGCGGTCGAAGG 60.889 63.158 6.96 0.00 35.57 3.46
191 192 4.473520 CCATGGCGGTCGAAGGCT 62.474 66.667 14.96 0.00 35.01 4.58
219 220 4.559386 GACAAATCGAGCGGCGCG 62.559 66.667 27.59 20.10 40.61 6.86
232 233 3.508840 GCGCGGTGGGGAATTGAG 61.509 66.667 8.83 0.00 0.00 3.02
233 234 2.824041 CGCGGTGGGGAATTGAGG 60.824 66.667 0.00 0.00 0.00 3.86
234 235 2.440247 GCGGTGGGGAATTGAGGG 60.440 66.667 0.00 0.00 0.00 4.30
236 237 2.305607 CGGTGGGGAATTGAGGGGA 61.306 63.158 0.00 0.00 0.00 4.81
237 238 1.858739 CGGTGGGGAATTGAGGGGAA 61.859 60.000 0.00 0.00 0.00 3.97
238 239 0.411848 GGTGGGGAATTGAGGGGAAA 59.588 55.000 0.00 0.00 0.00 3.13
239 240 1.557099 GTGGGGAATTGAGGGGAAAC 58.443 55.000 0.00 0.00 0.00 2.78
241 242 1.320344 GGGGAATTGAGGGGAAACGC 61.320 60.000 0.00 0.00 45.13 4.84
260 261 4.853142 TCTGCGGGGCGATAGGGT 62.853 66.667 0.00 0.00 0.00 4.34
261 262 3.861797 CTGCGGGGCGATAGGGTT 61.862 66.667 0.00 0.00 0.00 4.11
262 263 3.400599 CTGCGGGGCGATAGGGTTT 62.401 63.158 0.00 0.00 0.00 3.27
263 264 2.590859 GCGGGGCGATAGGGTTTC 60.591 66.667 0.00 0.00 0.00 2.78
264 265 2.279918 CGGGGCGATAGGGTTTCG 60.280 66.667 0.00 0.00 39.55 3.46
265 266 2.788640 CGGGGCGATAGGGTTTCGA 61.789 63.158 0.00 0.00 38.88 3.71
275 276 2.106683 GGGTTTCGACCCGCATCTG 61.107 63.158 0.00 0.00 40.59 2.90
276 277 2.750888 GGTTTCGACCCGCATCTGC 61.751 63.158 0.00 0.00 37.78 4.26
277 278 2.435938 TTTCGACCCGCATCTGCC 60.436 61.111 0.00 0.00 37.91 4.85
278 279 3.969250 TTTCGACCCGCATCTGCCC 62.969 63.158 0.00 0.00 37.91 5.36
285 286 4.481112 CGCATCTGCCCCGCAAAC 62.481 66.667 0.00 0.00 38.41 2.93
286 287 4.133796 GCATCTGCCCCGCAAACC 62.134 66.667 0.00 0.00 38.41 3.27
289 290 4.966787 TCTGCCCCGCAAACCCAC 62.967 66.667 0.00 0.00 38.41 4.61
293 294 2.520741 CCCCGCAAACCCACAGTT 60.521 61.111 0.00 0.00 41.81 3.16
296 297 1.340211 CCCCGCAAACCCACAGTTATA 60.340 52.381 0.00 0.00 37.88 0.98
297 298 1.741145 CCCGCAAACCCACAGTTATAC 59.259 52.381 0.00 0.00 37.88 1.47
307 308 3.989104 CAGTTATACTGGCTCGGGG 57.011 57.895 0.00 0.00 42.35 5.73
310 311 1.218704 AGTTATACTGGCTCGGGGGTA 59.781 52.381 0.00 0.00 0.00 3.69
311 312 1.617357 GTTATACTGGCTCGGGGGTAG 59.383 57.143 0.00 0.00 0.00 3.18
316 317 4.091939 GGCTCGGGGGTAGCGTTT 62.092 66.667 0.00 0.00 41.03 3.60
318 319 2.818274 CTCGGGGGTAGCGTTTGC 60.818 66.667 0.00 0.00 43.24 3.68
334 335 2.356913 GCGGGTTGCGGCAAAAAT 60.357 55.556 18.23 0.00 0.00 1.82
335 336 1.080434 GCGGGTTGCGGCAAAAATA 60.080 52.632 18.23 0.00 0.00 1.40
336 337 0.459411 GCGGGTTGCGGCAAAAATAT 60.459 50.000 18.23 0.00 0.00 1.28
337 338 2.003196 CGGGTTGCGGCAAAAATATT 57.997 45.000 18.23 0.00 0.00 1.28
338 339 2.342179 CGGGTTGCGGCAAAAATATTT 58.658 42.857 18.23 0.00 0.00 1.40
339 340 3.512680 CGGGTTGCGGCAAAAATATTTA 58.487 40.909 18.23 0.00 0.00 1.40
340 341 3.304826 CGGGTTGCGGCAAAAATATTTAC 59.695 43.478 18.23 1.81 0.00 2.01
342 343 3.304826 GGTTGCGGCAAAAATATTTACGG 59.695 43.478 18.23 0.87 32.18 4.02
343 344 3.152261 TGCGGCAAAAATATTTACGGG 57.848 42.857 0.00 0.00 32.18 5.28
346 347 2.465855 GGCAAAAATATTTACGGGCCG 58.534 47.619 27.06 27.06 28.11 6.13
348 349 2.099427 GCAAAAATATTTACGGGCCGGA 59.901 45.455 31.78 21.84 0.00 5.14
350 351 2.713863 AAATATTTACGGGCCGGACA 57.286 45.000 31.78 16.89 0.00 4.02
351 352 2.943036 AATATTTACGGGCCGGACAT 57.057 45.000 31.78 23.39 0.00 3.06
352 353 2.467566 ATATTTACGGGCCGGACATC 57.532 50.000 31.78 0.00 0.00 3.06
353 354 0.393820 TATTTACGGGCCGGACATCC 59.606 55.000 31.78 0.00 0.00 3.51
364 365 4.148825 GACATCCGTGCGGGCTCT 62.149 66.667 10.94 0.00 34.94 4.09
365 366 4.457496 ACATCCGTGCGGGCTCTG 62.457 66.667 10.94 6.37 34.94 3.35
372 373 3.695606 TGCGGGCTCTGGTCTGAC 61.696 66.667 0.00 0.00 0.00 3.51
373 374 4.459089 GCGGGCTCTGGTCTGACC 62.459 72.222 19.96 19.96 39.22 4.02
386 387 4.843728 TGGTCTGACCAGAATAATGAACC 58.156 43.478 25.12 0.00 44.79 3.62
387 388 3.871594 GGTCTGACCAGAATAATGAACCG 59.128 47.826 21.70 0.00 39.48 4.44
388 389 4.382685 GGTCTGACCAGAATAATGAACCGA 60.383 45.833 21.70 0.00 39.48 4.69
389 390 4.806247 GTCTGACCAGAATAATGAACCGAG 59.194 45.833 0.70 0.00 39.48 4.63
391 392 2.872858 GACCAGAATAATGAACCGAGCC 59.127 50.000 0.00 0.00 0.00 4.70
393 394 1.867233 CAGAATAATGAACCGAGCCCG 59.133 52.381 0.00 0.00 0.00 6.13
394 395 1.485066 AGAATAATGAACCGAGCCCGT 59.515 47.619 0.00 0.00 0.00 5.28
395 396 2.696707 AGAATAATGAACCGAGCCCGTA 59.303 45.455 0.00 0.00 0.00 4.02
397 398 4.525487 AGAATAATGAACCGAGCCCGTATA 59.475 41.667 0.00 0.00 0.00 1.47
398 399 4.877378 ATAATGAACCGAGCCCGTATAA 57.123 40.909 0.00 0.00 0.00 0.98
401 402 1.001048 TGAACCGAGCCCGTATAATCG 60.001 52.381 0.00 0.00 35.02 3.34
402 403 0.319297 AACCGAGCCCGTATAATCGC 60.319 55.000 0.00 0.00 33.94 4.58
403 404 1.445582 CCGAGCCCGTATAATCGCC 60.446 63.158 0.00 0.00 33.94 5.54
405 406 0.732880 CGAGCCCGTATAATCGCCAG 60.733 60.000 0.00 0.00 0.00 4.85
408 409 1.623811 AGCCCGTATAATCGCCAGAAT 59.376 47.619 0.00 0.00 0.00 2.40
409 410 2.038557 AGCCCGTATAATCGCCAGAATT 59.961 45.455 0.00 0.00 0.00 2.17
411 412 4.081087 AGCCCGTATAATCGCCAGAATTAT 60.081 41.667 0.00 0.00 0.00 1.28
412 413 4.034048 GCCCGTATAATCGCCAGAATTATG 59.966 45.833 0.00 0.00 0.00 1.90
413 414 4.034048 CCCGTATAATCGCCAGAATTATGC 59.966 45.833 0.00 0.00 0.00 3.14
418 419 2.404083 CGCCAGAATTATGCGGGTT 58.596 52.632 8.41 0.00 44.29 4.11
419 420 0.307760 CGCCAGAATTATGCGGGTTC 59.692 55.000 8.41 0.00 44.29 3.62
420 421 0.307760 GCCAGAATTATGCGGGTTCG 59.692 55.000 0.00 0.00 39.81 3.95
442 443 4.208686 GGACGCGGGGTCTGCTAG 62.209 72.222 22.22 0.00 45.35 3.42
444 445 3.127352 GACGCGGGGTCTGCTAGAG 62.127 68.421 16.96 0.00 42.62 2.43
445 446 3.141488 CGCGGGGTCTGCTAGAGT 61.141 66.667 0.00 0.00 0.00 3.24
446 447 2.711922 CGCGGGGTCTGCTAGAGTT 61.712 63.158 0.00 0.00 0.00 3.01
447 448 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
448 449 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
450 451 0.176910 GGGGTCTGCTAGAGTTGCTC 59.823 60.000 0.00 0.00 0.00 4.26
451 452 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
453 454 2.761208 GGGTCTGCTAGAGTTGCTCTAA 59.239 50.000 7.22 0.00 41.74 2.10
454 455 3.195825 GGGTCTGCTAGAGTTGCTCTAAA 59.804 47.826 7.22 0.00 41.74 1.85
456 457 4.322049 GGTCTGCTAGAGTTGCTCTAAACA 60.322 45.833 7.22 7.52 41.74 2.83
457 458 5.230942 GTCTGCTAGAGTTGCTCTAAACAA 58.769 41.667 7.22 0.00 41.74 2.83
458 459 5.119434 GTCTGCTAGAGTTGCTCTAAACAAC 59.881 44.000 7.22 0.00 41.74 3.32
466 467 5.284428 GTTGCTCTAAACAACTCCTAAGC 57.716 43.478 0.00 0.00 43.23 3.09
470 471 5.046304 TGCTCTAAACAACTCCTAAGCATCT 60.046 40.000 0.00 0.00 33.88 2.90
471 472 5.877564 GCTCTAAACAACTCCTAAGCATCTT 59.122 40.000 0.00 0.00 0.00 2.40
472 473 6.372937 GCTCTAAACAACTCCTAAGCATCTTT 59.627 38.462 0.00 0.00 0.00 2.52
473 474 7.094592 GCTCTAAACAACTCCTAAGCATCTTTT 60.095 37.037 0.00 0.00 0.00 2.27
511 5922 1.202557 ACGTGAGGCGAGTAAAACCAA 60.203 47.619 0.00 0.00 44.77 3.67
517 5935 0.162294 GCGAGTAAAACCAACCGTCG 59.838 55.000 0.00 0.00 0.00 5.12
575 6002 3.069158 CCTTATCCGTAACGATTCCAGGT 59.931 47.826 0.00 0.00 0.00 4.00
576 6003 4.442472 CCTTATCCGTAACGATTCCAGGTT 60.442 45.833 0.00 0.00 0.00 3.50
619 6061 1.952621 TCCCGATCCCACTCTTCTTT 58.047 50.000 0.00 0.00 0.00 2.52
703 6163 2.305927 CTGGAGGGCAATACCGGAATAT 59.694 50.000 9.46 0.00 40.62 1.28
856 6334 5.371526 ACGTCGACCGGACCATATATATAT 58.628 41.667 9.46 0.00 42.99 0.86
857 6335 6.524734 ACGTCGACCGGACCATATATATATA 58.475 40.000 9.46 4.92 42.99 0.86
865 6349 7.244239 ACCGGACCATATATATATATCTCCCCT 59.756 40.741 9.46 9.79 0.00 4.79
867 6351 7.068839 CGGACCATATATATATATCTCCCCTGC 59.931 44.444 19.64 5.56 0.00 4.85
895 6389 2.746279 TCAAACAACCATCACCACCT 57.254 45.000 0.00 0.00 0.00 4.00
900 6394 1.279271 ACAACCATCACCACCTAGCTC 59.721 52.381 0.00 0.00 0.00 4.09
902 6396 0.252696 ACCATCACCACCTAGCTCCA 60.253 55.000 0.00 0.00 0.00 3.86
903 6397 0.467384 CCATCACCACCTAGCTCCAG 59.533 60.000 0.00 0.00 0.00 3.86
904 6398 0.467384 CATCACCACCTAGCTCCAGG 59.533 60.000 0.62 0.62 41.87 4.45
905 6399 0.339859 ATCACCACCTAGCTCCAGGA 59.660 55.000 9.63 0.00 39.18 3.86
907 6401 1.682684 ACCACCTAGCTCCAGGACG 60.683 63.158 9.63 1.44 39.18 4.79
909 6403 1.379977 CACCTAGCTCCAGGACGGA 60.380 63.158 9.63 0.00 43.61 4.69
911 6405 1.379977 CCTAGCTCCAGGACGGACA 60.380 63.158 0.00 0.00 39.64 4.02
912 6406 1.668101 CCTAGCTCCAGGACGGACAC 61.668 65.000 0.00 0.00 39.64 3.67
913 6407 0.965866 CTAGCTCCAGGACGGACACA 60.966 60.000 0.00 0.00 39.64 3.72
914 6408 0.965866 TAGCTCCAGGACGGACACAG 60.966 60.000 0.00 0.00 39.64 3.66
915 6409 2.276116 GCTCCAGGACGGACACAGA 61.276 63.158 0.00 0.00 39.64 3.41
916 6410 1.587054 CTCCAGGACGGACACAGAC 59.413 63.158 0.00 0.00 39.64 3.51
917 6411 2.201436 CTCCAGGACGGACACAGACG 62.201 65.000 0.00 0.00 39.64 4.18
918 6412 2.265904 CCAGGACGGACACAGACGA 61.266 63.158 0.00 0.00 36.56 4.20
919 6413 1.595993 CCAGGACGGACACAGACGAT 61.596 60.000 0.00 0.00 36.56 3.73
920 6414 0.179161 CAGGACGGACACAGACGATC 60.179 60.000 0.00 0.00 0.00 3.69
921 6415 0.322636 AGGACGGACACAGACGATCT 60.323 55.000 0.00 0.00 0.00 2.75
922 6416 0.099082 GGACGGACACAGACGATCTC 59.901 60.000 0.00 0.00 0.00 2.75
923 6417 1.088306 GACGGACACAGACGATCTCT 58.912 55.000 0.00 0.00 0.00 3.10
930 6424 3.255017 CAGACGATCTCTGCAGAGC 57.745 57.895 34.48 22.09 40.23 4.09
931 6425 0.740149 CAGACGATCTCTGCAGAGCT 59.260 55.000 34.48 27.57 40.23 4.09
932 6426 1.024271 AGACGATCTCTGCAGAGCTC 58.976 55.000 34.48 31.80 41.80 4.09
933 6427 0.030638 GACGATCTCTGCAGAGCTCC 59.969 60.000 34.48 23.71 41.80 4.70
934 6428 1.363443 CGATCTCTGCAGAGCTCCC 59.637 63.158 34.48 21.59 41.80 4.30
935 6429 1.108727 CGATCTCTGCAGAGCTCCCT 61.109 60.000 34.48 17.87 41.80 4.20
936 6430 0.675633 GATCTCTGCAGAGCTCCCTC 59.324 60.000 34.48 21.30 41.80 4.30
938 6432 0.040942 TCTCTGCAGAGCTCCCTCTT 59.959 55.000 34.48 0.00 46.16 2.85
939 6433 0.461135 CTCTGCAGAGCTCCCTCTTC 59.539 60.000 29.79 0.00 46.16 2.87
940 6434 0.251967 TCTGCAGAGCTCCCTCTTCA 60.252 55.000 13.74 0.00 46.16 3.02
941 6435 2.284824 TGCAGAGCTCCCTCTTCAG 58.715 57.895 10.93 0.00 46.16 3.02
942 6436 0.251967 TGCAGAGCTCCCTCTTCAGA 60.252 55.000 10.93 0.00 46.16 3.27
943 6437 0.175531 GCAGAGCTCCCTCTTCAGAC 59.824 60.000 10.93 0.00 46.16 3.51
944 6438 1.554836 CAGAGCTCCCTCTTCAGACA 58.445 55.000 10.93 0.00 46.16 3.41
947 6441 1.620819 GAGCTCCCTCTTCAGACAACA 59.379 52.381 0.87 0.00 35.16 3.33
953 6447 1.417890 CCTCTTCAGACAACACCCAGT 59.582 52.381 0.00 0.00 0.00 4.00
957 6451 3.136443 TCTTCAGACAACACCCAGTCATT 59.864 43.478 0.00 0.00 37.23 2.57
1012 6571 0.529555 GCGAGAGATGACCTTCAGCC 60.530 60.000 0.00 0.00 32.25 4.85
1044 6613 1.154221 GGAGGAGAGCCGGGAGTAT 59.846 63.158 2.18 0.00 39.96 2.12
1053 6622 1.005569 AGCCGGGAGTATATGATCCGA 59.994 52.381 2.18 0.00 42.94 4.55
1060 6629 4.641094 GGGAGTATATGATCCGATTCGACT 59.359 45.833 7.83 0.00 36.38 4.18
1215 6817 1.990614 GCCGGACCTCTTCTTCCCT 60.991 63.158 5.05 0.00 0.00 4.20
1236 6847 4.254709 AGCAAGGAGGCGTGCACA 62.255 61.111 18.64 0.00 43.42 4.57
1756 7452 1.406069 CCTTGGACAGAGACGATTGGG 60.406 57.143 0.00 0.00 0.00 4.12
1765 7461 2.505819 AGAGACGATTGGGTGCCTATTT 59.494 45.455 0.00 0.00 0.00 1.40
1766 7462 2.614057 GAGACGATTGGGTGCCTATTTG 59.386 50.000 0.00 0.00 0.00 2.32
1767 7463 2.026262 AGACGATTGGGTGCCTATTTGT 60.026 45.455 0.00 0.00 0.00 2.83
1786 7482 6.721571 TTTGTAGTGCTAGACAAATGCTAC 57.278 37.500 0.00 0.70 39.88 3.58
1787 7483 4.755411 TGTAGTGCTAGACAAATGCTACC 58.245 43.478 0.00 0.00 0.00 3.18
1788 7484 4.466370 TGTAGTGCTAGACAAATGCTACCT 59.534 41.667 0.00 0.00 0.00 3.08
1789 7485 5.655090 TGTAGTGCTAGACAAATGCTACCTA 59.345 40.000 0.00 0.00 0.00 3.08
1790 7486 5.269505 AGTGCTAGACAAATGCTACCTAG 57.730 43.478 0.00 0.00 0.00 3.02
1808 7504 4.944930 ACCTAGCAGTTAGACTACTGTCAG 59.055 45.833 0.00 0.00 45.76 3.51
1843 7540 1.133407 TCAACACACATGTACGACGC 58.867 50.000 0.00 0.00 38.45 5.19
1848 7545 1.131693 CACACATGTACGACGCTCCTA 59.868 52.381 0.00 0.00 0.00 2.94
1864 7561 2.294791 CTCCTAGATCCTGGTTAGCACG 59.705 54.545 0.00 0.00 0.00 5.34
1872 7569 0.108992 CTGGTTAGCACGCGTCCTAA 60.109 55.000 18.41 18.41 0.00 2.69
1888 7585 5.005107 GCGTCCTAACTTCGGTTGTAAATAG 59.995 44.000 0.00 0.00 38.76 1.73
1911 7608 3.367292 CCACCCGATCAATGGAAAAGTTG 60.367 47.826 1.41 0.00 35.33 3.16
1921 7618 6.037098 TCAATGGAAAAGTTGTGTTTAACCG 58.963 36.000 0.00 0.00 0.00 4.44
1954 7651 4.400884 AGACCACACTGTAAAATTGCAACA 59.599 37.500 0.00 0.00 0.00 3.33
1960 7657 7.114811 CCACACTGTAAAATTGCAACATCTAAC 59.885 37.037 0.00 0.00 0.00 2.34
1973 7670 5.204833 CAACATCTAACACAAAGTTGGTCG 58.795 41.667 0.00 0.00 41.50 4.79
2004 7701 2.492484 ACGGATTTTACTCACGAGCTCT 59.508 45.455 12.85 0.00 0.00 4.09
2007 7704 3.516615 GATTTTACTCACGAGCTCTGCT 58.483 45.455 12.85 0.00 43.88 4.24
2008 7705 2.354109 TTTACTCACGAGCTCTGCTG 57.646 50.000 12.85 4.43 39.88 4.41
2009 7706 0.109086 TTACTCACGAGCTCTGCTGC 60.109 55.000 12.85 0.00 39.88 5.25
2014 7711 0.108898 CACGAGCTCTGCTGCTAACT 60.109 55.000 12.85 0.00 44.17 2.24
2046 7743 3.969117 TTGCGCATTGGTATGAGAATC 57.031 42.857 12.75 0.00 33.89 2.52
2053 7750 0.468226 TGGTATGAGAATCGGGTGGC 59.532 55.000 0.00 0.00 38.61 5.01
2063 7760 0.103572 ATCGGGTGGCGTATGTGTAC 59.896 55.000 0.00 0.00 0.00 2.90
2064 7761 1.215912 CGGGTGGCGTATGTGTACA 59.784 57.895 0.00 0.00 0.00 2.90
2065 7762 0.804544 CGGGTGGCGTATGTGTACAG 60.805 60.000 0.00 0.00 0.00 2.74
2076 7773 6.238184 GGCGTATGTGTACAGTAATTTTACCC 60.238 42.308 0.00 0.00 34.19 3.69
2095 7792 9.948964 TTTTACCCTAATCTAACTGTTAACTCC 57.051 33.333 7.22 0.00 0.00 3.85
2104 7801 8.840200 ATCTAACTGTTAACTCCCAGATTAGA 57.160 34.615 7.22 10.91 36.67 2.10
2108 7805 5.426833 ACTGTTAACTCCCAGATTAGAGCAT 59.573 40.000 7.22 0.00 33.18 3.79
2125 7822 2.026262 AGCATCTTCAATGGTAACCCGT 60.026 45.455 0.00 0.00 0.00 5.28
2132 7829 6.915349 TCTTCAATGGTAACCCGTAAATTTG 58.085 36.000 0.00 0.00 0.00 2.32
2138 7835 6.064735 TGGTAACCCGTAAATTTGTAGGAT 57.935 37.500 0.00 0.00 0.00 3.24
2139 7836 5.881443 TGGTAACCCGTAAATTTGTAGGATG 59.119 40.000 0.00 0.00 0.00 3.51
2140 7837 4.976224 AACCCGTAAATTTGTAGGATGC 57.024 40.909 0.00 0.00 0.00 3.91
2141 7838 3.284617 ACCCGTAAATTTGTAGGATGCC 58.715 45.455 0.00 0.00 0.00 4.40
2142 7839 2.621526 CCCGTAAATTTGTAGGATGCCC 59.378 50.000 0.00 0.00 0.00 5.36
2143 7840 2.621526 CCGTAAATTTGTAGGATGCCCC 59.378 50.000 0.00 0.00 0.00 5.80
2144 7841 2.289547 CGTAAATTTGTAGGATGCCCCG 59.710 50.000 0.00 0.00 40.87 5.73
2215 7912 0.539438 TGGGACACCAAGATGGCAAC 60.539 55.000 0.00 0.00 45.87 4.17
2218 7915 1.586154 GACACCAAGATGGCAACGGG 61.586 60.000 0.00 0.00 42.67 5.28
2250 7950 4.782019 AGCGATTTCCTTTTGCAACATA 57.218 36.364 0.00 0.00 0.00 2.29
2318 8018 5.282055 TGACATATATATGCCTAGCAGCC 57.718 43.478 20.46 2.54 43.65 4.85
2319 8019 4.716287 TGACATATATATGCCTAGCAGCCA 59.284 41.667 20.46 4.63 43.65 4.75
2329 8029 2.834549 GCCTAGCAGCCAGGATAGATAA 59.165 50.000 11.67 0.00 34.91 1.75
2331 8031 4.080638 GCCTAGCAGCCAGGATAGATAAAT 60.081 45.833 11.67 0.00 34.91 1.40
2379 8079 5.814764 TCACTTGTTTACTAACCGCAAAA 57.185 34.783 0.00 0.00 33.15 2.44
2396 8096 8.067780 ACCGCAAAAACATATTTAACTTGTTC 57.932 30.769 0.00 0.00 32.66 3.18
2428 8128 7.546358 TGATGTTCAACTCATCTTGTGTTTTT 58.454 30.769 7.30 0.00 41.30 1.94
2436 8136 7.506328 ACTCATCTTGTGTTTTTACCCTAAC 57.494 36.000 0.00 0.00 0.00 2.34
2438 8138 5.771165 TCATCTTGTGTTTTTACCCTAACCC 59.229 40.000 0.00 0.00 0.00 4.11
2446 8146 4.639078 TTTTACCCTAACCCGTTTAGCT 57.361 40.909 0.00 0.00 36.57 3.32
2462 8162 7.387122 CCCGTTTAGCTATTTTACTCCCTTATC 59.613 40.741 0.00 0.00 0.00 1.75
2515 8216 6.099341 GGAAAGTTGCTCTTTTTGTTTCTGA 58.901 36.000 8.38 0.00 45.15 3.27
2516 8217 6.589907 GGAAAGTTGCTCTTTTTGTTTCTGAA 59.410 34.615 8.38 0.00 45.15 3.02
2517 8218 6.951256 AAGTTGCTCTTTTTGTTTCTGAAC 57.049 33.333 0.00 0.00 32.82 3.18
2521 8222 8.303876 AGTTGCTCTTTTTGTTTCTGAACTTTA 58.696 29.630 0.00 0.00 36.70 1.85
2553 8254 9.877178 ACTTGGTTTTTAATGTTACACATTTGA 57.123 25.926 7.40 0.00 45.80 2.69
2602 8323 8.601845 AAGTTGTATCATTAAAACTTTTGCCC 57.398 30.769 0.00 0.00 41.21 5.36
2606 8327 7.102346 TGTATCATTAAAACTTTTGCCCATGG 58.898 34.615 4.14 4.14 0.00 3.66
2612 8333 7.888250 TTAAAACTTTTGCCCATGGAAAAAT 57.112 28.000 15.22 0.00 0.00 1.82
2614 8335 6.788598 AAACTTTTGCCCATGGAAAAATTT 57.211 29.167 15.22 15.75 0.00 1.82
2615 8336 7.888250 AAACTTTTGCCCATGGAAAAATTTA 57.112 28.000 15.22 0.00 0.00 1.40
2616 8337 6.875948 ACTTTTGCCCATGGAAAAATTTAC 57.124 33.333 15.22 0.00 0.00 2.01
2636 8357 3.686016 ACAAATGTACCACTCCCACATC 58.314 45.455 0.00 0.00 31.82 3.06
2642 8363 1.956869 ACCACTCCCACATCTGATCA 58.043 50.000 0.00 0.00 0.00 2.92
2645 8366 2.172082 CCACTCCCACATCTGATCACAT 59.828 50.000 0.00 0.00 0.00 3.21
2646 8367 3.371273 CCACTCCCACATCTGATCACATT 60.371 47.826 0.00 0.00 0.00 2.71
2649 8370 2.577563 TCCCACATCTGATCACATTGGT 59.422 45.455 0.00 0.00 0.00 3.67
2657 8378 1.144708 TGATCACATTGGTGGTGGTGT 59.855 47.619 0.00 0.00 45.32 4.16
2658 8379 1.541147 GATCACATTGGTGGTGGTGTG 59.459 52.381 0.00 0.00 45.32 3.82
2660 8381 1.144708 TCACATTGGTGGTGGTGTGAT 59.855 47.619 3.18 0.00 44.14 3.06
2663 8384 2.237643 CATTGGTGGTGGTGTGATCAA 58.762 47.619 0.00 0.00 0.00 2.57
2665 8386 2.673775 TGGTGGTGGTGTGATCAAAT 57.326 45.000 0.00 0.00 0.00 2.32
2666 8387 2.956132 TGGTGGTGGTGTGATCAAATT 58.044 42.857 0.00 0.00 0.00 1.82
2683 8404 1.094785 ATTGCGCCTATGTTGTCACC 58.905 50.000 4.18 0.00 0.00 4.02
2692 8413 4.083484 GCCTATGTTGTCACCTGTTTACAC 60.083 45.833 0.00 0.00 0.00 2.90
2696 8417 3.055021 TGTTGTCACCTGTTTACACCTGA 60.055 43.478 0.00 0.00 0.00 3.86
2702 8423 4.879545 TCACCTGTTTACACCTGAAAGAAC 59.120 41.667 0.00 0.00 34.07 3.01
2704 8425 5.299279 CACCTGTTTACACCTGAAAGAACAT 59.701 40.000 0.00 0.00 34.07 2.71
2710 8431 7.068103 TGTTTACACCTGAAAGAACATGATTGT 59.932 33.333 0.00 0.00 37.82 2.71
2712 8433 5.835257 ACACCTGAAAGAACATGATTGTTG 58.165 37.500 0.00 0.00 46.01 3.33
2714 8435 5.916883 CACCTGAAAGAACATGATTGTTGTC 59.083 40.000 0.00 0.00 46.01 3.18
2715 8436 5.829924 ACCTGAAAGAACATGATTGTTGTCT 59.170 36.000 0.00 0.00 46.01 3.41
2716 8437 6.998074 ACCTGAAAGAACATGATTGTTGTCTA 59.002 34.615 0.00 0.00 46.01 2.59
2720 8441 8.229811 TGAAAGAACATGATTGTTGTCTATTCG 58.770 33.333 0.00 0.00 46.01 3.34
2732 8453 4.866508 TGTCTATTCGGTCACTTGTTCT 57.133 40.909 0.00 0.00 0.00 3.01
2748 8469 6.203530 CACTTGTTCTGAGTTGCTATCTTGAA 59.796 38.462 0.00 0.00 0.00 2.69
2776 8497 3.833650 TCCATGAGTTCAATGTGCCATTT 59.166 39.130 0.00 0.00 0.00 2.32
2777 8498 3.930229 CCATGAGTTCAATGTGCCATTTG 59.070 43.478 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.587933 GATCTCGAGCTCGCCCGT 61.588 66.667 30.97 16.11 39.60 5.28
24 25 4.674904 CGATCTCGAGCTCGCCCG 62.675 72.222 30.97 23.65 43.02 6.13
25 26 3.280634 TCGATCTCGAGCTCGCCC 61.281 66.667 30.97 17.03 44.22 6.13
82 83 4.382320 TGGCTCAACCGCGGTACC 62.382 66.667 34.44 28.45 43.94 3.34
83 84 3.116531 GTGGCTCAACCGCGGTAC 61.117 66.667 34.44 21.38 43.94 3.34
155 156 2.105806 GATGACTCGGGGGATGAGGC 62.106 65.000 0.00 0.00 42.09 4.70
156 157 1.476007 GGATGACTCGGGGGATGAGG 61.476 65.000 0.00 0.00 37.79 3.86
157 158 0.760567 TGGATGACTCGGGGGATGAG 60.761 60.000 0.00 0.00 39.40 2.90
158 159 0.104986 ATGGATGACTCGGGGGATGA 60.105 55.000 0.00 0.00 0.00 2.92
159 160 0.035881 CATGGATGACTCGGGGGATG 59.964 60.000 0.00 0.00 0.00 3.51
160 161 1.130054 CCATGGATGACTCGGGGGAT 61.130 60.000 5.56 0.00 0.00 3.85
161 162 1.766059 CCATGGATGACTCGGGGGA 60.766 63.158 5.56 0.00 0.00 4.81
163 164 2.111878 GCCATGGATGACTCGGGG 59.888 66.667 18.40 0.00 0.00 5.73
164 165 2.280389 CGCCATGGATGACTCGGG 60.280 66.667 18.40 0.00 0.00 5.14
165 166 2.280389 CCGCCATGGATGACTCGG 60.280 66.667 18.40 14.10 42.00 4.63
169 170 1.153449 TTCGACCGCCATGGATGAC 60.153 57.895 18.40 4.60 42.00 3.06
171 172 1.889105 CCTTCGACCGCCATGGATG 60.889 63.158 18.40 7.75 42.00 3.51
172 173 2.505982 CCTTCGACCGCCATGGAT 59.494 61.111 18.40 0.00 42.00 3.41
173 174 4.467084 GCCTTCGACCGCCATGGA 62.467 66.667 18.40 0.00 42.00 3.41
194 195 2.802667 CTCGATTTGTCGCCGCCTG 61.803 63.158 0.00 0.00 0.00 4.85
195 196 2.509336 CTCGATTTGTCGCCGCCT 60.509 61.111 0.00 0.00 0.00 5.52
196 197 4.223964 GCTCGATTTGTCGCCGCC 62.224 66.667 0.00 0.00 0.00 6.13
197 198 4.559386 CGCTCGATTTGTCGCCGC 62.559 66.667 0.00 0.00 0.00 6.53
198 199 3.913573 CCGCTCGATTTGTCGCCG 61.914 66.667 0.00 0.00 0.00 6.46
199 200 4.223964 GCCGCTCGATTTGTCGCC 62.224 66.667 0.00 0.00 0.00 5.54
200 201 4.559386 CGCCGCTCGATTTGTCGC 62.559 66.667 0.00 0.00 41.67 5.19
201 202 4.559386 GCGCCGCTCGATTTGTCG 62.559 66.667 0.00 0.00 41.67 4.35
202 203 4.559386 CGCGCCGCTCGATTTGTC 62.559 66.667 7.78 0.00 41.67 3.18
215 216 3.508840 CTCAATTCCCCACCGCGC 61.509 66.667 0.00 0.00 0.00 6.86
216 217 2.824041 CCTCAATTCCCCACCGCG 60.824 66.667 0.00 0.00 0.00 6.46
218 219 1.858739 TTCCCCTCAATTCCCCACCG 61.859 60.000 0.00 0.00 0.00 4.94
219 220 0.411848 TTTCCCCTCAATTCCCCACC 59.588 55.000 0.00 0.00 0.00 4.61
220 221 1.557099 GTTTCCCCTCAATTCCCCAC 58.443 55.000 0.00 0.00 0.00 4.61
221 222 0.039035 CGTTTCCCCTCAATTCCCCA 59.961 55.000 0.00 0.00 0.00 4.96
222 223 1.320344 GCGTTTCCCCTCAATTCCCC 61.320 60.000 0.00 0.00 0.00 4.81
223 224 1.654023 CGCGTTTCCCCTCAATTCCC 61.654 60.000 0.00 0.00 0.00 3.97
226 227 0.036306 AGACGCGTTTCCCCTCAATT 59.964 50.000 15.53 0.00 0.00 2.32
230 231 3.119096 GCAGACGCGTTTCCCCTC 61.119 66.667 15.53 0.00 0.00 4.30
241 242 4.647615 CCTATCGCCCCGCAGACG 62.648 72.222 0.00 0.00 39.67 4.18
243 244 4.853142 ACCCTATCGCCCCGCAGA 62.853 66.667 0.00 0.00 0.00 4.26
244 245 3.400599 AAACCCTATCGCCCCGCAG 62.401 63.158 0.00 0.00 0.00 5.18
245 246 3.394635 GAAACCCTATCGCCCCGCA 62.395 63.158 0.00 0.00 0.00 5.69
246 247 2.590859 GAAACCCTATCGCCCCGC 60.591 66.667 0.00 0.00 0.00 6.13
247 248 2.279918 CGAAACCCTATCGCCCCG 60.280 66.667 0.00 0.00 33.07 5.73
260 261 2.435938 GGCAGATGCGGGTCGAAA 60.436 61.111 0.00 0.00 43.26 3.46
261 262 4.467084 GGGCAGATGCGGGTCGAA 62.467 66.667 0.00 0.00 43.26 3.71
268 269 4.481112 GTTTGCGGGGCAGATGCG 62.481 66.667 0.00 0.00 40.61 4.73
269 270 4.133796 GGTTTGCGGGGCAGATGC 62.134 66.667 0.00 0.00 40.61 3.91
270 271 3.451894 GGGTTTGCGGGGCAGATG 61.452 66.667 0.00 0.00 40.61 2.90
271 272 3.978193 TGGGTTTGCGGGGCAGAT 61.978 61.111 0.00 0.00 40.61 2.90
272 273 4.966787 GTGGGTTTGCGGGGCAGA 62.967 66.667 0.00 0.00 40.61 4.26
276 277 0.610785 ATAACTGTGGGTTTGCGGGG 60.611 55.000 0.00 0.00 39.17 5.73
277 278 1.741145 GTATAACTGTGGGTTTGCGGG 59.259 52.381 0.00 0.00 39.17 6.13
278 279 2.418628 CAGTATAACTGTGGGTTTGCGG 59.581 50.000 0.00 0.00 41.19 5.69
279 280 2.418628 CCAGTATAACTGTGGGTTTGCG 59.581 50.000 6.33 0.00 44.50 4.85
280 281 2.163613 GCCAGTATAACTGTGGGTTTGC 59.836 50.000 6.33 0.00 44.50 3.68
281 282 3.686016 AGCCAGTATAACTGTGGGTTTG 58.314 45.455 6.33 0.00 44.50 2.93
282 283 3.618997 CGAGCCAGTATAACTGTGGGTTT 60.619 47.826 6.33 0.00 44.50 3.27
283 284 2.093658 CGAGCCAGTATAACTGTGGGTT 60.094 50.000 6.33 0.00 44.50 4.11
284 285 1.480954 CGAGCCAGTATAACTGTGGGT 59.519 52.381 6.33 0.00 44.50 4.51
285 286 1.202533 CCGAGCCAGTATAACTGTGGG 60.203 57.143 6.33 0.00 44.50 4.61
286 287 1.202533 CCCGAGCCAGTATAACTGTGG 60.203 57.143 6.33 3.04 44.50 4.17
289 290 0.393077 CCCCCGAGCCAGTATAACTG 59.607 60.000 0.00 0.00 45.53 3.16
291 292 1.617357 CTACCCCCGAGCCAGTATAAC 59.383 57.143 0.00 0.00 0.00 1.89
292 293 2.005370 CTACCCCCGAGCCAGTATAA 57.995 55.000 0.00 0.00 0.00 0.98
293 294 0.541296 GCTACCCCCGAGCCAGTATA 60.541 60.000 0.00 0.00 33.60 1.47
299 300 4.091939 AAACGCTACCCCCGAGCC 62.092 66.667 0.00 0.00 36.53 4.70
300 301 2.818274 CAAACGCTACCCCCGAGC 60.818 66.667 0.00 0.00 36.54 5.03
301 302 2.818274 GCAAACGCTACCCCCGAG 60.818 66.667 0.00 0.00 0.00 4.63
305 306 4.710167 ACCCGCAAACGCTACCCC 62.710 66.667 0.00 0.00 38.22 4.95
306 307 2.670592 AACCCGCAAACGCTACCC 60.671 61.111 0.00 0.00 38.22 3.69
307 308 2.559330 CAACCCGCAAACGCTACC 59.441 61.111 0.00 0.00 38.22 3.18
313 314 4.577246 TTGCCGCAACCCGCAAAC 62.577 61.111 0.38 0.00 42.60 2.93
314 315 2.852495 TTTTTGCCGCAACCCGCAAA 62.852 50.000 4.98 0.41 42.60 3.68
315 316 2.650813 ATTTTTGCCGCAACCCGCAA 62.651 50.000 4.98 0.00 42.60 4.85
316 317 1.806461 TATTTTTGCCGCAACCCGCA 61.806 50.000 4.98 0.00 42.60 5.69
318 319 2.003196 AATATTTTTGCCGCAACCCG 57.997 45.000 4.98 0.00 0.00 5.28
320 321 3.304826 CCGTAAATATTTTTGCCGCAACC 59.695 43.478 4.98 0.00 0.00 3.77
321 322 3.304826 CCCGTAAATATTTTTGCCGCAAC 59.695 43.478 4.98 0.00 0.00 4.17
322 323 3.512680 CCCGTAAATATTTTTGCCGCAA 58.487 40.909 5.91 0.38 0.00 4.85
323 324 2.735762 GCCCGTAAATATTTTTGCCGCA 60.736 45.455 5.91 0.00 0.00 5.69
324 325 1.855978 GCCCGTAAATATTTTTGCCGC 59.144 47.619 5.91 0.00 0.00 6.53
326 327 2.465855 CGGCCCGTAAATATTTTTGCC 58.534 47.619 5.91 11.75 30.58 4.52
327 328 2.099427 TCCGGCCCGTAAATATTTTTGC 59.901 45.455 5.91 4.50 0.00 3.68
328 329 3.128938 TGTCCGGCCCGTAAATATTTTTG 59.871 43.478 5.91 0.00 0.00 2.44
330 331 3.002038 TGTCCGGCCCGTAAATATTTT 57.998 42.857 5.91 0.00 0.00 1.82
331 332 2.713863 TGTCCGGCCCGTAAATATTT 57.286 45.000 0.85 5.89 0.00 1.40
332 333 2.551504 GGATGTCCGGCCCGTAAATATT 60.552 50.000 0.85 0.00 0.00 1.28
334 335 0.393820 GGATGTCCGGCCCGTAAATA 59.606 55.000 0.85 0.00 0.00 1.40
335 336 1.147600 GGATGTCCGGCCCGTAAAT 59.852 57.895 0.85 0.00 0.00 1.40
336 337 2.585698 GGATGTCCGGCCCGTAAA 59.414 61.111 0.85 0.00 0.00 2.01
348 349 4.457496 CAGAGCCCGCACGGATGT 62.457 66.667 11.42 0.00 37.50 3.06
354 355 3.695606 TCAGACCAGAGCCCGCAC 61.696 66.667 0.00 0.00 0.00 5.34
355 356 3.695606 GTCAGACCAGAGCCCGCA 61.696 66.667 0.00 0.00 0.00 5.69
357 358 2.997315 TGGTCAGACCAGAGCCCG 60.997 66.667 19.21 0.00 44.79 6.13
365 366 3.871594 CGGTTCATTATTCTGGTCAGACC 59.128 47.826 13.35 13.35 37.14 3.85
368 369 3.557595 GCTCGGTTCATTATTCTGGTCAG 59.442 47.826 0.00 0.00 0.00 3.51
369 370 3.531538 GCTCGGTTCATTATTCTGGTCA 58.468 45.455 0.00 0.00 0.00 4.02
372 373 2.222027 GGGCTCGGTTCATTATTCTGG 58.778 52.381 0.00 0.00 0.00 3.86
373 374 1.867233 CGGGCTCGGTTCATTATTCTG 59.133 52.381 0.00 0.00 0.00 3.02
375 376 1.949465 ACGGGCTCGGTTCATTATTC 58.051 50.000 12.42 0.00 41.39 1.75
376 377 3.764237 ATACGGGCTCGGTTCATTATT 57.236 42.857 12.42 0.00 41.39 1.40
377 378 4.877378 TTATACGGGCTCGGTTCATTAT 57.123 40.909 12.42 0.00 41.39 1.28
378 379 4.616604 CGATTATACGGGCTCGGTTCATTA 60.617 45.833 12.42 0.00 41.39 1.90
379 380 3.660865 GATTATACGGGCTCGGTTCATT 58.339 45.455 12.42 0.00 41.39 2.57
380 381 2.352421 CGATTATACGGGCTCGGTTCAT 60.352 50.000 12.42 0.00 41.39 2.57
382 383 1.694639 CGATTATACGGGCTCGGTTC 58.305 55.000 12.42 0.00 41.39 3.62
383 384 0.319297 GCGATTATACGGGCTCGGTT 60.319 55.000 12.42 0.00 41.39 4.44
384 385 1.288127 GCGATTATACGGGCTCGGT 59.712 57.895 12.42 0.00 41.39 4.69
385 386 1.445582 GGCGATTATACGGGCTCGG 60.446 63.158 12.42 0.00 41.39 4.63
386 387 0.732880 CTGGCGATTATACGGGCTCG 60.733 60.000 3.27 3.27 43.02 5.03
387 388 0.601558 TCTGGCGATTATACGGGCTC 59.398 55.000 0.00 0.00 0.00 4.70
388 389 1.045407 TTCTGGCGATTATACGGGCT 58.955 50.000 0.00 0.00 0.00 5.19
389 390 2.094762 ATTCTGGCGATTATACGGGC 57.905 50.000 0.00 0.00 0.00 6.13
391 392 5.143916 GCATAATTCTGGCGATTATACGG 57.856 43.478 0.00 0.00 0.00 4.02
401 402 0.307760 CGAACCCGCATAATTCTGGC 59.692 55.000 0.00 0.00 0.00 4.85
425 426 4.208686 CTAGCAGACCCCGCGTCC 62.209 72.222 4.92 0.00 43.08 4.79
428 429 2.711922 AACTCTAGCAGACCCCGCG 61.712 63.158 0.00 0.00 0.00 6.46
429 430 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
430 431 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
431 432 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
432 433 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
434 435 4.810790 TGTTTAGAGCAACTCTAGCAGAC 58.189 43.478 4.64 4.36 42.92 3.51
435 436 5.230942 GTTGTTTAGAGCAACTCTAGCAGA 58.769 41.667 4.64 0.00 42.92 4.26
436 437 5.523013 GTTGTTTAGAGCAACTCTAGCAG 57.477 43.478 4.64 0.00 42.92 4.24
444 445 4.755123 TGCTTAGGAGTTGTTTAGAGCAAC 59.245 41.667 0.00 0.00 44.57 4.17
445 446 4.968259 TGCTTAGGAGTTGTTTAGAGCAA 58.032 39.130 0.00 0.00 36.12 3.91
446 447 4.617253 TGCTTAGGAGTTGTTTAGAGCA 57.383 40.909 0.00 0.00 36.63 4.26
447 448 5.423886 AGATGCTTAGGAGTTGTTTAGAGC 58.576 41.667 0.00 0.00 0.00 4.09
448 449 7.913674 AAAGATGCTTAGGAGTTGTTTAGAG 57.086 36.000 0.00 0.00 0.00 2.43
451 452 8.512138 GCTAAAAAGATGCTTAGGAGTTGTTTA 58.488 33.333 0.00 0.00 0.00 2.01
453 454 6.071896 GGCTAAAAAGATGCTTAGGAGTTGTT 60.072 38.462 0.00 0.00 0.00 2.83
454 455 5.416013 GGCTAAAAAGATGCTTAGGAGTTGT 59.584 40.000 0.00 0.00 0.00 3.32
456 457 4.636206 CGGCTAAAAAGATGCTTAGGAGTT 59.364 41.667 0.00 0.00 0.00 3.01
457 458 4.081087 TCGGCTAAAAAGATGCTTAGGAGT 60.081 41.667 0.00 0.00 0.00 3.85
458 459 4.271291 GTCGGCTAAAAAGATGCTTAGGAG 59.729 45.833 0.00 0.00 0.00 3.69
459 460 4.189231 GTCGGCTAAAAAGATGCTTAGGA 58.811 43.478 0.00 0.00 0.00 2.94
461 462 4.192317 AGGTCGGCTAAAAAGATGCTTAG 58.808 43.478 0.00 0.00 0.00 2.18
462 463 4.189231 GAGGTCGGCTAAAAAGATGCTTA 58.811 43.478 0.00 0.00 0.00 3.09
463 464 3.010420 GAGGTCGGCTAAAAAGATGCTT 58.990 45.455 0.00 0.00 0.00 3.91
464 465 2.633488 GAGGTCGGCTAAAAAGATGCT 58.367 47.619 0.00 0.00 0.00 3.79
465 466 1.327764 CGAGGTCGGCTAAAAAGATGC 59.672 52.381 0.00 0.00 35.37 3.91
503 5914 2.031930 GTCAAAGCGACGGTTGGTTTTA 59.968 45.455 19.96 11.76 35.05 1.52
525 5952 1.527311 GTCAGTCCGTCTGTTGAAAGC 59.473 52.381 5.09 0.00 43.97 3.51
619 6061 1.586541 CCAGCAGTGACGCTAGTGA 59.413 57.895 10.99 0.00 41.38 3.41
703 6163 8.727910 GGGTTTGTTTGTTGGTTTTGTTTATTA 58.272 29.630 0.00 0.00 0.00 0.98
856 6334 0.937441 AGTGAGAGGCAGGGGAGATA 59.063 55.000 0.00 0.00 0.00 1.98
857 6335 0.043940 AAGTGAGAGGCAGGGGAGAT 59.956 55.000 0.00 0.00 0.00 2.75
865 6349 2.297701 GGTTGTTTGAAGTGAGAGGCA 58.702 47.619 0.00 0.00 0.00 4.75
867 6351 4.023707 GTGATGGTTGTTTGAAGTGAGAGG 60.024 45.833 0.00 0.00 0.00 3.69
900 6394 1.595993 ATCGTCTGTGTCCGTCCTGG 61.596 60.000 0.00 0.00 40.09 4.45
902 6396 0.322636 AGATCGTCTGTGTCCGTCCT 60.323 55.000 0.00 0.00 0.00 3.85
903 6397 0.099082 GAGATCGTCTGTGTCCGTCC 59.901 60.000 0.00 0.00 0.00 4.79
904 6398 1.088306 AGAGATCGTCTGTGTCCGTC 58.912 55.000 0.00 0.00 32.57 4.79
905 6399 0.805614 CAGAGATCGTCTGTGTCCGT 59.194 55.000 11.75 0.00 46.89 4.69
913 6407 1.024271 GAGCTCTGCAGAGATCGTCT 58.976 55.000 41.20 28.95 45.86 4.18
914 6408 3.549997 GAGCTCTGCAGAGATCGTC 57.450 57.895 41.20 27.03 45.86 4.20
918 6412 0.262580 AGAGGGAGCTCTGCAGAGAT 59.737 55.000 41.20 37.57 44.40 2.75
919 6413 0.040942 AAGAGGGAGCTCTGCAGAGA 59.959 55.000 41.20 11.83 44.74 3.10
920 6414 0.461135 GAAGAGGGAGCTCTGCAGAG 59.539 60.000 34.82 34.82 44.75 3.35
921 6415 0.251967 TGAAGAGGGAGCTCTGCAGA 60.252 55.000 17.19 17.19 34.26 4.26
922 6416 0.176219 CTGAAGAGGGAGCTCTGCAG 59.824 60.000 14.64 7.63 46.95 4.41
923 6417 0.251967 TCTGAAGAGGGAGCTCTGCA 60.252 55.000 14.64 0.00 36.71 4.41
924 6418 0.175531 GTCTGAAGAGGGAGCTCTGC 59.824 60.000 14.64 3.29 33.39 4.26
925 6419 1.554836 TGTCTGAAGAGGGAGCTCTG 58.445 55.000 14.64 0.00 33.39 3.35
926 6420 1.899142 GTTGTCTGAAGAGGGAGCTCT 59.101 52.381 14.64 0.00 34.76 4.09
927 6421 1.620819 TGTTGTCTGAAGAGGGAGCTC 59.379 52.381 4.71 4.71 0.00 4.09
928 6422 1.346068 GTGTTGTCTGAAGAGGGAGCT 59.654 52.381 0.00 0.00 0.00 4.09
929 6423 1.609320 GGTGTTGTCTGAAGAGGGAGC 60.609 57.143 0.00 0.00 0.00 4.70
930 6424 1.002544 GGGTGTTGTCTGAAGAGGGAG 59.997 57.143 0.00 0.00 0.00 4.30
931 6425 1.056660 GGGTGTTGTCTGAAGAGGGA 58.943 55.000 0.00 0.00 0.00 4.20
932 6426 0.764890 TGGGTGTTGTCTGAAGAGGG 59.235 55.000 0.00 0.00 0.00 4.30
933 6427 1.417890 ACTGGGTGTTGTCTGAAGAGG 59.582 52.381 0.00 0.00 0.00 3.69
934 6428 2.103094 TGACTGGGTGTTGTCTGAAGAG 59.897 50.000 0.00 0.00 34.57 2.85
935 6429 2.115427 TGACTGGGTGTTGTCTGAAGA 58.885 47.619 0.00 0.00 34.57 2.87
936 6430 2.620251 TGACTGGGTGTTGTCTGAAG 57.380 50.000 0.00 0.00 34.57 3.02
937 6431 3.576078 AATGACTGGGTGTTGTCTGAA 57.424 42.857 0.00 0.00 34.57 3.02
938 6432 3.646162 AGTAATGACTGGGTGTTGTCTGA 59.354 43.478 0.00 0.00 33.41 3.27
939 6433 3.997021 GAGTAATGACTGGGTGTTGTCTG 59.003 47.826 0.00 0.00 35.45 3.51
940 6434 3.646162 TGAGTAATGACTGGGTGTTGTCT 59.354 43.478 0.00 0.00 35.45 3.41
941 6435 3.997021 CTGAGTAATGACTGGGTGTTGTC 59.003 47.826 0.00 0.00 35.45 3.18
942 6436 3.807209 GCTGAGTAATGACTGGGTGTTGT 60.807 47.826 0.00 0.00 35.45 3.32
943 6437 2.744202 GCTGAGTAATGACTGGGTGTTG 59.256 50.000 0.00 0.00 35.45 3.33
944 6438 2.639839 AGCTGAGTAATGACTGGGTGTT 59.360 45.455 0.00 0.00 35.45 3.32
947 6441 2.540383 TGAGCTGAGTAATGACTGGGT 58.460 47.619 0.00 0.00 35.45 4.51
953 6447 4.871933 TGTGTCTTGAGCTGAGTAATGA 57.128 40.909 0.00 0.00 0.00 2.57
957 6451 4.322273 CCTGATTGTGTCTTGAGCTGAGTA 60.322 45.833 0.00 0.00 0.00 2.59
1012 6571 1.227089 CCTCCATTGACGCCGAGAG 60.227 63.158 0.00 0.00 0.00 3.20
1044 6613 1.960689 TGGCAGTCGAATCGGATCATA 59.039 47.619 1.76 0.00 0.00 2.15
1053 6622 0.108615 CCTCGAAGTGGCAGTCGAAT 60.109 55.000 19.96 0.00 44.98 3.34
1060 6629 3.691342 CGGGTCCTCGAAGTGGCA 61.691 66.667 0.00 0.00 41.61 4.92
1756 7452 4.755411 TGTCTAGCACTACAAATAGGCAC 58.245 43.478 0.00 0.00 32.08 5.01
1765 7461 4.466370 AGGTAGCATTTGTCTAGCACTACA 59.534 41.667 0.00 0.00 37.09 2.74
1766 7462 5.012328 AGGTAGCATTTGTCTAGCACTAC 57.988 43.478 0.00 0.00 37.09 2.73
1767 7463 6.392625 CTAGGTAGCATTTGTCTAGCACTA 57.607 41.667 0.00 0.00 37.09 2.74
1792 7488 3.889538 TGCACACTGACAGTAGTCTAACT 59.110 43.478 8.02 0.00 45.20 2.24
1793 7489 4.230657 CTGCACACTGACAGTAGTCTAAC 58.769 47.826 8.02 0.00 45.20 2.34
1802 7498 1.077123 GATCTGCTGCACACTGACAG 58.923 55.000 0.00 0.00 36.96 3.51
1808 7504 2.227149 TGTTGATTGATCTGCTGCACAC 59.773 45.455 0.00 0.00 0.00 3.82
1843 7540 2.294791 CGTGCTAACCAGGATCTAGGAG 59.705 54.545 10.36 1.00 0.00 3.69
1848 7545 1.141881 CGCGTGCTAACCAGGATCT 59.858 57.895 0.00 0.00 0.00 2.75
1864 7561 2.352503 TACAACCGAAGTTAGGACGC 57.647 50.000 9.24 0.00 33.27 5.19
1872 7569 3.340928 GGTGGCTATTTACAACCGAAGT 58.659 45.455 0.00 0.00 0.00 3.01
1888 7585 1.134946 CTTTTCCATTGATCGGGTGGC 59.865 52.381 6.08 0.00 33.01 5.01
1911 7608 4.060205 TCTCTTTGGCTACGGTTAAACAC 58.940 43.478 0.00 0.00 0.00 3.32
1921 7618 2.224305 ACAGTGTGGTCTCTTTGGCTAC 60.224 50.000 0.00 0.00 32.05 3.58
1954 7651 5.607477 TCTTCGACCAACTTTGTGTTAGAT 58.393 37.500 0.00 0.00 37.07 1.98
1960 7657 5.728351 TTAGTTCTTCGACCAACTTTGTG 57.272 39.130 12.28 0.00 34.60 3.33
1973 7670 7.115378 TCGTGAGTAAAATCCGTTTAGTTCTTC 59.885 37.037 0.00 0.00 35.80 2.87
2004 7701 3.306917 TGTTAGCGTTAGTTAGCAGCA 57.693 42.857 0.00 0.00 35.48 4.41
2007 7704 4.965062 GCAATTGTTAGCGTTAGTTAGCA 58.035 39.130 7.40 0.00 35.48 3.49
2046 7743 0.804544 CTGTACACATACGCCACCCG 60.805 60.000 0.00 0.00 44.21 5.28
2053 7750 9.585099 TTAGGGTAAAATTACTGTACACATACG 57.415 33.333 0.00 0.00 33.60 3.06
2086 7783 5.663106 AGATGCTCTAATCTGGGAGTTAACA 59.337 40.000 8.61 0.00 35.54 2.41
2088 7785 6.384015 TGAAGATGCTCTAATCTGGGAGTTAA 59.616 38.462 0.00 0.00 36.99 2.01
2091 7788 4.293494 TGAAGATGCTCTAATCTGGGAGT 58.707 43.478 0.00 0.00 36.99 3.85
2094 7791 4.760715 CCATTGAAGATGCTCTAATCTGGG 59.239 45.833 0.00 0.00 36.99 4.45
2095 7792 5.374921 ACCATTGAAGATGCTCTAATCTGG 58.625 41.667 0.00 0.00 36.99 3.86
2104 7801 2.026262 ACGGGTTACCATTGAAGATGCT 60.026 45.455 2.98 0.00 36.13 3.79
2108 7805 6.490721 ACAAATTTACGGGTTACCATTGAAGA 59.509 34.615 2.98 0.00 36.13 2.87
2115 7812 5.495926 TCCTACAAATTTACGGGTTACCA 57.504 39.130 2.98 0.00 36.13 3.25
2125 7822 3.283751 CACGGGGCATCCTACAAATTTA 58.716 45.455 0.00 0.00 0.00 1.40
2176 7873 6.264067 GTCCCATCCTAGAAATGAATCCAAAG 59.736 42.308 6.64 0.00 0.00 2.77
2177 7874 6.129179 GTCCCATCCTAGAAATGAATCCAAA 58.871 40.000 6.64 0.00 0.00 3.28
2215 7912 1.577328 ATCGCTTTCAAGTGCACCCG 61.577 55.000 14.63 4.82 36.50 5.28
2218 7915 2.030805 AGGAAATCGCTTTCAAGTGCAC 60.031 45.455 9.40 9.40 42.17 4.57
2250 7950 6.014840 AGTGATGCACCAAAAGAATGAGAATT 60.015 34.615 0.00 0.00 34.49 2.17
2291 7991 8.309656 GCTGCTAGGCATATATATGTCATATCA 58.690 37.037 25.28 17.01 40.64 2.15
2310 8010 6.070881 ACTCATTTATCTATCCTGGCTGCTAG 60.071 42.308 5.98 5.98 0.00 3.42
2396 8096 7.120285 ACAAGATGAGTTGAACATCATAAGGTG 59.880 37.037 0.00 8.09 44.29 4.00
2428 8128 5.955961 AAATAGCTAAACGGGTTAGGGTA 57.044 39.130 14.29 5.94 39.82 3.69
2436 8136 5.032327 AGGGAGTAAAATAGCTAAACGGG 57.968 43.478 0.00 0.00 0.00 5.28
2438 8138 8.882415 TGATAAGGGAGTAAAATAGCTAAACG 57.118 34.615 0.00 0.00 0.00 3.60
2477 8177 5.246883 AGCAACTTTCCATCCTAGCAAAAAT 59.753 36.000 0.00 0.00 0.00 1.82
2490 8191 5.868801 CAGAAACAAAAAGAGCAACTTTCCA 59.131 36.000 8.84 0.00 46.55 3.53
2491 8192 6.099341 TCAGAAACAAAAAGAGCAACTTTCC 58.901 36.000 8.84 0.00 46.55 3.13
2493 8194 7.154656 AGTTCAGAAACAAAAAGAGCAACTTT 58.845 30.769 3.62 3.62 42.64 2.66
2585 8306 5.815233 TCCATGGGCAAAAGTTTTAATGA 57.185 34.783 13.02 0.00 0.00 2.57
2589 8310 7.888250 AATTTTTCCATGGGCAAAAGTTTTA 57.112 28.000 20.69 5.94 0.00 1.52
2593 8314 6.360618 TGTAAATTTTTCCATGGGCAAAAGT 58.639 32.000 20.69 17.44 0.00 2.66
2602 8323 9.487790 AGTGGTACATTTGTAAATTTTTCCATG 57.512 29.630 0.00 0.00 44.52 3.66
2606 8327 8.145122 TGGGAGTGGTACATTTGTAAATTTTTC 58.855 33.333 0.00 0.00 44.52 2.29
2612 8333 5.050126 TGTGGGAGTGGTACATTTGTAAA 57.950 39.130 0.00 0.00 44.52 2.01
2614 8335 4.534500 AGATGTGGGAGTGGTACATTTGTA 59.466 41.667 0.00 0.00 44.52 2.41
2615 8336 3.330701 AGATGTGGGAGTGGTACATTTGT 59.669 43.478 0.00 0.00 44.52 2.83
2616 8337 3.691118 CAGATGTGGGAGTGGTACATTTG 59.309 47.826 0.00 0.00 44.52 2.32
2636 8357 1.814394 CACCACCACCAATGTGATCAG 59.186 52.381 0.00 0.00 45.76 2.90
2642 8363 1.144708 TGATCACACCACCACCAATGT 59.855 47.619 0.00 0.00 0.00 2.71
2645 8366 2.443958 TTTGATCACACCACCACCAA 57.556 45.000 0.00 0.00 0.00 3.67
2646 8367 2.627221 CAATTTGATCACACCACCACCA 59.373 45.455 0.00 0.00 0.00 4.17
2649 8370 1.269174 CGCAATTTGATCACACCACCA 59.731 47.619 0.00 0.00 0.00 4.17
2657 8378 3.443329 ACAACATAGGCGCAATTTGATCA 59.557 39.130 10.83 0.00 0.00 2.92
2658 8379 4.032703 ACAACATAGGCGCAATTTGATC 57.967 40.909 10.83 0.00 0.00 2.92
2660 8381 2.816672 TGACAACATAGGCGCAATTTGA 59.183 40.909 10.83 0.00 0.00 2.69
2663 8384 1.472480 GGTGACAACATAGGCGCAATT 59.528 47.619 10.83 0.00 0.00 2.32
2665 8386 0.036164 AGGTGACAACATAGGCGCAA 59.964 50.000 10.83 0.00 0.00 4.85
2666 8387 0.673333 CAGGTGACAACATAGGCGCA 60.673 55.000 10.83 0.00 0.00 6.09
2683 8404 6.618287 TCATGTTCTTTCAGGTGTAAACAG 57.382 37.500 0.00 0.00 30.95 3.16
2692 8413 6.323203 AGACAACAATCATGTTCTTTCAGG 57.677 37.500 0.00 0.00 46.78 3.86
2696 8417 7.174946 ACCGAATAGACAACAATCATGTTCTTT 59.825 33.333 0.00 0.00 46.78 2.52
2702 8423 5.582269 AGTGACCGAATAGACAACAATCATG 59.418 40.000 0.00 0.00 0.00 3.07
2704 8425 5.147330 AGTGACCGAATAGACAACAATCA 57.853 39.130 0.00 0.00 0.00 2.57
2710 8431 4.988540 CAGAACAAGTGACCGAATAGACAA 59.011 41.667 0.00 0.00 0.00 3.18
2712 8433 4.806330 TCAGAACAAGTGACCGAATAGAC 58.194 43.478 0.00 0.00 0.00 2.59
2714 8435 4.810790 ACTCAGAACAAGTGACCGAATAG 58.189 43.478 0.00 0.00 0.00 1.73
2715 8436 4.866508 ACTCAGAACAAGTGACCGAATA 57.133 40.909 0.00 0.00 0.00 1.75
2716 8437 3.753294 ACTCAGAACAAGTGACCGAAT 57.247 42.857 0.00 0.00 0.00 3.34
2720 8441 2.565841 AGCAACTCAGAACAAGTGACC 58.434 47.619 0.00 0.00 0.00 4.02
2732 8453 4.541973 TGAGCTTCAAGATAGCAACTCA 57.458 40.909 0.00 0.00 41.11 3.41
2776 8497 1.494721 ACCCAAGAGCAACCTTCTTCA 59.505 47.619 0.00 0.00 32.75 3.02
2777 8498 2.278332 ACCCAAGAGCAACCTTCTTC 57.722 50.000 0.00 0.00 32.75 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.