>input_sequence_68542
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------------------------------------------------------------------------------AT
GACCTTCAGCCTC----TCGGCGTCAATGGAGGAGA------GCCGGGAGTATATGATCCGATTCGACTGCCACTTCGAG
------GA---CCCG------AGCT------CCGCGAGCGCCG------------AGCCACCGCTGCCGTTCGCCGGCAG
GGTTTTCTCGCCAGAGCAGGAGCAGAGCGCCATGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACACCACGCCGGCGC
CGGACCTCTTCTTCCCT---GC------GAGCAAGGAGGCGTGCACAGCGTGCGGGATGGACGGGTGCCTCGGGTGCGAG
TTCTTCGGCGCGGAGGCCGGGCGCGCG--------GC-------CGCGGCATCGGACGCGCCGAGA--------------
----GCGGCGACGGCTGGCGGGCCGCAGAGGAGGCGGAGGAACAAGAAGAACCAGTACCGCGGCGTCAGGCAGCGGCCGT
GGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGACACGGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCGGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCCTTCCCCGAGCAGCA
GCAGCAGCAGCAGC---TAGGCGGCGGCGGCAAT---GCCGCGGCCAGGTCAGACGCGTGCTCGCCCTCGCCTTCGCCAC
GCAGCGCGGA---------------------------CGAGGAGGAAACAGGGGACCTGCTCTGGGACGGCTTGGTGGAC
CTGATGAAGCTGGACGAGAGCGACCTCTGCTTACTGCTCCCGGTCGACAACACCTT-------------------GGACA
GAGACGATTGGGTGCCTATTTGTAGTGCTAGACAAATGCTACCTAGCAGTTAG---------------------------
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>chr1D_1_TraesCS1D01G376600
TTGCCGGAGGAGGCGTGGCGGCGACGGGCGAGCTCGAGATCGAAGTCCTCGAGCTCGCGGCGGTTGAGGCCGGCGGCGGC
CGGGTACCGCGGTTGAGCCACCGACGCGCCTCCCGCTTGCGCGCGCCGTCAGATCTGGCGCGGCGGCGGCGCTCCGCCTC
ATCCCCCGAGTCATCCATGGCGGTCGAAGGCTCGCAGGCGGCGACAAATCGAGCGGCGCGGTGGGGAATTGAGGGGAAAC
GCGTCTGCGGGGCGATAGGGTTTCGACCCGCATCTGCCCCGCAAACCCACAGTTATACTGGCTCGGGGGTAGCGTTTGCG
GGTTGCGGCAAAAATATTTACGGGCCGGACATCCGTGCGGGCTCTGGTCTGACCAGAATAATGAACCGAGCCCGTATAAT
CGCCAGAATTATGCGGGTTCGCGCCGGACGCGGGGTCTGCTAGAGTTGCTCTAAACAACTCCTAAGCATCTTTTTAGCCG
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-------------------------------------------------ACCTC-GGCGCCACGTGAGGCGAGTAAAACC
AAC-------CGTCGC---------TTTGACGCTTTCAACAGACGGACTGACGGACCGACCTTATCCGTAACGATTCCAG
GTT--CC-ATGGGCCATGGGTCCATCACATCCCGATCCC-ACTCT-----T------CTTTCACTAGCGTCACTGCTGGC
G------------------TCCACACGCTGAGGCTGTCGGCTCGGCTCGGCTGTCCCTCCCCTGGAGGGCAATACCGGAA
TAT---AATAAACAAAAC------CAACAAACAAACCCGAGGCCCCCGAACGCGCACGTTTCGCACGCGTT-GTTGAGCT
AGCCCCCATCCAAA-ATCCAAAATGGTCGGT-CCCTCTG------TTCTGCATGCGCCGCGTCCCCTGCGACGTCGACCG
GACCATATATATATAT------CTCCCCTGCCTC----------TCACTTCAAACAACCATCACCACCTAGCTCCAGGAC
GGACACAGACGATCTCTGCAGAGCTCCCTCTTCAGACAACACCCAGTCATTACTCAGCTCAA-GACACAATCAGG-----
------------------------------------------CAATCAGCGGCAGCGA-------------G----AGAT
GACCTTCAGCCTC----TCGGCGTCAATGGAGGAGA------GCCGGGAGTATATGATCCGATTCGACTGCCACTTCGAG
------GA---CCCG------AGCT------CCGCGAGCGCCG------------AGCCACCGCTGCCGTTCGCCGGCAG
GGTTTTCTCGCCAGAGCAGGAGCAGAGCGCCATGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACACCACGCCGGCGC
CGGACCTCTTCTTCCCT---GC------GAGCAAGGAGGCGTGCACAGCGTGCGGGATGGACGGGTGCCTCGGGTGCGAG
TTCTTCGGCGCGGAGGCCGGGCGCGCG--------GC-------CGCGGCATCGGACGCGCCGAGA--------------
----GCGGCGACGGCTGGCGGGCCGCAGAGGAGGCGGAGGAACAAGAAGAACCAGTACCGCGGCGTCAGGCAGCGGCCGT
GGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGACACGGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCGGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCCTTCCCCGAGCAGCA
GCAGCAGCAGCAGC---TAGGCGGCGGCGGCAAT---GCCGCGGCCAGGTCAGACGCGTGCTCGCCCTCGCCTTCGCCAC
GCAGCGCGGA---------------------------CGAGGAGGAAACAGGGGACCTGCTCTGGGACGGCTTGGTGGAC
CTGATGAAGCTGGACGAGAGCGACCTCTGCTTACTGCTCCCGGTCGACAACACCTT-------------------GGACA
GAGACGATTGGGTGCCTATTTGTAGTGCTAGACAAATGCTACCTAGCAGTTAGACTACTGTCAGTGTGCAGCAGATCAAT
CAACACACA-TGTACGACGCTCCTAGATCCTGGTTAGCACGCGTCCTAACTTCGGTTGTAAATAGCCACCCGATCAATGG
AAAAGTTGTGTTTAACCGTAGCCAAAGAGACCACACTGTAAAATTGCAACATCTAACACAAAGTTGGTCGAAGAACTAAA
CGGATTTTACTCACGAGCTCTGCTGCTAACTAACGCTAACAATTGCGCATTGGTATGAGAATCGGGTGGCGTATGTGTAC
AGTAATTTTACCCTAATCTAACTGTTAACTCCCAGATTAGAGCATCTTCAATGGTAACCCGTAAATTTGTAGGATGCCCC
GTGCCCCGTGCGCGCCGGCCTTTTTTGTTGATCTTTGGATTCATTTCTAGGATGGGACACCAAGATGGCAACGGG---TG
CACTTGAAAGCGATTTCCTTTTGCAACATAATTCTCATTCTTTTGGTGCATCACTAAAAAAACGTATATTTGATATGACA
TATATATGCCTAGCAGCCAGGATAGATAAATGAGTTAAATTATTATGCATGCAATTTCACTTGTTTACTAACCGCAAAAA
CATATTTAACTTGTTCACCTTATGATGTTCAACTCATCTTGTGTTTTTACCCTAACCCGTTTAGCTATTTTACTCCCTTA
TCATTGTACAATTATTA-TTTTTGCTAGGATGGAAAGTTGCTCTTTTTGTTTCTGAACTTTAAAGTAACTTGGTTTTTAA
TGTTACACATTTGACGTTAATTGTAATACAAACATGTAAGTTG--------------------TATCATTAAAACTTTTG
CCCATGGAAAAATTTACAAATGTACCACTCCCACATCTGATCACATTGGTGGTGGTGTGATCAAATTGCGCCTATGTTGT
CACCTGTTTACACCTGAAAGAACATGATTGTTGTCTATTCGGTCACTTGTTCTGAGTTGCTATCTTGAAGCTCATCCATG
AGTTCAATGTGCCATTTGAAGAAGGTTGCTCTTGGGTA
>chr1D_476
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---------------------------------------------------------------------------AGCCG
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-------------------------------------------------ACCTC-GG-GCCACGTGAGGCGAGCAAAACC
ATCTGAGAACCGTCTC---------TTTGACCCTTTCAACGAACGGACTGACGGACCGACCTTATCCGTAACGATTCCAA
G--CCCC-ATGGGCCATGGGTCCATCGCATCCCGATCCCCACTCTCTTCTT------CTTCCACTAGCGTCACCGCTGGC
GAT-------CCCATCGCGTCCACACGC--AGGCTGTCGGCTCGGCTCGGCTGTCCCTTCCCTGGAGGGCAATACCGGAA
TAAACA----------------------AAACAAACCCGGGCACCCCGAACGCGCACGTTTCGCACGCGTT-GTTGAGCT
AGCCCCCATCCAAA-ATCCAAAATGGTCGGTGCCCTCTG------TTCTGCATGCGCCGCGTCCCCTGCGACGTCGACCG
GACCATATATATACCTACCTCCCTCCCCAGACTC----------TCACTTCAAACAACCATCACCACCGAGCTAC-CTCC
AGCCT-------------------------------------CCAGCCATCACTCAGCTCAAAGACACAATCAGG-----
------------------------------------------CAATCAGCGGCGGCGAGAACACACACAGAGTCACAGAT
GACCTTCAGCGTC----TCGCCGGCGACGGGGGCGA------GCCAGGAGTACATGATCCGGTTCGACGGCCACTTCGAG
------GA---CCCG------AGCTCCGCGGCCGCGAGCGCCG------------AGCCACCCCTGCCGTTCGCCGGCAG
GGCTTTCTCGCCACAGCAGGAGCAGAGCGCCATGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACACCACGCCGGCGC
CTGACCTCTTCTTCCCG---GC------GCGCAAGGAGGCGTGCACGGCGTGCGGGATGGACGGGTGCCTCGGGTGCGAG
TTCTTCGGCGCGGAGGCCGGGCGCGCG--------GT-------CGCGGCATCGGACGCGCCGAGA--------------
----GCGCCGGCGGCCGGCGGGCCGCAGAGGAGGCGGAGGAACAAGAAGAACCAGTACCGCGGCGTCAGGCAGCGGCCGT
GGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGACACGGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCTCCTTCCCCGAGCAGCA
GCAGCAGCAGC------TAGGCGGCAGCGGCAAT---GCCGCGGCCAAGTCAGACGCGTGCTCGCCCTCGCCTTCGCCCC
GCAGCGCGGA---------------------------CGAGGACGAAACAGGGGACCTGCTCTGGGACGGCTTGGTGGAC
TTGATGAAGCTGGACGAGAGCGACCTCTGCTTACTGCTCCCGGTCGACAACAC---------------------------
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>chr1B_476
AGCTAGCCCCCATCCCGAAAAAGGTCGGTGACCTCTGTTTTGCATGCGCCGCGTCCCCTGCGACGTCGACCGAAGCATAT
ATATATTTCACTCCCGGAAAAAGTCCATTTTAAACCCTGAATTTGTAGAGGTTGGGTGAAACGAACCCTCAAGTCAAAAT
CCCTGTCGATTGCACCCTGAACTATGCAATCCCGGTCTAAATCAAACCCTGACGAATGTCAACCGGGATTTCTCTGGCTG
GTGAGCCAGGGCTCTGCTGGGCCACCCCATTTATTCTTTTTTGTCTGCAAAAAAATTGTTTTTTTTCTGTTACACGGGAG
CTCGACCTGACGCACGCAGTGGCACCTGGCTGGGCCGGCCCATGGTGTACGATAACGTCCGTACTAGCGTCACAATTTTT
CTTAAAAAAAAGTAACGTAACAATTTGATTGTCGAAAAAGATAAACGATTGCACCCTGAACTATGCAATCCCGGTCTAAA
TCAAACCCTGACGAATGTCAACCGGGATTTCTCTGGCTGGTGGGCCAGGGCTCTGCTGGGCCACCCCATTTATTTTTTTT
GTCTGCAAAAAAATTGTTTTTTTTTCTGTTACACGGGAGCTCGACCCGACGCACGCAGTGGCACCTGGCTGGGCCGGCCC
ATGGTGTACAATAACGTCCGTACTAGCGTCACAATTTTTCTCAAAAAAAAAGTAACGTAACAATTTGATTGTCGAAAAAG
ATAAAACAGCAAGTCCTACAATTCGAACTACGGATCTGTAGATCCCAAGGACACTTGCTAAACCAGTCAACCTAACAAGC
CTGTGTTACTAAACTGGAGTGCGCAAGTTTAAGAAAAAAGTTAAGCGCAGAATCAGGGCGGTTTTTTTAGTATCCTTTCC
TGCAATTTTTTTTAAAAGAGAGTAATGTTTGAAAATCTAACAATTGTTGAACGCGTGAAACTTTTCCCAAAGAAAGTGAT
TTTTTCCCGAATCCATCGAATTTTCTTTTGAAATTCCGTGAGCTTATTTTCAAAATCATTGTACTCCTTCTAAATCTGTG
AACATTTTTTTTCAAAAATTGTAAACTTTTTTATTTTAAAAATCTGGTTCACGATGTTCTTATTTTTCGTTTGCTATTTC
CTACTAAGATGGCCACCGATTTTATATGGTATAAAATATTTCAAGCACTATTGACCATGGAGTGTACCCGTCCTCCGCGC
TGGGCCGCCCCATTTTTTTCTGTTTCACTGCTAAAGAAAAGCGCGCACCTTTTTATCTAATTCGTGAACCTTTTTTCAAT
ATGCTTGTTTCAAATTCATGAATCTTGTTACAAAACCCATGGACCTTTTAATATACATTGAATTTTTTTAATACACAACT
AAAATTTGTTATATACACATTAAACATTTTTGTGATATACGCTAAACAATTTGTAAATACATAACAAACACTACAGTGAT
ATGTGCTAAACAATTTGAAAATACACAATGAACATTACTGTGATGTATACTGAACAATTTGAAAATACATATTGAACATT
TTTTCATATATGCTGAACATTGTTTTTCATATATGTTGAACATTTTTAAGTACATAAATGAATATTTTTTATTATATGGA
CATTTTCTTAAATATACGATGAACTTTTTTTAATAACTGATAAACTCTTGTATAATGCACAAAAAGGAAGAGAAGTAAAA
ATAAACAGAAGAAACACAGCTTGTTCGCCATATTAAAGTATCATTAATGATTAAAAATGCATGATGAAACATTTCCTTGT
AATGTATTAATGGAAGAAAAAGGAAAAGGAAAAAAAAGGAAAAAAGATAAAATAAAACAAAAAAGTCAACAGCAGAAACG
AACTAAAAAAACAAAGCAGTGAACTAGCAATATGCGCTGCTGCGAAATGGGTGTAGCCACTGCTGTTTGCTGCGCACGGG
CGGCAAATAGGAATACGCCAGCAATCCCGGCCATTCTTTGCAATCCCTGTCTGGCAAACGGCTCCAGGGTTTGATTCATA
CCGGAATTATATAGTTCAGGGTTGAAACGACCGGAATTTAGACTTGAAGGTTTGATTCGTCAAAGCTCTACGAGTTTAAG
GTTTAAAATGGACTTTTTCCTTTCACTCCCCCGCCTCACTTGTTCCCCATCGCTTCAAACGACAAACACCAAGCCAGAGA
CGTGAGCTTTGTAATAAAAAAGAAAGAAAAATAACTGCACCAAAAAAGAGAGTCAGAGGACGGGAGCGACTGTGAAAGAT
TAAGTGTGTGATTAGCAAAAGGGCATCATGTGTTAGTGCAGTCTGTCAGCGTGCTCGGAGAGAGCCGGCCAGTCCGCCGC
TGCACGGAGGACTCCCCTCGACGCCGGCCGGTTCGGGTGGTCCACGACGGCCGTCTTTCTCTTTGCTTTGCTTGTCGAGA
CGAAGCAAACCCATGGCGCTGGAGTGTGGGAGAGGTCAGAGGTAGGTCCGCAGGCGCGGCGTCGAGAGAATCAGTTTAAC
ACAACATGCATGTACAGGGCTGGGTTTATACGACGTTCTCTACGTACTGTGAATTGTGATTAGCATCTTCAACGCGGCGA
CAGAGTACTGCCGTGCCATCTGCTACTTCAACGCAAAGAGGTTTTGACATTGTTGACGTGGACTATATACAGGATAAACA
AAACTAGTCCGATCTGCTGTGGACGCCCCGCGCTCCGGGCGAGCTGTCTCCGGTCTGGCACCGTCGCTTTCACCCCGGGC
GTCTCGTCAGCCAGAGCGAGTCATCTCCACTCTGATGCCCCGTCCGCGCCAGCCTTTTGTTTCTGTTCCAAACCGGTATC
GTTGGATTCATTCCTAGGGTTGGGTGGGACACCACGATGGCAACGTTCCAGCCTTTCCCAACATGATTCTCATTCTTTTG
GTGCCTCACTAAAAAACCTACTATATTCGATATGGTGCTTAGCAGCCGGGATAGATACTTGAGTTAAATTATTATGTATG
CAACTTAGCTTGTTTACTAACCGCAAAAAGAAATTTAACTTGTTTACCTTGAGATGTTCAACTCATCTTGTGTTTTTGCC
CTAACCTGTTTAGCAATTTTACTCCCTTATCATTGTACAATTTTTTTTTTTGCTTGGACTGAAAGCTGCTCTTTTTTTCA
TTTCTGAATTTTTAAGTAACTTGGTTTTTAATGTTACACATTTGCCGTTAATTGTAATACAACATGTAAGTTGAAGGTTT
CGGAGGAAAACTACACCATCAAACCTTTTGCCCATGAAAATTATAAAATGTACCATTCCTACATCTAATCACACAGGCGG
TGGTGCGATTGGATTGCGCCTATGTTGTCGCCGGTTTACACATGAAAGTACATGATTGCTCTCGGTTTGGTCACTTGTTC
TGAGTTGCTCTCGGCTCGGTCATCCATGAGTTCAGTGTGCCAATCGAAGAAGGTTGCTCTTCGGTAAAGTAGTTTAGCTT
TGTCACAATGTCCATTCGGTGGTGTCACAATTGTAGTTTTTTTTTTTGCGGGATAATTGTAGTTTGTGACCTCTCCCGCC
CTTGAACCATGTGCTTCGCGTAAAAGCCTACCCATCTGGGTTAGGCGATGACATCGGCCTAACATCGCTTTCCTTTTTGG
GGAGTAACTTCGAAGGCTCTTCTTTATCTGAATCACACTTCTCTCGGGGCTGGACGCATACAACACTGTGGTCGTCATGT
GCCCAGCCAATGTGTGCAGCCAAGATGACAACGTTGAGTGGTGGTTCGGCTGCACCGAGATTGTATTAGTTAACTCACTG
ACATGCCTGCTCATTCGGTTTCCACGTGATCTAATGCGGTACTCTCCTTGCATATTTTCCCATTGTTGCTCGCCTATGAA
AACGAAGATGTCTAGCCGCAGGGGTGTGTGCCTGGCTATTTGGCACAGGTCGACATGGACATTGTGCAGTGGCTACAGTA
AGGTCTTCGTTAGTGGCCAGTCGTGTTGACGTCGTAGACGTTGTCTCGAGGAGGAATGATAACGATAACATTTGTGTGAA
GCATGTGTTGGTAATTAGGCTGGCCAGTCATGGCTCGTCATGTTCCATGATAGTTGCTCGTTACTGTTTCCATCTGATTT
TTCGTTAATTGGTTTGAATGATTACTATTTTTGATAAACGGATTGACACGACACAAGAACCCAGAAGTGTCACGTCTACA
CCATACAAGTCACTAGTGTAACCAGGCCACACACGCGTCATGCACGACGCATAATTGGTTTGATGTCAAAAGTTGGCATG
CCAAATTTTGGCAACCGCCAAATATTGGCTAGAGATTGGTTGCTTGCCAATTCTCATTGCCAATCTCACAAAAAATTGCC
AAATGTTGGCAATTTTTGATTTTGTCAAATGTTGGCTTGCCAAATATTGGCAATGCCAAATGTTGGTAGCAAACCAATTA
TGCTCTAAACACCAACGGTCGAAAGTATCTGCGCAGCGAAGCTAACCGTCACGCAATTACTTGTCACTATTGTGAGCACA
AAGAGATATTGACGTTTTCGACCTTGACCGGAGAACAAAAAATATCCATCCGTGGACGCCCCGCGGCTCAGGAGGGAGGA
GCTGTCTCCGCTCTGTCAGCGTCGCTTTCAGTTCACCACGGGCGGGTCGTGAGCGAGAGCGAAGAGCCATCTCCGTGGCT
CAGTGCGCACCCATGTACACCAGCAGCCAGCCTTTTGTTGATTTGTTCCAAACACGGACCGGGCACGTCGCCTAGTACAT
GCACATTTTTAGATGCTTCTTAGCCTCTTAGGACAACGACGTCCCGTGCATATAAAAGCGAATTCTTTTGAAGGCATTGA
GGGACATGGTTCTCATTCTCTTGGTGCCAGAGTAAAAAATGTTGTTGTGATGGGGCATATATTAAGCCGACAGCCCGGGT
AGACAGTAACGCATGAGTTAATTATGCATGCGGATCATCAATTCATCATGTTTTTTTTTTACTTTAACCTCTTTATCCTT
GTACATTTCTTGTGGATAGCACTGAAAGTTGCTTCTTTTGTTTCTTTTGCTTCCCAATATACTACTTTAAGTATCTTGGT
TTTAAATGTTCGGAATTTGCGGTTAAGCTTTCGATTGGAATGAAAAGAGTAAAAAGAAGCACAATCTTACTCCCCGCTAC
GCCAAAACACTACATCTATGCTTTCTCGACCGCTGCTTTTACGAGTTCCTGAGTTTAAATAAGTTTGCTTCGTTGAGACC
AAGGCCTAGAGATGGAAGTGAGCTTTGCACACAACACGTCGCCGATGGATGCAGGAGAGATAATCTTTGGCATCCCAAAA
AAATTGCATGTATTTTTATTTTCTATAAAGATGTTTTCATAAGGTTTTCTTCTATACTTCCTCCGTTTTTATTTACTCTG
CATATTAGAGTTGACTGAAGTCAAACTTCGTAAAGTTTGACCAAGTTTATAGAAAAAAGTATAGACATTTATCTAGTAAA
TCTATACGATGTGAAAGTACATTCATTAATAAATCAAATGTTGTTGATTTGTTATTGTATATCTTACTATTTTTGTTTAT
AAACTTGGTCAAAGTTAGTAAAGCTTGACTTTGACCAAAACTAATACTCCCTCTATCCATTTATATAGGGCCTAATATGT
TTTTCAAGGCTAACTTTGACCATACATTAGAGCAATAATATATGACATGCAAGTTACACAAAGCATACCGTCAAATTCGT
ACGTGAAAGGAGCTTCGGATGATATAATTTTCACATTATACATCTCATATACTATTAACCTTATCAATAGTCAAAGGCAA
TCTCGAAAAATGTATTAGGCCTTATATAGAGTATGCGAACTAAATAAAAACGGAGGGAGTACTTAATAAATGGCATTTTG
TCTTTACTCGAAAGAAAAAAAAACAAGCTACTAGTAGGTGCATCAGCCGACCTC-GGCGCCACGTGAGGCGAGCAAGACC
ATC-------C-TCTC---------CTTGACCCTTTCAACAGACGGGCCGACGGACCGACCTTATCCGTAACGATTCCAG
G-CCCCC-ATGGGCCATGGGTCCATCGCATCCCGATCCC-ACTCTCTGCTT------CTTCCACTAGCGTCACTGCTGGC
GAT-------CCCCTCGCGTCCACACGC--AGACGCTG--------TCGGCTGTCCCTCGCCTGGAGGGCAATACCGGAA
TAAACAAA--------AC------CAACAAACAAACCCGAGGCCCCCGAACGCGCACGTTTCGCACGCGGTCGATGAGCT
AGCCCCCATCCAAA-ATCCAAAATGGTCGGTGCCCTATG------TTATGCATGCGCCGCGTCCCCTGCGACGTCAACCG
GAGCATATATATACCTCTC-CCCTCCCCCCAGAC----------TCACTTCAAACAACCATCACCCCCGAGCTA------
--CCT-------------------------------------CCAGCCATCACTCAGCTCAA-GACACAATCAGG-----
------------------------------------------CACTTATCGACAGCAAGAACACACA-------------
GACCTTCACCGTCACTGTCGGCGTCAATGAAGGCGA------GCCGGGAGTACATGATCCGCTTCGAAGGCCACTTCGAG
------GAGGACCCG------AGCT------CCACGACAGCCG------------AGCCACCACTGCCGTTCGCCGGCAG
GGTTTTCTCGCCAGAGCAGGAGCAGAGCGTCCTGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACACCACGCCGGCAC
CGGCCTTCTTTTTCCCG---GC------GAGCAAGGAGGCGTGCTCGGCGTGCGGGATGGACGGGTGCCTCGGGTGCGAG
TTCTTCGGCGCGGAGGCCACCGGCGCG--------AT-------CGCGGCATCGGACGCGCCGAGA--------------
----GCGGCGACCGCTGGCGGGCCGCAGAGGAGGCGGAGGAACAAGAAGAACCAGTACCGTGGCGTCAGGCAGCGGCCCT
GGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGACACGGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGTGCGCCAAGCTCAACTTCTCCTTCCCCGAGCAGCA
GCAGC------------TGGGTGGCAGCGGCAAT---GCCGCGGCCAAGTCCGACGCGTGCTCGCCGTCGCCTTCGCCAC
GCAGCGGGGA---------------------------CGAGGAGGAAACAGGTGACCTGCTCTGGGACGGCTTGGTGGAC
TTGATGAAGCTGGACGAGAGCGACCTCTGCTTGCTGCTCCCGGTCGACAACACCTTGGACATGCTTCACGCACCGGGACA
GAGACGATTGGATGCCTATT---AGTGCTAGACAAATG-----------TTAGACTAGTGTCACTGTGCAGCAGATCAAT
CAACACACATTGTACGACGGTCCTGGATCCTGGTTAGCACACGTCCTAGCTTCGGTTGTAAATATCCACCCGATCAATGG
AAAAGTTTTGTTTAACCATAGCCAAAGAGACCACACTGTAAAATTGCAACGTCTAAGACAAAGTTGGTCAAAGAACTAAA
CGGATTTTACTCACGAGCTCCGCCATTAACAAACGCTAACAATTGCGCATTGGTATGAGAATTGGGTGGTGTATGTGTAT
GATAATTTTACCGTAATCTAACCGCTAGCTTTCAGATTAGGGCACCTTCAACGGTAACCCGAAAATTTCTAGGA------
-TGCCCCATCCGCGCCGGCCTTTTTTGTTGATTGTTGGATTCATTTCTAGGATGGGACACCAAGATGGCAATGGTCCATG
CACTTGAAAGCGATTTCCTTTTGCAACATGATTCTCATTCTTTTGGTGCATCACTAAAAAAACGTATATTCGATATGACA
TATATATGCTTAGCAGCAGGGATAGATATACGAGTTAAATTATTATGCATGCAATTTCACTTGTTTACTAACCGCAAACA
CATATTTAACTTGTTTACCTTATGATGTTCAACTCATCTTGTGTTTTAACCCTAAGCTGTTTAGCAATTTTACTCCCTTA
TTATTGTACAATTATTTTTTTTTGCTAGGACTGGAAGTTGCTCTTTTTGTTTCTGGTTTTTTAAGTAACTTGGTTTTTAA
TGTTACACATTTGGCGTTAATTGTAATACAGGCATGTAAGTTGAATATTACATAGGAAAACCGTACCATCAAACCTTTTG
CCGATGAAAAAAATATAAAATGTACCACTCCCACATTTGATCGCACCGGCGGTGGTGCAACCAGAACGCGCCTATGTTGT
CACATGTTTACAACTGCAAGAAAAAGATTGCTCTTG-TTCAGTCACTTGTTCGGAGTTGCTATCTTGAGGCTCATCCATG
AGTTCAATGTGCCATTCAAAGAAGGTTGCTCTTGGGTA
>chr1B_476
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-------------------------------------------------ACCTCTGGCGCCACGTGAGACGAGCAAAACC
ACATGA---------C---------TTTGACCGTTTCAACAGACGGACTGACGGACCGACCTTACCCGTAATGATTCCAG
GGCCCCC-ATGGGCCATAGGTCCATCACATCCCGATCCC-ACTC------T------CTTCCACTAGCGTCACTGCTGGC
GAGTGGCGACCCCCTCGCGTCCACACGCAGACGCTGTCGGCTCGGCTCGGCTGTCCCTCCCCTGGAGGGCAATACCGGAA
TAAACAAA--------ACAAAAACCAACAAACAAA----------CCGAACGCGCACGTTTCGCACGCGTT-GATGAGCT
AGCCCCCATCCAAA-A-----AATGGTCGGTGCCCTCTGTTCTGCTTCTGCATGCGCCGCGTCCCCTGCGACGTCGACCG
GAGCATATATATACCTCTC-CCCTCCCCAGACTC----------TCACTTCAAACAACCATCACCACCGATCTA------
--CCT-------------------------------------CCAGCCATCACTCAGCTCAA-GGCACAATCAGG-----
------------------------------------------CACTCAGCGGCCGCAAGGGCACACATACGACAT-----
-ACCTTCAGCGTC----TCGGCGTCAATGGAGAAGA------GCCGGCAGTACATGATCCGCTTCGAGG-----------
----------ACCCG------AGCT------CCGCGGCCGCGG------------AGCCACAGGTGCCGTTCGCCGGCAA
GGTTTTCTCGCCGGAGCAGGAGCAGAGCGTCATGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACACCACGCCGGCGC
CGGAGTTCTTCTTCCCG---GC------GAGCAAGCAGGCGTGCTCGGCGTGCGGGATGGACGGATGCCTCGGGTGCGGG
TTCTTCAGCGCGGAGGCCGGGCGCGCG--------AT-------AAAGGCATTGGACGCGCCGAGA---------GCGCC
GGCCGCGGCGACGGCTGGCGGGCCGCAGAGGCGGCGGAGGAACAAGAAGAACCAGTACCGCGGCGTCAGGCAGCGGCCCT
GGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGAGACGGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCTCCTTCCCCGAGCAGCA
GCAGCAGCAGCAGCAGCTAGGCGGCAGCGGCAATGCCGCCCCGGCCAAGTCAGACGCGTGCTCGCCGTCGCCTTCGCCCC
GCAGTGCGGA---------------------------CGAGGGGGAAACAGGGGACCTGCTCTGGGACGGCTTTGTGGAC
TTGATGAAGCTGGACGAGAGCGAGCTCTGCTTACTGCTCCCGGTCGACAACAC---------------------------
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>chr1A_476
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---------------------------------------------------------------------------AGCCG
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-------------------------------------------------ACTTC-GACGCCACGTGAGGCGAGCAAAACC
ACATGA---------CAATCATCCATTTGACCCTTTCGACGGACGGACTGACGGACCGACCTTATCCGTAACGATTCCAG
G--CCCTGATGGGCCATGGGTCCATCACATCCCGATCCC-ACTC------TCTCCTCCTTCCACTAGCGTCACTGCTGGC
GAT-------CCCATCGCGTCCACACGCTGAGGCTGTCGGCTCGGCTCGGCTGTCCCTCGTCTGGAGGGCAATACCGGAA
TAAACAAATAAACAAAAC------CAACAAACAAACCCAAGGCCCCCCAACGCGCACGTTTCGCACGCGTT-GATGAGCT
TTCCCCCATCCAAAGA-----AATGGTCGGTGCCCTCTGTTTTGCATGCGCCTGCGCCGCGTCCCCTGCGACGTCGACCG
GAGCATATATATACCTCTC-C---CCCCGGACTC----------CCACTTCAAACAACCATCACCTTCAAGCTTAGCTCC
AGCCT-------------------------------------CCAGCCATCACTCAGCTCAA-GGCACAATCAGG-----
------------------------------------------CACTCATCGGCAGCAAGAACACACA-------------
GACCTTCAGCGTC----TCGGCGTCAATGGAGGCGA------GCCGGCAGTACATGATCCGCTTCGACGGCCACTTCGAG
------GAGGGCCCG------AGCT------CCGCGGCCGCCG------------AGCCACCGCAGCCGTTCGCCGGCAG
GGCTTTCTCGCCGGAGCAGGAGCAGAGCGTCATGGTCGCCGCGCTGCTGCACGTCGTCTCCGGGTACGCCACGCCGGCGC
CGGACCTCTTCTTCCCG---GC------GGGCAAGGAGGCGTGCACGGCGTGCGGGGTGGACGGGTGCCTCGGCTGCGAG
TTCTTCGGCGCCGAGGCCGGGCGCGCG--------GT-------CGCGGCATCGGACGCGCCGAGA--------------
----GCGGCGACCGCTGGCGGGCCGCAGAGGAGGCGGAGGAACAAGAAGAGCCAGTACCGCGGCGTCAGGCAGCGGCCGT
GGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCTCCTTCCCCGAGCAGCA
TCTCCGCGA------------CGACAGCGGCAAT---GCCGCGGCCAAGTCAGACGCGTGCTCTCCGTCGCCTTCGCCCC
GCAGCGCGGA---------------------------GGAGGAGGAAACAGGGGACCTGCTCTGGGACGGCCTGGTGGAC
TTGATGAAGCTGGACGAGAGCGACCTCTGCTTACTGCTCCCGGTCGACAACACTTTGGA---------------------
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>chr1D_806
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------------------------------------CTG------TTCTGCATGCGCCGCGTCCCCTGCGACGTCGACCG
GAGCGTATATATT--TCTC-C---CCCGCCTCACTTGTTCCCCATCACTTCAAACAAC----------------------
--------------------------------------ACCCACGGCCATCACACAGCTCAA-GTGGAGCTCCCACTTCA
GAGTTCAGACAACACCCACAGTCAGCTCTCAGCCCCTCAGCTCAATCAACGGCAGCAGGAACACACACGCGG----AGAT
GACCTTCGGCTTA----TCGCCGACACTGGATGCGA------GCCAGGAGTACATGATTCGGTTCGACGGCCACTTCGAG
TTCGAGGA---CCCGTCGACCGT---------------CGAGC------------CGCCGCCGCCGCCGTTCGCGGCCAG
GGCGATCTCGTCCGAGCAGGAGCATAGCGCCATGGTCGCCGCGCTGCTGCACGTCATCTCAGGGTACGCCACGCCGGTGC
CGGACTTCTTCTTCCCG---GC------GAGCAAGGAGGTGTGCCCGGCGTGCAGGATGGATGCGTGCCTCGGGTGCGAG
TTCATCGGCGCGGAGGCCAGGCCGCCGGCGGCGGCTGCATTGGACGCACCGAA---------------------------
------GGCGGCGGCGGGCGGGCCGCAGAGGAGGCGGAGGAACAAAAAGACCCAATACCGCGGCATCAGGCAGCGGCCAT
GGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCATTCCCCGAGCAGCA
GCAGCAGCAGC------TGGGCGGCAGCGGCAAT---GCCACGGCCAAGTCCGACACGTGCTCGCCCTCGCCCTCGCCAC
GCAGCCCGGA---------------------------CGGGGAGGAAACAGAGGAACAGCTCTGGGATGGCTTGCAGGAC
TTGATGAAGCTAGACGAGAGCGAGCTTTGCTTACTGTTCCCGGT------------------------------------
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>chr1D_1001
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------------------------------------------------------------------------------AT
GACCTTCAGCGTC----TCGGCGGCGATGGAGGGGG------GCCACGAGTACATGATCCGCTTCGACGGCCACTTCGAC
------GA---CCCGTCGCCCAGCA------CTGCCACCGCCGAGCCGCCGCCAGCGCCGCCGCAGCCGTTCGCGGGCAG
GGCGATCTCGCCGGAGCAGGAGCACAGCGCCATGGTCGCCGCGCTGCTGCACGTCATCTCCGGGTACACCACGCCGCCGC
CGGACTTCTTCCCGGCGGCCGC------GAGCAAGGAGGTGTGCCCGGCGTGCAGGGTGGACGGCTGCCTCGGCTGCGAG
TTCTTCGGAGCGGAGGCAGGG--ACAGGGCCGGTCGC-------GGCGGCATTGGACGCGCCGAAGGTGACT--------
----GCGGCGACGGCGGGCGGGCCGCAGAGGCGGCGAAGGAACAAGAAGAACAAGTACCGGGGCGTCAGGCAGCGCCCGT
GGGGCAAGTGGGCAGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCCGCCATCGAGTTCCGCGGCCCGCGCGCCAAGCTCAATTTCCCCTTCCCCGAGCAGCA
GCAGCAGCTG------------GGCGACGGGAATGCCGCCGCGGCCAAGTCCGGCACGTGCTCGCCCTCGCC--------
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>chr1B_1001
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------------------------------------------------------------------------------AT
GACCTTCAGCGTC----TCGGCGGCGATGGAGGGGGGCCACGGCCACGAGTACATGATCCGCTTCGACGGCCACTTGGAG
------GA---CCCGTCGCCCAGCA------CCGCCACCGCCGAGCCGCCGCCACC------GCCGCCGTTCGCGGGCAG
GGCGATCTCGCCGGAGCAGGAGCACGGCGCCATGGTCGCCGCGCTGCTGCACGTCATCTCCGGGTACACCACGCCGCCGC
CGGACTTCTTCCCGGCGGCCGC------GAGCAAGGAGGTGTGCCCGGTGTGCAGGGTCGACGGCTGCCTCGGCTGCGAG
TTCTTCGGCGCGGCCG--AGGCCACCGGGGCGACCGC-------GGCGGCATTGGACGCGCCGAAA---------GCG--
----GCGGTGACTGCGGGCGGGCCGCAGAGGCGGCGGCGGAACAAGAAGAACAAGTACCGGGGCGTCAGGCAGCGGCCGT
GGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGACGCCGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCCTTCCCCGAGCAGCA
GCAGCAGCAGC------TGGGCGA---CGGCAATGCCGCCGCGGCCAAGTCCGGCACGTGCTCGCCCTCGCC--------
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>chr1A_1023
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------------------------CAATGGATGCGA------GACAGGGGTACATGATTCGGTTCGACGGCCACTTCGAG
TTCGAGGA---CCCGTCGACCGC---------------CGAGC------------CGCCGCCGCCTCCGTTCGCGGCCAG
GGCGATCTCGTCTGAGCAGGAGCATACCGCCATGGTCGCCGCGCTGCTGCACGTCATCTCAGGGTACACCACGCCGGTGC
CGGACTTCTTCTTCCCG---GC------GAGCAAGGAGGTGTGCACGGCGTGCGGGATGGATGGGTGCCTCGGGTGCGAG
TTCTTCGGCGCGGGGGCCAGGCCGGCG--------AT-------CGCACCGAA---------------------------
------GGCGACGGTGGGCGGGCCGCAGAGGAGGCGGAGAAACAAAAAGACCCAGTACCGCGGCATCAGGCAGCGACCGT
GGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCCTTCCCCGAGCAGCA
GCAGCAGCAGCAGC---TGGGCGGCAGCGGCAAT---GCCGCGGCCAAGTCAGACACGCGCTCGCCCTCGCCGTCGCCCA
GCAGCGCGGA---------------------------CGGGGAGGAAACAGAGGAACGGCTCTGGGATGGCTTGCATGAC
TTGATGAAGCTAGACAAGAGCGAGCTCTGCTTACT---------------------------------------------
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>chr1A_1040
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-----------------------------------------------GAGTACATGATCCGCTTCCACAGCCACTTCGAC
------GA---CCCGTCGCCGAGCA------CCGCCACCGCCGAGCCGCCGCC---------------GTTTGCCGGAAG
GGCGATCTCGCCGGAGCAGGAGCACGGCGCCATGGTCGCCGCGCTGCTGCACGTCATCTCCGGGTACACCACGCCGCCGC
CGGACTTCTTCTTCCCG---GCCGCCGCGAGCAAGGAGGTGTGCCCGGTGTGCAGGGTCGACGGCTGCCTCGGCTGCGAG
TTCTTCGGCGCGGCGG--AGGCCACCGGGGCGACCGC-------AGCGGCATTGGACGCGCCGAAGTCGGCACCGGCG--
----GCGGTGACCGCGGGCGGGCCGCAGCGGAGGCGGAGGAATAAGAAGAACAAGTACCGGGGCGTCAGGCAGCGGCCGT
GGGGCAAGTGGGCGGCGGAGATCCGCGACCCGCGCCGCGCCGTGCGGGTGTGGCTCGGGACCTTCGACACCGCCGAGGAC
GCCGCCAGGGCCTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCCTTCCCCGAGCAGCA
GCAGCAGCAGCAGC---TGGGCGA---TGGCAATGCCGCCCCGGCCAAGTCCGACACGTGCTCGCCCTCGCCC------A
GCAGCGCGGAAGTCGATGTCCGGGTCCCGCGGAACGGCGGGCAGGAAACAGGGGATCAGCTCTGGGACGGCCTGCAGGAC
CTGATGAAGCTAGACGAGAGCGAGCTCTGGTT------------------------------------------------
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>SNPs
SSSSS-SSSSSSS-SS-SSSSS-SSS--S--S---SSSS-S-S-SS-SS--S-SS-S-S---SSSSS-S---SS-SSSSS
SSSSSSSSSSSSSSSS-SS-SS-S-SSSSS-SSSS-S--SSSSS-SS-SSSSSSSSS-SSSS-SSS-SS-SSSS-SSSSS
SS-SSS---S-SSS--S--SSSSSS-S-SS-S--SSSSSSSSS-S-SSSS--SSSSS-SSSSSS--S---SSSSS-SSSS
-S-SSSSS---SSSSSSS--SSSSSS--SSSSSS-SSSSSSSSSSSS--S-SSS--SS-SSS-SSSSS--SS-SSSS-S-
SSSSS-SSS-SSS-SSSSSSS-SS--S-S-SSSSSS-SSSSS-SSS--SS--SS-SSSSSS-SSSSSSSS-S-SSS-SS-
-SSS-S--SS-SSSSS--SSSSSSSS--SSSSS-SSSSSSSSS-SSSSS-SS-SS-SSSS-SSSSSS---SSSS------
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-------------------------------------------------------------------------S------
-S------------S----------------S------------------------------------------------
-SS---------------------------------------------------------S-------------------
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--S-----------------------------------------------------------------------------
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-------------SS-------------S-S-------------------------------------S----S-SSSS-
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----S---S-----------------------------
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----------S-----------------------------------------S--------S------S-----------
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----------------S-----------------------------S---------------------------------
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-----------------------S--------------------------------------------------------
-----------------------------------------------S--------------------------------
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-----------S--------SSS---------------SSSSSSSSSSS--------S-----S----------------
-------------------S----S---------------S-------S---------------S---------------
-------S---------S--------------------------------S-----S------------S----------
--------------------S--SSS----S-------------------------------S------S---------S
SS----------S---------S-S--S--SS--------S---S------S---------S------S-----SSSSSS
S------S-S----------------------SS-------------------------------------S--S-----
-----------------------------S----------------------------------------S---------
---------S-------SS---------S-S-----------------------------------------------S-
---------------S-------------------------------S-------S-S-------S--------------
-S--------------S-------------SS-S---------------------SSS---S------------------
-------------S----------------SS---------------------------------S---S---S------
--S---S-----S-SSS-------------------S-----S--SS--S-------SS-S--S-SS-------------
---S--------S---S-----S-S-----S-S-SSS---S-----------S---------------S-----------
----------------SS--------------------
>forward_6427
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-------GACGATCTCTGCAGAGCTCC-----------------------------------------------------
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>reverse_8386
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-----------------------------------------------------------------TTGCGCCTATGTTGT
CACCT---------------------------------------------------------------------------
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