Multiple sequence alignment - TraesCS1D01G359200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G359200 chr1D 100.000 3522 0 0 1 3522 442688394 442684873 0.000000e+00 6505.0
1 TraesCS1D01G359200 chr1D 82.383 193 30 4 1091 1281 443379041 443378851 7.820000e-37 165.0
2 TraesCS1D01G359200 chr1B 88.796 2383 180 34 257 2590 601410013 601412357 0.000000e+00 2841.0
3 TraesCS1D01G359200 chr1B 90.175 285 20 5 2710 2993 601426050 601426327 7.180000e-97 364.0
4 TraesCS1D01G359200 chr1B 87.025 316 31 6 3077 3392 38229051 38228746 7.240000e-92 348.0
5 TraesCS1D01G359200 chr1B 80.729 192 35 2 1091 1281 603086852 603086662 7.880000e-32 148.0
6 TraesCS1D01G359200 chr1A 92.179 1790 85 18 690 2438 535887143 535888918 0.000000e+00 2479.0
7 TraesCS1D01G359200 chr1A 96.844 602 17 2 2445 3046 535889088 535889687 0.000000e+00 1005.0
8 TraesCS1D01G359200 chr1A 92.520 254 19 0 3269 3522 535890058 535890311 7.180000e-97 364.0
9 TraesCS1D01G359200 chr1A 81.043 211 37 3 1073 1281 535485521 535485730 7.820000e-37 165.0
10 TraesCS1D01G359200 chr6A 88.973 263 27 2 3261 3522 501788674 501788413 1.220000e-84 324.0
11 TraesCS1D01G359200 chr6B 88.168 262 30 1 3261 3522 542221889 542221629 9.490000e-81 311.0
12 TraesCS1D01G359200 chr6D 88.166 169 20 0 3354 3522 360677612 360677444 5.960000e-48 202.0
13 TraesCS1D01G359200 chr6D 90.345 145 12 2 3101 3245 360680093 360679951 4.640000e-44 189.0
14 TraesCS1D01G359200 chr6D 91.358 81 6 1 3261 3341 360679027 360678948 3.720000e-20 110.0
15 TraesCS1D01G359200 chr5D 95.690 116 5 0 3090 3205 491795416 491795301 1.670000e-43 187.0
16 TraesCS1D01G359200 chr4A 79.832 119 22 2 1124 1241 117254725 117254608 6.260000e-13 86.1
17 TraesCS1D01G359200 chr4D 81.633 98 16 2 1145 1241 348413281 348413377 2.910000e-11 80.5
18 TraesCS1D01G359200 chr4B 78.151 119 24 2 1124 1241 428484242 428484359 1.360000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G359200 chr1D 442684873 442688394 3521 True 6505.000000 6505 100.000000 1 3522 1 chr1D.!!$R1 3521
1 TraesCS1D01G359200 chr1B 601410013 601412357 2344 False 2841.000000 2841 88.796000 257 2590 1 chr1B.!!$F1 2333
2 TraesCS1D01G359200 chr1A 535887143 535890311 3168 False 1282.666667 2479 93.847667 690 3522 3 chr1A.!!$F2 2832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 286 0.033228 CGATGCCCTAGCTTCCTCTG 59.967 60.0 0.0 0.0 39.42 3.35 F
1459 1507 0.179187 CTTCTCGTGCATCTCGTCGT 60.179 55.0 0.0 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 1793 0.466372 TCCAGCTCGACTCATCCGAT 60.466 55.0 0.0 0.0 35.35 4.18 R
3369 3764 0.038166 TTGGGAGATGTGGAAGCACC 59.962 55.0 0.0 0.0 39.54 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.212195 AGAACCGAGGGGAAAATAGGC 59.788 52.381 0.00 0.00 36.97 3.93
21 22 0.257905 AACCGAGGGGAAAATAGGCC 59.742 55.000 0.00 0.00 36.97 5.19
22 23 0.917333 ACCGAGGGGAAAATAGGCCA 60.917 55.000 5.01 0.00 36.97 5.36
23 24 0.465642 CCGAGGGGAAAATAGGCCAC 60.466 60.000 5.01 0.00 34.06 5.01
24 25 0.254747 CGAGGGGAAAATAGGCCACA 59.745 55.000 5.01 0.00 0.00 4.17
25 26 1.133792 CGAGGGGAAAATAGGCCACAT 60.134 52.381 5.01 0.00 0.00 3.21
26 27 2.310538 GAGGGGAAAATAGGCCACATG 58.689 52.381 5.01 0.00 0.00 3.21
27 28 1.929494 AGGGGAAAATAGGCCACATGA 59.071 47.619 5.01 0.00 0.00 3.07
28 29 2.314549 AGGGGAAAATAGGCCACATGAA 59.685 45.455 5.01 0.00 0.00 2.57
29 30 3.103742 GGGGAAAATAGGCCACATGAAA 58.896 45.455 5.01 0.00 0.00 2.69
30 31 3.132824 GGGGAAAATAGGCCACATGAAAG 59.867 47.826 5.01 0.00 0.00 2.62
31 32 3.769300 GGGAAAATAGGCCACATGAAAGT 59.231 43.478 5.01 0.00 0.00 2.66
32 33 4.381932 GGGAAAATAGGCCACATGAAAGTG 60.382 45.833 5.01 0.00 39.21 3.16
43 44 5.113502 CACATGAAAGTGGTTTTCTCTCC 57.886 43.478 0.00 0.00 44.49 3.71
44 45 4.823989 CACATGAAAGTGGTTTTCTCTCCT 59.176 41.667 0.00 0.00 44.49 3.69
45 46 5.300286 CACATGAAAGTGGTTTTCTCTCCTT 59.700 40.000 0.00 0.00 44.49 3.36
46 47 6.486657 CACATGAAAGTGGTTTTCTCTCCTTA 59.513 38.462 0.00 0.00 44.49 2.69
47 48 7.175641 CACATGAAAGTGGTTTTCTCTCCTTAT 59.824 37.037 0.00 0.00 44.49 1.73
48 49 7.725844 ACATGAAAGTGGTTTTCTCTCCTTATT 59.274 33.333 0.00 0.00 44.49 1.40
49 50 8.579863 CATGAAAGTGGTTTTCTCTCCTTATTT 58.420 33.333 0.00 0.00 44.49 1.40
50 51 7.940850 TGAAAGTGGTTTTCTCTCCTTATTTG 58.059 34.615 1.88 0.00 44.49 2.32
51 52 5.966742 AGTGGTTTTCTCTCCTTATTTGC 57.033 39.130 0.00 0.00 0.00 3.68
52 53 4.767409 AGTGGTTTTCTCTCCTTATTTGCC 59.233 41.667 0.00 0.00 0.00 4.52
53 54 4.522789 GTGGTTTTCTCTCCTTATTTGCCA 59.477 41.667 0.00 0.00 0.00 4.92
54 55 4.522789 TGGTTTTCTCTCCTTATTTGCCAC 59.477 41.667 0.00 0.00 0.00 5.01
55 56 4.082190 GGTTTTCTCTCCTTATTTGCCACC 60.082 45.833 0.00 0.00 0.00 4.61
56 57 4.657814 TTTCTCTCCTTATTTGCCACCT 57.342 40.909 0.00 0.00 0.00 4.00
57 58 5.772393 TTTCTCTCCTTATTTGCCACCTA 57.228 39.130 0.00 0.00 0.00 3.08
58 59 5.359194 TTCTCTCCTTATTTGCCACCTAG 57.641 43.478 0.00 0.00 0.00 3.02
59 60 3.711704 TCTCTCCTTATTTGCCACCTAGG 59.288 47.826 7.41 7.41 41.84 3.02
60 61 3.711704 CTCTCCTTATTTGCCACCTAGGA 59.288 47.826 17.98 0.00 41.22 2.94
61 62 3.454812 TCTCCTTATTTGCCACCTAGGAC 59.545 47.826 17.98 4.96 41.22 3.85
62 63 3.186283 TCCTTATTTGCCACCTAGGACA 58.814 45.455 17.98 7.83 41.22 4.02
63 64 3.199946 TCCTTATTTGCCACCTAGGACAG 59.800 47.826 17.98 4.34 41.22 3.51
64 65 2.710096 TATTTGCCACCTAGGACAGC 57.290 50.000 17.98 15.09 41.22 4.40
65 66 0.034089 ATTTGCCACCTAGGACAGCC 60.034 55.000 17.98 0.00 41.22 4.85
66 67 2.463589 TTTGCCACCTAGGACAGCCG 62.464 60.000 17.98 0.00 41.22 5.52
67 68 3.391382 GCCACCTAGGACAGCCGT 61.391 66.667 17.98 0.00 41.22 5.68
68 69 2.955881 GCCACCTAGGACAGCCGTT 61.956 63.158 17.98 0.00 41.22 4.44
69 70 1.677552 CCACCTAGGACAGCCGTTT 59.322 57.895 17.98 0.00 41.22 3.60
70 71 0.391263 CCACCTAGGACAGCCGTTTC 60.391 60.000 17.98 0.00 41.22 2.78
71 72 0.320374 CACCTAGGACAGCCGTTTCA 59.680 55.000 17.98 0.00 39.96 2.69
72 73 1.066143 CACCTAGGACAGCCGTTTCAT 60.066 52.381 17.98 0.00 39.96 2.57
73 74 1.207329 ACCTAGGACAGCCGTTTCATC 59.793 52.381 17.98 0.00 39.96 2.92
74 75 1.207089 CCTAGGACAGCCGTTTCATCA 59.793 52.381 1.05 0.00 39.96 3.07
75 76 2.354704 CCTAGGACAGCCGTTTCATCAA 60.355 50.000 1.05 0.00 39.96 2.57
76 77 2.270352 AGGACAGCCGTTTCATCAAA 57.730 45.000 0.00 0.00 39.96 2.69
77 78 1.880027 AGGACAGCCGTTTCATCAAAC 59.120 47.619 0.00 0.00 39.96 2.93
78 79 1.606668 GGACAGCCGTTTCATCAAACA 59.393 47.619 0.00 0.00 41.94 2.83
79 80 2.604614 GGACAGCCGTTTCATCAAACAC 60.605 50.000 0.00 0.00 41.94 3.32
80 81 1.002900 ACAGCCGTTTCATCAAACACG 60.003 47.619 0.00 0.00 41.94 4.49
81 82 0.040425 AGCCGTTTCATCAAACACGC 60.040 50.000 0.00 0.00 41.94 5.34
82 83 1.001745 GCCGTTTCATCAAACACGCC 61.002 55.000 0.00 0.00 41.94 5.68
83 84 0.386731 CCGTTTCATCAAACACGCCC 60.387 55.000 0.00 0.00 41.94 6.13
84 85 0.309302 CGTTTCATCAAACACGCCCA 59.691 50.000 0.00 0.00 41.94 5.36
85 86 1.068610 CGTTTCATCAAACACGCCCAT 60.069 47.619 0.00 0.00 41.94 4.00
86 87 2.595386 GTTTCATCAAACACGCCCATC 58.405 47.619 0.00 0.00 41.53 3.51
87 88 1.173043 TTCATCAAACACGCCCATCC 58.827 50.000 0.00 0.00 0.00 3.51
88 89 0.679640 TCATCAAACACGCCCATCCC 60.680 55.000 0.00 0.00 0.00 3.85
89 90 0.964860 CATCAAACACGCCCATCCCA 60.965 55.000 0.00 0.00 0.00 4.37
90 91 0.965363 ATCAAACACGCCCATCCCAC 60.965 55.000 0.00 0.00 0.00 4.61
91 92 2.282887 AAACACGCCCATCCCACC 60.283 61.111 0.00 0.00 0.00 4.61
92 93 3.879180 AAACACGCCCATCCCACCC 62.879 63.158 0.00 0.00 0.00 4.61
94 95 4.489771 CACGCCCATCCCACCCTC 62.490 72.222 0.00 0.00 0.00 4.30
97 98 4.176752 GCCCATCCCACCCTCGAC 62.177 72.222 0.00 0.00 0.00 4.20
98 99 2.687200 CCCATCCCACCCTCGACA 60.687 66.667 0.00 0.00 0.00 4.35
99 100 2.297895 CCCATCCCACCCTCGACAA 61.298 63.158 0.00 0.00 0.00 3.18
100 101 1.078426 CCATCCCACCCTCGACAAC 60.078 63.158 0.00 0.00 0.00 3.32
101 102 1.078426 CATCCCACCCTCGACAACC 60.078 63.158 0.00 0.00 0.00 3.77
102 103 1.229529 ATCCCACCCTCGACAACCT 60.230 57.895 0.00 0.00 0.00 3.50
103 104 0.840722 ATCCCACCCTCGACAACCTT 60.841 55.000 0.00 0.00 0.00 3.50
104 105 1.003718 CCCACCCTCGACAACCTTC 60.004 63.158 0.00 0.00 0.00 3.46
105 106 1.752198 CCACCCTCGACAACCTTCA 59.248 57.895 0.00 0.00 0.00 3.02
106 107 0.324943 CCACCCTCGACAACCTTCAT 59.675 55.000 0.00 0.00 0.00 2.57
107 108 1.676014 CCACCCTCGACAACCTTCATC 60.676 57.143 0.00 0.00 0.00 2.92
108 109 0.613777 ACCCTCGACAACCTTCATCC 59.386 55.000 0.00 0.00 0.00 3.51
109 110 0.905357 CCCTCGACAACCTTCATCCT 59.095 55.000 0.00 0.00 0.00 3.24
110 111 1.134670 CCCTCGACAACCTTCATCCTC 60.135 57.143 0.00 0.00 0.00 3.71
111 112 1.134670 CCTCGACAACCTTCATCCTCC 60.135 57.143 0.00 0.00 0.00 4.30
112 113 0.902531 TCGACAACCTTCATCCTCCC 59.097 55.000 0.00 0.00 0.00 4.30
113 114 0.107654 CGACAACCTTCATCCTCCCC 60.108 60.000 0.00 0.00 0.00 4.81
114 115 1.290134 GACAACCTTCATCCTCCCCT 58.710 55.000 0.00 0.00 0.00 4.79
115 116 0.995024 ACAACCTTCATCCTCCCCTG 59.005 55.000 0.00 0.00 0.00 4.45
116 117 0.394899 CAACCTTCATCCTCCCCTGC 60.395 60.000 0.00 0.00 0.00 4.85
117 118 0.551131 AACCTTCATCCTCCCCTGCT 60.551 55.000 0.00 0.00 0.00 4.24
118 119 1.277580 ACCTTCATCCTCCCCTGCTG 61.278 60.000 0.00 0.00 0.00 4.41
119 120 1.153005 CTTCATCCTCCCCTGCTGC 60.153 63.158 0.00 0.00 0.00 5.25
120 121 2.621517 CTTCATCCTCCCCTGCTGCC 62.622 65.000 0.00 0.00 0.00 4.85
121 122 3.414193 CATCCTCCCCTGCTGCCA 61.414 66.667 0.00 0.00 0.00 4.92
122 123 3.415087 ATCCTCCCCTGCTGCCAC 61.415 66.667 0.00 0.00 0.00 5.01
123 124 4.980592 TCCTCCCCTGCTGCCACA 62.981 66.667 0.00 0.00 0.00 4.17
124 125 4.729918 CCTCCCCTGCTGCCACAC 62.730 72.222 0.00 0.00 0.00 3.82
125 126 4.729918 CTCCCCTGCTGCCACACC 62.730 72.222 0.00 0.00 0.00 4.16
129 130 4.584518 CCTGCTGCCACACCACCA 62.585 66.667 0.00 0.00 0.00 4.17
130 131 3.289834 CTGCTGCCACACCACCAC 61.290 66.667 0.00 0.00 0.00 4.16
131 132 4.892965 TGCTGCCACACCACCACC 62.893 66.667 0.00 0.00 0.00 4.61
133 134 4.974721 CTGCCACACCACCACCCC 62.975 72.222 0.00 0.00 0.00 4.95
136 137 4.636435 CCACACCACCACCCCGAC 62.636 72.222 0.00 0.00 0.00 4.79
137 138 3.867783 CACACCACCACCCCGACA 61.868 66.667 0.00 0.00 0.00 4.35
138 139 3.091190 ACACCACCACCCCGACAA 61.091 61.111 0.00 0.00 0.00 3.18
139 140 2.593436 CACCACCACCCCGACAAC 60.593 66.667 0.00 0.00 0.00 3.32
140 141 3.881104 ACCACCACCCCGACAACC 61.881 66.667 0.00 0.00 0.00 3.77
141 142 3.879885 CCACCACCCCGACAACCA 61.880 66.667 0.00 0.00 0.00 3.67
142 143 2.593436 CACCACCCCGACAACCAC 60.593 66.667 0.00 0.00 0.00 4.16
143 144 2.770904 ACCACCCCGACAACCACT 60.771 61.111 0.00 0.00 0.00 4.00
144 145 1.459921 ACCACCCCGACAACCACTA 60.460 57.895 0.00 0.00 0.00 2.74
145 146 1.295423 CCACCCCGACAACCACTAG 59.705 63.158 0.00 0.00 0.00 2.57
146 147 1.375523 CACCCCGACAACCACTAGC 60.376 63.158 0.00 0.00 0.00 3.42
147 148 2.125673 CCCCGACAACCACTAGCG 60.126 66.667 0.00 0.00 0.00 4.26
148 149 2.125673 CCCGACAACCACTAGCGG 60.126 66.667 0.00 0.00 41.53 5.52
149 150 2.654877 CCGACAACCACTAGCGGT 59.345 61.111 0.00 0.00 42.71 5.68
150 151 1.736645 CCGACAACCACTAGCGGTG 60.737 63.158 2.46 0.00 44.96 4.94
151 152 2.380410 CGACAACCACTAGCGGTGC 61.380 63.158 2.46 0.00 44.08 5.01
152 153 2.032071 ACAACCACTAGCGGTGCC 59.968 61.111 2.46 0.00 44.08 5.01
153 154 2.746277 CAACCACTAGCGGTGCCC 60.746 66.667 2.46 0.00 44.08 5.36
154 155 4.029809 AACCACTAGCGGTGCCCC 62.030 66.667 2.46 0.00 44.08 5.80
156 157 4.162690 CCACTAGCGGTGCCCCTC 62.163 72.222 0.00 0.00 44.08 4.30
157 158 4.162690 CACTAGCGGTGCCCCTCC 62.163 72.222 0.00 0.00 39.22 4.30
165 166 3.570212 GTGCCCCTCCCCGCATAT 61.570 66.667 0.00 0.00 37.33 1.78
166 167 3.569210 TGCCCCTCCCCGCATATG 61.569 66.667 0.00 0.00 0.00 1.78
168 169 4.351054 CCCCTCCCCGCATATGCC 62.351 72.222 21.77 4.68 37.91 4.40
169 170 3.569210 CCCTCCCCGCATATGCCA 61.569 66.667 21.77 2.86 37.91 4.92
170 171 2.281761 CCTCCCCGCATATGCCAC 60.282 66.667 21.77 0.00 37.91 5.01
171 172 2.510411 CTCCCCGCATATGCCACA 59.490 61.111 21.77 2.85 37.91 4.17
172 173 1.893808 CTCCCCGCATATGCCACAC 60.894 63.158 21.77 0.00 37.91 3.82
173 174 2.906897 CCCCGCATATGCCACACC 60.907 66.667 21.77 0.00 37.91 4.16
174 175 2.906897 CCCGCATATGCCACACCC 60.907 66.667 21.77 0.00 37.91 4.61
175 176 2.124362 CCGCATATGCCACACCCA 60.124 61.111 21.77 0.00 37.91 4.51
176 177 2.480610 CCGCATATGCCACACCCAC 61.481 63.158 21.77 0.00 37.91 4.61
177 178 2.480610 CGCATATGCCACACCCACC 61.481 63.158 21.77 0.00 37.91 4.61
178 179 1.076777 GCATATGCCACACCCACCT 60.077 57.895 17.26 0.00 34.31 4.00
179 180 1.103398 GCATATGCCACACCCACCTC 61.103 60.000 17.26 0.00 34.31 3.85
180 181 0.466189 CATATGCCACACCCACCTCC 60.466 60.000 0.00 0.00 0.00 4.30
181 182 0.918799 ATATGCCACACCCACCTCCA 60.919 55.000 0.00 0.00 0.00 3.86
182 183 1.136961 TATGCCACACCCACCTCCAA 61.137 55.000 0.00 0.00 0.00 3.53
183 184 2.597510 GCCACACCCACCTCCAAC 60.598 66.667 0.00 0.00 0.00 3.77
184 185 2.115266 CCACACCCACCTCCAACC 59.885 66.667 0.00 0.00 0.00 3.77
185 186 2.762554 CCACACCCACCTCCAACCA 61.763 63.158 0.00 0.00 0.00 3.67
186 187 1.528309 CACACCCACCTCCAACCAC 60.528 63.158 0.00 0.00 0.00 4.16
187 188 2.004120 ACACCCACCTCCAACCACA 61.004 57.895 0.00 0.00 0.00 4.17
188 189 1.360393 ACACCCACCTCCAACCACAT 61.360 55.000 0.00 0.00 0.00 3.21
189 190 0.895100 CACCCACCTCCAACCACATG 60.895 60.000 0.00 0.00 0.00 3.21
190 191 1.065410 ACCCACCTCCAACCACATGA 61.065 55.000 0.00 0.00 0.00 3.07
191 192 0.332632 CCCACCTCCAACCACATGAT 59.667 55.000 0.00 0.00 0.00 2.45
192 193 1.272648 CCCACCTCCAACCACATGATT 60.273 52.381 0.00 0.00 0.00 2.57
193 194 2.528564 CCACCTCCAACCACATGATTT 58.471 47.619 0.00 0.00 0.00 2.17
194 195 2.231964 CCACCTCCAACCACATGATTTG 59.768 50.000 0.00 0.00 0.00 2.32
195 196 2.231964 CACCTCCAACCACATGATTTGG 59.768 50.000 14.73 14.73 41.12 3.28
205 206 6.855763 ACCACATGATTTGGTTCATACATT 57.144 33.333 0.00 0.00 45.62 2.71
206 207 6.632909 ACCACATGATTTGGTTCATACATTG 58.367 36.000 0.00 0.00 45.62 2.82
207 208 5.521010 CCACATGATTTGGTTCATACATTGC 59.479 40.000 0.00 0.00 34.59 3.56
208 209 5.521010 CACATGATTTGGTTCATACATTGCC 59.479 40.000 0.00 0.00 34.59 4.52
209 210 4.368874 TGATTTGGTTCATACATTGCCG 57.631 40.909 0.00 0.00 0.00 5.69
210 211 2.645730 TTTGGTTCATACATTGCCGC 57.354 45.000 0.00 0.00 0.00 6.53
211 212 0.814457 TTGGTTCATACATTGCCGCC 59.186 50.000 0.00 0.00 0.00 6.13
212 213 1.034838 TGGTTCATACATTGCCGCCC 61.035 55.000 0.00 0.00 0.00 6.13
213 214 0.751643 GGTTCATACATTGCCGCCCT 60.752 55.000 0.00 0.00 0.00 5.19
214 215 1.102978 GTTCATACATTGCCGCCCTT 58.897 50.000 0.00 0.00 0.00 3.95
215 216 1.065551 GTTCATACATTGCCGCCCTTC 59.934 52.381 0.00 0.00 0.00 3.46
216 217 0.465460 TCATACATTGCCGCCCTTCC 60.465 55.000 0.00 0.00 0.00 3.46
217 218 0.751277 CATACATTGCCGCCCTTCCA 60.751 55.000 0.00 0.00 0.00 3.53
218 219 0.185901 ATACATTGCCGCCCTTCCAT 59.814 50.000 0.00 0.00 0.00 3.41
219 220 0.033601 TACATTGCCGCCCTTCCATT 60.034 50.000 0.00 0.00 0.00 3.16
220 221 1.142314 CATTGCCGCCCTTCCATTG 59.858 57.895 0.00 0.00 0.00 2.82
221 222 2.724273 ATTGCCGCCCTTCCATTGC 61.724 57.895 0.00 0.00 0.00 3.56
222 223 4.675161 TGCCGCCCTTCCATTGCA 62.675 61.111 0.00 0.00 0.00 4.08
223 224 3.830192 GCCGCCCTTCCATTGCAG 61.830 66.667 0.00 0.00 0.00 4.41
224 225 2.361610 CCGCCCTTCCATTGCAGT 60.362 61.111 0.00 0.00 0.00 4.40
225 226 2.703798 CCGCCCTTCCATTGCAGTG 61.704 63.158 1.49 1.49 0.00 3.66
226 227 2.575461 GCCCTTCCATTGCAGTGC 59.425 61.111 8.58 8.58 0.00 4.40
227 228 2.277591 GCCCTTCCATTGCAGTGCA 61.278 57.895 15.37 15.37 36.47 4.57
228 229 1.888018 CCCTTCCATTGCAGTGCAG 59.112 57.895 18.81 7.68 40.61 4.41
229 230 1.214589 CCTTCCATTGCAGTGCAGC 59.785 57.895 18.81 0.00 40.61 5.25
230 231 1.529152 CCTTCCATTGCAGTGCAGCA 61.529 55.000 18.81 4.71 40.61 4.41
231 232 0.109272 CTTCCATTGCAGTGCAGCAG 60.109 55.000 18.81 11.74 46.54 4.24
232 233 1.529152 TTCCATTGCAGTGCAGCAGG 61.529 55.000 18.81 19.77 46.54 4.85
233 234 2.126071 CATTGCAGTGCAGCAGGC 60.126 61.111 18.81 11.30 46.54 4.85
234 235 2.282958 ATTGCAGTGCAGCAGGCT 60.283 55.556 18.81 0.31 46.54 4.58
235 236 2.341101 ATTGCAGTGCAGCAGGCTC 61.341 57.895 18.81 0.00 46.54 4.70
278 279 4.271816 CGCGTCGATGCCCTAGCT 62.272 66.667 23.36 0.00 40.80 3.32
279 280 2.107141 GCGTCGATGCCCTAGCTT 59.893 61.111 19.11 0.00 40.80 3.74
280 281 1.951631 GCGTCGATGCCCTAGCTTC 60.952 63.158 19.11 0.00 40.80 3.86
285 286 0.033228 CGATGCCCTAGCTTCCTCTG 59.967 60.000 0.00 0.00 39.42 3.35
290 291 1.781786 CCCTAGCTTCCTCTGTGCTA 58.218 55.000 0.00 0.00 38.15 3.49
295 296 1.484240 AGCTTCCTCTGTGCTACATCC 59.516 52.381 0.00 0.00 35.05 3.51
296 297 1.804372 GCTTCCTCTGTGCTACATCCG 60.804 57.143 0.00 0.00 0.00 4.18
311 312 2.292267 CATCCGAAACCATCTTCCCTG 58.708 52.381 0.00 0.00 0.00 4.45
317 318 1.985622 AACCATCTTCCCTGGATCCA 58.014 50.000 15.27 15.27 37.22 3.41
321 322 1.493871 CATCTTCCCTGGATCCAAGCT 59.506 52.381 17.00 0.00 0.00 3.74
327 328 1.523258 CTGGATCCAAGCTCTGCCG 60.523 63.158 17.00 0.00 0.00 5.69
329 330 1.817099 GGATCCAAGCTCTGCCGTG 60.817 63.158 6.95 0.00 0.00 4.94
343 344 4.094684 CGTGTTCGGCCATCTCTC 57.905 61.111 2.24 0.00 0.00 3.20
353 354 2.435693 CCATCTCTCCCCCGTGGAC 61.436 68.421 0.00 0.00 38.61 4.02
357 358 4.753662 TCTCCCCCGTGGACGAGG 62.754 72.222 0.00 0.00 43.02 4.63
373 374 0.621862 GAGGTCCTTCTCCCCACCAT 60.622 60.000 0.00 0.00 0.00 3.55
374 375 0.916358 AGGTCCTTCTCCCCACCATG 60.916 60.000 0.00 0.00 0.00 3.66
378 379 1.450312 CTTCTCCCCACCATGCGAC 60.450 63.158 0.00 0.00 0.00 5.19
381 382 4.077184 TCCCCACCATGCGACGAC 62.077 66.667 0.00 0.00 0.00 4.34
387 388 2.126071 CCATGCGACGACGACCTT 60.126 61.111 12.29 0.00 42.66 3.50
391 392 1.022735 ATGCGACGACGACCTTAGAT 58.977 50.000 12.29 0.00 42.66 1.98
393 394 0.656785 GCGACGACGACCTTAGATCT 59.343 55.000 12.29 0.00 42.66 2.75
402 403 1.757699 GACCTTAGATCTGTTCGCCCT 59.242 52.381 5.18 0.00 0.00 5.19
404 405 2.093447 ACCTTAGATCTGTTCGCCCTTG 60.093 50.000 5.18 0.00 0.00 3.61
405 406 1.936547 CTTAGATCTGTTCGCCCTTGC 59.063 52.381 5.18 0.00 0.00 4.01
415 426 2.256461 GCCCTTGCGCTGTCTTTG 59.744 61.111 9.73 0.00 0.00 2.77
417 428 1.576421 CCCTTGCGCTGTCTTTGTC 59.424 57.895 9.73 0.00 0.00 3.18
422 433 1.954146 GCGCTGTCTTTGTCGTGGA 60.954 57.895 0.00 0.00 0.00 4.02
440 451 1.283321 GGACCTCCCATCTTTCTGCTT 59.717 52.381 0.00 0.00 34.14 3.91
442 453 1.707427 ACCTCCCATCTTTCTGCTTGT 59.293 47.619 0.00 0.00 0.00 3.16
444 455 2.490903 CCTCCCATCTTTCTGCTTGTTG 59.509 50.000 0.00 0.00 0.00 3.33
446 457 4.015084 CTCCCATCTTTCTGCTTGTTGAT 58.985 43.478 0.00 0.00 0.00 2.57
447 458 5.178096 TCCCATCTTTCTGCTTGTTGATA 57.822 39.130 0.00 0.00 0.00 2.15
448 459 5.759059 TCCCATCTTTCTGCTTGTTGATAT 58.241 37.500 0.00 0.00 0.00 1.63
450 461 5.591472 CCCATCTTTCTGCTTGTTGATATGA 59.409 40.000 0.00 0.00 0.00 2.15
451 462 6.459298 CCCATCTTTCTGCTTGTTGATATGAC 60.459 42.308 0.00 0.00 0.00 3.06
454 465 4.574674 TTCTGCTTGTTGATATGACCCT 57.425 40.909 0.00 0.00 0.00 4.34
455 466 3.877559 TCTGCTTGTTGATATGACCCTG 58.122 45.455 0.00 0.00 0.00 4.45
456 467 2.357009 CTGCTTGTTGATATGACCCTGC 59.643 50.000 0.00 0.00 0.00 4.85
457 468 1.331756 GCTTGTTGATATGACCCTGCG 59.668 52.381 0.00 0.00 0.00 5.18
458 469 2.632377 CTTGTTGATATGACCCTGCGT 58.368 47.619 0.00 0.00 0.00 5.24
459 470 2.022764 TGTTGATATGACCCTGCGTG 57.977 50.000 0.00 0.00 0.00 5.34
461 472 0.463654 TTGATATGACCCTGCGTGGC 60.464 55.000 0.00 0.00 0.00 5.01
462 473 1.337384 TGATATGACCCTGCGTGGCT 61.337 55.000 0.00 0.00 0.00 4.75
463 474 0.882042 GATATGACCCTGCGTGGCTG 60.882 60.000 0.00 0.00 0.00 4.85
464 475 1.337384 ATATGACCCTGCGTGGCTGA 61.337 55.000 0.00 0.00 0.00 4.26
481 492 0.928505 TGACCAAGCCATGATGGGAT 59.071 50.000 14.26 0.00 41.17 3.85
482 493 1.288633 TGACCAAGCCATGATGGGATT 59.711 47.619 14.26 0.00 41.17 3.01
487 498 2.829720 CAAGCCATGATGGGATTATGGG 59.170 50.000 14.26 0.00 44.25 4.00
497 508 0.538287 GGATTATGGGCTCCAGCACC 60.538 60.000 0.00 0.00 45.73 5.01
498 509 0.886490 GATTATGGGCTCCAGCACCG 60.886 60.000 0.00 0.00 45.73 4.94
499 510 2.965716 ATTATGGGCTCCAGCACCGC 62.966 60.000 0.00 0.00 45.73 5.68
551 562 2.565391 TCCTACGTGGCAAATGAAGAGA 59.435 45.455 0.00 0.00 35.26 3.10
560 571 4.520492 TGGCAAATGAAGAGAGAGAAAACC 59.480 41.667 0.00 0.00 0.00 3.27
569 580 4.709250 AGAGAGAGAAAACCACTTCCAAC 58.291 43.478 0.00 0.00 0.00 3.77
574 585 0.744281 AAAACCACTTCCAACTGGCG 59.256 50.000 0.00 0.00 34.44 5.69
581 592 2.035832 CACTTCCAACTGGCGGATTTTT 59.964 45.455 0.00 0.00 34.44 1.94
597 612 6.458342 GCGGATTTTTAGATCTGGTTTTCGAT 60.458 38.462 5.18 0.00 33.82 3.59
609 624 8.841444 ATCTGGTTTTCGATGAAATTAAATCG 57.159 30.769 13.73 13.73 45.46 3.34
636 651 3.791887 CGAGACTTGCGAGACGAAATATT 59.208 43.478 8.31 0.00 0.00 1.28
642 657 1.668751 GCGAGACGAAATATTGCCCAA 59.331 47.619 0.00 0.00 0.00 4.12
653 668 7.706179 ACGAAATATTGCCCAACAAATATTGAG 59.294 33.333 0.00 0.00 42.86 3.02
656 671 3.464720 TGCCCAACAAATATTGAGGGA 57.535 42.857 21.13 8.36 45.71 4.20
657 672 3.992999 TGCCCAACAAATATTGAGGGAT 58.007 40.909 21.13 0.00 45.71 3.85
659 674 4.218312 GCCCAACAAATATTGAGGGATCT 58.782 43.478 21.13 0.00 45.71 2.75
663 678 6.015688 CCCAACAAATATTGAGGGATCTGATG 60.016 42.308 15.45 0.00 45.71 3.07
680 695 8.142551 GGATCTGATGTATACTTTCGGTAAACT 58.857 37.037 4.17 0.00 33.74 2.66
681 696 9.530633 GATCTGATGTATACTTTCGGTAAACTT 57.469 33.333 4.17 0.00 33.74 2.66
682 697 8.697846 TCTGATGTATACTTTCGGTAAACTTG 57.302 34.615 4.17 0.00 33.74 3.16
686 701 6.400568 TGTATACTTTCGGTAAACTTGAGGG 58.599 40.000 4.17 0.00 33.74 4.30
688 703 1.810755 CTTTCGGTAAACTTGAGGGCC 59.189 52.381 0.00 0.00 0.00 5.80
689 704 0.766131 TTCGGTAAACTTGAGGGCCA 59.234 50.000 6.18 0.00 0.00 5.36
695 710 3.386726 GGTAAACTTGAGGGCCAAAAACT 59.613 43.478 6.18 0.00 33.76 2.66
760 784 7.867403 AGTTACAATGGTGTTTGCTTTCATTAG 59.133 33.333 0.00 0.00 39.30 1.73
796 820 3.799420 GTCTCTGCATCCGAAGACAATAC 59.201 47.826 0.00 0.00 0.00 1.89
851 884 8.348507 CAAAATCTGAAGCAAAGAAGAGTAACT 58.651 33.333 0.00 0.00 0.00 2.24
875 908 1.153549 GGCACGCTAAGTCCAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
965 999 3.401033 TGCATCGAGAAAGGAGAAACA 57.599 42.857 0.00 0.00 0.00 2.83
966 1000 3.942829 TGCATCGAGAAAGGAGAAACAT 58.057 40.909 0.00 0.00 0.00 2.71
1318 1366 1.154197 GGTCCACGGAGCTACAAAAC 58.846 55.000 8.03 0.00 39.31 2.43
1459 1507 0.179187 CTTCTCGTGCATCTCGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
1473 1521 1.303317 GTCGTGGGCCATCACCTTT 60.303 57.895 10.70 0.00 34.36 3.11
1502 1550 1.247567 ACAAGGAATTCAACCTGGCG 58.752 50.000 7.93 0.00 37.85 5.69
1628 1703 3.181476 GCTCCAAGGAACAACAACAACAT 60.181 43.478 0.00 0.00 0.00 2.71
1685 1760 7.391148 AGTGTTAATAATTGGCTTCGACAAT 57.609 32.000 0.00 0.00 43.92 2.71
1718 1793 5.163509 GCAGTACAGTATCTCCATGTTCTCA 60.164 44.000 0.00 0.00 0.00 3.27
1760 1835 0.798776 CGCCTGAAAACTGCTTCGAT 59.201 50.000 0.00 0.00 0.00 3.59
2006 2081 1.354506 GCTGCTCGCCTTGCATAAG 59.645 57.895 0.00 0.00 39.86 1.73
2021 2096 6.767902 CCTTGCATAAGAAATGCCTAAGAGTA 59.232 38.462 7.46 0.00 43.94 2.59
2094 2169 2.136649 CGCCACGCTAAGATGATCG 58.863 57.895 0.00 0.00 0.00 3.69
2204 2279 1.583495 GCCCCTACTTCAAACGGTGC 61.583 60.000 0.00 0.00 0.00 5.01
2232 2307 0.250989 TGCTAACCTTCAAACCGGGG 60.251 55.000 6.32 0.00 0.00 5.73
2262 2337 2.548057 GAGGTCATCGACAAGTTTTGCA 59.452 45.455 0.00 0.00 33.68 4.08
2313 2388 2.438434 ATTGGCCGGCCTTCTTCG 60.438 61.111 43.34 0.00 36.94 3.79
2320 2395 1.289066 CGGCCTTCTTCGTGTCTCA 59.711 57.895 0.00 0.00 0.00 3.27
2387 2462 1.471684 CTGAGCATTGCCAACCTTCTC 59.528 52.381 4.70 0.00 0.00 2.87
2401 2476 0.179045 CTTCTCGGGGGCCAATAGTG 60.179 60.000 4.39 0.00 0.00 2.74
2590 2837 6.904463 TGGTCATATCAAGCATATGCAATT 57.096 33.333 28.62 13.08 43.05 2.32
2601 2848 3.243501 GCATATGCAATTGGGGTAGTGTG 60.244 47.826 22.84 0.00 41.59 3.82
2659 2906 3.068560 TCTTGTTGTCCGATTTAACCCG 58.931 45.455 0.00 0.00 0.00 5.28
2663 2910 0.322322 TGTCCGATTTAACCCGTGCT 59.678 50.000 0.00 0.00 0.00 4.40
2684 2931 5.046304 TGCTTCTTTACTTGGTGAGCTAGAT 60.046 40.000 0.00 0.00 0.00 1.98
2844 3091 9.135843 GGTTGCTTAATTAACTTGTTCAATACC 57.864 33.333 0.00 0.00 0.00 2.73
2968 3215 2.923605 GCACATCAGTTGAACATGCACC 60.924 50.000 0.00 0.00 33.29 5.01
2986 3233 3.135530 GCACCAGGAGAGGATGAGTTAAT 59.864 47.826 0.00 0.00 0.00 1.40
3046 3293 2.877168 ACGACCTACTCGATGGTGATAC 59.123 50.000 9.21 0.00 46.14 2.24
3047 3294 2.876550 CGACCTACTCGATGGTGATACA 59.123 50.000 9.21 0.00 46.14 2.29
3048 3295 3.058846 CGACCTACTCGATGGTGATACAG 60.059 52.174 9.21 0.00 46.14 2.74
3050 3297 2.623416 CCTACTCGATGGTGATACAGCA 59.377 50.000 6.12 6.12 45.85 4.41
3051 3298 3.068165 CCTACTCGATGGTGATACAGCAA 59.932 47.826 7.66 0.00 44.96 3.91
3052 3299 3.827008 ACTCGATGGTGATACAGCAAT 57.173 42.857 7.66 0.00 44.96 3.56
3053 3300 3.461061 ACTCGATGGTGATACAGCAATG 58.539 45.455 7.66 4.14 44.96 2.82
3054 3301 2.804527 CTCGATGGTGATACAGCAATGG 59.195 50.000 7.66 1.52 44.96 3.16
3055 3302 2.170397 TCGATGGTGATACAGCAATGGT 59.830 45.455 7.66 0.00 44.96 3.55
3056 3303 2.945008 CGATGGTGATACAGCAATGGTT 59.055 45.455 7.66 0.00 44.96 3.67
3057 3304 3.242837 CGATGGTGATACAGCAATGGTTG 60.243 47.826 7.66 0.00 44.96 3.77
3058 3305 3.153369 TGGTGATACAGCAATGGTTGT 57.847 42.857 0.00 0.00 38.96 3.32
3059 3306 2.819019 TGGTGATACAGCAATGGTTGTG 59.181 45.455 0.00 0.00 38.96 3.33
3060 3307 2.164219 GGTGATACAGCAATGGTTGTGG 59.836 50.000 0.00 0.00 38.98 4.17
3061 3308 2.164219 GTGATACAGCAATGGTTGTGGG 59.836 50.000 0.00 0.00 38.98 4.61
3062 3309 2.040947 TGATACAGCAATGGTTGTGGGA 59.959 45.455 0.00 0.00 38.98 4.37
3063 3310 2.198827 TACAGCAATGGTTGTGGGAG 57.801 50.000 0.00 0.00 38.98 4.30
3064 3311 0.540365 ACAGCAATGGTTGTGGGAGG 60.540 55.000 0.00 0.00 37.06 4.30
3065 3312 1.077265 AGCAATGGTTGTGGGAGGG 59.923 57.895 0.00 0.00 0.00 4.30
3066 3313 1.076549 GCAATGGTTGTGGGAGGGA 59.923 57.895 0.00 0.00 0.00 4.20
3067 3314 0.541764 GCAATGGTTGTGGGAGGGAA 60.542 55.000 0.00 0.00 0.00 3.97
3068 3315 1.549203 CAATGGTTGTGGGAGGGAAG 58.451 55.000 0.00 0.00 0.00 3.46
3069 3316 0.409484 AATGGTTGTGGGAGGGAAGG 59.591 55.000 0.00 0.00 0.00 3.46
3070 3317 0.776080 ATGGTTGTGGGAGGGAAGGT 60.776 55.000 0.00 0.00 0.00 3.50
3071 3318 0.996762 TGGTTGTGGGAGGGAAGGTT 60.997 55.000 0.00 0.00 0.00 3.50
3072 3319 0.251209 GGTTGTGGGAGGGAAGGTTC 60.251 60.000 0.00 0.00 0.00 3.62
3073 3320 0.251209 GTTGTGGGAGGGAAGGTTCC 60.251 60.000 0.00 0.00 46.82 3.62
3074 3321 0.402861 TTGTGGGAGGGAAGGTTCCT 60.403 55.000 8.65 0.00 46.72 3.36
3075 3322 0.402861 TGTGGGAGGGAAGGTTCCTT 60.403 55.000 8.65 3.55 46.72 3.36
3076 3323 0.778083 GTGGGAGGGAAGGTTCCTTT 59.222 55.000 8.65 0.00 46.72 3.11
3077 3324 1.147191 GTGGGAGGGAAGGTTCCTTTT 59.853 52.381 8.65 0.00 46.72 2.27
3078 3325 1.863581 TGGGAGGGAAGGTTCCTTTTT 59.136 47.619 8.65 0.00 46.72 1.94
3097 3344 4.640789 TTTTTGTGTGTGGAATACGCTT 57.359 36.364 0.00 0.00 39.36 4.68
3098 3345 3.617540 TTTGTGTGTGGAATACGCTTG 57.382 42.857 0.00 0.00 39.36 4.01
3099 3346 2.535012 TGTGTGTGGAATACGCTTGA 57.465 45.000 0.00 0.00 39.36 3.02
3100 3347 2.412870 TGTGTGTGGAATACGCTTGAG 58.587 47.619 0.00 0.00 39.36 3.02
3101 3348 2.224185 TGTGTGTGGAATACGCTTGAGT 60.224 45.455 0.00 0.00 39.36 3.41
3102 3349 3.006003 TGTGTGTGGAATACGCTTGAGTA 59.994 43.478 0.00 0.00 39.36 2.59
3103 3350 4.181578 GTGTGTGGAATACGCTTGAGTAT 58.818 43.478 0.00 0.00 40.47 2.12
3104 3351 4.032900 GTGTGTGGAATACGCTTGAGTATG 59.967 45.833 0.00 0.00 40.47 2.39
3105 3352 3.001330 GTGTGGAATACGCTTGAGTATGC 59.999 47.826 0.00 0.00 37.39 3.14
3113 3360 3.961474 CGCTTGAGTATGCGTATCATC 57.039 47.619 0.00 0.00 43.16 2.92
3114 3361 3.569548 CGCTTGAGTATGCGTATCATCT 58.430 45.455 0.00 0.00 43.16 2.90
3115 3362 4.723248 CGCTTGAGTATGCGTATCATCTA 58.277 43.478 0.00 0.00 43.16 1.98
3116 3363 5.335935 CGCTTGAGTATGCGTATCATCTAT 58.664 41.667 0.00 0.00 43.16 1.98
3117 3364 5.802451 CGCTTGAGTATGCGTATCATCTATT 59.198 40.000 0.00 0.00 43.16 1.73
3118 3365 6.237411 CGCTTGAGTATGCGTATCATCTATTG 60.237 42.308 0.00 0.00 43.16 1.90
3119 3366 6.808704 GCTTGAGTATGCGTATCATCTATTGA 59.191 38.462 0.00 0.00 39.12 2.57
3120 3367 7.490725 GCTTGAGTATGCGTATCATCTATTGAT 59.509 37.037 0.00 0.00 46.86 2.57
3123 3370 9.396022 TGAGTATGCGTATCATCTATTGATAGA 57.604 33.333 3.37 3.37 45.74 1.98
3124 3371 9.877137 GAGTATGCGTATCATCTATTGATAGAG 57.123 37.037 6.83 0.78 45.74 2.43
3125 3372 9.620259 AGTATGCGTATCATCTATTGATAGAGA 57.380 33.333 6.83 5.24 45.74 3.10
3126 3373 9.877137 GTATGCGTATCATCTATTGATAGAGAG 57.123 37.037 6.83 2.92 45.74 3.20
3127 3374 7.326968 TGCGTATCATCTATTGATAGAGAGG 57.673 40.000 6.83 0.55 45.74 3.69
3128 3375 7.112779 TGCGTATCATCTATTGATAGAGAGGA 58.887 38.462 6.83 5.09 45.74 3.71
3129 3376 7.281999 TGCGTATCATCTATTGATAGAGAGGAG 59.718 40.741 6.83 0.00 45.74 3.69
3130 3377 7.497579 GCGTATCATCTATTGATAGAGAGGAGA 59.502 40.741 6.83 0.53 45.74 3.71
3131 3378 9.045223 CGTATCATCTATTGATAGAGAGGAGAG 57.955 40.741 6.83 0.00 45.74 3.20
3132 3379 9.342308 GTATCATCTATTGATAGAGAGGAGAGG 57.658 40.741 6.83 0.00 45.74 3.69
3133 3380 6.730447 TCATCTATTGATAGAGAGGAGAGGG 58.270 44.000 6.83 0.00 42.20 4.30
3134 3381 6.276806 TCATCTATTGATAGAGAGGAGAGGGT 59.723 42.308 6.83 0.00 42.20 4.34
3135 3382 7.462650 TCATCTATTGATAGAGAGGAGAGGGTA 59.537 40.741 6.83 0.00 42.20 3.69
3136 3383 7.265599 TCTATTGATAGAGAGGAGAGGGTAG 57.734 44.000 0.00 0.00 34.63 3.18
3137 3384 7.026247 TCTATTGATAGAGAGGAGAGGGTAGA 58.974 42.308 0.00 0.00 34.63 2.59
3138 3385 5.996271 TTGATAGAGAGGAGAGGGTAGAA 57.004 43.478 0.00 0.00 0.00 2.10
3139 3386 5.576563 TGATAGAGAGGAGAGGGTAGAAG 57.423 47.826 0.00 0.00 0.00 2.85
3140 3387 5.228383 TGATAGAGAGGAGAGGGTAGAAGA 58.772 45.833 0.00 0.00 0.00 2.87
3141 3388 5.672653 TGATAGAGAGGAGAGGGTAGAAGAA 59.327 44.000 0.00 0.00 0.00 2.52
3142 3389 6.334237 TGATAGAGAGGAGAGGGTAGAAGAAT 59.666 42.308 0.00 0.00 0.00 2.40
3143 3390 7.517953 TGATAGAGAGGAGAGGGTAGAAGAATA 59.482 40.741 0.00 0.00 0.00 1.75
3144 3391 5.948842 AGAGAGGAGAGGGTAGAAGAATAC 58.051 45.833 0.00 0.00 0.00 1.89
3145 3392 5.069518 AGAGGAGAGGGTAGAAGAATACC 57.930 47.826 0.00 0.00 43.90 2.73
3151 3398 2.528041 GGTAGAAGAATACCCGCCTG 57.472 55.000 0.00 0.00 39.53 4.85
3152 3399 1.540580 GGTAGAAGAATACCCGCCTGC 60.541 57.143 0.00 0.00 39.53 4.85
3153 3400 1.138266 GTAGAAGAATACCCGCCTGCA 59.862 52.381 0.00 0.00 0.00 4.41
3154 3401 0.179000 AGAAGAATACCCGCCTGCAG 59.821 55.000 6.78 6.78 0.00 4.41
3155 3402 0.178068 GAAGAATACCCGCCTGCAGA 59.822 55.000 17.39 0.00 0.00 4.26
3156 3403 0.179000 AAGAATACCCGCCTGCAGAG 59.821 55.000 17.39 8.81 0.00 3.35
3157 3404 0.978146 AGAATACCCGCCTGCAGAGT 60.978 55.000 17.39 9.47 0.00 3.24
3158 3405 0.107654 GAATACCCGCCTGCAGAGTT 60.108 55.000 17.39 0.00 0.00 3.01
3159 3406 1.138266 GAATACCCGCCTGCAGAGTTA 59.862 52.381 17.39 3.08 0.00 2.24
3160 3407 0.464452 ATACCCGCCTGCAGAGTTAC 59.536 55.000 17.39 0.00 0.00 2.50
3161 3408 0.901114 TACCCGCCTGCAGAGTTACA 60.901 55.000 17.39 0.00 0.00 2.41
3162 3409 1.221840 CCCGCCTGCAGAGTTACAT 59.778 57.895 17.39 0.00 0.00 2.29
3163 3410 0.811616 CCCGCCTGCAGAGTTACATC 60.812 60.000 17.39 0.00 0.00 3.06
3164 3411 1.148157 CCGCCTGCAGAGTTACATCG 61.148 60.000 17.39 5.13 0.00 3.84
3165 3412 0.458543 CGCCTGCAGAGTTACATCGT 60.459 55.000 17.39 0.00 0.00 3.73
3166 3413 1.726853 GCCTGCAGAGTTACATCGTT 58.273 50.000 17.39 0.00 0.00 3.85
3167 3414 2.734175 CGCCTGCAGAGTTACATCGTTA 60.734 50.000 17.39 0.00 0.00 3.18
3168 3415 2.603560 GCCTGCAGAGTTACATCGTTAC 59.396 50.000 17.39 0.00 0.00 2.50
3169 3416 3.845178 CCTGCAGAGTTACATCGTTACA 58.155 45.455 17.39 0.00 0.00 2.41
3170 3417 3.859961 CCTGCAGAGTTACATCGTTACAG 59.140 47.826 17.39 0.00 0.00 2.74
3171 3418 3.250744 TGCAGAGTTACATCGTTACAGC 58.749 45.455 0.00 0.00 0.00 4.40
3172 3419 2.603560 GCAGAGTTACATCGTTACAGCC 59.396 50.000 0.00 0.00 0.00 4.85
3173 3420 3.187700 CAGAGTTACATCGTTACAGCCC 58.812 50.000 0.00 0.00 0.00 5.19
3174 3421 2.829720 AGAGTTACATCGTTACAGCCCA 59.170 45.455 0.00 0.00 0.00 5.36
3175 3422 3.119101 AGAGTTACATCGTTACAGCCCAG 60.119 47.826 0.00 0.00 0.00 4.45
3176 3423 2.093658 AGTTACATCGTTACAGCCCAGG 60.094 50.000 0.00 0.00 0.00 4.45
3177 3424 1.563924 TACATCGTTACAGCCCAGGT 58.436 50.000 0.00 0.00 0.00 4.00
3178 3425 1.563924 ACATCGTTACAGCCCAGGTA 58.436 50.000 0.00 0.00 0.00 3.08
3179 3426 1.206371 ACATCGTTACAGCCCAGGTAC 59.794 52.381 0.00 0.00 0.00 3.34
3180 3427 0.458669 ATCGTTACAGCCCAGGTACG 59.541 55.000 0.00 0.00 0.00 3.67
3181 3428 1.153706 CGTTACAGCCCAGGTACGG 60.154 63.158 0.00 0.00 0.00 4.02
3188 3435 2.045340 CCCAGGTACGGGCAAAGG 60.045 66.667 0.00 0.00 44.19 3.11
3189 3436 2.750237 CCAGGTACGGGCAAAGGC 60.750 66.667 0.00 0.00 36.55 4.35
3205 3452 2.282180 GCCAGAGGCCGGAAACAA 60.282 61.111 5.05 0.00 44.06 2.83
3206 3453 1.901464 GCCAGAGGCCGGAAACAAA 60.901 57.895 5.05 0.00 44.06 2.83
3207 3454 1.460273 GCCAGAGGCCGGAAACAAAA 61.460 55.000 5.05 0.00 44.06 2.44
3208 3455 1.036707 CCAGAGGCCGGAAACAAAAA 58.963 50.000 5.05 0.00 0.00 1.94
3223 3470 3.527434 AAAAAGCTACGTCTCCCCG 57.473 52.632 0.00 0.00 0.00 5.73
3224 3471 0.672711 AAAAAGCTACGTCTCCCCGC 60.673 55.000 0.00 0.00 0.00 6.13
3225 3472 1.542187 AAAAGCTACGTCTCCCCGCT 61.542 55.000 0.00 0.00 0.00 5.52
3226 3473 1.946475 AAAGCTACGTCTCCCCGCTC 61.946 60.000 0.00 0.00 0.00 5.03
3227 3474 3.138798 GCTACGTCTCCCCGCTCA 61.139 66.667 0.00 0.00 0.00 4.26
3228 3475 2.799371 CTACGTCTCCCCGCTCAC 59.201 66.667 0.00 0.00 0.00 3.51
3229 3476 2.753043 TACGTCTCCCCGCTCACC 60.753 66.667 0.00 0.00 0.00 4.02
3241 3488 3.314331 CTCACCCGCCTGTCCACT 61.314 66.667 0.00 0.00 0.00 4.00
3242 3489 3.302347 CTCACCCGCCTGTCCACTC 62.302 68.421 0.00 0.00 0.00 3.51
3243 3490 3.314331 CACCCGCCTGTCCACTCT 61.314 66.667 0.00 0.00 0.00 3.24
3244 3491 1.982395 CACCCGCCTGTCCACTCTA 60.982 63.158 0.00 0.00 0.00 2.43
3245 3492 1.682684 ACCCGCCTGTCCACTCTAG 60.683 63.158 0.00 0.00 0.00 2.43
3246 3493 2.496817 CCGCCTGTCCACTCTAGC 59.503 66.667 0.00 0.00 0.00 3.42
3247 3494 2.055042 CCGCCTGTCCACTCTAGCT 61.055 63.158 0.00 0.00 0.00 3.32
3248 3495 0.752009 CCGCCTGTCCACTCTAGCTA 60.752 60.000 0.00 0.00 0.00 3.32
3249 3496 1.103803 CGCCTGTCCACTCTAGCTAA 58.896 55.000 0.00 0.00 0.00 3.09
3250 3497 1.202313 CGCCTGTCCACTCTAGCTAAC 60.202 57.143 0.00 0.00 0.00 2.34
3251 3498 1.137282 GCCTGTCCACTCTAGCTAACC 59.863 57.143 0.00 0.00 0.00 2.85
3252 3499 2.457598 CCTGTCCACTCTAGCTAACCA 58.542 52.381 0.00 0.00 0.00 3.67
3253 3500 2.832129 CCTGTCCACTCTAGCTAACCAA 59.168 50.000 0.00 0.00 0.00 3.67
3254 3501 3.452627 CCTGTCCACTCTAGCTAACCAAT 59.547 47.826 0.00 0.00 0.00 3.16
3255 3502 4.442192 CCTGTCCACTCTAGCTAACCAATC 60.442 50.000 0.00 0.00 0.00 2.67
3256 3503 3.130516 TGTCCACTCTAGCTAACCAATCG 59.869 47.826 0.00 0.00 0.00 3.34
3257 3504 2.100916 TCCACTCTAGCTAACCAATCGC 59.899 50.000 0.00 0.00 0.00 4.58
3258 3505 2.101582 CCACTCTAGCTAACCAATCGCT 59.898 50.000 0.00 0.00 37.77 4.93
3259 3506 3.376540 CACTCTAGCTAACCAATCGCTC 58.623 50.000 0.00 0.00 35.33 5.03
3260 3507 3.024547 ACTCTAGCTAACCAATCGCTCA 58.975 45.455 0.00 0.00 35.33 4.26
3261 3508 3.639094 ACTCTAGCTAACCAATCGCTCAT 59.361 43.478 0.00 0.00 35.33 2.90
3262 3509 3.982475 TCTAGCTAACCAATCGCTCATG 58.018 45.455 0.00 0.00 35.33 3.07
3263 3510 2.698855 AGCTAACCAATCGCTCATGT 57.301 45.000 0.00 0.00 0.00 3.21
3264 3511 2.555199 AGCTAACCAATCGCTCATGTC 58.445 47.619 0.00 0.00 0.00 3.06
3265 3512 1.258982 GCTAACCAATCGCTCATGTCG 59.741 52.381 0.00 0.00 0.00 4.35
3266 3513 1.258982 CTAACCAATCGCTCATGTCGC 59.741 52.381 0.00 0.00 0.00 5.19
3267 3514 0.391661 AACCAATCGCTCATGTCGCT 60.392 50.000 7.84 0.00 0.00 4.93
3279 3674 3.531538 TCATGTCGCTATGAAAGAACCC 58.468 45.455 0.00 0.00 34.32 4.11
3296 3691 0.972471 CCCTGCAAGAACCCATTCCC 60.972 60.000 0.00 0.00 35.18 3.97
3337 3732 1.321743 CGTAGAACATCTTGCAGCGAC 59.678 52.381 0.00 0.00 0.00 5.19
3364 3759 1.837747 GCGTTATTGAAAATGACCGCG 59.162 47.619 0.00 0.00 0.00 6.46
3369 3764 2.679355 TTGAAAATGACCGCGTTCTG 57.321 45.000 4.96 0.00 0.00 3.02
3394 3789 0.991920 TCCACATCTCCCAAAGGACC 59.008 55.000 0.00 0.00 37.19 4.46
3417 3812 2.227089 ATCGCGAGGGTGTTGAGGTC 62.227 60.000 16.66 0.00 0.00 3.85
3418 3813 2.932234 CGCGAGGGTGTTGAGGTCT 61.932 63.158 0.00 0.00 0.00 3.85
3439 3834 4.760047 CTGGTCCGTTGGCCCGAG 62.760 72.222 0.00 0.00 0.00 4.63
3467 3862 2.029110 GCCATGCACCAATGTAACAACT 60.029 45.455 0.00 0.00 0.00 3.16
3481 3876 1.450312 CAACTGATCGTCCAGCCCC 60.450 63.158 6.70 0.00 37.68 5.80
3508 3903 1.002011 GTTCTCCTGACCCAAGGCC 60.002 63.158 0.00 0.00 37.24 5.19
3509 3904 1.463214 TTCTCCTGACCCAAGGCCA 60.463 57.895 5.01 0.00 37.24 5.36
3515 3910 2.747855 GACCCAAGGCCAAGAGCG 60.748 66.667 5.01 0.00 45.17 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.676746 GCCTATTTTCCCCTCGGTTC 58.323 55.000 0.00 0.00 0.00 3.62
4 5 0.465642 GTGGCCTATTTTCCCCTCGG 60.466 60.000 3.32 0.00 0.00 4.63
6 7 2.091885 TCATGTGGCCTATTTTCCCCTC 60.092 50.000 3.32 0.00 0.00 4.30
7 8 1.929494 TCATGTGGCCTATTTTCCCCT 59.071 47.619 3.32 0.00 0.00 4.79
8 9 2.452600 TCATGTGGCCTATTTTCCCC 57.547 50.000 3.32 0.00 0.00 4.81
9 10 3.769300 ACTTTCATGTGGCCTATTTTCCC 59.231 43.478 3.32 0.00 0.00 3.97
10 11 4.747810 CACTTTCATGTGGCCTATTTTCC 58.252 43.478 3.32 0.00 34.56 3.13
21 22 4.823989 AGGAGAGAAAACCACTTTCATGTG 59.176 41.667 0.00 0.00 45.15 3.21
22 23 5.053978 AGGAGAGAAAACCACTTTCATGT 57.946 39.130 0.00 0.00 45.15 3.21
23 24 7.693969 ATAAGGAGAGAAAACCACTTTCATG 57.306 36.000 0.52 0.00 45.15 3.07
24 25 8.579863 CAAATAAGGAGAGAAAACCACTTTCAT 58.420 33.333 0.52 0.00 45.15 2.57
25 26 7.470009 GCAAATAAGGAGAGAAAACCACTTTCA 60.470 37.037 0.52 0.00 45.15 2.69
26 27 6.863645 GCAAATAAGGAGAGAAAACCACTTTC 59.136 38.462 0.00 0.00 43.36 2.62
27 28 6.239317 GGCAAATAAGGAGAGAAAACCACTTT 60.239 38.462 0.00 0.00 0.00 2.66
28 29 5.243954 GGCAAATAAGGAGAGAAAACCACTT 59.756 40.000 0.00 0.00 0.00 3.16
29 30 4.767409 GGCAAATAAGGAGAGAAAACCACT 59.233 41.667 0.00 0.00 0.00 4.00
30 31 4.522789 TGGCAAATAAGGAGAGAAAACCAC 59.477 41.667 0.00 0.00 0.00 4.16
31 32 4.522789 GTGGCAAATAAGGAGAGAAAACCA 59.477 41.667 0.00 0.00 0.00 3.67
32 33 4.082190 GGTGGCAAATAAGGAGAGAAAACC 60.082 45.833 0.00 0.00 0.00 3.27
33 34 4.767409 AGGTGGCAAATAAGGAGAGAAAAC 59.233 41.667 0.00 0.00 0.00 2.43
34 35 4.998051 AGGTGGCAAATAAGGAGAGAAAA 58.002 39.130 0.00 0.00 0.00 2.29
35 36 4.657814 AGGTGGCAAATAAGGAGAGAAA 57.342 40.909 0.00 0.00 0.00 2.52
36 37 4.164221 CCTAGGTGGCAAATAAGGAGAGAA 59.836 45.833 0.00 0.00 0.00 2.87
37 38 3.711704 CCTAGGTGGCAAATAAGGAGAGA 59.288 47.826 0.00 0.00 0.00 3.10
38 39 3.711704 TCCTAGGTGGCAAATAAGGAGAG 59.288 47.826 9.08 0.00 35.26 3.20
39 40 3.454812 GTCCTAGGTGGCAAATAAGGAGA 59.545 47.826 9.08 0.00 33.92 3.71
40 41 3.199946 TGTCCTAGGTGGCAAATAAGGAG 59.800 47.826 9.08 0.00 33.92 3.69
41 42 3.186283 TGTCCTAGGTGGCAAATAAGGA 58.814 45.455 9.08 5.33 35.26 3.36
42 43 3.545703 CTGTCCTAGGTGGCAAATAAGG 58.454 50.000 9.08 0.00 35.26 2.69
43 44 2.945668 GCTGTCCTAGGTGGCAAATAAG 59.054 50.000 9.08 0.00 35.26 1.73
44 45 2.356741 GGCTGTCCTAGGTGGCAAATAA 60.357 50.000 9.08 0.00 35.26 1.40
45 46 1.211949 GGCTGTCCTAGGTGGCAAATA 59.788 52.381 9.08 0.00 35.26 1.40
46 47 0.034089 GGCTGTCCTAGGTGGCAAAT 60.034 55.000 9.08 0.00 35.26 2.32
47 48 1.378762 GGCTGTCCTAGGTGGCAAA 59.621 57.895 9.08 0.00 35.26 3.68
48 49 2.954684 CGGCTGTCCTAGGTGGCAA 61.955 63.158 9.08 0.00 35.26 4.52
49 50 3.390521 CGGCTGTCCTAGGTGGCA 61.391 66.667 9.08 6.01 35.26 4.92
50 51 2.465055 AAACGGCTGTCCTAGGTGGC 62.465 60.000 9.08 11.23 35.26 5.01
51 52 0.391263 GAAACGGCTGTCCTAGGTGG 60.391 60.000 9.08 1.45 37.10 4.61
52 53 0.320374 TGAAACGGCTGTCCTAGGTG 59.680 55.000 9.08 1.80 0.00 4.00
53 54 1.207329 GATGAAACGGCTGTCCTAGGT 59.793 52.381 9.08 0.00 0.00 3.08
54 55 1.207089 TGATGAAACGGCTGTCCTAGG 59.793 52.381 0.82 0.82 0.00 3.02
55 56 2.672961 TGATGAAACGGCTGTCCTAG 57.327 50.000 0.00 0.00 0.00 3.02
56 57 3.071479 GTTTGATGAAACGGCTGTCCTA 58.929 45.455 0.00 0.00 32.49 2.94
57 58 1.880027 GTTTGATGAAACGGCTGTCCT 59.120 47.619 0.00 0.00 32.49 3.85
58 59 1.606668 TGTTTGATGAAACGGCTGTCC 59.393 47.619 0.00 0.00 43.92 4.02
59 60 2.650608 GTGTTTGATGAAACGGCTGTC 58.349 47.619 0.00 0.00 43.92 3.51
60 61 1.002900 CGTGTTTGATGAAACGGCTGT 60.003 47.619 3.29 0.00 43.92 4.40
61 62 1.673760 CGTGTTTGATGAAACGGCTG 58.326 50.000 3.29 0.00 43.92 4.85
62 63 0.040425 GCGTGTTTGATGAAACGGCT 60.040 50.000 13.63 0.00 43.92 5.52
63 64 2.420097 GCGTGTTTGATGAAACGGC 58.580 52.632 7.62 7.62 43.92 5.68
64 65 0.386731 GGGCGTGTTTGATGAAACGG 60.387 55.000 3.29 0.00 43.92 4.44
65 66 0.309302 TGGGCGTGTTTGATGAAACG 59.691 50.000 3.29 0.00 43.92 3.60
66 67 2.595386 GATGGGCGTGTTTGATGAAAC 58.405 47.619 0.27 0.27 41.72 2.78
67 68 1.543802 GGATGGGCGTGTTTGATGAAA 59.456 47.619 0.00 0.00 0.00 2.69
68 69 1.173043 GGATGGGCGTGTTTGATGAA 58.827 50.000 0.00 0.00 0.00 2.57
69 70 0.679640 GGGATGGGCGTGTTTGATGA 60.680 55.000 0.00 0.00 0.00 2.92
70 71 0.964860 TGGGATGGGCGTGTTTGATG 60.965 55.000 0.00 0.00 0.00 3.07
71 72 0.965363 GTGGGATGGGCGTGTTTGAT 60.965 55.000 0.00 0.00 0.00 2.57
72 73 1.602323 GTGGGATGGGCGTGTTTGA 60.602 57.895 0.00 0.00 0.00 2.69
73 74 2.635443 GGTGGGATGGGCGTGTTTG 61.635 63.158 0.00 0.00 0.00 2.93
74 75 2.282887 GGTGGGATGGGCGTGTTT 60.283 61.111 0.00 0.00 0.00 2.83
75 76 4.360405 GGGTGGGATGGGCGTGTT 62.360 66.667 0.00 0.00 0.00 3.32
77 78 4.489771 GAGGGTGGGATGGGCGTG 62.490 72.222 0.00 0.00 0.00 5.34
80 81 4.176752 GTCGAGGGTGGGATGGGC 62.177 72.222 0.00 0.00 0.00 5.36
81 82 2.297895 TTGTCGAGGGTGGGATGGG 61.298 63.158 0.00 0.00 0.00 4.00
82 83 1.078426 GTTGTCGAGGGTGGGATGG 60.078 63.158 0.00 0.00 0.00 3.51
83 84 1.078426 GGTTGTCGAGGGTGGGATG 60.078 63.158 0.00 0.00 0.00 3.51
84 85 0.840722 AAGGTTGTCGAGGGTGGGAT 60.841 55.000 0.00 0.00 0.00 3.85
85 86 1.460689 AAGGTTGTCGAGGGTGGGA 60.461 57.895 0.00 0.00 0.00 4.37
86 87 1.003718 GAAGGTTGTCGAGGGTGGG 60.004 63.158 0.00 0.00 0.00 4.61
87 88 0.324943 ATGAAGGTTGTCGAGGGTGG 59.675 55.000 0.00 0.00 0.00 4.61
88 89 1.676014 GGATGAAGGTTGTCGAGGGTG 60.676 57.143 0.00 0.00 0.00 4.61
89 90 0.613777 GGATGAAGGTTGTCGAGGGT 59.386 55.000 0.00 0.00 0.00 4.34
90 91 0.905357 AGGATGAAGGTTGTCGAGGG 59.095 55.000 0.00 0.00 0.00 4.30
91 92 1.134670 GGAGGATGAAGGTTGTCGAGG 60.135 57.143 0.00 0.00 0.00 4.63
92 93 1.134670 GGGAGGATGAAGGTTGTCGAG 60.135 57.143 0.00 0.00 0.00 4.04
93 94 0.902531 GGGAGGATGAAGGTTGTCGA 59.097 55.000 0.00 0.00 0.00 4.20
94 95 0.107654 GGGGAGGATGAAGGTTGTCG 60.108 60.000 0.00 0.00 0.00 4.35
95 96 1.065126 CAGGGGAGGATGAAGGTTGTC 60.065 57.143 0.00 0.00 0.00 3.18
96 97 0.995024 CAGGGGAGGATGAAGGTTGT 59.005 55.000 0.00 0.00 0.00 3.32
97 98 0.394899 GCAGGGGAGGATGAAGGTTG 60.395 60.000 0.00 0.00 0.00 3.77
98 99 0.551131 AGCAGGGGAGGATGAAGGTT 60.551 55.000 0.00 0.00 0.00 3.50
99 100 1.083706 AGCAGGGGAGGATGAAGGT 59.916 57.895 0.00 0.00 0.00 3.50
100 101 1.530771 CAGCAGGGGAGGATGAAGG 59.469 63.158 0.00 0.00 0.00 3.46
101 102 1.153005 GCAGCAGGGGAGGATGAAG 60.153 63.158 0.00 0.00 0.00 3.02
102 103 2.683465 GGCAGCAGGGGAGGATGAA 61.683 63.158 0.00 0.00 0.00 2.57
103 104 3.092511 GGCAGCAGGGGAGGATGA 61.093 66.667 0.00 0.00 0.00 2.92
104 105 3.414193 TGGCAGCAGGGGAGGATG 61.414 66.667 0.00 0.00 0.00 3.51
105 106 3.415087 GTGGCAGCAGGGGAGGAT 61.415 66.667 0.00 0.00 0.00 3.24
106 107 4.980592 TGTGGCAGCAGGGGAGGA 62.981 66.667 0.00 0.00 0.00 3.71
107 108 4.729918 GTGTGGCAGCAGGGGAGG 62.730 72.222 0.00 0.00 0.00 4.30
108 109 4.729918 GGTGTGGCAGCAGGGGAG 62.730 72.222 0.00 0.00 0.00 4.30
112 113 4.584518 TGGTGGTGTGGCAGCAGG 62.585 66.667 0.99 0.00 42.60 4.85
113 114 3.289834 GTGGTGGTGTGGCAGCAG 61.290 66.667 0.99 0.00 42.60 4.24
114 115 4.892965 GGTGGTGGTGTGGCAGCA 62.893 66.667 0.00 0.00 39.63 4.41
116 117 4.974721 GGGGTGGTGGTGTGGCAG 62.975 72.222 0.00 0.00 0.00 4.85
119 120 4.636435 GTCGGGGTGGTGGTGTGG 62.636 72.222 0.00 0.00 0.00 4.17
120 121 3.408099 TTGTCGGGGTGGTGGTGTG 62.408 63.158 0.00 0.00 0.00 3.82
121 122 3.091190 TTGTCGGGGTGGTGGTGT 61.091 61.111 0.00 0.00 0.00 4.16
122 123 2.593436 GTTGTCGGGGTGGTGGTG 60.593 66.667 0.00 0.00 0.00 4.17
123 124 3.881104 GGTTGTCGGGGTGGTGGT 61.881 66.667 0.00 0.00 0.00 4.16
124 125 3.879885 TGGTTGTCGGGGTGGTGG 61.880 66.667 0.00 0.00 0.00 4.61
125 126 1.760479 TAGTGGTTGTCGGGGTGGTG 61.760 60.000 0.00 0.00 0.00 4.17
126 127 1.459921 TAGTGGTTGTCGGGGTGGT 60.460 57.895 0.00 0.00 0.00 4.16
127 128 1.295423 CTAGTGGTTGTCGGGGTGG 59.705 63.158 0.00 0.00 0.00 4.61
128 129 1.375523 GCTAGTGGTTGTCGGGGTG 60.376 63.158 0.00 0.00 0.00 4.61
129 130 2.939261 CGCTAGTGGTTGTCGGGGT 61.939 63.158 0.00 0.00 0.00 4.95
130 131 2.125673 CGCTAGTGGTTGTCGGGG 60.126 66.667 0.00 0.00 0.00 5.73
131 132 2.125673 CCGCTAGTGGTTGTCGGG 60.126 66.667 14.58 0.00 36.73 5.14
132 133 1.736645 CACCGCTAGTGGTTGTCGG 60.737 63.158 25.53 12.88 41.38 4.79
133 134 3.856508 CACCGCTAGTGGTTGTCG 58.143 61.111 25.53 10.58 41.38 4.35
148 149 3.570212 ATATGCGGGGAGGGGCAC 61.570 66.667 0.00 0.00 42.76 5.01
149 150 3.569210 CATATGCGGGGAGGGGCA 61.569 66.667 0.00 0.00 44.29 5.36
151 152 4.351054 GGCATATGCGGGGAGGGG 62.351 72.222 21.04 0.00 43.26 4.79
152 153 3.569210 TGGCATATGCGGGGAGGG 61.569 66.667 21.04 0.00 43.26 4.30
153 154 2.281761 GTGGCATATGCGGGGAGG 60.282 66.667 21.04 0.00 43.26 4.30
154 155 1.893808 GTGTGGCATATGCGGGGAG 60.894 63.158 21.04 0.00 43.26 4.30
155 156 2.191908 GTGTGGCATATGCGGGGA 59.808 61.111 21.04 2.60 43.26 4.81
156 157 2.906897 GGTGTGGCATATGCGGGG 60.907 66.667 21.04 0.00 43.26 5.73
157 158 2.906897 GGGTGTGGCATATGCGGG 60.907 66.667 21.04 0.00 43.26 6.13
158 159 2.124362 TGGGTGTGGCATATGCGG 60.124 61.111 21.04 0.00 43.26 5.69
159 160 2.480610 GGTGGGTGTGGCATATGCG 61.481 63.158 21.04 0.00 43.26 4.73
160 161 1.076777 AGGTGGGTGTGGCATATGC 60.077 57.895 19.79 19.79 41.14 3.14
161 162 0.466189 GGAGGTGGGTGTGGCATATG 60.466 60.000 0.00 0.00 0.00 1.78
162 163 0.918799 TGGAGGTGGGTGTGGCATAT 60.919 55.000 0.00 0.00 0.00 1.78
163 164 1.136961 TTGGAGGTGGGTGTGGCATA 61.137 55.000 0.00 0.00 0.00 3.14
164 165 2.468868 TTGGAGGTGGGTGTGGCAT 61.469 57.895 0.00 0.00 0.00 4.40
165 166 3.099841 TTGGAGGTGGGTGTGGCA 61.100 61.111 0.00 0.00 0.00 4.92
166 167 2.597510 GTTGGAGGTGGGTGTGGC 60.598 66.667 0.00 0.00 0.00 5.01
167 168 2.115266 GGTTGGAGGTGGGTGTGG 59.885 66.667 0.00 0.00 0.00 4.17
168 169 1.528309 GTGGTTGGAGGTGGGTGTG 60.528 63.158 0.00 0.00 0.00 3.82
169 170 1.360393 ATGTGGTTGGAGGTGGGTGT 61.360 55.000 0.00 0.00 0.00 4.16
170 171 0.895100 CATGTGGTTGGAGGTGGGTG 60.895 60.000 0.00 0.00 0.00 4.61
171 172 1.065410 TCATGTGGTTGGAGGTGGGT 61.065 55.000 0.00 0.00 0.00 4.51
172 173 0.332632 ATCATGTGGTTGGAGGTGGG 59.667 55.000 0.00 0.00 0.00 4.61
173 174 2.220653 AATCATGTGGTTGGAGGTGG 57.779 50.000 0.00 0.00 0.00 4.61
174 175 2.231964 CCAAATCATGTGGTTGGAGGTG 59.768 50.000 15.41 0.00 43.82 4.00
175 176 2.528564 CCAAATCATGTGGTTGGAGGT 58.471 47.619 15.41 0.00 43.82 3.85
183 184 5.521010 GCAATGTATGAACCAAATCATGTGG 59.479 40.000 0.00 0.00 40.21 4.17
184 185 5.521010 GGCAATGTATGAACCAAATCATGTG 59.479 40.000 0.00 0.00 40.21 3.21
185 186 5.663456 GGCAATGTATGAACCAAATCATGT 58.337 37.500 0.00 0.00 40.21 3.21
186 187 4.741185 CGGCAATGTATGAACCAAATCATG 59.259 41.667 0.23 0.00 40.21 3.07
187 188 4.737352 GCGGCAATGTATGAACCAAATCAT 60.737 41.667 0.00 0.00 42.52 2.45
188 189 3.428725 GCGGCAATGTATGAACCAAATCA 60.429 43.478 0.00 0.00 0.00 2.57
189 190 3.115554 GCGGCAATGTATGAACCAAATC 58.884 45.455 0.00 0.00 0.00 2.17
190 191 2.159114 GGCGGCAATGTATGAACCAAAT 60.159 45.455 3.07 0.00 0.00 2.32
191 192 1.203523 GGCGGCAATGTATGAACCAAA 59.796 47.619 3.07 0.00 0.00 3.28
192 193 0.814457 GGCGGCAATGTATGAACCAA 59.186 50.000 3.07 0.00 0.00 3.67
193 194 1.034838 GGGCGGCAATGTATGAACCA 61.035 55.000 12.47 0.00 0.00 3.67
194 195 0.751643 AGGGCGGCAATGTATGAACC 60.752 55.000 12.47 0.00 0.00 3.62
195 196 1.065551 GAAGGGCGGCAATGTATGAAC 59.934 52.381 12.47 0.00 0.00 3.18
196 197 1.388547 GAAGGGCGGCAATGTATGAA 58.611 50.000 12.47 0.00 0.00 2.57
197 198 0.465460 GGAAGGGCGGCAATGTATGA 60.465 55.000 12.47 0.00 0.00 2.15
198 199 0.751277 TGGAAGGGCGGCAATGTATG 60.751 55.000 12.47 0.00 0.00 2.39
199 200 0.185901 ATGGAAGGGCGGCAATGTAT 59.814 50.000 12.47 0.00 0.00 2.29
200 201 0.033601 AATGGAAGGGCGGCAATGTA 60.034 50.000 12.47 0.00 0.00 2.29
201 202 1.305213 AATGGAAGGGCGGCAATGT 60.305 52.632 12.47 0.00 0.00 2.71
202 203 1.142314 CAATGGAAGGGCGGCAATG 59.858 57.895 12.47 0.00 0.00 2.82
203 204 2.724273 GCAATGGAAGGGCGGCAAT 61.724 57.895 12.47 0.00 0.00 3.56
204 205 3.381136 GCAATGGAAGGGCGGCAA 61.381 61.111 12.47 0.00 0.00 4.52
205 206 4.675161 TGCAATGGAAGGGCGGCA 62.675 61.111 12.47 0.00 0.00 5.69
206 207 3.830192 CTGCAATGGAAGGGCGGC 61.830 66.667 0.00 0.00 0.00 6.53
207 208 2.361610 ACTGCAATGGAAGGGCGG 60.362 61.111 0.00 0.00 39.77 6.13
208 209 2.879907 CACTGCAATGGAAGGGCG 59.120 61.111 0.00 0.00 0.00 6.13
209 210 2.575461 GCACTGCAATGGAAGGGC 59.425 61.111 0.00 0.00 43.36 5.19
210 211 1.888018 CTGCACTGCAATGGAAGGG 59.112 57.895 4.99 0.00 38.41 3.95
211 212 1.214589 GCTGCACTGCAATGGAAGG 59.785 57.895 4.99 0.00 38.41 3.46
212 213 0.109272 CTGCTGCACTGCAATGGAAG 60.109 55.000 4.99 0.00 42.83 3.46
213 214 1.529152 CCTGCTGCACTGCAATGGAA 61.529 55.000 4.99 0.00 42.83 3.53
214 215 1.974875 CCTGCTGCACTGCAATGGA 60.975 57.895 4.99 0.00 42.83 3.41
215 216 2.571757 CCTGCTGCACTGCAATGG 59.428 61.111 4.99 3.94 42.83 3.16
216 217 2.126071 GCCTGCTGCACTGCAATG 60.126 61.111 12.94 0.00 42.83 2.82
217 218 2.282958 AGCCTGCTGCACTGCAAT 60.283 55.556 18.27 0.10 44.83 3.56
218 219 2.981909 GAGCCTGCTGCACTGCAA 60.982 61.111 18.27 0.00 44.83 4.08
263 264 1.300233 GGAAGCTAGGGCATCGACG 60.300 63.158 0.00 0.00 41.70 5.12
278 279 1.847328 TCGGATGTAGCACAGAGGAA 58.153 50.000 0.00 0.00 0.00 3.36
279 280 1.847328 TTCGGATGTAGCACAGAGGA 58.153 50.000 0.00 0.00 0.00 3.71
280 281 2.271800 GTTTCGGATGTAGCACAGAGG 58.728 52.381 0.00 0.00 0.00 3.69
285 286 2.906354 AGATGGTTTCGGATGTAGCAC 58.094 47.619 0.00 0.00 0.00 4.40
290 291 1.916181 AGGGAAGATGGTTTCGGATGT 59.084 47.619 0.00 0.00 0.00 3.06
295 296 2.565841 GATCCAGGGAAGATGGTTTCG 58.434 52.381 0.00 0.00 39.01 3.46
296 297 2.242196 TGGATCCAGGGAAGATGGTTTC 59.758 50.000 11.44 0.00 39.01 2.78
311 312 1.817099 CACGGCAGAGCTTGGATCC 60.817 63.158 4.20 4.20 0.00 3.36
317 318 2.357517 CCGAACACGGCAGAGCTT 60.358 61.111 0.00 0.00 40.29 3.74
327 328 1.153349 GGGAGAGATGGCCGAACAC 60.153 63.158 0.00 0.00 0.00 3.32
329 330 2.506472 GGGGAGAGATGGCCGAAC 59.494 66.667 0.00 0.00 0.00 3.95
334 335 3.866582 CCACGGGGGAGAGATGGC 61.867 72.222 0.00 0.00 40.01 4.40
353 354 2.359967 GGTGGGGAGAAGGACCTCG 61.360 68.421 0.00 0.00 34.08 4.63
357 358 1.077429 GCATGGTGGGGAGAAGGAC 60.077 63.158 0.00 0.00 0.00 3.85
367 368 3.179265 GTCGTCGTCGCATGGTGG 61.179 66.667 0.00 0.00 36.96 4.61
373 374 0.376152 GATCTAAGGTCGTCGTCGCA 59.624 55.000 0.00 0.00 36.96 5.10
374 375 0.656785 AGATCTAAGGTCGTCGTCGC 59.343 55.000 0.00 0.00 36.96 5.19
378 379 2.706273 CGAACAGATCTAAGGTCGTCG 58.294 52.381 11.35 2.77 0.00 5.12
381 382 1.536284 GGGCGAACAGATCTAAGGTCG 60.536 57.143 14.44 14.44 0.00 4.79
387 388 3.760693 GCAAGGGCGAACAGATCTA 57.239 52.632 0.00 0.00 0.00 1.98
402 403 1.641140 CACGACAAAGACAGCGCAA 59.359 52.632 11.47 0.00 0.00 4.85
404 405 1.954146 TCCACGACAAAGACAGCGC 60.954 57.895 0.00 0.00 0.00 5.92
405 406 1.557443 GGTCCACGACAAAGACAGCG 61.557 60.000 0.00 0.00 33.68 5.18
406 407 0.249911 AGGTCCACGACAAAGACAGC 60.250 55.000 0.00 0.00 33.68 4.40
408 409 0.391597 GGAGGTCCACGACAAAGACA 59.608 55.000 0.00 0.00 33.68 3.41
409 410 0.320508 GGGAGGTCCACGACAAAGAC 60.321 60.000 0.00 0.00 37.91 3.01
422 433 1.707427 ACAAGCAGAAAGATGGGAGGT 59.293 47.619 0.00 0.00 0.00 3.85
440 451 1.406751 CCACGCAGGGTCATATCAACA 60.407 52.381 0.00 0.00 0.00 3.33
442 453 0.463654 GCCACGCAGGGTCATATCAA 60.464 55.000 0.00 0.00 38.09 2.57
444 455 4.049393 GCCACGCAGGGTCATATC 57.951 61.111 0.00 0.00 38.09 1.63
451 462 4.641645 TTGGTCAGCCACGCAGGG 62.642 66.667 0.00 0.00 46.01 4.45
461 472 0.256752 TCCCATCATGGCTTGGTCAG 59.743 55.000 0.00 0.00 35.79 3.51
462 473 0.928505 ATCCCATCATGGCTTGGTCA 59.071 50.000 0.00 0.00 35.79 4.02
463 474 2.077687 AATCCCATCATGGCTTGGTC 57.922 50.000 0.00 0.00 35.79 4.02
464 475 3.503365 CATAATCCCATCATGGCTTGGT 58.497 45.455 0.00 0.00 35.79 3.67
466 477 2.829720 CCCATAATCCCATCATGGCTTG 59.170 50.000 0.00 0.00 38.32 4.01
467 478 2.824303 GCCCATAATCCCATCATGGCTT 60.824 50.000 0.00 0.00 38.32 4.35
468 479 1.272872 GCCCATAATCCCATCATGGCT 60.273 52.381 0.00 0.00 38.32 4.75
469 480 1.188863 GCCCATAATCCCATCATGGC 58.811 55.000 0.00 0.00 38.32 4.40
470 481 2.622452 GGAGCCCATAATCCCATCATGG 60.622 54.545 0.00 0.00 39.19 3.66
471 482 2.042026 TGGAGCCCATAATCCCATCATG 59.958 50.000 0.00 0.00 34.47 3.07
472 483 2.310945 CTGGAGCCCATAATCCCATCAT 59.689 50.000 0.00 0.00 34.47 2.45
481 492 2.589540 CGGTGCTGGAGCCCATAA 59.410 61.111 0.00 0.00 41.18 1.90
482 493 4.175337 GCGGTGCTGGAGCCCATA 62.175 66.667 0.00 0.00 41.18 2.74
487 498 2.578163 TATCACTGCGGTGCTGGAGC 62.578 60.000 21.33 0.00 42.72 4.70
497 508 3.363970 GGTCAAACACACTTATCACTGCG 60.364 47.826 0.00 0.00 0.00 5.18
498 509 3.563808 TGGTCAAACACACTTATCACTGC 59.436 43.478 0.00 0.00 0.00 4.40
499 510 5.749596 TTGGTCAAACACACTTATCACTG 57.250 39.130 0.00 0.00 0.00 3.66
525 536 0.751643 ATTTGCCACGTAGGATGGGC 60.752 55.000 5.43 5.43 46.58 5.36
528 539 3.270027 TCTTCATTTGCCACGTAGGATG 58.730 45.455 8.04 3.86 41.22 3.51
529 540 3.197766 TCTCTTCATTTGCCACGTAGGAT 59.802 43.478 8.04 0.00 41.22 3.24
551 562 3.555966 CCAGTTGGAAGTGGTTTTCTCT 58.444 45.455 5.22 0.00 43.18 3.10
560 571 1.247567 AAATCCGCCAGTTGGAAGTG 58.752 50.000 1.45 0.00 39.39 3.16
569 580 3.545703 ACCAGATCTAAAAATCCGCCAG 58.454 45.455 0.00 0.00 0.00 4.85
574 585 7.985476 TCATCGAAAACCAGATCTAAAAATCC 58.015 34.615 0.00 0.00 0.00 3.01
602 617 4.860352 TCGCAAGTCTCGAAATCGATTTAA 59.140 37.500 22.78 13.19 43.12 1.52
604 619 3.250744 TCGCAAGTCTCGAAATCGATTT 58.749 40.909 22.93 22.93 43.12 2.17
609 624 1.579808 CGTCTCGCAAGTCTCGAAATC 59.420 52.381 0.00 0.00 35.38 2.17
610 625 1.199327 TCGTCTCGCAAGTCTCGAAAT 59.801 47.619 0.00 0.00 35.38 2.17
614 629 1.618861 ATTTCGTCTCGCAAGTCTCG 58.381 50.000 0.00 0.00 39.48 4.04
616 631 3.307242 GCAATATTTCGTCTCGCAAGTCT 59.693 43.478 0.00 0.00 39.48 3.24
625 640 5.659440 ATTTGTTGGGCAATATTTCGTCT 57.341 34.783 0.00 0.00 36.89 4.18
636 651 3.464720 TCCCTCAATATTTGTTGGGCA 57.535 42.857 12.70 4.20 41.61 5.36
642 657 9.950496 GTATACATCAGATCCCTCAATATTTGT 57.050 33.333 0.00 0.00 0.00 2.83
653 668 5.470047 ACCGAAAGTATACATCAGATCCC 57.530 43.478 5.50 0.00 0.00 3.85
656 671 9.314321 CAAGTTTACCGAAAGTATACATCAGAT 57.686 33.333 5.50 0.00 35.88 2.90
657 672 8.525316 TCAAGTTTACCGAAAGTATACATCAGA 58.475 33.333 5.50 0.00 35.88 3.27
659 674 7.762615 CCTCAAGTTTACCGAAAGTATACATCA 59.237 37.037 5.50 0.00 35.88 3.07
663 678 5.292834 GCCCTCAAGTTTACCGAAAGTATAC 59.707 44.000 0.00 0.00 34.22 1.47
721 737 7.232534 ACACCATTGTAACTAAACACATGGAAT 59.767 33.333 17.35 8.05 38.70 3.01
760 784 1.154073 GAGACCGGACACGTACTGC 60.154 63.158 9.46 0.00 38.78 4.40
766 790 1.517257 GATGCAGAGACCGGACACG 60.517 63.158 9.46 0.00 40.55 4.49
851 884 4.351938 ACTTAGCGTGCCGTGCGA 62.352 61.111 0.00 0.00 37.44 5.10
866 899 0.699399 TCCGAGAGTTCTCCTGGACT 59.301 55.000 3.67 0.00 39.79 3.85
875 908 0.728542 GAGTCCGAGTCCGAGAGTTC 59.271 60.000 0.00 0.00 38.22 3.01
1119 1167 1.686236 ACCAGGATTTCCAGGACCAT 58.314 50.000 14.41 0.00 44.73 3.55
1459 1507 2.166346 TCCCAAAGGTGATGGCCCA 61.166 57.895 0.00 0.00 36.58 5.36
1473 1521 2.026729 TGAATTCCTTGTATGCGTCCCA 60.027 45.455 2.27 0.00 0.00 4.37
1532 1580 4.560743 TTGAGCGTGGGCAGCACA 62.561 61.111 0.00 0.00 43.41 4.57
1628 1703 0.981183 AGCAGGTTGATAACACCGGA 59.019 50.000 9.46 0.00 0.00 5.14
1685 1760 4.281657 AGATACTGTACTGCTGGTCATCA 58.718 43.478 0.00 0.00 0.00 3.07
1718 1793 0.466372 TCCAGCTCGACTCATCCGAT 60.466 55.000 0.00 0.00 35.35 4.18
1901 1976 0.668706 CCAGTGTGACCGAGAGCTTG 60.669 60.000 0.00 0.00 0.00 4.01
1959 2034 1.374252 CGTTGGTGACGCTTAGGCT 60.374 57.895 0.00 0.00 45.86 4.58
1960 2035 3.165498 CGTTGGTGACGCTTAGGC 58.835 61.111 0.00 0.00 45.86 3.93
2006 2081 5.988561 CCAGATCTGTACTCTTAGGCATTTC 59.011 44.000 21.11 0.00 0.00 2.17
2021 2096 1.753649 CCTCGACATGTCCAGATCTGT 59.246 52.381 20.58 2.16 0.00 3.41
2082 2157 4.083749 TCGTTCTAGCTCGATCATCTTAGC 60.084 45.833 0.00 1.47 35.16 3.09
2094 2169 0.524862 TGTTCCGGTCGTTCTAGCTC 59.475 55.000 0.00 0.00 0.00 4.09
2140 2215 3.711059 CTCTCCCCTGCCCACATGC 62.711 68.421 0.00 0.00 0.00 4.06
2204 2279 6.483687 GGTTTGAAGGTTAGCAACATATACG 58.516 40.000 0.00 0.00 0.00 3.06
2232 2307 1.142748 CGATGACCTCCTCCACTGC 59.857 63.158 0.00 0.00 0.00 4.40
2313 2388 2.320587 CGCCTGCCAAGTGAGACAC 61.321 63.158 0.00 0.00 34.10 3.67
2320 2395 0.533755 GATGCTATCGCCTGCCAAGT 60.534 55.000 0.00 0.00 34.43 3.16
2387 2462 4.894896 GCCCACTATTGGCCCCCG 62.895 72.222 0.00 0.00 43.33 5.73
2401 2476 5.123936 ACTGAACCGAAAATTATAGAGCCC 58.876 41.667 0.00 0.00 0.00 5.19
2404 2480 7.308782 AGCAACTGAACCGAAAATTATAGAG 57.691 36.000 0.00 0.00 0.00 2.43
2405 2481 8.826710 CATAGCAACTGAACCGAAAATTATAGA 58.173 33.333 0.00 0.00 0.00 1.98
2590 2837 7.147620 CCTCAAACTAATATACACACTACCCCA 60.148 40.741 0.00 0.00 0.00 4.96
2601 2848 8.438676 ACATTCTGCACCTCAAACTAATATAC 57.561 34.615 0.00 0.00 0.00 1.47
2659 2906 3.142174 AGCTCACCAAGTAAAGAAGCAC 58.858 45.455 0.00 0.00 0.00 4.40
2663 2910 6.605471 TCATCTAGCTCACCAAGTAAAGAA 57.395 37.500 0.00 0.00 0.00 2.52
2684 2931 5.376625 ACTAGACAAAACATCAAAGGCTCA 58.623 37.500 0.00 0.00 0.00 4.26
2734 2981 2.706555 TAGATAGCGGCGATTCACAG 57.293 50.000 12.98 0.00 0.00 3.66
2805 3052 2.584835 AGCAACCAAGATAGTGCCAA 57.415 45.000 0.00 0.00 0.00 4.52
2844 3091 5.069251 ACCTTGATATCTACTTCGTGGAAGG 59.931 44.000 9.89 6.90 43.25 3.46
2953 3200 1.538512 CTCCTGGTGCATGTTCAACTG 59.461 52.381 0.00 0.00 0.00 3.16
2968 3215 5.104776 TGAACCATTAACTCATCCTCTCCTG 60.105 44.000 0.00 0.00 0.00 3.86
2986 3233 0.539438 GCTCCCATTGGTGTGAACCA 60.539 55.000 1.20 0.00 38.14 3.67
3046 3293 1.252904 CCCTCCCACAACCATTGCTG 61.253 60.000 0.00 0.00 0.00 4.41
3047 3294 1.077265 CCCTCCCACAACCATTGCT 59.923 57.895 0.00 0.00 0.00 3.91
3048 3295 0.541764 TTCCCTCCCACAACCATTGC 60.542 55.000 0.00 0.00 0.00 3.56
3050 3297 0.409484 CCTTCCCTCCCACAACCATT 59.591 55.000 0.00 0.00 0.00 3.16
3051 3298 0.776080 ACCTTCCCTCCCACAACCAT 60.776 55.000 0.00 0.00 0.00 3.55
3052 3299 0.996762 AACCTTCCCTCCCACAACCA 60.997 55.000 0.00 0.00 0.00 3.67
3053 3300 0.251209 GAACCTTCCCTCCCACAACC 60.251 60.000 0.00 0.00 0.00 3.77
3054 3301 0.251209 GGAACCTTCCCTCCCACAAC 60.251 60.000 0.00 0.00 41.62 3.32
3055 3302 2.160646 GGAACCTTCCCTCCCACAA 58.839 57.895 0.00 0.00 41.62 3.33
3056 3303 3.916184 GGAACCTTCCCTCCCACA 58.084 61.111 0.00 0.00 41.62 4.17
3076 3323 4.096532 TCAAGCGTATTCCACACACAAAAA 59.903 37.500 0.00 0.00 0.00 1.94
3077 3324 3.628032 TCAAGCGTATTCCACACACAAAA 59.372 39.130 0.00 0.00 0.00 2.44
3078 3325 3.206964 TCAAGCGTATTCCACACACAAA 58.793 40.909 0.00 0.00 0.00 2.83
3079 3326 2.805671 CTCAAGCGTATTCCACACACAA 59.194 45.455 0.00 0.00 0.00 3.33
3080 3327 2.224185 ACTCAAGCGTATTCCACACACA 60.224 45.455 0.00 0.00 0.00 3.72
3081 3328 2.413837 ACTCAAGCGTATTCCACACAC 58.586 47.619 0.00 0.00 0.00 3.82
3082 3329 2.831685 ACTCAAGCGTATTCCACACA 57.168 45.000 0.00 0.00 0.00 3.72
3083 3330 3.001330 GCATACTCAAGCGTATTCCACAC 59.999 47.826 0.00 0.00 0.00 3.82
3084 3331 3.194861 GCATACTCAAGCGTATTCCACA 58.805 45.455 0.00 0.00 0.00 4.17
3085 3332 3.861569 GCATACTCAAGCGTATTCCAC 57.138 47.619 0.00 0.00 0.00 4.02
3093 3340 8.307882 TCAATAGATGATACGCATACTCAAGCG 61.308 40.741 5.18 5.18 45.83 4.68
3094 3341 6.808704 TCAATAGATGATACGCATACTCAAGC 59.191 38.462 0.00 0.00 37.34 4.01
3109 3356 6.276806 ACCCTCTCCTCTCTATCAATAGATGA 59.723 42.308 0.34 1.20 43.67 2.92
3110 3357 6.493166 ACCCTCTCCTCTCTATCAATAGATG 58.507 44.000 0.34 0.00 38.60 2.90
3111 3358 6.734918 ACCCTCTCCTCTCTATCAATAGAT 57.265 41.667 0.34 0.00 38.60 1.98
3112 3359 7.026247 TCTACCCTCTCCTCTCTATCAATAGA 58.974 42.308 0.09 0.09 37.76 1.98
3113 3360 7.265599 TCTACCCTCTCCTCTCTATCAATAG 57.734 44.000 0.00 0.00 0.00 1.73
3114 3361 7.517953 TCTTCTACCCTCTCCTCTCTATCAATA 59.482 40.741 0.00 0.00 0.00 1.90
3115 3362 6.334237 TCTTCTACCCTCTCCTCTCTATCAAT 59.666 42.308 0.00 0.00 0.00 2.57
3116 3363 5.672653 TCTTCTACCCTCTCCTCTCTATCAA 59.327 44.000 0.00 0.00 0.00 2.57
3117 3364 5.228383 TCTTCTACCCTCTCCTCTCTATCA 58.772 45.833 0.00 0.00 0.00 2.15
3118 3365 5.836024 TCTTCTACCCTCTCCTCTCTATC 57.164 47.826 0.00 0.00 0.00 2.08
3119 3366 6.796867 ATTCTTCTACCCTCTCCTCTCTAT 57.203 41.667 0.00 0.00 0.00 1.98
3120 3367 6.044637 GGTATTCTTCTACCCTCTCCTCTCTA 59.955 46.154 0.00 0.00 36.00 2.43
3121 3368 5.163023 GGTATTCTTCTACCCTCTCCTCTCT 60.163 48.000 0.00 0.00 36.00 3.10
3122 3369 5.074804 GGTATTCTTCTACCCTCTCCTCTC 58.925 50.000 0.00 0.00 36.00 3.20
3123 3370 5.069518 GGTATTCTTCTACCCTCTCCTCT 57.930 47.826 0.00 0.00 36.00 3.69
3132 3379 1.540580 GCAGGCGGGTATTCTTCTACC 60.541 57.143 0.00 0.00 40.46 3.18
3133 3380 1.138266 TGCAGGCGGGTATTCTTCTAC 59.862 52.381 0.00 0.00 0.00 2.59
3134 3381 1.412710 CTGCAGGCGGGTATTCTTCTA 59.587 52.381 5.57 0.00 0.00 2.10
3135 3382 0.179000 CTGCAGGCGGGTATTCTTCT 59.821 55.000 5.57 0.00 0.00 2.85
3136 3383 0.178068 TCTGCAGGCGGGTATTCTTC 59.822 55.000 15.13 0.00 0.00 2.87
3137 3384 0.179000 CTCTGCAGGCGGGTATTCTT 59.821 55.000 15.13 0.00 0.00 2.52
3138 3385 0.978146 ACTCTGCAGGCGGGTATTCT 60.978 55.000 15.13 0.00 0.00 2.40
3139 3386 0.107654 AACTCTGCAGGCGGGTATTC 60.108 55.000 15.13 0.00 0.00 1.75
3140 3387 1.134491 GTAACTCTGCAGGCGGGTATT 60.134 52.381 15.13 1.02 0.00 1.89
3141 3388 0.464452 GTAACTCTGCAGGCGGGTAT 59.536 55.000 15.13 0.00 0.00 2.73
3142 3389 0.901114 TGTAACTCTGCAGGCGGGTA 60.901 55.000 15.13 4.95 0.00 3.69
3143 3390 1.553690 ATGTAACTCTGCAGGCGGGT 61.554 55.000 15.13 5.97 0.00 5.28
3144 3391 0.811616 GATGTAACTCTGCAGGCGGG 60.812 60.000 15.13 4.71 0.00 6.13
3145 3392 1.148157 CGATGTAACTCTGCAGGCGG 61.148 60.000 15.13 7.27 0.00 6.13
3146 3393 0.458543 ACGATGTAACTCTGCAGGCG 60.459 55.000 15.13 8.14 0.00 5.52
3147 3394 1.726853 AACGATGTAACTCTGCAGGC 58.273 50.000 15.13 0.24 0.00 4.85
3148 3395 3.845178 TGTAACGATGTAACTCTGCAGG 58.155 45.455 15.13 7.28 0.00 4.85
3149 3396 3.304559 GCTGTAACGATGTAACTCTGCAG 59.695 47.826 7.63 7.63 0.00 4.41
3150 3397 3.250744 GCTGTAACGATGTAACTCTGCA 58.749 45.455 0.00 0.00 0.00 4.41
3151 3398 2.603560 GGCTGTAACGATGTAACTCTGC 59.396 50.000 0.00 0.00 0.00 4.26
3152 3399 3.187700 GGGCTGTAACGATGTAACTCTG 58.812 50.000 0.00 0.00 0.00 3.35
3153 3400 2.829720 TGGGCTGTAACGATGTAACTCT 59.170 45.455 0.00 0.00 0.00 3.24
3154 3401 3.187700 CTGGGCTGTAACGATGTAACTC 58.812 50.000 0.00 0.00 0.00 3.01
3155 3402 2.093658 CCTGGGCTGTAACGATGTAACT 60.094 50.000 0.00 0.00 0.00 2.24
3156 3403 2.277084 CCTGGGCTGTAACGATGTAAC 58.723 52.381 0.00 0.00 0.00 2.50
3157 3404 1.903860 ACCTGGGCTGTAACGATGTAA 59.096 47.619 0.00 0.00 0.00 2.41
3158 3405 1.563924 ACCTGGGCTGTAACGATGTA 58.436 50.000 0.00 0.00 0.00 2.29
3159 3406 1.206371 GTACCTGGGCTGTAACGATGT 59.794 52.381 0.00 0.00 0.00 3.06
3160 3407 1.801395 CGTACCTGGGCTGTAACGATG 60.801 57.143 0.00 0.00 0.00 3.84
3161 3408 0.458669 CGTACCTGGGCTGTAACGAT 59.541 55.000 0.00 0.00 0.00 3.73
3162 3409 1.597797 CCGTACCTGGGCTGTAACGA 61.598 60.000 0.00 0.00 0.00 3.85
3163 3410 1.153706 CCGTACCTGGGCTGTAACG 60.154 63.158 0.00 0.00 0.00 3.18
3164 3411 1.219935 CCCGTACCTGGGCTGTAAC 59.780 63.158 0.00 0.00 43.70 2.50
3165 3412 3.716381 CCCGTACCTGGGCTGTAA 58.284 61.111 0.00 0.00 43.70 2.41
3172 3419 2.750237 GCCTTTGCCCGTACCTGG 60.750 66.667 0.00 0.00 0.00 4.45
3189 3436 1.036707 TTTTTGTTTCCGGCCTCTGG 58.963 50.000 0.00 0.00 0.00 3.86
3205 3452 0.672711 GCGGGGAGACGTAGCTTTTT 60.673 55.000 0.00 0.00 35.98 1.94
3206 3453 1.079336 GCGGGGAGACGTAGCTTTT 60.079 57.895 0.00 0.00 35.98 2.27
3207 3454 1.946475 GAGCGGGGAGACGTAGCTTT 61.946 60.000 0.00 0.00 38.39 3.51
3208 3455 2.362632 AGCGGGGAGACGTAGCTT 60.363 61.111 0.00 0.00 34.05 3.74
3209 3456 2.829458 GAGCGGGGAGACGTAGCT 60.829 66.667 0.00 0.00 41.29 3.32
3210 3457 3.138798 TGAGCGGGGAGACGTAGC 61.139 66.667 0.00 0.00 35.98 3.58
3211 3458 2.772691 GGTGAGCGGGGAGACGTAG 61.773 68.421 0.00 0.00 35.98 3.51
3212 3459 2.753043 GGTGAGCGGGGAGACGTA 60.753 66.667 0.00 0.00 35.98 3.57
3224 3471 3.302347 GAGTGGACAGGCGGGTGAG 62.302 68.421 0.00 0.00 0.00 3.51
3225 3472 2.435120 TAGAGTGGACAGGCGGGTGA 62.435 60.000 0.00 0.00 0.00 4.02
3226 3473 1.949847 CTAGAGTGGACAGGCGGGTG 61.950 65.000 0.00 0.00 0.00 4.61
3227 3474 1.682684 CTAGAGTGGACAGGCGGGT 60.683 63.158 0.00 0.00 0.00 5.28
3228 3475 3.082579 GCTAGAGTGGACAGGCGGG 62.083 68.421 0.00 0.00 0.00 6.13
3229 3476 0.752009 TAGCTAGAGTGGACAGGCGG 60.752 60.000 0.00 0.00 0.00 6.13
3230 3477 1.103803 TTAGCTAGAGTGGACAGGCG 58.896 55.000 0.00 0.00 0.00 5.52
3231 3478 1.137282 GGTTAGCTAGAGTGGACAGGC 59.863 57.143 0.00 0.00 0.00 4.85
3232 3479 2.457598 TGGTTAGCTAGAGTGGACAGG 58.542 52.381 0.00 0.00 0.00 4.00
3233 3480 4.688021 GATTGGTTAGCTAGAGTGGACAG 58.312 47.826 0.00 0.00 0.00 3.51
3234 3481 3.130516 CGATTGGTTAGCTAGAGTGGACA 59.869 47.826 0.00 0.00 0.00 4.02
3235 3482 3.707793 CGATTGGTTAGCTAGAGTGGAC 58.292 50.000 0.00 0.00 0.00 4.02
3236 3483 2.100916 GCGATTGGTTAGCTAGAGTGGA 59.899 50.000 0.00 0.00 0.00 4.02
3237 3484 2.101582 AGCGATTGGTTAGCTAGAGTGG 59.898 50.000 0.00 0.00 39.74 4.00
3238 3485 3.181486 TGAGCGATTGGTTAGCTAGAGTG 60.181 47.826 0.00 0.00 41.84 3.51
3239 3486 3.024547 TGAGCGATTGGTTAGCTAGAGT 58.975 45.455 0.00 0.00 41.84 3.24
3240 3487 3.717400 TGAGCGATTGGTTAGCTAGAG 57.283 47.619 0.00 0.00 41.84 2.43
3241 3488 3.384789 ACATGAGCGATTGGTTAGCTAGA 59.615 43.478 0.00 0.00 41.84 2.43
3242 3489 3.722147 ACATGAGCGATTGGTTAGCTAG 58.278 45.455 0.00 0.00 41.84 3.42
3243 3490 3.717707 GACATGAGCGATTGGTTAGCTA 58.282 45.455 0.00 0.00 41.84 3.32
3244 3491 2.555199 GACATGAGCGATTGGTTAGCT 58.445 47.619 0.00 0.00 44.80 3.32
3245 3492 1.258982 CGACATGAGCGATTGGTTAGC 59.741 52.381 0.00 0.00 0.00 3.09
3246 3493 1.258982 GCGACATGAGCGATTGGTTAG 59.741 52.381 14.93 0.00 0.00 2.34
3247 3494 1.134818 AGCGACATGAGCGATTGGTTA 60.135 47.619 14.93 0.00 40.04 2.85
3248 3495 0.391661 AGCGACATGAGCGATTGGTT 60.392 50.000 14.93 0.00 40.04 3.67
3249 3496 0.459899 TAGCGACATGAGCGATTGGT 59.540 50.000 14.93 0.00 40.04 3.67
3250 3497 1.458445 CATAGCGACATGAGCGATTGG 59.542 52.381 14.93 3.13 40.04 3.16
3251 3498 2.397549 TCATAGCGACATGAGCGATTG 58.602 47.619 14.93 11.77 40.04 2.67
3252 3499 2.800881 TCATAGCGACATGAGCGATT 57.199 45.000 14.93 6.28 40.04 3.34
3253 3500 2.800881 TTCATAGCGACATGAGCGAT 57.199 45.000 14.93 11.64 36.34 4.58
3254 3501 2.099098 TCTTTCATAGCGACATGAGCGA 59.901 45.455 14.93 9.42 36.34 4.93
3255 3502 2.463876 TCTTTCATAGCGACATGAGCG 58.536 47.619 0.00 3.83 36.34 5.03
3256 3503 3.001736 GGTTCTTTCATAGCGACATGAGC 59.998 47.826 0.00 4.59 36.34 4.26
3257 3504 3.557595 GGGTTCTTTCATAGCGACATGAG 59.442 47.826 0.00 0.00 36.34 2.90
3258 3505 3.197766 AGGGTTCTTTCATAGCGACATGA 59.802 43.478 0.00 0.00 33.10 3.07
3259 3506 3.310774 CAGGGTTCTTTCATAGCGACATG 59.689 47.826 0.00 0.00 0.00 3.21
3260 3507 3.535561 CAGGGTTCTTTCATAGCGACAT 58.464 45.455 0.00 0.00 0.00 3.06
3261 3508 2.935238 GCAGGGTTCTTTCATAGCGACA 60.935 50.000 0.00 0.00 0.00 4.35
3262 3509 1.666189 GCAGGGTTCTTTCATAGCGAC 59.334 52.381 0.00 0.00 0.00 5.19
3263 3510 1.277842 TGCAGGGTTCTTTCATAGCGA 59.722 47.619 0.00 0.00 0.00 4.93
3264 3511 1.737838 TGCAGGGTTCTTTCATAGCG 58.262 50.000 0.00 0.00 0.00 4.26
3265 3512 3.347216 TCTTGCAGGGTTCTTTCATAGC 58.653 45.455 0.00 0.00 0.00 2.97
3266 3513 4.156739 GGTTCTTGCAGGGTTCTTTCATAG 59.843 45.833 0.00 0.00 0.00 2.23
3267 3514 4.079253 GGTTCTTGCAGGGTTCTTTCATA 58.921 43.478 0.00 0.00 0.00 2.15
3279 3674 1.467920 GAGGGAATGGGTTCTTGCAG 58.532 55.000 0.00 0.00 34.68 4.41
3296 3691 0.458543 CTCATCGTGAACGTGGGGAG 60.459 60.000 2.37 2.84 40.80 4.30
3337 3732 3.621268 TCATTTTCAATAACGCCTCTCCG 59.379 43.478 0.00 0.00 0.00 4.63
3351 3746 0.871722 CCAGAACGCGGTCATTTTCA 59.128 50.000 28.31 0.00 0.00 2.69
3369 3764 0.038166 TTGGGAGATGTGGAAGCACC 59.962 55.000 0.00 0.00 39.54 5.01
3394 3789 2.434884 AACACCCTCGCGATGCTG 60.435 61.111 10.36 7.26 0.00 4.41
3417 3812 1.971695 GGCCAACGGACCAGGAAAG 60.972 63.158 0.00 0.00 0.00 2.62
3418 3813 2.114411 GGCCAACGGACCAGGAAA 59.886 61.111 0.00 0.00 0.00 3.13
3442 3837 1.375853 TACATTGGTGCATGGCGCTC 61.376 55.000 7.64 0.00 43.06 5.03
3449 3844 4.142622 CGATCAGTTGTTACATTGGTGCAT 60.143 41.667 0.00 0.00 0.00 3.96
3467 3862 4.770362 TCCGGGGCTGGACGATCA 62.770 66.667 0.00 0.00 31.53 2.92
3492 3887 1.463214 TTGGCCTTGGGTCAGGAGA 60.463 57.895 3.32 0.00 39.05 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.