Multiple sequence alignment - TraesCS1D01G358400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G358400 chr1D 100.000 3426 0 0 1 3426 442049614 442053039 0.000000e+00 6327.0
1 TraesCS1D01G358400 chr1D 93.018 444 18 11 1169 1602 441750354 441750794 1.340000e-178 636.0
2 TraesCS1D01G358400 chr1D 84.959 492 44 19 2940 3426 442067602 442068068 4.000000e-129 472.0
3 TraesCS1D01G358400 chr1D 91.346 104 9 0 1805 1908 441750977 441751080 3.560000e-30 143.0
4 TraesCS1D01G358400 chr1D 91.803 61 5 0 1651 1711 441750804 441750864 6.090000e-13 86.1
5 TraesCS1D01G358400 chr1D 100.000 35 0 0 931 965 442050479 442050513 7.940000e-07 65.8
6 TraesCS1D01G358400 chr1D 100.000 35 0 0 866 900 442050544 442050578 7.940000e-07 65.8
7 TraesCS1D01G358400 chr1B 84.647 1928 124 58 113 1933 600602218 600604080 0.000000e+00 1762.0
8 TraesCS1D01G358400 chr1B 87.281 912 73 26 1928 2828 600604296 600605175 0.000000e+00 1002.0
9 TraesCS1D01G358400 chr1B 88.163 490 41 10 2939 3424 600666744 600667220 4.960000e-158 568.0
10 TraesCS1D01G358400 chr1B 90.960 354 28 2 1162 1515 600258307 600258656 1.110000e-129 473.0
11 TraesCS1D01G358400 chr1B 89.859 355 25 8 1169 1522 600022922 600023266 2.430000e-121 446.0
12 TraesCS1D01G358400 chr1B 87.179 351 33 6 1169 1516 600523689 600524030 4.150000e-104 388.0
13 TraesCS1D01G358400 chr1B 84.548 343 40 9 1805 2139 600024709 600025046 9.170000e-86 327.0
14 TraesCS1D01G358400 chr1B 81.020 353 38 20 3053 3396 600605347 600605679 1.580000e-63 254.0
15 TraesCS1D01G358400 chr1B 92.941 170 11 1 1968 2136 600524429 600524598 2.640000e-61 246.0
16 TraesCS1D01G358400 chr1B 78.917 351 48 12 1794 2140 600259137 600259465 7.450000e-52 215.0
17 TraesCS1D01G358400 chr1B 90.260 154 14 1 1987 2139 600329708 600329861 2.090000e-47 200.0
18 TraesCS1D01G358400 chr1B 96.970 66 2 0 2939 3004 600884680 600884745 1.010000e-20 111.0
19 TraesCS1D01G358400 chr1B 98.182 55 1 0 1 55 139430672 139430726 2.810000e-16 97.1
20 TraesCS1D01G358400 chr1B 98.182 55 1 0 1 55 239163568 239163622 2.810000e-16 97.1
21 TraesCS1D01G358400 chr1B 93.651 63 4 0 1651 1713 600023361 600023423 1.010000e-15 95.3
22 TraesCS1D01G358400 chr1B 92.105 38 2 1 2903 2939 600884626 600884663 6.000000e-03 52.8
23 TraesCS1D01G358400 chr1A 89.024 492 46 5 2939 3426 536604095 536603608 1.360000e-168 603.0
24 TraesCS1D01G358400 chr1A 81.496 508 68 17 2938 3426 536609041 536608541 8.910000e-106 394.0
25 TraesCS1D01G358400 chr1A 94.444 198 10 1 1326 1522 536614725 536614528 1.540000e-78 303.0
26 TraesCS1D01G358400 chr1A 83.146 356 34 9 1805 2158 536614257 536613926 5.560000e-78 302.0
27 TraesCS1D01G358400 chr1A 98.901 91 1 0 1169 1259 536614975 536614885 2.740000e-36 163.0
28 TraesCS1D01G358400 chr1A 92.857 56 4 0 1656 1711 536614422 536614367 7.880000e-12 82.4
29 TraesCS1D01G358400 chr4D 84.444 360 35 11 1169 1515 247514547 247514898 5.480000e-88 335.0
30 TraesCS1D01G358400 chr7B 95.135 185 9 0 1334 1518 629481434 629481250 3.340000e-75 292.0
31 TraesCS1D01G358400 chr7B 95.082 61 3 0 1 61 390953945 390953885 2.810000e-16 97.1
32 TraesCS1D01G358400 chr4A 83.136 338 40 13 1169 1495 325922974 325922643 3.340000e-75 292.0
33 TraesCS1D01G358400 chr7D 93.137 102 7 0 1169 1270 23480594 23480695 2.130000e-32 150.0
34 TraesCS1D01G358400 chr4B 92.157 102 8 0 1169 1270 231363066 231363167 9.910000e-31 145.0
35 TraesCS1D01G358400 chr4B 95.000 60 3 0 2 61 380571123 380571064 1.010000e-15 95.3
36 TraesCS1D01G358400 chr6B 95.082 61 3 0 1 61 171570638 171570578 2.810000e-16 97.1
37 TraesCS1D01G358400 chr6B 98.182 55 1 0 1 55 406445436 406445490 2.810000e-16 97.1
38 TraesCS1D01G358400 chr6B 95.082 61 3 0 1 61 566674900 566674840 2.810000e-16 97.1
39 TraesCS1D01G358400 chr6B 95.000 60 3 0 2 61 211268085 211268026 1.010000e-15 95.3
40 TraesCS1D01G358400 chr3B 95.082 61 3 0 1 61 321687751 321687811 2.810000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G358400 chr1D 442049614 442053039 3425 False 2152.866667 6327 100.000000 1 3426 3 chr1D.!!$F3 3425
1 TraesCS1D01G358400 chr1D 441750354 441751080 726 False 288.366667 636 92.055667 1169 1908 3 chr1D.!!$F2 739
2 TraesCS1D01G358400 chr1B 600602218 600605679 3461 False 1006.000000 1762 84.316000 113 3396 3 chr1B.!!$F8 3283
3 TraesCS1D01G358400 chr1B 600258307 600259465 1158 False 344.000000 473 84.938500 1162 2140 2 chr1B.!!$F6 978
4 TraesCS1D01G358400 chr1B 600523689 600524598 909 False 317.000000 388 90.060000 1169 2136 2 chr1B.!!$F7 967
5 TraesCS1D01G358400 chr1B 600022922 600025046 2124 False 289.433333 446 89.352667 1169 2139 3 chr1B.!!$F5 970
6 TraesCS1D01G358400 chr1A 536608541 536609041 500 True 394.000000 394 81.496000 2938 3426 1 chr1A.!!$R2 488
7 TraesCS1D01G358400 chr1A 536613926 536614975 1049 True 212.600000 303 92.337000 1169 2158 4 chr1A.!!$R3 989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 984 0.035317 CTGTGGCCTGTAGAGTGCAA 59.965 55.0 3.32 0.0 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2909 4753 0.035915 GTCTCCAAGGTCAAGCTCCC 60.036 60.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.450578 AAAAGGAAGCAAAATTTAAGAAAGGG 57.549 30.769 0.00 0.00 0.00 3.95
41 42 5.551233 AGGAAGCAAAATTTAAGAAAGGGC 58.449 37.500 0.00 0.00 0.00 5.19
42 43 4.695455 GGAAGCAAAATTTAAGAAAGGGCC 59.305 41.667 0.00 0.00 0.00 5.80
43 44 4.972751 AGCAAAATTTAAGAAAGGGCCA 57.027 36.364 6.18 0.00 0.00 5.36
44 45 5.303259 AGCAAAATTTAAGAAAGGGCCAA 57.697 34.783 6.18 0.00 0.00 4.52
45 46 5.689835 AGCAAAATTTAAGAAAGGGCCAAA 58.310 33.333 6.18 0.00 0.00 3.28
46 47 6.306199 AGCAAAATTTAAGAAAGGGCCAAAT 58.694 32.000 6.18 0.00 0.00 2.32
47 48 7.457561 AGCAAAATTTAAGAAAGGGCCAAATA 58.542 30.769 6.18 0.00 0.00 1.40
48 49 7.941790 AGCAAAATTTAAGAAAGGGCCAAATAA 59.058 29.630 6.18 0.00 0.00 1.40
49 50 8.572185 GCAAAATTTAAGAAAGGGCCAAATAAA 58.428 29.630 6.18 4.49 0.00 1.40
57 58 7.984422 AGAAAGGGCCAAATAAAGAATTTTG 57.016 32.000 6.18 0.00 40.09 2.44
58 59 7.517320 AGAAAGGGCCAAATAAAGAATTTTGT 58.483 30.769 6.18 0.00 40.09 2.83
59 60 7.661437 AGAAAGGGCCAAATAAAGAATTTTGTC 59.339 33.333 6.18 0.00 40.09 3.18
60 61 5.804639 AGGGCCAAATAAAGAATTTTGTCC 58.195 37.500 6.18 0.00 42.59 4.02
61 62 4.941263 GGGCCAAATAAAGAATTTTGTCCC 59.059 41.667 4.39 0.00 38.47 4.46
62 63 5.513962 GGGCCAAATAAAGAATTTTGTCCCA 60.514 40.000 4.39 0.00 38.47 4.37
63 64 6.000840 GGCCAAATAAAGAATTTTGTCCCAA 58.999 36.000 0.00 0.00 40.09 4.12
64 65 6.488344 GGCCAAATAAAGAATTTTGTCCCAAA 59.512 34.615 0.00 0.00 40.09 3.28
65 66 7.013750 GGCCAAATAAAGAATTTTGTCCCAAAA 59.986 33.333 0.00 4.76 40.09 2.44
66 67 8.075574 GCCAAATAAAGAATTTTGTCCCAAAAG 58.924 33.333 8.00 0.00 40.09 2.27
67 68 8.075574 CCAAATAAAGAATTTTGTCCCAAAAGC 58.924 33.333 8.00 3.57 40.09 3.51
68 69 7.420184 AATAAAGAATTTTGTCCCAAAAGCG 57.580 32.000 8.00 0.00 40.09 4.68
69 70 4.400529 AAGAATTTTGTCCCAAAAGCGT 57.599 36.364 8.00 0.01 0.00 5.07
70 71 3.977427 AGAATTTTGTCCCAAAAGCGTC 58.023 40.909 8.00 5.71 0.00 5.19
71 72 2.812358 ATTTTGTCCCAAAAGCGTCC 57.188 45.000 8.00 0.00 0.00 4.79
72 73 0.382515 TTTTGTCCCAAAAGCGTCCG 59.617 50.000 0.00 0.00 0.00 4.79
73 74 2.065906 TTTGTCCCAAAAGCGTCCGC 62.066 55.000 2.94 2.94 42.33 5.54
214 221 6.101650 AGGAAAAAGGAGCATTTTGGTTAG 57.898 37.500 0.00 0.00 32.81 2.34
215 222 5.838521 AGGAAAAAGGAGCATTTTGGTTAGA 59.161 36.000 0.00 0.00 32.81 2.10
217 224 6.989759 GGAAAAAGGAGCATTTTGGTTAGAAA 59.010 34.615 0.00 0.00 32.81 2.52
220 227 6.581171 AAGGAGCATTTTGGTTAGAAAGAG 57.419 37.500 0.00 0.00 0.00 2.85
221 228 5.012893 AGGAGCATTTTGGTTAGAAAGAGG 58.987 41.667 0.00 0.00 0.00 3.69
222 229 4.158579 GGAGCATTTTGGTTAGAAAGAGGG 59.841 45.833 0.00 0.00 0.00 4.30
299 310 2.361104 GAGCCCCCGTGCAATCAA 60.361 61.111 0.00 0.00 0.00 2.57
437 464 3.186047 CGCGTCATCCCGTGAACC 61.186 66.667 0.00 0.00 40.64 3.62
475 502 1.745489 GAACTCCTTTCCGCGCCAT 60.745 57.895 0.00 0.00 0.00 4.40
494 526 4.159506 GCCATCCTTTTATTTACCACAGCA 59.840 41.667 0.00 0.00 0.00 4.41
495 527 5.679638 GCCATCCTTTTATTTACCACAGCAG 60.680 44.000 0.00 0.00 0.00 4.24
497 529 4.402829 TCCTTTTATTTACCACAGCAGCA 58.597 39.130 0.00 0.00 0.00 4.41
498 530 4.458989 TCCTTTTATTTACCACAGCAGCAG 59.541 41.667 0.00 0.00 0.00 4.24
499 531 3.848272 TTTATTTACCACAGCAGCAGC 57.152 42.857 0.00 0.00 42.56 5.25
612 664 2.476534 AAGCCATTTGACTTGCCGCG 62.477 55.000 0.00 0.00 0.00 6.46
614 666 2.254951 CATTTGACTTGCCGCGCA 59.745 55.556 8.75 0.00 36.47 6.09
671 723 2.758736 CCCAGAGGTTGAGAGTTGAG 57.241 55.000 0.00 0.00 0.00 3.02
672 724 2.251818 CCCAGAGGTTGAGAGTTGAGA 58.748 52.381 0.00 0.00 0.00 3.27
673 725 2.028567 CCCAGAGGTTGAGAGTTGAGAC 60.029 54.545 0.00 0.00 0.00 3.36
686 738 2.614057 AGTTGAGACGCAAAGACAAAGG 59.386 45.455 0.00 0.00 38.44 3.11
721 781 4.500116 GAGGACGGACGGAGCAGC 62.500 72.222 0.00 0.00 0.00 5.25
751 811 3.119319 AGATCTTTCTCTTCCCCCTTCC 58.881 50.000 0.00 0.00 0.00 3.46
765 825 1.603455 CTTCCTTCCGGCCAAAGCA 60.603 57.895 2.24 0.00 42.56 3.91
766 826 1.589716 CTTCCTTCCGGCCAAAGCAG 61.590 60.000 2.24 1.09 42.56 4.24
767 827 3.752339 CCTTCCGGCCAAAGCAGC 61.752 66.667 2.24 0.00 42.56 5.25
768 828 2.985282 CTTCCGGCCAAAGCAGCA 60.985 61.111 2.24 0.00 42.56 4.41
769 829 3.273080 CTTCCGGCCAAAGCAGCAC 62.273 63.158 2.24 0.00 42.56 4.40
774 834 4.712425 GCCAAAGCAGCACCGCAG 62.712 66.667 0.00 0.00 39.53 5.18
794 854 2.034221 GGCAGGGTTGGACACTCC 59.966 66.667 0.00 0.00 36.96 3.85
818 882 1.216710 CTTCGCCTCAGGTCAGTCC 59.783 63.158 0.00 0.00 0.00 3.85
821 885 2.418910 CGCCTCAGGTCAGTCCGAT 61.419 63.158 0.00 0.00 41.99 4.18
822 886 1.901085 GCCTCAGGTCAGTCCGATT 59.099 57.895 0.00 0.00 41.99 3.34
823 887 0.460987 GCCTCAGGTCAGTCCGATTG 60.461 60.000 0.00 0.00 41.99 2.67
824 888 0.460987 CCTCAGGTCAGTCCGATTGC 60.461 60.000 0.00 0.00 41.99 3.56
848 912 0.814457 TTGCTGTTTTCGTGCTGGTT 59.186 45.000 0.00 0.00 0.00 3.67
849 913 1.669604 TGCTGTTTTCGTGCTGGTTA 58.330 45.000 0.00 0.00 0.00 2.85
850 914 2.226330 TGCTGTTTTCGTGCTGGTTAT 58.774 42.857 0.00 0.00 0.00 1.89
899 963 2.028190 CGATCGATCGGCTTGGCT 59.972 61.111 34.54 0.00 45.93 4.75
902 966 1.493950 GATCGATCGGCTTGGCTGTG 61.494 60.000 16.41 0.00 36.18 3.66
903 967 2.930385 ATCGATCGGCTTGGCTGTGG 62.930 60.000 16.41 0.00 36.18 4.17
904 968 3.512516 GATCGGCTTGGCTGTGGC 61.513 66.667 0.00 0.00 36.18 5.01
917 984 0.035317 CTGTGGCCTGTAGAGTGCAA 59.965 55.000 3.32 0.00 0.00 4.08
918 985 0.035317 TGTGGCCTGTAGAGTGCAAG 59.965 55.000 3.32 0.00 0.00 4.01
922 989 1.484240 GGCCTGTAGAGTGCAAGATCT 59.516 52.381 0.00 0.00 0.00 2.75
1017 1087 1.965930 GATGGGCTGCGTGTTGTCA 60.966 57.895 0.00 0.00 0.00 3.58
1110 1180 1.008327 TCAGCCCATACTCCTCCTTGA 59.992 52.381 0.00 0.00 0.00 3.02
1115 1185 3.748989 GCCCATACTCCTCCTTGATTTCC 60.749 52.174 0.00 0.00 0.00 3.13
1117 1187 4.202409 CCCATACTCCTCCTTGATTTCCTC 60.202 50.000 0.00 0.00 0.00 3.71
1119 1189 5.454471 CCATACTCCTCCTTGATTTCCTCTG 60.454 48.000 0.00 0.00 0.00 3.35
1120 1190 3.525862 ACTCCTCCTTGATTTCCTCTGT 58.474 45.455 0.00 0.00 0.00 3.41
1121 1191 4.689062 ACTCCTCCTTGATTTCCTCTGTA 58.311 43.478 0.00 0.00 0.00 2.74
1122 1192 4.468153 ACTCCTCCTTGATTTCCTCTGTAC 59.532 45.833 0.00 0.00 0.00 2.90
1123 1193 4.689062 TCCTCCTTGATTTCCTCTGTACT 58.311 43.478 0.00 0.00 0.00 2.73
1124 1194 5.838955 TCCTCCTTGATTTCCTCTGTACTA 58.161 41.667 0.00 0.00 0.00 1.82
1125 1195 5.657302 TCCTCCTTGATTTCCTCTGTACTAC 59.343 44.000 0.00 0.00 0.00 2.73
1127 1197 5.590818 TCCTTGATTTCCTCTGTACTACCT 58.409 41.667 0.00 0.00 0.00 3.08
1129 1199 5.422331 CCTTGATTTCCTCTGTACTACCTCA 59.578 44.000 0.00 0.00 0.00 3.86
1149 1222 4.005650 TCAACTGAATGGAAGCTCATGTC 58.994 43.478 0.00 0.00 0.00 3.06
1538 1744 1.103803 CCTACGCCTCTTGTCTGCTA 58.896 55.000 0.00 0.00 0.00 3.49
1556 1762 4.245660 TGCTAGTCTTTTCTGTCCATTCG 58.754 43.478 0.00 0.00 0.00 3.34
1569 1780 1.272490 TCCATTCGTCGTCTTTGCTCT 59.728 47.619 0.00 0.00 0.00 4.09
1752 2588 5.104374 CACCTTATTTGCATTGTCCATGAC 58.896 41.667 0.00 0.00 34.31 3.06
1759 3232 2.779430 TGCATTGTCCATGACCTATCCT 59.221 45.455 0.00 0.00 34.31 3.24
1760 3233 3.144506 GCATTGTCCATGACCTATCCTG 58.855 50.000 0.00 0.00 34.31 3.86
1761 3234 3.181451 GCATTGTCCATGACCTATCCTGA 60.181 47.826 0.00 0.00 34.31 3.86
1789 3262 2.229792 TGGTGAACTGATTGCCTCAAC 58.770 47.619 0.00 0.00 32.14 3.18
1790 3263 2.158623 TGGTGAACTGATTGCCTCAACT 60.159 45.455 0.00 0.00 32.14 3.16
1791 3264 2.227388 GGTGAACTGATTGCCTCAACTG 59.773 50.000 0.00 0.00 32.14 3.16
1796 3269 3.290710 ACTGATTGCCTCAACTGTTGTT 58.709 40.909 19.12 0.60 36.75 2.83
1831 3304 1.078143 GGAGATGGTGGTGGCACTC 60.078 63.158 18.45 10.85 0.00 3.51
1919 3396 9.469807 GTGACCAACAAGATAGATAGATACTTG 57.530 37.037 0.00 0.00 42.11 3.16
1942 3640 8.948631 TTGTCTCCATGTATTTATTCAGTCTC 57.051 34.615 0.00 0.00 0.00 3.36
1983 3718 9.691362 TTTCTTGTTTTCCTTCTAATAACATGC 57.309 29.630 0.00 0.00 0.00 4.06
2045 3781 0.737715 AAGCAGACTCGAATGGCGAC 60.738 55.000 0.00 0.00 45.59 5.19
2141 3879 4.522405 CCCTATCTCCAGTGAGTACTCATG 59.478 50.000 27.54 22.91 42.18 3.07
2185 3923 3.248024 TCAGGCTCTCCAAGTTCCTTTA 58.752 45.455 0.00 0.00 33.74 1.85
2211 3949 1.496429 CTCCTTTATGGGCTGGATGGT 59.504 52.381 0.00 0.00 36.20 3.55
2230 3968 1.323534 GTCTGTAATACACTTGGCGCG 59.676 52.381 0.00 0.00 0.00 6.86
2243 3981 1.725973 GGCGCGCTTGTTCTGAAAC 60.726 57.895 32.29 5.31 35.85 2.78
2280 4018 3.951037 TGAACTGGAGAGCAGTAGAGATC 59.049 47.826 0.00 0.00 31.85 2.75
2289 4027 5.358922 AGAGCAGTAGAGATCTTCATTTGC 58.641 41.667 0.00 4.49 0.00 3.68
2308 4046 7.663081 TCATTTGCTTTTGCCATTTACCAAATA 59.337 29.630 0.00 0.00 46.87 1.40
2313 4051 7.663081 TGCTTTTGCCATTTACCAAATATTCAA 59.337 29.630 0.00 0.00 46.87 2.69
2314 4052 7.962373 GCTTTTGCCATTTACCAAATATTCAAC 59.038 33.333 0.00 0.00 40.15 3.18
2316 4054 8.545229 TTTGCCATTTACCAAATATTCAACTG 57.455 30.769 0.00 0.00 0.00 3.16
2329 4067 2.090400 TCAACTGATCTGACTGCTGC 57.910 50.000 6.60 0.00 0.00 5.25
2335 4073 0.743701 GATCTGACTGCTGCTGTGGG 60.744 60.000 17.10 9.08 0.00 4.61
2348 4086 1.408702 GCTGTGGGTGATGTTGTTTGT 59.591 47.619 0.00 0.00 0.00 2.83
2362 4100 4.035792 TGTTGTTTGTTCAGGGACATTACG 59.964 41.667 0.00 0.00 0.00 3.18
2397 4135 2.095059 GCTTTGTGATGCATTCGGAAGT 60.095 45.455 0.00 0.00 0.00 3.01
2410 4148 2.079158 TCGGAAGTCGACGATTACAGT 58.921 47.619 10.46 0.00 43.74 3.55
2432 4170 4.275936 GTGGAATCAGCAAATAATAGCCGT 59.724 41.667 0.00 0.00 0.00 5.68
2437 4175 1.949525 AGCAAATAATAGCCGTGCCTG 59.050 47.619 0.00 0.00 35.80 4.85
2438 4176 1.600413 GCAAATAATAGCCGTGCCTGC 60.600 52.381 0.00 0.00 0.00 4.85
2439 4177 1.001378 CAAATAATAGCCGTGCCTGCC 60.001 52.381 0.00 0.00 0.00 4.85
2440 4178 0.474184 AATAATAGCCGTGCCTGCCT 59.526 50.000 0.00 0.00 0.00 4.75
2441 4179 0.250467 ATAATAGCCGTGCCTGCCTG 60.250 55.000 0.00 0.00 0.00 4.85
2442 4180 2.940890 TAATAGCCGTGCCTGCCTGC 62.941 60.000 0.00 0.00 0.00 4.85
2458 4196 2.827642 GCCTGCCTGCCTCATGAC 60.828 66.667 0.00 0.00 0.00 3.06
2462 4200 4.101448 GCCTGCCTCATGACCCGT 62.101 66.667 0.00 0.00 0.00 5.28
2463 4201 2.187946 CCTGCCTCATGACCCGTC 59.812 66.667 0.00 0.00 0.00 4.79
2464 4202 2.187946 CTGCCTCATGACCCGTCC 59.812 66.667 0.00 0.00 0.00 4.79
2480 4218 0.110486 GTCCCCGGCCATGTATGAAT 59.890 55.000 2.24 0.00 0.00 2.57
2486 4224 2.679837 CCGGCCATGTATGAATATGCTC 59.320 50.000 2.24 0.00 0.00 4.26
2487 4225 3.603532 CGGCCATGTATGAATATGCTCT 58.396 45.455 2.24 0.00 0.00 4.09
2493 4231 5.413833 CCATGTATGAATATGCTCTTGGGAC 59.586 44.000 0.00 0.00 0.00 4.46
2494 4232 5.894298 TGTATGAATATGCTCTTGGGACT 57.106 39.130 0.00 0.00 0.00 3.85
2495 4233 5.614308 TGTATGAATATGCTCTTGGGACTG 58.386 41.667 0.00 0.00 0.00 3.51
2496 4234 3.565764 TGAATATGCTCTTGGGACTGG 57.434 47.619 0.00 0.00 0.00 4.00
2498 4236 2.196742 ATATGCTCTTGGGACTGGGA 57.803 50.000 0.00 0.00 0.00 4.37
2499 4237 1.500474 TATGCTCTTGGGACTGGGAG 58.500 55.000 0.00 0.00 0.00 4.30
2500 4238 1.277580 ATGCTCTTGGGACTGGGAGG 61.278 60.000 0.00 0.00 0.00 4.30
2501 4239 2.993853 CTCTTGGGACTGGGAGGC 59.006 66.667 0.00 0.00 0.00 4.70
2514 4255 1.377202 GGAGGCCGTGCATTCAGAA 60.377 57.895 0.00 0.00 0.00 3.02
2516 4257 0.674895 GAGGCCGTGCATTCAGAAGT 60.675 55.000 0.00 0.00 0.00 3.01
2536 4277 2.671177 CGTGAGCTGCAACCGGAAG 61.671 63.158 9.46 0.00 0.00 3.46
2555 4296 2.735772 GCCTGGAGCTCGAATGGGA 61.736 63.158 7.83 0.00 38.99 4.37
2574 4315 2.347490 GAGAACGCAAGGGAGCCA 59.653 61.111 0.00 0.00 46.39 4.75
2578 4319 0.678048 GAACGCAAGGGAGCCAATCT 60.678 55.000 0.00 0.00 46.39 2.40
2580 4321 2.768492 CGCAAGGGAGCCAATCTGC 61.768 63.158 0.00 0.00 0.00 4.26
2584 4325 4.115199 GGGAGCCAATCTGCCGGT 62.115 66.667 1.90 0.00 43.62 5.28
2585 4326 2.825836 GGAGCCAATCTGCCGGTG 60.826 66.667 1.90 0.00 0.00 4.94
2586 4327 2.268920 GAGCCAATCTGCCGGTGA 59.731 61.111 1.90 1.95 0.00 4.02
2588 4329 3.512516 GCCAATCTGCCGGTGAGC 61.513 66.667 1.90 0.00 0.00 4.26
2590 4331 2.434884 CAATCTGCCGGTGAGCGT 60.435 61.111 1.90 0.00 34.65 5.07
2591 4332 2.434884 AATCTGCCGGTGAGCGTG 60.435 61.111 1.90 0.00 34.65 5.34
2592 4333 2.942796 AATCTGCCGGTGAGCGTGA 61.943 57.895 1.90 0.00 34.65 4.35
2593 4334 3.649277 ATCTGCCGGTGAGCGTGAC 62.649 63.158 1.90 0.00 34.65 3.67
2594 4335 4.363990 CTGCCGGTGAGCGTGACT 62.364 66.667 1.90 0.00 34.65 3.41
2608 4349 1.468054 CGTGACTGCGTGAGATGATGA 60.468 52.381 0.00 0.00 0.00 2.92
2629 4370 1.560923 CACCGGACGATGACTTCATC 58.439 55.000 9.46 8.90 46.93 2.92
2641 4383 2.965147 TGACTTCATCCCATGCGAGATA 59.035 45.455 0.00 0.00 0.00 1.98
2645 4387 0.322648 CATCCCATGCGAGATAGGCA 59.677 55.000 0.00 0.00 45.71 4.75
2654 4396 2.230750 TGCGAGATAGGCATCAGATCAG 59.769 50.000 0.00 0.00 35.04 2.90
2655 4397 2.491298 GCGAGATAGGCATCAGATCAGA 59.509 50.000 0.00 0.00 33.21 3.27
2656 4398 3.673052 GCGAGATAGGCATCAGATCAGAC 60.673 52.174 0.00 0.00 33.21 3.51
2657 4399 3.758023 CGAGATAGGCATCAGATCAGACT 59.242 47.826 0.00 0.00 33.21 3.24
2658 4400 4.379708 CGAGATAGGCATCAGATCAGACTG 60.380 50.000 0.00 0.00 39.02 3.51
2679 4421 8.091449 AGACTGTCTGAGGTTAACTAAGAAATG 58.909 37.037 10.00 3.52 38.46 2.32
2754 4496 0.109086 CAGGTGACTAGGCAGTGACG 60.109 60.000 0.00 0.00 39.55 4.35
2759 4501 0.882474 GACTAGGCAGTGACGAGTGT 59.118 55.000 17.31 1.01 34.21 3.55
2762 4504 2.290134 ACTAGGCAGTGACGAGTGTCTA 60.290 50.000 11.39 0.00 45.70 2.59
2765 4507 0.794981 GCAGTGACGAGTGTCTAGCG 60.795 60.000 0.00 0.00 45.70 4.26
2769 4511 1.062294 GTGACGAGTGTCTAGCGTAGG 59.938 57.143 0.00 0.00 45.70 3.18
2772 4514 1.467734 ACGAGTGTCTAGCGTAGGTTG 59.532 52.381 0.00 0.00 40.68 3.77
2773 4515 1.467734 CGAGTGTCTAGCGTAGGTTGT 59.532 52.381 0.00 0.00 40.68 3.32
2774 4516 2.095364 CGAGTGTCTAGCGTAGGTTGTT 60.095 50.000 0.00 0.00 40.68 2.83
2775 4517 3.243336 GAGTGTCTAGCGTAGGTTGTTG 58.757 50.000 0.00 0.00 40.68 3.33
2776 4518 2.626743 AGTGTCTAGCGTAGGTTGTTGT 59.373 45.455 0.00 0.00 40.68 3.32
2777 4519 3.822735 AGTGTCTAGCGTAGGTTGTTGTA 59.177 43.478 0.00 0.00 40.68 2.41
2793 4535 8.234546 AGGTTGTTGTAGTAAAATCGCTAATTG 58.765 33.333 0.00 0.00 0.00 2.32
2813 4556 9.665264 CTAATTGGACTTGTAAAACTTGTCTTC 57.335 33.333 0.00 0.00 0.00 2.87
2814 4557 6.445357 TTGGACTTGTAAAACTTGTCTTCC 57.555 37.500 0.00 0.00 0.00 3.46
2815 4558 4.573201 TGGACTTGTAAAACTTGTCTTCCG 59.427 41.667 0.00 0.00 0.00 4.30
2828 4571 5.644636 ACTTGTCTTCCGTTGACTTGTAAAA 59.355 36.000 0.00 0.00 35.63 1.52
2846 4690 5.685068 TGTAAAACAAACGATGTCAGCATTG 59.315 36.000 0.00 2.94 42.99 2.82
2859 4703 4.082300 TGTCAGCATTGTTTTCGGCAATAT 60.082 37.500 0.00 0.00 35.09 1.28
2863 4707 6.039159 TCAGCATTGTTTTCGGCAATATATGA 59.961 34.615 0.00 0.00 35.09 2.15
2870 4714 8.050778 TGTTTTCGGCAATATATGATAATCCC 57.949 34.615 0.00 0.00 0.00 3.85
2880 4724 1.140312 TGATAATCCCCTGTGCTCCC 58.860 55.000 0.00 0.00 0.00 4.30
2881 4725 1.140312 GATAATCCCCTGTGCTCCCA 58.860 55.000 0.00 0.00 0.00 4.37
2883 4727 1.140312 TAATCCCCTGTGCTCCCATC 58.860 55.000 0.00 0.00 0.00 3.51
2884 4728 1.987807 AATCCCCTGTGCTCCCATCG 61.988 60.000 0.00 0.00 0.00 3.84
2885 4729 2.896677 ATCCCCTGTGCTCCCATCGA 62.897 60.000 0.00 0.00 0.00 3.59
2886 4730 2.503061 CCCTGTGCTCCCATCGAG 59.497 66.667 0.00 0.00 42.04 4.04
2894 4738 3.963676 CTCCCATCGAGCTTGAGAG 57.036 57.895 10.06 7.03 0.00 3.20
2895 4739 1.397672 CTCCCATCGAGCTTGAGAGA 58.602 55.000 10.06 5.15 0.00 3.10
2896 4740 1.337703 CTCCCATCGAGCTTGAGAGAG 59.662 57.143 10.06 10.83 0.00 3.20
2897 4741 1.064389 TCCCATCGAGCTTGAGAGAGA 60.064 52.381 10.06 1.05 0.00 3.10
2898 4742 1.066908 CCCATCGAGCTTGAGAGAGAC 59.933 57.143 10.06 0.00 0.00 3.36
2899 4743 1.066908 CCATCGAGCTTGAGAGAGACC 59.933 57.143 10.06 0.00 0.00 3.85
2900 4744 1.747924 CATCGAGCTTGAGAGAGACCA 59.252 52.381 10.06 0.00 0.00 4.02
2901 4745 1.458398 TCGAGCTTGAGAGAGACCAG 58.542 55.000 0.00 0.00 0.00 4.00
2902 4746 1.003696 TCGAGCTTGAGAGAGACCAGA 59.996 52.381 0.00 0.00 0.00 3.86
2903 4747 1.401552 CGAGCTTGAGAGAGACCAGAG 59.598 57.143 0.00 0.00 0.00 3.35
2904 4748 2.722094 GAGCTTGAGAGAGACCAGAGA 58.278 52.381 0.00 0.00 0.00 3.10
2905 4749 2.684881 GAGCTTGAGAGAGACCAGAGAG 59.315 54.545 0.00 0.00 0.00 3.20
2906 4750 1.134946 GCTTGAGAGAGACCAGAGAGC 59.865 57.143 0.00 0.00 0.00 4.09
2907 4751 2.445427 CTTGAGAGAGACCAGAGAGCA 58.555 52.381 0.00 0.00 0.00 4.26
2908 4752 2.593925 TGAGAGAGACCAGAGAGCAA 57.406 50.000 0.00 0.00 0.00 3.91
2909 4753 2.445427 TGAGAGAGACCAGAGAGCAAG 58.555 52.381 0.00 0.00 0.00 4.01
2910 4754 1.750778 GAGAGAGACCAGAGAGCAAGG 59.249 57.143 0.00 0.00 0.00 3.61
2911 4755 0.823460 GAGAGACCAGAGAGCAAGGG 59.177 60.000 0.00 0.00 0.00 3.95
2912 4756 0.411452 AGAGACCAGAGAGCAAGGGA 59.589 55.000 0.00 0.00 0.00 4.20
2913 4757 0.823460 GAGACCAGAGAGCAAGGGAG 59.177 60.000 0.00 0.00 0.00 4.30
2914 4758 1.220477 GACCAGAGAGCAAGGGAGC 59.780 63.158 0.00 0.00 0.00 4.70
2916 4760 0.839853 ACCAGAGAGCAAGGGAGCTT 60.840 55.000 0.00 0.00 46.75 3.74
2917 4761 0.392729 CCAGAGAGCAAGGGAGCTTG 60.393 60.000 0.00 0.00 46.75 4.01
2918 4762 0.612229 CAGAGAGCAAGGGAGCTTGA 59.388 55.000 0.00 0.00 46.75 3.02
2919 4763 0.612744 AGAGAGCAAGGGAGCTTGAC 59.387 55.000 0.00 0.00 46.75 3.18
2920 4764 0.392327 GAGAGCAAGGGAGCTTGACC 60.392 60.000 0.00 0.00 46.75 4.02
2921 4765 0.839853 AGAGCAAGGGAGCTTGACCT 60.840 55.000 0.00 0.00 46.75 3.85
2922 4766 0.037447 GAGCAAGGGAGCTTGACCTT 59.963 55.000 11.26 11.26 46.75 3.50
2925 4769 2.868504 AAGGGAGCTTGACCTTGGA 58.131 52.632 15.05 0.00 45.03 3.53
2926 4770 0.695347 AAGGGAGCTTGACCTTGGAG 59.305 55.000 15.05 0.00 45.03 3.86
2927 4771 0.178891 AGGGAGCTTGACCTTGGAGA 60.179 55.000 0.00 0.00 31.68 3.71
2928 4772 0.035915 GGGAGCTTGACCTTGGAGAC 60.036 60.000 0.00 0.00 0.00 3.36
2929 4773 0.390472 GGAGCTTGACCTTGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
2930 4774 1.004440 AGCTTGACCTTGGAGACGC 60.004 57.895 0.00 0.00 0.00 5.19
2931 4775 1.004440 GCTTGACCTTGGAGACGCT 60.004 57.895 0.00 0.00 0.00 5.07
2932 4776 1.016653 GCTTGACCTTGGAGACGCTC 61.017 60.000 0.00 0.00 0.00 5.03
2933 4777 0.605589 CTTGACCTTGGAGACGCTCT 59.394 55.000 6.78 0.00 0.00 4.09
2934 4778 0.318441 TTGACCTTGGAGACGCTCTG 59.682 55.000 6.78 0.00 0.00 3.35
2935 4779 1.446966 GACCTTGGAGACGCTCTGC 60.447 63.158 6.78 3.78 35.21 4.26
2936 4780 2.159819 GACCTTGGAGACGCTCTGCA 62.160 60.000 5.39 5.39 43.20 4.41
2968 4812 2.328099 CCACCACCTTCTTGCGCTC 61.328 63.158 9.73 0.00 0.00 5.03
2971 4815 2.037136 CCACCTTCTTGCGCTCCAG 61.037 63.158 9.73 1.76 0.00 3.86
2972 4816 2.037136 CACCTTCTTGCGCTCCAGG 61.037 63.158 9.73 11.32 0.00 4.45
2987 4831 1.004918 CAGGTCCACCTCGAACCAC 60.005 63.158 6.03 0.00 46.65 4.16
2989 4833 2.732658 GTCCACCTCGAACCACGT 59.267 61.111 0.00 0.00 43.13 4.49
2993 4837 1.663702 CACCTCGAACCACGTCACC 60.664 63.158 0.00 0.00 43.13 4.02
3000 4844 3.767630 AACCACGTCACCCCTGCAC 62.768 63.158 0.00 0.00 0.00 4.57
3003 4847 4.250305 ACGTCACCCCTGCACCAC 62.250 66.667 0.00 0.00 0.00 4.16
3006 4850 3.884774 TCACCCCTGCACCACCAC 61.885 66.667 0.00 0.00 0.00 4.16
3009 4853 4.217210 CCCCTGCACCACCACCAA 62.217 66.667 0.00 0.00 0.00 3.67
3010 4854 2.123511 CCCTGCACCACCACCAAA 60.124 61.111 0.00 0.00 0.00 3.28
3015 4859 1.326213 TGCACCACCACCAAACCAAG 61.326 55.000 0.00 0.00 0.00 3.61
3024 4868 1.034838 ACCAAACCAAGAGCGCACAA 61.035 50.000 11.47 0.00 0.00 3.33
3025 4869 0.318107 CCAAACCAAGAGCGCACAAG 60.318 55.000 11.47 0.00 0.00 3.16
3027 4871 2.075426 AAACCAAGAGCGCACAAGCC 62.075 55.000 11.47 0.00 37.52 4.35
3037 4881 2.579201 CACAAGCCGAGACCCGAT 59.421 61.111 0.00 0.00 41.76 4.18
3038 4882 1.519455 CACAAGCCGAGACCCGATC 60.519 63.158 0.00 0.00 41.76 3.69
3039 4883 1.682684 ACAAGCCGAGACCCGATCT 60.683 57.895 0.00 0.00 41.91 2.75
3040 4884 1.227089 CAAGCCGAGACCCGATCTG 60.227 63.158 0.00 0.00 38.00 2.90
3041 4885 1.379977 AAGCCGAGACCCGATCTGA 60.380 57.895 0.00 0.00 38.00 3.27
3042 4886 1.388065 AAGCCGAGACCCGATCTGAG 61.388 60.000 0.00 0.00 38.00 3.35
3049 4893 3.436496 GAGACCCGATCTGAGTTTTACG 58.564 50.000 0.00 0.00 38.00 3.18
3053 4897 1.582502 CCGATCTGAGTTTTACGACGC 59.417 52.381 0.00 0.00 0.00 5.19
3055 4899 1.582502 GATCTGAGTTTTACGACGCCG 59.417 52.381 0.00 0.00 42.50 6.46
3056 4900 0.592637 TCTGAGTTTTACGACGCCGA 59.407 50.000 0.00 0.00 39.50 5.54
3059 4903 0.706729 GAGTTTTACGACGCCGACAG 59.293 55.000 0.00 0.00 39.50 3.51
3070 4930 3.122278 CGACGCCGACAGATTAAAAGAAA 59.878 43.478 0.00 0.00 38.22 2.52
3077 4938 6.569610 GCCGACAGATTAAAAGAAATGTGGAA 60.570 38.462 0.00 0.00 35.12 3.53
3108 4969 3.119316 AGCGACAACAAACAAATGGACAA 60.119 39.130 0.00 0.00 0.00 3.18
3109 4970 3.614616 GCGACAACAAACAAATGGACAAA 59.385 39.130 0.00 0.00 0.00 2.83
3113 4989 6.899243 CGACAACAAACAAATGGACAAAATTC 59.101 34.615 0.00 0.00 0.00 2.17
3127 5003 8.964476 TGGACAAAATTCTCTATTCTACATCC 57.036 34.615 0.00 0.00 0.00 3.51
3176 5052 1.604278 GCTCGTGTTCTTGCCTCTTTT 59.396 47.619 0.00 0.00 0.00 2.27
3185 5061 4.986054 TCTTGCCTCTTTTACCCAACTA 57.014 40.909 0.00 0.00 0.00 2.24
3249 5125 3.555586 GGACTTGTGCAGCAAATTTCCAT 60.556 43.478 0.00 0.00 36.53 3.41
3263 5139 2.203252 CCATGACAGGATGCCCCG 60.203 66.667 0.00 0.00 42.53 5.73
3264 5140 2.903855 CATGACAGGATGCCCCGC 60.904 66.667 0.00 0.00 42.53 6.13
3280 5156 2.666356 CGCCGCATGCACGCATATA 61.666 57.895 22.43 0.00 41.33 0.86
3281 5157 1.796151 GCCGCATGCACGCATATAT 59.204 52.632 19.57 0.00 40.77 0.86
3282 5158 1.006086 GCCGCATGCACGCATATATA 58.994 50.000 19.57 0.00 40.77 0.86
3287 5163 2.221749 GCATGCACGCATATATATCCCG 59.778 50.000 14.21 9.58 34.91 5.14
3359 5235 6.071560 TGTGTAGTTAGTATCACTCCACCTTG 60.072 42.308 0.00 0.00 0.00 3.61
3363 5239 6.838382 AGTTAGTATCACTCCACCTTGTTTT 58.162 36.000 0.00 0.00 0.00 2.43
3364 5240 6.710744 AGTTAGTATCACTCCACCTTGTTTTG 59.289 38.462 0.00 0.00 0.00 2.44
3365 5241 3.821033 AGTATCACTCCACCTTGTTTTGC 59.179 43.478 0.00 0.00 0.00 3.68
3366 5242 2.435372 TCACTCCACCTTGTTTTGCT 57.565 45.000 0.00 0.00 0.00 3.91
3399 5278 2.025156 CATCATGCGCGGAAAGGC 59.975 61.111 3.18 0.00 0.00 4.35
3402 5281 4.842091 CATGCGCGGAAAGGCTGC 62.842 66.667 3.18 0.00 45.70 5.25
3420 5299 1.109323 GCTGGTTGGTTGGTTCAGCT 61.109 55.000 0.00 0.00 45.03 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.902806 CCCTTTCTTAAATTTTGCTTCCTTTTT 58.097 29.630 0.00 0.00 0.00 1.94
15 16 7.013274 GCCCTTTCTTAAATTTTGCTTCCTTTT 59.987 33.333 0.00 0.00 0.00 2.27
16 17 6.486657 GCCCTTTCTTAAATTTTGCTTCCTTT 59.513 34.615 0.00 0.00 0.00 3.11
17 18 5.997746 GCCCTTTCTTAAATTTTGCTTCCTT 59.002 36.000 0.00 0.00 0.00 3.36
18 19 5.513094 GGCCCTTTCTTAAATTTTGCTTCCT 60.513 40.000 0.00 0.00 0.00 3.36
19 20 4.695455 GGCCCTTTCTTAAATTTTGCTTCC 59.305 41.667 0.00 0.00 0.00 3.46
20 21 5.304778 TGGCCCTTTCTTAAATTTTGCTTC 58.695 37.500 0.00 0.00 0.00 3.86
21 22 5.303259 TGGCCCTTTCTTAAATTTTGCTT 57.697 34.783 0.00 0.00 0.00 3.91
22 23 4.972751 TGGCCCTTTCTTAAATTTTGCT 57.027 36.364 0.00 0.00 0.00 3.91
23 24 6.573664 ATTTGGCCCTTTCTTAAATTTTGC 57.426 33.333 0.00 0.00 0.00 3.68
31 32 9.500785 CAAAATTCTTTATTTGGCCCTTTCTTA 57.499 29.630 0.00 0.00 36.57 2.10
32 33 7.998383 ACAAAATTCTTTATTTGGCCCTTTCTT 59.002 29.630 0.00 0.00 40.09 2.52
33 34 7.517320 ACAAAATTCTTTATTTGGCCCTTTCT 58.483 30.769 0.00 0.00 40.09 2.52
34 35 7.744087 ACAAAATTCTTTATTTGGCCCTTTC 57.256 32.000 0.00 0.00 40.09 2.62
35 36 7.744087 GACAAAATTCTTTATTTGGCCCTTT 57.256 32.000 0.00 0.00 38.37 3.11
52 53 4.782929 GCGGACGCTTTTGGGACAAAAT 62.783 50.000 9.76 0.00 40.47 1.82
53 54 3.536162 GCGGACGCTTTTGGGACAAAA 62.536 52.381 9.76 6.93 40.47 2.44
54 55 2.065906 GCGGACGCTTTTGGGACAAA 62.066 55.000 9.76 0.00 40.47 2.83
55 56 2.548295 GCGGACGCTTTTGGGACAA 61.548 57.895 9.76 0.00 40.47 3.18
56 57 2.975799 GCGGACGCTTTTGGGACA 60.976 61.111 9.76 0.00 38.26 4.02
170 171 1.218316 GGACGGTCACCACCAGATC 59.782 63.158 10.76 0.00 44.02 2.75
180 181 1.626825 CCTTTTTCCTAGGGACGGTCA 59.373 52.381 9.46 0.00 0.00 4.02
214 221 5.823045 TCAACTGTTTTTCTCTCCCTCTTTC 59.177 40.000 0.00 0.00 0.00 2.62
215 222 5.755849 TCAACTGTTTTTCTCTCCCTCTTT 58.244 37.500 0.00 0.00 0.00 2.52
217 224 5.373812 TTCAACTGTTTTTCTCTCCCTCT 57.626 39.130 0.00 0.00 0.00 3.69
220 227 4.097892 TGCTTTCAACTGTTTTTCTCTCCC 59.902 41.667 0.00 0.00 0.00 4.30
221 228 5.248870 TGCTTTCAACTGTTTTTCTCTCC 57.751 39.130 0.00 0.00 0.00 3.71
222 229 4.737279 GCTGCTTTCAACTGTTTTTCTCTC 59.263 41.667 0.00 0.00 0.00 3.20
437 464 2.556287 GAGCGGCTGGTTCGTTTG 59.444 61.111 7.50 0.00 0.00 2.93
471 498 4.159506 TGCTGTGGTAAATAAAAGGATGGC 59.840 41.667 0.00 0.00 0.00 4.40
475 502 4.402829 TGCTGCTGTGGTAAATAAAAGGA 58.597 39.130 0.00 0.00 0.00 3.36
517 549 0.662970 GAATCTAGCTGCGCGGAGAG 60.663 60.000 32.75 20.36 31.26 3.20
518 550 1.360551 GAATCTAGCTGCGCGGAGA 59.639 57.895 32.75 15.60 32.01 3.71
519 551 2.013483 CGAATCTAGCTGCGCGGAG 61.013 63.158 24.50 24.50 0.00 4.63
520 552 2.026157 CGAATCTAGCTGCGCGGA 59.974 61.111 23.20 3.19 0.00 5.54
521 553 3.032609 CCGAATCTAGCTGCGCGG 61.033 66.667 13.18 13.18 0.00 6.46
522 554 3.696426 GCCGAATCTAGCTGCGCG 61.696 66.667 0.00 0.00 0.00 6.86
523 555 3.696426 CGCCGAATCTAGCTGCGC 61.696 66.667 0.00 0.00 38.69 6.09
525 557 2.586079 TGCGCCGAATCTAGCTGC 60.586 61.111 4.18 0.00 0.00 5.25
526 558 2.240500 GGTGCGCCGAATCTAGCTG 61.241 63.158 4.18 0.00 0.00 4.24
527 559 2.107141 GGTGCGCCGAATCTAGCT 59.893 61.111 4.18 0.00 0.00 3.32
528 560 2.107141 AGGTGCGCCGAATCTAGC 59.893 61.111 11.42 0.00 40.50 3.42
580 632 2.436824 GGCTTCTCCCCGTTGAGC 60.437 66.667 0.00 0.00 32.22 4.26
590 642 1.135575 CGGCAAGTCAAATGGCTTCTC 60.136 52.381 0.00 0.00 38.00 2.87
591 643 0.883833 CGGCAAGTCAAATGGCTTCT 59.116 50.000 0.00 0.00 38.00 2.85
612 664 8.033626 GGGGGCGTAATATAGATATAGTATTGC 58.966 40.741 0.00 6.22 0.00 3.56
614 666 7.094032 GCGGGGGCGTAATATAGATATAGTATT 60.094 40.741 0.00 0.00 0.00 1.89
653 705 2.352225 CGTCTCAACTCTCAACCTCTGG 60.352 54.545 0.00 0.00 0.00 3.86
662 714 2.743938 TGTCTTTGCGTCTCAACTCTC 58.256 47.619 0.00 0.00 33.73 3.20
667 719 2.872245 CTCCTTTGTCTTTGCGTCTCAA 59.128 45.455 0.00 0.00 0.00 3.02
668 720 2.102420 TCTCCTTTGTCTTTGCGTCTCA 59.898 45.455 0.00 0.00 0.00 3.27
669 721 2.734079 CTCTCCTTTGTCTTTGCGTCTC 59.266 50.000 0.00 0.00 0.00 3.36
670 722 2.760374 CTCTCCTTTGTCTTTGCGTCT 58.240 47.619 0.00 0.00 0.00 4.18
671 723 1.195674 GCTCTCCTTTGTCTTTGCGTC 59.804 52.381 0.00 0.00 0.00 5.19
672 724 1.230324 GCTCTCCTTTGTCTTTGCGT 58.770 50.000 0.00 0.00 0.00 5.24
673 725 0.519077 GGCTCTCCTTTGTCTTTGCG 59.481 55.000 0.00 0.00 0.00 4.85
727 787 4.853468 AGGGGGAAGAGAAAGATCTTTC 57.147 45.455 32.17 32.17 46.85 2.62
751 811 2.985282 TGCTGCTTTGGCCGGAAG 60.985 61.111 5.05 12.96 37.74 3.46
775 835 4.643387 AGTGTCCAACCCTGCCGC 62.643 66.667 0.00 0.00 0.00 6.53
776 836 2.358737 GAGTGTCCAACCCTGCCG 60.359 66.667 0.00 0.00 0.00 5.69
788 848 1.215647 GGCGAAGACGATGGAGTGT 59.784 57.895 0.00 0.00 42.66 3.55
818 882 1.774639 AAACAGCAAGCAAGCAATCG 58.225 45.000 3.19 0.00 36.85 3.34
821 885 1.135141 ACGAAAACAGCAAGCAAGCAA 60.135 42.857 3.19 0.00 36.85 3.91
822 886 0.455410 ACGAAAACAGCAAGCAAGCA 59.545 45.000 3.19 0.00 36.85 3.91
823 887 0.848305 CACGAAAACAGCAAGCAAGC 59.152 50.000 0.00 0.00 0.00 4.01
824 888 0.848305 GCACGAAAACAGCAAGCAAG 59.152 50.000 0.00 0.00 0.00 4.01
848 912 1.439529 CGCAACACGCAAACGCATA 60.440 52.632 0.00 0.00 45.53 3.14
849 913 2.725450 CGCAACACGCAAACGCAT 60.725 55.556 0.00 0.00 45.53 4.73
884 948 1.522355 CACAGCCAAGCCGATCGAT 60.522 57.895 18.66 0.00 0.00 3.59
887 951 3.512516 GCCACAGCCAAGCCGATC 61.513 66.667 0.00 0.00 0.00 3.69
897 961 1.743252 GCACTCTACAGGCCACAGC 60.743 63.158 5.01 0.00 38.76 4.40
899 963 0.035317 CTTGCACTCTACAGGCCACA 59.965 55.000 5.01 0.00 0.00 4.17
902 966 1.484240 AGATCTTGCACTCTACAGGCC 59.516 52.381 0.00 0.00 0.00 5.19
903 967 2.430332 AGAGATCTTGCACTCTACAGGC 59.570 50.000 2.88 0.00 40.98 4.85
904 968 4.402155 AGAAGAGATCTTGCACTCTACAGG 59.598 45.833 5.11 0.00 41.77 4.00
917 984 1.452145 GCCGGCGAGAGAAGAGATCT 61.452 60.000 12.58 0.00 42.61 2.75
918 985 1.007849 GCCGGCGAGAGAAGAGATC 60.008 63.158 12.58 0.00 0.00 2.75
949 1016 1.227674 GGAAGCCAAGCCGATCGAT 60.228 57.895 18.66 0.00 0.00 3.59
1110 1180 6.017192 TCAGTTGAGGTAGTACAGAGGAAAT 58.983 40.000 2.06 0.00 0.00 2.17
1115 1185 5.419155 TCCATTCAGTTGAGGTAGTACAGAG 59.581 44.000 2.06 0.00 0.00 3.35
1117 1187 5.661056 TCCATTCAGTTGAGGTAGTACAG 57.339 43.478 2.06 0.00 0.00 2.74
1119 1189 4.870991 GCTTCCATTCAGTTGAGGTAGTAC 59.129 45.833 0.00 0.00 0.00 2.73
1120 1190 4.777896 AGCTTCCATTCAGTTGAGGTAGTA 59.222 41.667 0.00 0.00 0.00 1.82
1121 1191 3.584848 AGCTTCCATTCAGTTGAGGTAGT 59.415 43.478 0.00 0.00 0.00 2.73
1122 1192 4.187694 GAGCTTCCATTCAGTTGAGGTAG 58.812 47.826 0.00 0.00 0.00 3.18
1123 1193 3.582647 TGAGCTTCCATTCAGTTGAGGTA 59.417 43.478 0.00 0.00 0.00 3.08
1124 1194 2.373169 TGAGCTTCCATTCAGTTGAGGT 59.627 45.455 0.00 0.00 0.00 3.85
1125 1195 3.063510 TGAGCTTCCATTCAGTTGAGG 57.936 47.619 0.00 0.00 0.00 3.86
1127 1197 4.005650 GACATGAGCTTCCATTCAGTTGA 58.994 43.478 0.00 0.00 0.00 3.18
1129 1199 3.005554 CGACATGAGCTTCCATTCAGTT 58.994 45.455 0.00 0.00 0.00 3.16
1538 1744 3.243771 ACGACGAATGGACAGAAAAGACT 60.244 43.478 0.00 0.00 0.00 3.24
1569 1780 5.534207 AACCAGAGATGTTGATTTTTGCA 57.466 34.783 0.00 0.00 0.00 4.08
1605 1823 5.186409 AGAGATGGCAACTACAAATGCAAAT 59.814 36.000 0.00 0.00 44.32 2.32
1607 1825 4.081406 AGAGATGGCAACTACAAATGCAA 58.919 39.130 0.00 0.00 44.32 4.08
1608 1826 3.689347 AGAGATGGCAACTACAAATGCA 58.311 40.909 0.00 0.00 44.32 3.96
1609 1827 3.944015 AGAGAGATGGCAACTACAAATGC 59.056 43.478 0.00 0.00 41.82 3.56
1742 1982 4.297768 TCATCAGGATAGGTCATGGACAA 58.702 43.478 0.00 0.00 36.81 3.18
1752 2588 6.604795 AGTTCACCAAAATTCATCAGGATAGG 59.395 38.462 0.00 0.00 0.00 2.57
1759 3232 5.927689 GCAATCAGTTCACCAAAATTCATCA 59.072 36.000 0.00 0.00 0.00 3.07
1760 3233 5.349543 GGCAATCAGTTCACCAAAATTCATC 59.650 40.000 0.00 0.00 0.00 2.92
1761 3234 5.012354 AGGCAATCAGTTCACCAAAATTCAT 59.988 36.000 0.00 0.00 0.00 2.57
1789 3262 2.201732 AGCTGTACGTGTCAACAACAG 58.798 47.619 7.81 7.81 40.47 3.16
1790 3263 2.198406 GAGCTGTACGTGTCAACAACA 58.802 47.619 0.00 0.00 34.78 3.33
1791 3264 1.525619 GGAGCTGTACGTGTCAACAAC 59.474 52.381 0.00 0.00 0.00 3.32
1796 3269 2.632544 CCCGGAGCTGTACGTGTCA 61.633 63.158 0.73 0.00 0.00 3.58
1831 3304 2.436292 AGGTCGGACTCGTCGAGG 60.436 66.667 25.25 8.76 37.31 4.63
1919 3396 8.637986 AGAGAGACTGAATAAATACATGGAGAC 58.362 37.037 0.00 0.00 0.00 3.36
1942 3640 8.748380 AAAACAAGAAAACACTTCTCAAAGAG 57.252 30.769 0.00 0.00 36.30 2.85
1983 3718 2.436292 GAGCAGAGCAGCACAGGG 60.436 66.667 0.00 0.00 36.85 4.45
2045 3781 0.753262 CCTTGGGGTCTATCCTGTCG 59.247 60.000 0.00 0.00 36.25 4.35
2141 3879 0.804156 GCTGAAGAGTAGAGCGGCAC 60.804 60.000 1.45 0.00 33.01 5.01
2185 3923 0.912486 AGCCCATAAAGGAGAAGCGT 59.088 50.000 0.00 0.00 41.22 5.07
2211 3949 1.635844 CGCGCCAAGTGTATTACAGA 58.364 50.000 0.00 0.00 0.00 3.41
2230 3968 2.278875 GCGTTTGTGTTTCAGAACAAGC 59.721 45.455 0.00 0.00 46.62 4.01
2243 3981 3.491356 CAGTTCACATATGGCGTTTGTG 58.509 45.455 20.13 20.13 41.60 3.33
2280 4018 5.469421 TGGTAAATGGCAAAAGCAAATGAAG 59.531 36.000 0.00 0.00 0.00 3.02
2289 4027 9.218440 AGTTGAATATTTGGTAAATGGCAAAAG 57.782 29.630 0.00 0.00 32.38 2.27
2308 4046 3.008330 GCAGCAGTCAGATCAGTTGAAT 58.992 45.455 0.00 0.00 0.00 2.57
2313 4051 0.975135 ACAGCAGCAGTCAGATCAGT 59.025 50.000 0.00 0.00 0.00 3.41
2314 4052 1.360820 CACAGCAGCAGTCAGATCAG 58.639 55.000 0.00 0.00 0.00 2.90
2316 4054 0.743701 CCCACAGCAGCAGTCAGATC 60.744 60.000 0.00 0.00 0.00 2.75
2329 4067 3.130164 TGAACAAACAACATCACCCACAG 59.870 43.478 0.00 0.00 0.00 3.66
2335 4073 3.380004 TGTCCCTGAACAAACAACATCAC 59.620 43.478 0.00 0.00 0.00 3.06
2348 4086 0.108520 GCCGTCGTAATGTCCCTGAA 60.109 55.000 0.00 0.00 0.00 3.02
2397 4135 3.733988 GCTGATTCCACTGTAATCGTCGA 60.734 47.826 0.00 0.00 36.35 4.20
2410 4148 4.275689 CACGGCTATTATTTGCTGATTCCA 59.724 41.667 6.84 0.00 38.78 3.53
2441 4179 2.827642 GTCATGAGGCAGGCAGGC 60.828 66.667 0.00 0.00 44.61 4.85
2442 4180 2.124403 GGTCATGAGGCAGGCAGG 60.124 66.667 0.00 0.00 0.00 4.85
2443 4181 2.124403 GGGTCATGAGGCAGGCAG 60.124 66.667 0.00 0.00 0.00 4.85
2444 4182 4.100084 CGGGTCATGAGGCAGGCA 62.100 66.667 0.00 0.00 0.00 4.75
2445 4183 4.101448 ACGGGTCATGAGGCAGGC 62.101 66.667 0.00 0.00 0.00 4.85
2446 4184 2.187946 GACGGGTCATGAGGCAGG 59.812 66.667 0.00 0.00 0.00 4.85
2447 4185 2.187946 GGACGGGTCATGAGGCAG 59.812 66.667 0.00 0.00 0.00 4.85
2462 4200 1.735926 TATTCATACATGGCCGGGGA 58.264 50.000 2.18 0.00 0.00 4.81
2463 4201 2.368439 CATATTCATACATGGCCGGGG 58.632 52.381 2.18 0.00 0.00 5.73
2464 4202 1.745087 GCATATTCATACATGGCCGGG 59.255 52.381 2.18 0.00 0.00 5.73
2470 4208 6.148976 CAGTCCCAAGAGCATATTCATACATG 59.851 42.308 0.00 0.00 0.00 3.21
2473 4211 4.999950 CCAGTCCCAAGAGCATATTCATAC 59.000 45.833 0.00 0.00 0.00 2.39
2480 4218 1.500474 CTCCCAGTCCCAAGAGCATA 58.500 55.000 0.00 0.00 0.00 3.14
2486 4224 4.101448 CGGCCTCCCAGTCCCAAG 62.101 72.222 0.00 0.00 0.00 3.61
2487 4225 4.974438 ACGGCCTCCCAGTCCCAA 62.974 66.667 0.00 0.00 0.00 4.12
2493 4231 2.825836 GAATGCACGGCCTCCCAG 60.826 66.667 0.00 0.00 0.00 4.45
2494 4232 3.626996 CTGAATGCACGGCCTCCCA 62.627 63.158 0.00 0.00 0.00 4.37
2495 4233 2.819984 TTCTGAATGCACGGCCTCCC 62.820 60.000 0.00 0.00 0.00 4.30
2496 4234 1.372087 CTTCTGAATGCACGGCCTCC 61.372 60.000 0.00 0.00 0.00 4.30
2498 4236 0.957395 CACTTCTGAATGCACGGCCT 60.957 55.000 0.00 0.00 0.00 5.19
2499 4237 1.503542 CACTTCTGAATGCACGGCC 59.496 57.895 0.00 0.00 0.00 6.13
2500 4238 1.154150 GCACTTCTGAATGCACGGC 60.154 57.895 15.27 0.00 41.65 5.68
2501 4239 1.133253 CGCACTTCTGAATGCACGG 59.867 57.895 18.20 0.00 42.17 4.94
2504 4242 1.150827 CTCACGCACTTCTGAATGCA 58.849 50.000 18.20 0.00 42.17 3.96
2506 4244 1.128136 CAGCTCACGCACTTCTGAATG 59.872 52.381 0.00 0.00 39.10 2.67
2514 4255 2.974698 GGTTGCAGCTCACGCACT 60.975 61.111 0.00 0.00 39.59 4.40
2536 4277 2.203126 CCATTCGAGCTCCAGGCC 60.203 66.667 8.47 0.00 43.05 5.19
2540 4281 1.001631 TCCTCCCATTCGAGCTCCA 59.998 57.895 8.47 0.00 0.00 3.86
2555 4296 2.665603 GCTCCCTTGCGTTCTCCT 59.334 61.111 0.00 0.00 0.00 3.69
2574 4315 2.434884 CACGCTCACCGGCAGATT 60.435 61.111 0.00 0.00 42.52 2.40
2578 4319 4.662961 CAGTCACGCTCACCGGCA 62.663 66.667 0.00 0.00 42.52 5.69
2582 4323 3.406361 CACGCAGTCACGCTCACC 61.406 66.667 0.00 0.00 41.61 4.02
2584 4325 1.866853 ATCTCACGCAGTCACGCTCA 61.867 55.000 0.00 0.00 41.61 4.26
2585 4326 1.153939 ATCTCACGCAGTCACGCTC 60.154 57.895 0.00 0.00 41.61 5.03
2586 4327 1.445066 CATCTCACGCAGTCACGCT 60.445 57.895 0.00 0.00 41.61 5.07
2588 4329 0.919300 CATCATCTCACGCAGTCACG 59.081 55.000 0.00 0.00 41.61 4.35
2590 4331 1.134995 GGTCATCATCTCACGCAGTCA 60.135 52.381 0.00 0.00 41.61 3.41
2591 4332 1.134995 TGGTCATCATCTCACGCAGTC 60.135 52.381 0.00 0.00 41.61 3.51
2593 4334 1.284657 GTGGTCATCATCTCACGCAG 58.715 55.000 0.00 0.00 0.00 5.18
2594 4335 0.108186 GGTGGTCATCATCTCACGCA 60.108 55.000 0.00 0.00 0.00 5.24
2608 4349 1.183030 TGAAGTCATCGTCCGGTGGT 61.183 55.000 0.00 0.00 0.00 4.16
2629 4370 0.322648 TGATGCCTATCTCGCATGGG 59.677 55.000 2.76 2.76 46.76 4.00
2641 4383 2.749600 AGACAGTCTGATCTGATGCCT 58.250 47.619 6.91 1.36 38.63 4.75
2652 4394 6.576662 TCTTAGTTAACCTCAGACAGTCTG 57.423 41.667 22.94 22.94 45.59 3.51
2654 4396 7.332182 CCATTTCTTAGTTAACCTCAGACAGTC 59.668 40.741 0.88 0.00 0.00 3.51
2655 4397 7.162082 CCATTTCTTAGTTAACCTCAGACAGT 58.838 38.462 0.88 0.00 0.00 3.55
2656 4398 6.595716 CCCATTTCTTAGTTAACCTCAGACAG 59.404 42.308 0.88 0.00 0.00 3.51
2657 4399 6.472887 CCCATTTCTTAGTTAACCTCAGACA 58.527 40.000 0.88 0.00 0.00 3.41
2658 4400 5.354513 GCCCATTTCTTAGTTAACCTCAGAC 59.645 44.000 0.88 0.00 0.00 3.51
2701 4443 7.062722 GGTGTTTTGATAACCTCTCGTACTTAC 59.937 40.741 0.00 0.00 0.00 2.34
2702 4444 7.092716 GGTGTTTTGATAACCTCTCGTACTTA 58.907 38.462 0.00 0.00 0.00 2.24
2703 4445 5.930569 GGTGTTTTGATAACCTCTCGTACTT 59.069 40.000 0.00 0.00 0.00 2.24
2705 4447 4.325472 CGGTGTTTTGATAACCTCTCGTAC 59.675 45.833 0.00 0.00 0.00 3.67
2706 4448 4.218200 TCGGTGTTTTGATAACCTCTCGTA 59.782 41.667 0.00 0.00 0.00 3.43
2707 4449 3.006110 TCGGTGTTTTGATAACCTCTCGT 59.994 43.478 0.00 0.00 0.00 4.18
2708 4450 3.581755 TCGGTGTTTTGATAACCTCTCG 58.418 45.455 0.00 0.00 0.00 4.04
2709 4451 4.267928 CGATCGGTGTTTTGATAACCTCTC 59.732 45.833 7.38 0.00 0.00 3.20
2717 4459 2.002586 CTGCTCGATCGGTGTTTTGAT 58.997 47.619 16.41 0.00 0.00 2.57
2754 4496 3.243336 CAACAACCTACGCTAGACACTC 58.757 50.000 0.00 0.00 0.00 3.51
2759 4501 6.573664 TTTACTACAACAACCTACGCTAGA 57.426 37.500 0.00 0.00 0.00 2.43
2762 4504 5.346822 CGATTTTACTACAACAACCTACGCT 59.653 40.000 0.00 0.00 0.00 5.07
2765 4507 6.716898 AGCGATTTTACTACAACAACCTAC 57.283 37.500 0.00 0.00 0.00 3.18
2769 4511 8.231837 TCCAATTAGCGATTTTACTACAACAAC 58.768 33.333 0.00 0.00 0.00 3.32
2772 4514 7.971455 AGTCCAATTAGCGATTTTACTACAAC 58.029 34.615 0.00 0.00 0.00 3.32
2773 4515 8.447833 CAAGTCCAATTAGCGATTTTACTACAA 58.552 33.333 0.00 0.00 0.00 2.41
2774 4516 7.604927 ACAAGTCCAATTAGCGATTTTACTACA 59.395 33.333 0.00 0.00 0.00 2.74
2775 4517 7.971455 ACAAGTCCAATTAGCGATTTTACTAC 58.029 34.615 0.00 0.00 0.00 2.73
2776 4518 9.656040 TTACAAGTCCAATTAGCGATTTTACTA 57.344 29.630 0.00 0.00 0.00 1.82
2777 4519 8.556213 TTACAAGTCCAATTAGCGATTTTACT 57.444 30.769 0.00 0.00 0.00 2.24
2793 4535 4.573607 ACGGAAGACAAGTTTTACAAGTCC 59.426 41.667 0.00 0.00 0.00 3.85
2813 4556 4.649977 TCGTTTGTTTTACAAGTCAACGG 58.350 39.130 11.99 0.00 39.53 4.44
2814 4557 5.735427 ACATCGTTTGTTTTACAAGTCAACG 59.265 36.000 7.72 7.72 39.53 4.10
2815 4558 6.743627 TGACATCGTTTGTTTTACAAGTCAAC 59.256 34.615 8.30 0.00 39.53 3.18
2828 4571 3.988379 AACAATGCTGACATCGTTTGT 57.012 38.095 0.00 0.00 42.79 2.83
2846 4690 7.339466 AGGGGATTATCATATATTGCCGAAAAC 59.661 37.037 0.00 0.00 0.00 2.43
2859 4703 2.912956 GGGAGCACAGGGGATTATCATA 59.087 50.000 0.00 0.00 0.00 2.15
2863 4707 1.707427 GATGGGAGCACAGGGGATTAT 59.293 52.381 0.00 0.00 0.00 1.28
2880 4724 1.747924 TGGTCTCTCTCAAGCTCGATG 59.252 52.381 0.00 0.00 0.00 3.84
2881 4725 2.023673 CTGGTCTCTCTCAAGCTCGAT 58.976 52.381 0.00 0.00 0.00 3.59
2883 4727 1.401552 CTCTGGTCTCTCTCAAGCTCG 59.598 57.143 0.00 0.00 0.00 5.03
2884 4728 2.684881 CTCTCTGGTCTCTCTCAAGCTC 59.315 54.545 0.00 0.00 0.00 4.09
2885 4729 2.726821 CTCTCTGGTCTCTCTCAAGCT 58.273 52.381 0.00 0.00 0.00 3.74
2886 4730 1.134946 GCTCTCTGGTCTCTCTCAAGC 59.865 57.143 0.00 0.00 0.00 4.01
2887 4731 2.445427 TGCTCTCTGGTCTCTCTCAAG 58.555 52.381 0.00 0.00 0.00 3.02
2888 4732 2.593925 TGCTCTCTGGTCTCTCTCAA 57.406 50.000 0.00 0.00 0.00 3.02
2889 4733 2.445427 CTTGCTCTCTGGTCTCTCTCA 58.555 52.381 0.00 0.00 0.00 3.27
2890 4734 1.750778 CCTTGCTCTCTGGTCTCTCTC 59.249 57.143 0.00 0.00 0.00 3.20
2891 4735 1.619432 CCCTTGCTCTCTGGTCTCTCT 60.619 57.143 0.00 0.00 0.00 3.10
2892 4736 0.823460 CCCTTGCTCTCTGGTCTCTC 59.177 60.000 0.00 0.00 0.00 3.20
2893 4737 0.411452 TCCCTTGCTCTCTGGTCTCT 59.589 55.000 0.00 0.00 0.00 3.10
2894 4738 0.823460 CTCCCTTGCTCTCTGGTCTC 59.177 60.000 0.00 0.00 0.00 3.36
2895 4739 1.264045 GCTCCCTTGCTCTCTGGTCT 61.264 60.000 0.00 0.00 0.00 3.85
2896 4740 1.220477 GCTCCCTTGCTCTCTGGTC 59.780 63.158 0.00 0.00 0.00 4.02
2897 4741 0.839853 AAGCTCCCTTGCTCTCTGGT 60.840 55.000 0.00 0.00 43.24 4.00
2898 4742 0.392729 CAAGCTCCCTTGCTCTCTGG 60.393 60.000 0.00 0.00 43.24 3.86
2899 4743 0.612229 TCAAGCTCCCTTGCTCTCTG 59.388 55.000 0.00 0.00 46.38 3.35
2900 4744 0.612744 GTCAAGCTCCCTTGCTCTCT 59.387 55.000 0.00 0.00 46.38 3.10
2901 4745 0.392327 GGTCAAGCTCCCTTGCTCTC 60.392 60.000 0.00 0.00 46.38 3.20
2902 4746 0.839853 AGGTCAAGCTCCCTTGCTCT 60.840 55.000 0.00 0.00 46.38 4.09
2903 4747 0.037447 AAGGTCAAGCTCCCTTGCTC 59.963 55.000 10.55 0.00 46.38 4.26
2904 4748 2.158780 AAGGTCAAGCTCCCTTGCT 58.841 52.632 10.55 0.00 46.38 3.91
2905 4749 4.830573 AAGGTCAAGCTCCCTTGC 57.169 55.556 10.55 0.00 46.38 4.01
2907 4751 0.695347 CTCCAAGGTCAAGCTCCCTT 59.305 55.000 6.49 6.49 41.77 3.95
2908 4752 0.178891 TCTCCAAGGTCAAGCTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
2909 4753 0.035915 GTCTCCAAGGTCAAGCTCCC 60.036 60.000 0.00 0.00 0.00 4.30
2910 4754 0.390472 CGTCTCCAAGGTCAAGCTCC 60.390 60.000 0.00 0.00 0.00 4.70
2911 4755 1.016653 GCGTCTCCAAGGTCAAGCTC 61.017 60.000 0.00 0.00 0.00 4.09
2912 4756 1.004440 GCGTCTCCAAGGTCAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2913 4757 1.004440 AGCGTCTCCAAGGTCAAGC 60.004 57.895 0.00 0.00 0.00 4.01
2914 4758 0.605589 AGAGCGTCTCCAAGGTCAAG 59.394 55.000 3.66 0.00 37.34 3.02
2915 4759 0.318441 CAGAGCGTCTCCAAGGTCAA 59.682 55.000 3.66 0.00 37.34 3.18
2916 4760 1.967535 CAGAGCGTCTCCAAGGTCA 59.032 57.895 3.66 0.00 37.34 4.02
2917 4761 1.446966 GCAGAGCGTCTCCAAGGTC 60.447 63.158 3.66 0.00 35.33 3.85
2918 4762 2.164865 CTGCAGAGCGTCTCCAAGGT 62.165 60.000 8.42 0.00 0.00 3.50
2919 4763 1.447489 CTGCAGAGCGTCTCCAAGG 60.447 63.158 8.42 0.00 0.00 3.61
2920 4764 2.099431 GCTGCAGAGCGTCTCCAAG 61.099 63.158 20.43 0.00 34.87 3.61
2921 4765 2.047844 GCTGCAGAGCGTCTCCAA 60.048 61.111 20.43 0.00 34.87 3.53
2971 4815 2.048503 CGTGGTTCGAGGTGGACC 60.049 66.667 0.00 0.00 42.86 4.46
2972 4816 1.372623 GACGTGGTTCGAGGTGGAC 60.373 63.158 0.00 0.00 42.86 4.02
2989 4833 3.884774 GTGGTGGTGCAGGGGTGA 61.885 66.667 0.00 0.00 0.00 4.02
2993 4837 2.123511 TTTGGTGGTGGTGCAGGG 60.124 61.111 0.00 0.00 0.00 4.45
3000 4844 1.795170 CGCTCTTGGTTTGGTGGTGG 61.795 60.000 0.00 0.00 0.00 4.61
3003 4847 2.192861 TGCGCTCTTGGTTTGGTGG 61.193 57.895 9.73 0.00 0.00 4.61
3006 4850 0.318107 CTTGTGCGCTCTTGGTTTGG 60.318 55.000 9.73 0.00 0.00 3.28
3009 4853 2.555547 GGCTTGTGCGCTCTTGGTT 61.556 57.895 9.73 0.00 40.82 3.67
3010 4854 2.980233 GGCTTGTGCGCTCTTGGT 60.980 61.111 9.73 0.00 40.82 3.67
3015 4859 3.482783 GTCTCGGCTTGTGCGCTC 61.483 66.667 9.73 5.51 40.82 5.03
3024 4868 1.826054 CTCAGATCGGGTCTCGGCT 60.826 63.158 0.00 0.00 39.77 5.52
3025 4869 1.668101 AACTCAGATCGGGTCTCGGC 61.668 60.000 0.00 0.00 39.77 5.54
3027 4871 2.656560 AAAACTCAGATCGGGTCTCG 57.343 50.000 0.00 0.00 34.00 4.04
3034 4878 1.582502 GGCGTCGTAAAACTCAGATCG 59.417 52.381 0.00 0.00 0.00 3.69
3037 4881 0.592637 TCGGCGTCGTAAAACTCAGA 59.407 50.000 10.18 0.00 37.69 3.27
3038 4882 0.706729 GTCGGCGTCGTAAAACTCAG 59.293 55.000 10.18 0.00 37.69 3.35
3039 4883 0.030504 TGTCGGCGTCGTAAAACTCA 59.969 50.000 10.18 0.00 37.69 3.41
3040 4884 0.706729 CTGTCGGCGTCGTAAAACTC 59.293 55.000 10.18 0.00 37.69 3.01
3041 4885 0.311790 TCTGTCGGCGTCGTAAAACT 59.688 50.000 10.18 0.00 37.69 2.66
3042 4886 1.343506 ATCTGTCGGCGTCGTAAAAC 58.656 50.000 10.18 0.00 37.69 2.43
3049 4893 4.657075 TTTCTTTTAATCTGTCGGCGTC 57.343 40.909 6.85 0.72 0.00 5.19
3053 4897 6.494893 TCCACATTTCTTTTAATCTGTCGG 57.505 37.500 0.00 0.00 0.00 4.79
3055 4899 9.912634 TTGATTCCACATTTCTTTTAATCTGTC 57.087 29.630 0.00 0.00 0.00 3.51
3070 4930 2.684881 GTCGCTGGATTTGATTCCACAT 59.315 45.455 0.00 0.00 40.90 3.21
3077 4938 3.317711 TGTTTGTTGTCGCTGGATTTGAT 59.682 39.130 0.00 0.00 0.00 2.57
3083 4944 2.223688 CCATTTGTTTGTTGTCGCTGGA 60.224 45.455 0.00 0.00 0.00 3.86
3087 4948 2.803451 TGTCCATTTGTTTGTTGTCGC 58.197 42.857 0.00 0.00 0.00 5.19
3090 4951 7.823799 AGAGAATTTTGTCCATTTGTTTGTTGT 59.176 29.630 0.00 0.00 0.00 3.32
3120 4996 9.546428 AATCAAGTTTTTCCTTTTTGGATGTAG 57.454 29.630 0.00 0.00 45.68 2.74
3126 5002 9.689976 AAACAAAATCAAGTTTTTCCTTTTTGG 57.310 25.926 9.27 0.00 37.93 3.28
3135 5011 7.014702 CGAGCACAAAACAAAATCAAGTTTTT 58.985 30.769 0.00 0.00 43.26 1.94
3136 5012 6.147000 ACGAGCACAAAACAAAATCAAGTTTT 59.853 30.769 0.00 0.00 45.77 2.43
3145 5021 4.167554 AGAACACGAGCACAAAACAAAA 57.832 36.364 0.00 0.00 0.00 2.44
3146 5022 3.840890 AGAACACGAGCACAAAACAAA 57.159 38.095 0.00 0.00 0.00 2.83
3147 5023 3.497118 CAAGAACACGAGCACAAAACAA 58.503 40.909 0.00 0.00 0.00 2.83
3148 5024 2.730715 GCAAGAACACGAGCACAAAACA 60.731 45.455 0.00 0.00 0.00 2.83
3149 5025 1.846175 GCAAGAACACGAGCACAAAAC 59.154 47.619 0.00 0.00 0.00 2.43
3176 5052 6.428083 TGTCACTTTCAGAATAGTTGGGTA 57.572 37.500 0.00 0.00 0.00 3.69
3185 5061 4.279169 CACCACCAATGTCACTTTCAGAAT 59.721 41.667 0.00 0.00 0.00 2.40
3222 5098 0.740149 TTGCTGCACAAGTCCAACTG 59.260 50.000 0.00 0.00 33.24 3.16
3225 5101 3.456280 GAAATTTGCTGCACAAGTCCAA 58.544 40.909 0.00 0.00 40.06 3.53
3263 5139 1.006086 TATATATGCGTGCATGCGGC 58.994 50.000 25.05 22.42 45.13 6.53
3264 5140 2.221749 GGATATATATGCGTGCATGCGG 59.778 50.000 25.05 8.77 37.82 5.69
3278 5154 4.322499 CCTTCCTACAAACGCGGGATATAT 60.322 45.833 12.47 0.00 0.00 0.86
3280 5156 2.224209 CCTTCCTACAAACGCGGGATAT 60.224 50.000 12.47 0.00 0.00 1.63
3281 5157 1.137479 CCTTCCTACAAACGCGGGATA 59.863 52.381 12.47 0.00 0.00 2.59
3282 5158 0.107848 CCTTCCTACAAACGCGGGAT 60.108 55.000 12.47 0.00 0.00 3.85
3287 5163 0.872388 CACCACCTTCCTACAAACGC 59.128 55.000 0.00 0.00 0.00 4.84
3359 5235 4.260743 GGAAATTTCCAGTGCAAGCAAAAC 60.261 41.667 28.76 0.00 46.76 2.43
3363 5239 2.818130 GGAAATTTCCAGTGCAAGCA 57.182 45.000 28.76 0.00 46.76 3.91
3399 5278 0.670162 CTGAACCAACCAACCAGCAG 59.330 55.000 0.00 0.00 0.00 4.24
3402 5281 0.954452 GAGCTGAACCAACCAACCAG 59.046 55.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.