>input_sequence_51904
--------------------------------------------------------------------------------
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-----------------------------ATGGGCTGCGTGTTGTCATCGCCGAGGCGGTCCAGGCGCACGCCGGGGTAC
GAGGAGCCCACCGTCCTCGCCTCCCAGACCTCCTGTACGTCAGCCCATACTCCTCCTTGATTTCCTCTGTACTACCTCA-
--ACTGAATGGAAGCTCATGTCGCATTGCGTGTGCGTGGTTGCAGTCACGGTGAACGAGGTGGAGGCGCTGTACGAGCTC
----------------------------------------------------------TACAAGAAGCTCAGCTACTCCA
TCTTCAAGGACGGCCTCATCCACAAGGTAGTTGAGGTCCT-----CCC---------------------CACAACCGCC-
---ATGGATCCATCTTCAAAGACTGCGTGCTCTCGTCTCATCC----------GCTTGCTTGGTTCA------TGTCAGG
AGGAGTTCCGGCTGGCGCTGTTCAGGACCAGCAAAGGGGCGAACCTCTTCGCGGACAGGGTGTTCGACCTCTTCGATCTC
AAGCGCAACGGGGTCATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCGGACAA
GACCGCGTGTATG-----------------------------CCCCTACGCCTCTTGTCTGCTAGTCTTTTCTGTCCATT
CGTCGTCTTT-----GCTCTGCAAA------AATCAACA-TCTCTGGTTTGTCACCATCCTTATTTGCATTTGTAGTTGC
CATCTCTCTCATTCGTCACTATCCTA----TTTTGTAGTTGCATTCAAGTTGTATGATTTGAGGGGGACAGGCTACATCG
AGAAAGAAGAGGTACTGCTAAATAAGTTTG------------------CACCTTATTTGCAT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGTCCATGACCTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCCTGATGAATTTTGGTGAACTGATTGCCTCAACTGTTGTTGACACGTACAG
CTCCGGGAGATGGTGGTGGCACTCCTCGACGAGTCCGACCTGTGCCTCTCCGACAGCGCCGTCGAGGAGATCGTCGACAA
TGTATGTGACCAACAAGATAGATA----GATACTTGTCTCCAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GTATTTATTCAGTCTCTCTTTGAGAAGTGTTTTCTTGTTTTCCTTCTAA-------
--------------------------TAACA--T--GCCCTGTGCTGCTCTGCTCCTTTTGGA-CTGTCAGACGTTCAGT
CAAGCAGACTCGAATGGCGACGACAGGATAGACCCCAAGGAGTGGGAGGAGTTCGTCAAGAAGAACCCGGCATCACTCAG
GAACATGTCACTGCCCTATCTCCAGTGAGTAC--TCATGTGCCGCTCTACTCTTCAGCTTCTCAGGCTCTCCAAGTTCCT
TTACGCTTCTCCTTTATGGGCTGGATGGTCTGTAATACACTTGGCGCGCTTGTTCTGAAACACAAACGCCATATGTGAAC
TGGAGAGCAGTAGAGATCTTCATTTGCTTTTGCCATTTACCAAATATTCAACTGATCTGACTGCTGCTGTGGGTGATGTT
GTTTGTTCAGGGACATTACGACGGCGTTTCCGAGCTTTGTGATGCATTCGGAAGTCGACGATTACAGTGGAATCAGCAAA
TAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>chr1D_1_TraesCS1D01G358400
ATTTTTTAGGGCCAAAAAAGGAAGCAAAATTTAAGAAAGGGCCAAATAAAGAATTTTGTCCCAAAAGCGTCCGCTCGTGC
GAGCCCCGACCACGCCCGTCCACCCGCCGCAACTGACGTCGCCGGCGCCGGGATCGGCGAGCGCGCGCCCGCACGTGGCT
CTCCCGGCGCGATCTGGTGGTGACCGT------CCCTAGGAAAAAGGAGCATTTTGGTTAGAAAGAGGGAGAGAAAAACA
GTTGAAAGCAGCGGGAATCAAGGGGATCCAT----CCAGCCCGTCCAATCTCGAGCCCCCGTGCAATCAAGGGGCC----
----GCTGACGGTGGGACGCCGCTTTAGATCAGAGGCCACCGGACGGCGACGGAAAGT--------GCGGAGCCACGAGG
CGGCGGCCGGCGTGGCGCGACGTGGCCGAACCAGGCGCTCTGGCGTCGCGTCATCCCGTGAACCAAACGAACCAGCCGCT
CGGGAACTCCTTTCCGCGCCAT-----CCTTTTATTTACCACAGCAGCAGCGGTAGGCGGGCGCACCGCTCTCCGCGCAG
CTAGATTCGGCGCACCTGTCGCCGTCCGGAAGCCCCGC--------------------TACCCCGGCGAGAGCTCAACGG
GGAGAAGCCATTTGACTTGCCGCGCAATACTATATCTATATTACGCCCCCGCCAGGGGACAGACCCAGAGGTTGAGAGTT
GAGACGCAAAGACAAAGGAGAGCCGTGTCGCCGACGAGGACGGAC--------GGAGCAGCCGGCCGAAAGATCTTTCTC
TTCCCCCTTCCTTCCGGCCAAAGCAGCACCGCAGGCGGCAGGGTTGGACACTCCAT----CGTCTTCGCCTCAGGTCAGT
CCGATTGCTTGCTTGCTGTTTTCGTGCTGGTTATGCGTTTGCGTGTTGCGCCGGCGCGGCGTGCCCGATCGATCGGCTTG
GCTGTGGC---CTGTAGAGTGCAAGATCTCTTCTCTCGCCGGCGCGGCGTGCCCGATCGATCGGCTTGGCTTCCGCCTCC
CGCCGCCGGA---GCCGGACAAGCAGCGGATGGGCTGCGTGTTGTCATCGCCGAGGCGGTCCAGGCGCACGCCGGGGTAC
GAGGAGCCCACCGTCCTCGCCTCCCAGACCTCCTGTACGTCAGCCCATACTCCTCCTTGATTTCCTCTGTACTACCTCA-
--ACTGAATGGAAGCTCATGTCGCATTGCGTGTGCGTGGTTGCAGTCACGGTGAACGAGGTGGAGGCGCTGTACGAGCTC
----------------------------------------------------------TACAAGAAGCTCAGCTACTCCA
TCTTCAAGGACGGCCTCATCCACAAGGTAGTTGAGGTCCT-----CCC---------------------CACAACCGCC-
---ATGGATCCATCTTCAAAGACTGCGTGCTCTCGTCTCATCC----------GCTTGCTTGGTTCA------TGTCAGG
AGGAGTTCCGGCTGGCGCTGTTCAGGACCAGCAAAGGGGCGAACCTCTTCGCGGACAGGGTGTTCGACCTCTTCGATCTC
AAGCGCAACGGGGTCATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCGGACAA
GACCGCGTGTATG-----------------------------CCCCTACGCCTCTTGTCTGCTAGTCTTTTCTGTCCATT
CGTCGTCTTT-----GCTCTGCAAA------AATCAACA-TCTCTGGTTTGTCACCATCCTTATTTGCATTTGTAGTTGC
CATCTCTCTCATTCGTCACTATCCTA----TTTTGTAGTTGCATTCAAGTTGTATGATTTGAGGGGGACAGGCTACATCG
AGAAAGAAGAGGTACTGCTAAATAAGTTTG------------------CACCTTATTTGCAT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGTCCATGACCTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCCTGATGAATTTTGGTGAACTGATTGCCTCAACTGTTGTTGACACGTACAG
CTCCGGGAGATGGTGGTGGCACTCCTCGACGAGTCCGACCTGTGCCTCTCCGACAGCGCCGTCGAGGAGATCGTCGACAA
TGTATGTGACCAACAAGATAGATA----GATACTTGTCTCCAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GTATTTATTCAGTCTCTCTTTGAGAAGTGTTTTCTTGTTTTCCTTCTAA-------
--------------------------TAACA--T--GCCCTGTGCTGCTCTGCTCCTTTTGGA-CTGTCAGACGTTCAGT
CAAGCAGACTCGAATGGCGACGACAGGATAGACCCCAAGGAGTGGGAGGAGTTCGTCAAGAAGAACCCGGCATCACTCAG
GAACATGTCACTGCCCTATCTCCAGTGAGTAC--TCATGTGCCGCTCTACTCTTCAGCTTCTCAGGCTCTCCAAGTTCCT
TTACGCTTCTCCTTTATGGGCTGGATGGTCTGTAATACACTTGGCGCGCTTGTTCTGAAACACAAACGCCATATGTGAAC
TGGAGAGCAGTAGAGATCTTCATTTGCTTTTGCCATTTACCAAATATTCAACTGATCTGACTGCTGCTGTGGGTGATGTT
GTTTGTTCAGGGACATTACGACGGCGTTTCCGAGCTTTGTGATGCATTCGGAAGTCGACGATTACAGTGGAATCAGCAAA
TAATAGCCGTGCCTGCCTGCCTGCCTGCCTCATGACCCGTCCCCGGCCATGTATGAATATGCTCTTGGGACTGGGAGGCC
GTGC---ATTCAGAAGTGCGTGAGCTGCAACCGGAAGGCCTGGAGCTCGAATGGGAGGAGAACGCAAGGGAGCCAATCTG
CCGGTGAGCGTGACTGCGTGAGATGATGACCACCGGACGATGACTTCATC-CCATGCGAGATAGGCATCAGATCAGACTG
TCTGAGGTTAACTAAGAAATGGGCTTTTTTTGTACCTCCGTAGTAAGTACGAGAGGTTATCAAAACACCGATCGAGCAGG
TGACTAGGCAGTGACGAGTGTCTAGCGTAGGTTGTTGTAGTAAAATCGCTAATTGGACTT-GTAAAACTTGTCTTCCGTT
GACTTGTAAAA---------------------------------------------------------------------
--------------------------------CAAACGATGTCAGCATTGTTTTCGGCAATATATGATAATCCCCTGTGC
TCCCATCGAGCTTGAGAGAGACCAGAGAGCAAGGGAGCTTGACCTTGGAGACGCTCTGCAGCGTCGCCGGTCACCACCAC
CTTCTTGCGCTCCAGGTCCACCTCGAACCACGTCACCCCTGCACCACCACCAAACCAAGAGCGCACAAGCCGAGACCCGA
TCTGAGTTTTACGACGCCGACAGA----------------TTAAAAGAAA-TGTGGAATCAAATCCAGCGACAACAAACA
AATGGACAAA---------------ATTCTCTATTCTACATCCAAAAAGGAAAAACTTGATTTTGTTTTGTGCTCGTGTT
CTTGCCTCTTTTACCCAACTATTCTGAAAGTGACATTGGTGGTGCGCAGCAGCAGACCAGTTGGACTTGTGCAGCAAATT
TCCATGACAGGATGCCCCGCCGCATGCACGCATATATATCCCGCGTTTGTAGGAAGGTGGTGGCATGTTTCATTCACTTT
TAAGAAAGCTGTGTAGTTAGTATCACTCCACCTTGTTTTGCT---TGCACTGGAAATTTCCATCATGCGCGGAAAGGCTG
CTGGTTGGTTGGTTCAGCTCATTT
>chr1B_113
--------------------------------------------------------------------------------
--------------------------------CTGACGTCGCCGACGCCGGGTTCGGCGAGCGCGCGCCCGCACGTGGCT
CTCCCGGCGCCATCTGGTGGCGACCGTCCCTAGCCCTAGGAAAAAGGAGCATTTTGGTTATTAGGA---AGAGAAAAACA
GTTGAAAGCAGCGGGAATCAAGGGGATCCATCCAGCCAGCCCGTCCAATCTCGAGCCCCCGTGCAATCAGGGGGGCCGCT
TTCGGCTGACGGTGGGACGCCGCTTTAGATCAGAGGCCACCGGACGGCGACGGAAAGAAAGCACGGGCGGAGCCCCAAGG
CGGCGGCCGGCGTGGCGCGACGTGGCCGAAGGAGGCGCTCTGGCGTCGCGTCATCCCGTGAACGAAACGAACCAGCCGCT
CGGGAACTCCTTTCCGCACCACCCTCCCCTTTTATTTACCACAGCGCCGCT-----------------------------
CTAGATTCGCCGCACCTGTCGCCGTCCGGAAGCCCCGCAGCCCAGACGCGCGATCGCCTACCCCGGCGAGACCTCAACGG
GAGGAAGCCATTTGACTTGCCGCCCCATACTATATCTATATTACGCCCCCGCCAGGGGACAGACGCAGAGGTTCAGAG--
-----GCAAAGACAAAGCAGAGCCGTGTCGCCGACGAGGACGGACGGACGGACGGAGCAGACGGCGCAAAGATCTTTCTC
TTCCCCCTTCTTTCCGGCCAAAGC------------GGCAGGGTTGGGCCCTCGATCGTCCGTCTTCGCCTCAGGTCAGT
CGGA----TTGCTTGCTGTTTTCGTGCTGGT---GCGTTTGCGTGTTGCGCCGGACCTTGATGGATGGTCTGTTTCTGTT
ACAGTCAACGGCTGTAGAGCGCAGAATCCCTTCTCTCGCCGGCGCGGCGTGCTCGGTCGATCGGCTTAGCTTCCGCCTCG
CGCCGGTACCCTCGCCGGACAAGCAGCGGATGGGCTGCGTGTCGTCGTCGCCGAGGCGGTCCAGGCGCGCGCCGGGGTAC
GAGGAGCCCGCCGTCCTCGCCTCCCAGACCTCCTGTACGTCAGCCCATACTCCTCCTTGGTTTCATTTTCCTCTGCACCT
TGACTGAATGGAAGCTCATGTTGCATTGCGTGCGCGTGGTTGCAGTCACGGTGAACGAGGTGGAGGCGCTGTACGAGCTC
----------------------------------------------------------TACAAGAAGCTCAGCTACTCCA
TCTTCAAGGACGGCCTCATCCACAAGGTT----AGCTCTGCTCCACCC---------------------CACGACCGCCA
TGGATGGATCCATCTTCAAAGGCCGCGTCCACTCAGCTCATCTCATCTCATCTGCTTGGTTGGTTCATCTCACTCTCAGG
AGGAGTTCCAGCTCGCCCTCTTCAGGACCAGCAAAGGGCCGAGCCTGTTCGCGGACAGGGTGTTCGACCTCTTCGATCTC
AAGCGCAACGGCGTCATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCGGACAA
GACCGCGTGTATG-----------------------------CCCCTACGCCTCTTGTCTGCTCGTCTTTTCTGTCCATT
CATCGTCTTT-----GCTCAGCAAA------AATCGCCA-TCTCTGGTTTGTCACCATACTT------ATTTGTAGTTGC
CATCTCTCTCATTCGTCACTATCCTACTTATTTTGTAGTTGCATTCAAGTTGTATGATTTGAGGGGGACAGGCTACATCG
AGAAAGAAGAGGTACTGCTAAATAAGTTTGTTGGCATTGTTTGTTTTGCACCTTATTTGCAC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGTCCATTGGCTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCC---TGAATTTCGGTGAACTGATTGCCTCA----------ACACGTACAG
CTCCGGGAGATGGTGGTAGCACTGCTCGACGAGTCCGACCTGTGCATCTCCGATAGCGCAGTCGAGGAGATCGTTGACAA
TGTATGTGACCAACAAGATAGATAATTAGATACTTCTCTCTAAGTATTTGTTAAAATATGTTGCTTAGTCATTTTCACTA
GTTCCAACTTTTAAGAAACTTGGCATCAGTTTAATATGATATCAAAGCCACAAGGTCTTGGGATCAAATCCTGGCCAACG
TACTATTTAATATAAAAATAGTTGAGTATTTGTTAAAATATATTGCATGGTGATTTTCATTAGTTCAGACTTTTGAGAAA
CTTGGCTAGCGCATCAGTTCAATAGTATTTATTCACTCTTGCTTTGGAAACTGTTTTCTGATCT----------------
----------------------CTTCTAACA--T--GTTCTGTGCTGCTCTGCTCCTTTTGTTTCTGTCAGACGTTCAGT
CAAGCAGACTCGAATGGCGATGACAGGATAGACCCCAAGGAGTGGGAGGAGTTCGTCAAGAAGAACCCAGCATCGCTGAG
GAACATGTCACTGCCCTATCTCCAGTGAGTAC--TCATCTGCCGCTCTACTCTTCAGCTTCTCAGGCTCTCCAAGTTCCT
TTGCGCTTCTCCTTTATGGGCTGGATGGCCTGTAATACACTTGGCGCTCTTGTTCTGAAAGACAAACGCCATATGTGAAC
TGGAGAGCAGTAGAGATGTTCATTTGTTTTTGCCATTTACCAAATTTTCAGGTCATCTGACTGCTGTTGTGGTTGATGTT
GTTTGCTCAGGGACATTACAACGGCGTTTCCGAGCTTTGTGATGCATTCGGAAGCCGACGATTACAGCGGAATCAGCAAA
TAATAACCGGGCCTTAG--------TGCCTCATGATCCGCT-CCGGCTATCTATGAACATGCTGCTGGGAGGCTGGCTGC
GCGTTCAATTCAGAGGCGCGTGAGCTGCAACCGGAAAGCCCGGAGCTCGAATGGGGGGAGAACGCAAGGGAGCCGATCCG
GTAGCCGGTGA----GCGTGAGATGATGTCCACCGGACGATGACTTCATGTCCATGCGAGATGGGCGTCAGACTATGTA-
TCTGAGGTTAACTAAGAAATTGGCTTTTTTTGCGCCTACGTAAGTACGC--AGAGGTTGTCAAAACACCGATCGAGCAGG
TGACTAGGCAGTGACTAGTGGCTTGCTTAGATT------GTAAAATCGCTAATTAGACTTTGTAAAACTTGTCTTGACTT
GACTTGTAAACCTTGTCCGTTTCGTCGAAGAGTACCATTTCTCCTTTGTTGGCTGTGAACATATGGATAGGAACACAGAT
GGACACAGAGAAAGCAACTCATTGCCTGTTTGCAAACGATGTCAGCATTATTTTCGGCAATACATGCTAATCCTCTGTGC
TCCTGT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CGACACCGTAACCTAGCCGACAAATTTAAGAAGAAGCA---GAGTCAAAGCCAACGCCAACAAGCA
AATGGACACCTTTTT--------CTATTGTCTATTGTACATAGAAAAAGGGG-AACTTGA-----TTTTGTGCTCGAGCT
CTTGCCTCTTT-ACCAG-CTGCTCTGAAAGTGACATTGGTGGTGCGCAGCAGCAGACTAGCTGGACTTGTGCAGCAAATT
TTGACGACAGGATGCCCCC----------GCATGTT--TCCCCCGTTTTCAGGAAGGTGGTGCCATGTTTCATTCAC-TT
TAAGAAAGCTGTCTAGTTAGTATCACTCCACCTTTTTTACTCCCGTGCACTGGAAATTTCCATCATGCGCGGAA------
------------------------
>chr1B_1162
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------GCGTGCATGCAGTCACGGCGAACGAGGTGGAGGCGCTGTACGAGCTC
----------------------------------------------------------TACAAGAAGCTCAGCTACTCCA
TCTTCAAGGACGGCCTCATCCACAAGGTT----AGCTCCT-----CCC---------------------CACAACCTCC-
---ATGGATCCGTCTTCAAAGACCGCGTGCTCTCATCTCATCT----------CCATGGTTGGTTCA------TCTGAGG
AGGAGTTTCGGCTCGCACTGTTCGGGACCAGCAAACGAGACAACCTCTTCGCAGATAGGGTGTTCGACCTCTTCGATCAG
AAGCGCAACGGGGTGATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCGGACAA
GACCACGTGTAGTGTCTCGTAGAAGATTCTTCTGCCTCTGCACGTCTTGTCCATTCG----TCCCAATTTGCTGTCCGTT
TCATCC-------------------------------------GCC----------------------------------
--------------------ATCCTC----TTTTGCAGTTGCATTCAAACTGTACGATTTGAGGAGCACAGGCTACATCG
AAAAAGAAGAGGTAA---------------------------------------ATTCATTCTTAATGTTCATGAAAATT
CAGAACAACTCA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TG
AACATTAAGAATGATTTTACCTCTTCTTTCTCGATGTAGCCTGTGCCCCTCAAATCGTACAGTTTGAATGCAACTGCAAA
AAAAATCGTACAGTTTGCCCCTCAGGAGAACTAGGCTGTAGCCTAGTGGCAAGGGAGCGCAGTGGCGTCTCCAGCAACCA
GGGTTCGAGCCACGTCGGGGACGAATTTCTGGTTTCTCACAAGGGATGCTTCTCCTATATCAATAAACCATGGGTGCTAG
TGCCCATGAGTTTCATCTTTTTCATGAGTTG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TTC---TGAATTTTAGCCTGACCAAAC----------TGTCGACATGTACAG
CTTAGGGAGATGGTGGTGGCACTTCTCGATGAGTCGGACCTATGTCTCTCGGATAGCGCCGTCGACGAGATCGTTGACTA
TGTAATGTAACTTGACGAGACGGACTAC-----------------------T----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TCTTCCCTTTACAAGTATTCAGTTTTCATCCTCCTAA-------
--------------------------TAATAATATAGTCCTGTGGTGCTCTGTTCCTTTTTGA-GTTTCAGACGTTCGGT
CAAGCAGACTCGAACGGTGATGGGAGGATAGACCCCAAGGAATGGGAGGAGTTTGTCAAGAAGAACCCAACGTCACTCAG
GAACATGTCACTGCCCTATCTCCAGTGAGTAG--TCA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr1D_1169
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------TGCAGTCACGGTGAACGAGGTGGAGGCGCTGTACGAGCTC
----------------------------------------------------------TACAAGAAGCTCAGCTACTCCA
TCTTCAAGGACGGCCTCATCCACAAGGTAGTTGAGGTCCT-----CCC---------------------CACAACCGCC-
---ATGGATCCATCTTCAAAGACTGCGTGCTCTCGTCTCATCC----------GCTTGCTTGGTTCA------TGTCAGG
AGGAGTTCCGGCTGGCGCTGTTCAGGACCAGCAAAGGGGCGAACCTCTTCGCGGACAGGGTGTTCGACCTCTTCGATCTC
AAGCGCAACGGGGTCATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCTGAAAA
GACCGCATGTACG-----------------------------CCTCCTGTCCATTGCTCGCTCTTACTTTGCTGTCCATT
CATCTTCTTG-----TCCTCCCTGTGAAACCAATCAAAAATCTTTCGTTTGTCTCCATCATCGTCCTC------------
-------------------------------TTTGCAGTTGCATTCAAGCTGTACGACCTGAGGGGGACAGGCTACATCG
AGAAAGAAGAGGCAA---------------------------------------GTACTAAATCA--TTTCT-CATCCAA
CCTAGTACATGGTGCACTTTATTGTAAGGTAC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TAACGTCGACGCGTTGTTTC---TGAATTCTAAATT----TATAATCAACACATTGCCTGC----ACAG
CTCCGGGAGATGGTGGTGGCGCTTCTTGATGAGTCCGACCTATGTCTCTCTGACAGCGCCGTCGAGGAGATCGTCGACAA
TGTATGTAATCAACAAGATA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr1B_1169
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TGCAGTCACGGTGAGCGAGGTGGAGGCGCTGTACGAGCTC
----------------------------------------------------------TACAACAAGCTCAGCTACTCCA
TCTTCAAAGACGGCCTCATCCATAAGGTAA--------------ACTC---------------------CACGACCGCT-
---ATGGATCCATCTTCAAAGACTGCATGCTCCCATCTCATCATATCTCATCTGC-------GTTCA------TCACAGG
AGGAGTTCCGGCTCGCCCTGTTCCGGACCAGCGAGAGAGCCAACCTCTTTGCGGACAGGGTGTTCCACCTCTTCGATCTC
AAGCGCAACGGGGTCATCGAGTTCGGCGAGTTTGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCTTGTATCAGACAA
GGCCGCATGTATTGTCCATTCCTCTGCTC--------CTACACCTCTTGTCCATTCG----TCTTAATTTGATGTCCATC
AATTATCATG-----CCAGAGTAGA------TAACCATTTTCGGCC----------------------------------
--------------------ATCCTC----TCCTGCAGTTGCATTCAAATTGTACGATTTGAGGGGCACAGGCTACATCG
AAAAAGAAGAGGTAA---------------------------------------ATTCGTAA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGTTCATGAGTTG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TTC---TGAATTCTAGTATAACTTGACTGTTGA----------C----ACAG
CTTAGGGAGATGGTGGTGGCACTTCTTGACGAGTCGGACCTATGTCTCTCGGATAGCGCTGTTGATGAGATCGTTGACAA
TGTAATTA------ACGAGATAGG----GCTACTTCTTTCCAA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------ACATTCAGTCTTTTAGGAGTAAATAGTAT-----TTGGTTTCCTTCTTCTTTTTTG
AACAAAATATATAATCTCCTTCCTTCTAACA--T--GACCTGTGCTGCTCTGCTCCCTTTGGG-CTGTCAGACGTTCAGT
CAAGCAGACACGAATGGCGATGGCAGGTTAGACCCCAAGGAGTGGGAGGAGTTTGTCAAGAAGAACCCGACATCACTCAG
GAACATGTCACTGCCCTATCTCCAGTGAGTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr1B_1169
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TGCAGTCACGGTGAACGAGGTGGAGGCGCTGTACGAGCTC
----------------------------------------------------------TACAAGAAGCTCAGCTTCTCCA
TCTTCAAGGACGGCCTCATCCACAAGGTGATTGAAGTCCT-----ACCATTA---CCATACATCGATCTCA---------
---------------------ACTGCGTCCTCTGAATT------------TCTGGTCGGTTGGTTCA------TGTCAGG
AGGAGTTCCGGCTGGCCCTGTTCAGGACCAGCAAAGGGGCGAACCTCTTCGCGGACAGGGTGTTCGACCTCTTCGATCAG
AAGCGCAACGGGGTCATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCTGAAAA
GACCGCCTGTACG-----------------------------CCTCCTGTCCATTACTCGCTCCTAATTTGCAGCCCATT
CATCTTCTTG-----TCCTCCCTATGAAACCAATCAAAA-TCTTTTGTTTGTCTCCATCATCGTCCTC------------
-------------------------------TTTGCAGTTGCATTCAAGCTGTACGATCTGAGGGGGACAGGCTACATCG
AGAAAGAAGAGGTAA---------------------------------------ATACTTAAATCATTTTCT-CATCCAA
CCTAGTACATGGTGCCCTTTATTGTAACTAGGGGTGGACGCGGTCCGGGCCGGTCCGGTCCCTGACCGAGCCCTGCTTTG
GACCGGCCGCGGCCGGTCCGGTCCGGACCGGACCGAAGTGGCTGGCGGTTCATATTTTCAGGACCGGACCGGCTGCAGCA
AAGCTCGGTCAAGACCGAGAGGACCGACTGGACCGACCGAATTTGTATCCTGGGAGTGCGCTGGGAGGATTTTTGGCTCT
GTTTAGCCACTGTTTAGTCATCCTTTTATATTTTGTAAAGCAAATGGACCAAGAATACAGCATATATGAGACTAATTTTG
AACATTTAGAATGCTTGTTTCAAAAGAGGATGGAATCGACAATAAATAAGCAAGTTATGCTATAGATTTACCATGACAAG
CTGAAGAATGGATGAAAGATGATGTAAGAAAATTTTGGAATTCAGTACTAACTGCTAACAATGGTGTATTCAACACTCAA
TAGATCAGTACGAACTGCTAACAATTCAGTACTAATTGTTGAAAATTTTGGCACTGAATACCTCGGTCAGAGATGGGATA
ATGCAGAGGAGAGGACAGAGGAGATCGAACAGGTGCAGGGGAGACGGCGTGCAGGTGCAGGCACATCCTCCCCCTCCTCC
AGCTTCGTGGTCATCTCTTATCGACAGCAGCGAGCCGGCGAGGAGGTGGTCGACGGCGGACAGGTGGAGACGGCGGCGGT
CGACCCTCAACTCGACGGCAGGCAGCTGCACGCGCTGCGCTCCCTCCTCTTCTCCTCTTTCCCTCCAGTACTGCGGCTTC
GTGGTCTACGGCGAGGTGGTTGACGACGGCAGCACCAGGAGGTGGTCGACGACGGAAGCCGGCGGAGGCGGCGCTCGACC
GCTCGGGGTCGGGGGAGGGGAATGGACGGGGTTGCGTACTTGAACTCTCTGCTTTGCCTTTATTGCCGTCTGCGCTAGGC
TCTATATGGTTTTTTTTTTGACGCACTGGGCTCTATATGGGTTGCTGTGGGCTGTGGCCTGTGAGCTGGGCTAAATGTCG
CGGTCTGAACGAGCGGACCGAGCTTTGACCGGACCGGACCGAGAAAATTTCGGTCCATTTTCTAGGGACCGGACCGATGA
CTTTTTTCAGCGGGCCTGGACCGAGCCTGCCTGCACCGAGCGGGCCGCGAGCCGGACCGAAGGACCGGACCGTTTCGTCC
ACCCTGAATTGTAACGTCGAC------TTTC---TGAATTCTAAACT----TATAATCAACACATTGCCTGC----ACAG
CTCCGGGAGATGGTGGTGGCACTTCTTGATGAGTCCGACCTATGTCTCTCGGCCAGCGCCGTGGAGGAGATCGTCGATAA
TGTATGTAATCAACAAGATATATTCAGGTTCCCTAAAAAAAACAAGATATAT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TCAGTCATTCGGAACTATTTTCCTGTTTTCCTTCTAA-------
--------------------------CATGTTCT--GTTCTGTGCTGCTCTGCTCCTTTTGGA-CTTTCAGACGTTCAGT
CAAGCAGACTCGGATGGTGATGGCAGGATAGACCCCAAGGAGTGGGAGGAGTTTGTCAGGAAGAACCCGGCATCACTCAG
GAACATGTCACTGCCCTATCTCCAGTGAGTAC--TC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr1A_1169
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TGCAGTCACGGTGAACGAGGTGGAGGCGCTGTACGAGCTC
TACAAGAAGCTCAGCTTCTCCATCTTCAAGGACGGCCTCATCCACAAGGTACGAGCTCTACAAGAAGCTCAGCTTCTCCA
TCTTCAAGGACGGCCTCATCCACAAGGTACGAGCTCTACAAGAAGCTCAGCTTCTCCTTACATCCATCTCACGAGCTCC-
---ATGATCATCTTGTCCGATGATCTCGCCCCTGGGTTCTGAACTTGTGG-CTGGTTGTTTCGTTCA------TGTCAGG
AGGAGTTCCGGCTGGCTCTGTTCAGGACCAGCAGAGGGGCGAACCTGTTCGCGGACAGGGTGTTCGACCTCTTCGATCTC
AAGCGCAACGGCGTGATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCTGAAAA
GACCGCGTGTACG-----------------------------CCTCCTGTCCATTGTTCGCTCCTAGTTTGCCGTCCATT
CATCTTCTTGTCCTCTCCTCCCTATGAAACCAATCAAAAATCTTTCGTTTGTCTCCATCATCGTCCTC------------
-------------------------------CCTGCAGTTGCATTCAAGCTGTACGATCTGCGGGGGACAGGCTACATCG
AGAAAGAAGAGGCAA---------------------------------------GTACTAAATCA--TTTCCGCATCCAA
CCTAGCACATGGCGCACTTTATTGTAAT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GTCGACGCGTTATTTC---TGAATTCTAAAAATTTATATAATCAACACATTGCCTGC----ACAG
CTCCGGGAGATGGTGGTGGCGCTTCTTGATGAGTCCGACCTATGTCTCTCCGATAGCGCCGTCGAGGAGATTGTCCATAA
TGTATGTAATCAACAACATTGATACTTCC--------CTCCAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GTA-----------------TCGGAGGTATTTTCCCGTTTTCCTTCT---------
--------------------------TAACA--T--GTTCTGTGCTGTTCTGCTCCTTTTGGA-CTGCCAGACGTTCAGT
CAAGCAGACTCGGATGGTGATGGCAGGATAGACCCCAAGGAGTGGGAGGAGTTTGTCAAGCAGAACCCAGCGTCGCTGAG
GAACATGTCACTGCCCTATCTCCAGTGAGTACCATCATCTGCTGCTCTACTTTC--------------------------
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>chr1A_2938
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------------------------------------------------------------GCGGCGCCGGTCACCACCAC
CTTCTTGCGCTTCAAATCCACCTCGAACCATGCCACGCCTGCAGCAGCATCA--CCAACAGCGCACACTCTGAGACCTGA
A-----TTTTACCACGACACCATAACCCAGCCGACAAATTTTAAAAGAATGTGTGGAGTCAAAGCCGACGCCAACAAATG
AATGGACACCTTTTTCTTATTGCCTATTGCATATTATAGATAAAAAGA----AAACTTGA-----TTTTGTGCTCGTGTT
TTTGCCTCTTT-ACCCAACTGTTCTGAAAGTGACATTGGTGGTGCGCAGCAGCAGACTAGCTGGACTTGTGCAGCAAATT
TCCACGACATGATGCCCCAACGCATGCAGGCATGTT--TCCCCCGTTTGTAGGAAGGTGGTGGCATGTTTCATTCACTTT
TAAGAAAGTTGTGTAGTTTGCATCACTCCACCTTTCTT----CCGTGCACTGGAAATTTCCATCATGTGCGGAAAGGGTG
TTGGTTGGTTGGTTCAGCGCATTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-------S---------------------------
----------S---------S---------------------------------------SS-S--SSS-----------
---------------------------------------------------------------------S----S-----
---------------------------------------------------------S----------------S-S---
------------------------------SS-------------------------------S----------------
-----------------S---S-----------------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---------S-------------------------------------------------------------S--------
-SS--------------------S-S--------------------------------------S--------S----SS
SSSSS------------S------------------------------------------S----SS-------------
----------S-------------SSSSSSSSSSSS-----------S-S---S--------------------------
-S--SSSS-----------------------SSS--------------------SS-SSSS--SSS-S--SS-SSSSS-S
S-S--SSS-----------S---SS---S-----------------------S--S-----------S-----------S
-----SSSSS--------------------------------S---S---------------------S-----------
---------S-------------------------------------------------S----S-S-SSSSSSS-S-S-
---------------------S----------S-----------------------------------------------
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---------------------------------------------------------------S----------------
-S-----------------S------------------------------------------S-SSS-------------
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-------------------------------------------------------------S------------------
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---------------------------S----------------------------------------------------
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-------------------------------SSS---------------------------SSS----S-----------
-----------------------S--------------------------------------------------------
-----------------------------------S--------------------------------------------
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-----------------------------------S---S----------------------------------------
-------------------------------------S------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------S-----------------------------------------
--S-------------------------S------------------S------------S-------------------
-----------------S--------S------------------S----SS-S------------S-----S-------
-----S-------------S----------------------------------S------------S------------
-----S---S----SSSSSSSSSSS----------S---SSS-----S--S------S-----SS-----SSSS-SSSS-
-S-S----------S-S-------------------S---S--------------S------------------S---S-
SSS-SSS-S-SSSSS-------------S--------------------S------------S---S-----SS-SSSSS
--------------------S-----------SS---S----SSS-SSSSS-------S---------------------
---------------S----S--S--S---S--SSSSSS---------------S--------------------SSS--
----------S---------------------------------------------------------------------
-------------------------------------------------S------------S---S------S------
---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------------
-----------S--SS--------------S-S---S------S--S--S--SS----S--------SS-S------S--
SSSSSS------S---S-SS--S--------------------------S-------S-----S---S--S---------
--------SS------------------S------S-----SS-------SS--------SSSSS---------------
-----------S--------S------------------------------------S--S-------------------
----S-------------SS--------S----S-SSS----S-------------------------------------
----------------------------------S---SSSS-----------------------------------S--
S-----------------S-----
>forward_984
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----CTGTGGCCTGTAGAGTGCAA--------------------------------------------------------
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>reverse_4753
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--------------------------------GGGAGCTTGACCTTGGAGAC----------------------------
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