Multiple sequence alignment - TraesCS1D01G354800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G354800 chr1D 100.000 2339 0 0 281 2619 439732474 439734812 0.000000e+00 4320.0
1 TraesCS1D01G354800 chr1D 84.993 693 72 18 1105 1787 439726699 439727369 0.000000e+00 675.0
2 TraesCS1D01G354800 chr1D 83.359 655 79 17 998 1627 439671202 439671851 1.750000e-161 579.0
3 TraesCS1D01G354800 chr1D 91.536 319 23 2 282 596 174256676 174256994 1.110000e-118 436.0
4 TraesCS1D01G354800 chr1D 90.881 318 25 2 281 594 348295463 348295780 8.670000e-115 424.0
5 TraesCS1D01G354800 chr1D 96.154 52 1 1 702 753 439714850 439714900 1.670000e-12 84.2
6 TraesCS1D01G354800 chr1D 100.000 42 0 0 1 42 439732194 439732235 7.770000e-11 78.7
7 TraesCS1D01G354800 chr1A 92.074 1615 118 6 1007 2618 538783709 538782102 0.000000e+00 2265.0
8 TraesCS1D01G354800 chr1B 93.297 1283 64 10 633 1901 597068267 597069541 0.000000e+00 1873.0
9 TraesCS1D01G354800 chr1B 86.992 738 88 4 1886 2616 597069586 597070322 0.000000e+00 824.0
10 TraesCS1D01G354800 chr1B 84.425 687 103 4 1934 2619 487026279 487025596 0.000000e+00 673.0
11 TraesCS1D01G354800 chr1B 80.841 809 114 22 998 1769 596929151 596929955 4.820000e-167 597.0
12 TraesCS1D01G354800 chr1B 84.547 563 58 17 1105 1663 596999604 597000141 4.960000e-147 531.0
13 TraesCS1D01G354800 chr1B 80.826 678 115 9 1938 2608 565524301 565523632 3.860000e-143 518.0
14 TraesCS1D01G354800 chr1B 80.000 210 19 16 702 900 596945621 596945818 1.640000e-27 134.0
15 TraesCS1D01G354800 chr1B 100.000 30 0 0 1888 1917 597069555 597069584 3.640000e-04 56.5
16 TraesCS1D01G354800 chr5D 85.505 683 94 5 1938 2619 80358539 80359217 0.000000e+00 708.0
17 TraesCS1D01G354800 chr5D 85.423 686 95 4 1934 2619 544627120 544626440 0.000000e+00 708.0
18 TraesCS1D01G354800 chr6B 85.380 684 96 4 1938 2619 54871373 54872054 0.000000e+00 706.0
19 TraesCS1D01G354800 chr6B 90.062 322 27 3 281 598 719788621 719788941 1.880000e-111 412.0
20 TraesCS1D01G354800 chr5B 84.425 687 103 4 1934 2619 416856038 416856721 0.000000e+00 673.0
21 TraesCS1D01G354800 chr2B 83.153 647 109 0 1973 2619 100074414 100075060 2.240000e-165 592.0
22 TraesCS1D01G354800 chr4D 91.195 318 24 2 281 594 280654455 280654772 1.860000e-116 429.0
23 TraesCS1D01G354800 chr3D 90.566 318 26 2 281 594 60620431 60620748 4.030000e-113 418.0
24 TraesCS1D01G354800 chr3D 90.566 318 26 2 281 594 143654722 143654405 4.030000e-113 418.0
25 TraesCS1D01G354800 chr3D 90.252 318 27 3 281 594 263508312 263508629 1.880000e-111 412.0
26 TraesCS1D01G354800 chr2A 90.596 319 25 3 282 596 16907805 16908122 4.030000e-113 418.0
27 TraesCS1D01G354800 chr2D 90.506 316 26 2 285 596 398975314 398974999 5.210000e-112 414.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G354800 chr1D 439732194 439734812 2618 False 2199.350000 4320 100.000000 1 2619 2 chr1D.!!$F6 2618
1 TraesCS1D01G354800 chr1D 439726699 439727369 670 False 675.000000 675 84.993000 1105 1787 1 chr1D.!!$F5 682
2 TraesCS1D01G354800 chr1D 439671202 439671851 649 False 579.000000 579 83.359000 998 1627 1 chr1D.!!$F3 629
3 TraesCS1D01G354800 chr1A 538782102 538783709 1607 True 2265.000000 2265 92.074000 1007 2618 1 chr1A.!!$R1 1611
4 TraesCS1D01G354800 chr1B 597068267 597070322 2055 False 917.833333 1873 93.429667 633 2616 3 chr1B.!!$F4 1983
5 TraesCS1D01G354800 chr1B 487025596 487026279 683 True 673.000000 673 84.425000 1934 2619 1 chr1B.!!$R1 685
6 TraesCS1D01G354800 chr1B 596929151 596929955 804 False 597.000000 597 80.841000 998 1769 1 chr1B.!!$F1 771
7 TraesCS1D01G354800 chr1B 596999604 597000141 537 False 531.000000 531 84.547000 1105 1663 1 chr1B.!!$F3 558
8 TraesCS1D01G354800 chr1B 565523632 565524301 669 True 518.000000 518 80.826000 1938 2608 1 chr1B.!!$R2 670
9 TraesCS1D01G354800 chr5D 80358539 80359217 678 False 708.000000 708 85.505000 1938 2619 1 chr5D.!!$F1 681
10 TraesCS1D01G354800 chr5D 544626440 544627120 680 True 708.000000 708 85.423000 1934 2619 1 chr5D.!!$R1 685
11 TraesCS1D01G354800 chr6B 54871373 54872054 681 False 706.000000 706 85.380000 1938 2619 1 chr6B.!!$F1 681
12 TraesCS1D01G354800 chr5B 416856038 416856721 683 False 673.000000 673 84.425000 1934 2619 1 chr5B.!!$F1 685
13 TraesCS1D01G354800 chr2B 100074414 100075060 646 False 592.000000 592 83.153000 1973 2619 1 chr2B.!!$F1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 430 0.101759 CACTACATGCATGCTTGGCC 59.898 55.0 30.33 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2320 2461 0.774276 TCATGGGTTGTTGGCCTGTA 59.226 50.0 3.32 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.636562 ACTGGAATAATACTAGACTCACGG 57.363 41.667 0.00 0.00 0.00 4.94
24 25 5.535406 ACTGGAATAATACTAGACTCACGGG 59.465 44.000 0.00 0.00 0.00 5.28
25 26 5.452255 TGGAATAATACTAGACTCACGGGT 58.548 41.667 0.00 0.00 0.00 5.28
26 27 5.895534 TGGAATAATACTAGACTCACGGGTT 59.104 40.000 0.00 0.00 0.00 4.11
27 28 7.062322 TGGAATAATACTAGACTCACGGGTTA 58.938 38.462 0.00 0.00 0.00 2.85
28 29 7.013655 TGGAATAATACTAGACTCACGGGTTAC 59.986 40.741 0.00 0.00 0.00 2.50
29 30 6.890979 ATAATACTAGACTCACGGGTTACC 57.109 41.667 0.00 0.00 0.00 2.85
30 31 2.895242 ACTAGACTCACGGGTTACCT 57.105 50.000 0.00 0.00 33.28 3.08
31 32 2.720915 ACTAGACTCACGGGTTACCTC 58.279 52.381 0.00 0.00 33.28 3.85
32 33 2.022934 CTAGACTCACGGGTTACCTCC 58.977 57.143 0.00 0.00 33.28 4.30
33 34 0.113776 AGACTCACGGGTTACCTCCA 59.886 55.000 0.00 0.00 33.28 3.86
34 35 0.971386 GACTCACGGGTTACCTCCAA 59.029 55.000 0.00 0.00 33.28 3.53
35 36 0.683412 ACTCACGGGTTACCTCCAAC 59.317 55.000 0.00 0.00 33.28 3.77
36 37 0.389426 CTCACGGGTTACCTCCAACG 60.389 60.000 0.00 0.00 33.28 4.10
37 38 1.375013 CACGGGTTACCTCCAACGG 60.375 63.158 0.00 0.00 33.28 4.44
38 39 1.533753 ACGGGTTACCTCCAACGGA 60.534 57.895 0.00 0.00 33.28 4.69
39 40 1.079612 CGGGTTACCTCCAACGGAC 60.080 63.158 0.00 0.00 33.28 4.79
40 41 1.297689 GGGTTACCTCCAACGGACC 59.702 63.158 0.00 0.00 0.00 4.46
41 42 1.196766 GGGTTACCTCCAACGGACCT 61.197 60.000 0.00 0.00 0.00 3.85
305 306 5.123936 ACTCCCTCATTTCGTTTTATAGGC 58.876 41.667 0.00 0.00 0.00 3.93
306 307 4.457466 TCCCTCATTTCGTTTTATAGGCC 58.543 43.478 0.00 0.00 0.00 5.19
307 308 4.165372 TCCCTCATTTCGTTTTATAGGCCT 59.835 41.667 11.78 11.78 0.00 5.19
308 309 4.887655 CCCTCATTTCGTTTTATAGGCCTT 59.112 41.667 12.58 0.81 0.00 4.35
309 310 6.059484 CCCTCATTTCGTTTTATAGGCCTTA 58.941 40.000 12.58 0.00 0.00 2.69
310 311 6.544564 CCCTCATTTCGTTTTATAGGCCTTAA 59.455 38.462 12.58 6.95 0.00 1.85
311 312 7.067737 CCCTCATTTCGTTTTATAGGCCTTAAA 59.932 37.037 12.58 12.91 0.00 1.52
312 313 8.630037 CCTCATTTCGTTTTATAGGCCTTAAAT 58.370 33.333 12.58 0.00 0.00 1.40
313 314 9.665264 CTCATTTCGTTTTATAGGCCTTAAATC 57.335 33.333 12.58 13.05 0.00 2.17
314 315 9.403583 TCATTTCGTTTTATAGGCCTTAAATCT 57.596 29.630 12.58 0.00 0.00 2.40
315 316 9.450807 CATTTCGTTTTATAGGCCTTAAATCTG 57.549 33.333 12.58 10.69 0.00 2.90
316 317 8.795842 TTTCGTTTTATAGGCCTTAAATCTGA 57.204 30.769 12.58 12.37 0.00 3.27
317 318 8.795842 TTCGTTTTATAGGCCTTAAATCTGAA 57.204 30.769 12.58 16.21 0.00 3.02
318 319 8.795842 TCGTTTTATAGGCCTTAAATCTGAAA 57.204 30.769 12.58 0.00 0.00 2.69
319 320 9.403583 TCGTTTTATAGGCCTTAAATCTGAAAT 57.596 29.630 12.58 0.00 0.00 2.17
320 321 9.665264 CGTTTTATAGGCCTTAAATCTGAAATC 57.335 33.333 12.58 0.00 0.00 2.17
325 326 8.860780 ATAGGCCTTAAATCTGAAATCTCATC 57.139 34.615 12.58 0.00 0.00 2.92
326 327 6.909076 AGGCCTTAAATCTGAAATCTCATCT 58.091 36.000 0.00 0.00 0.00 2.90
327 328 8.038862 AGGCCTTAAATCTGAAATCTCATCTA 57.961 34.615 0.00 0.00 0.00 1.98
328 329 7.936301 AGGCCTTAAATCTGAAATCTCATCTAC 59.064 37.037 0.00 0.00 0.00 2.59
329 330 7.174080 GGCCTTAAATCTGAAATCTCATCTACC 59.826 40.741 0.00 0.00 0.00 3.18
330 331 7.716998 GCCTTAAATCTGAAATCTCATCTACCA 59.283 37.037 0.00 0.00 0.00 3.25
331 332 9.618890 CCTTAAATCTGAAATCTCATCTACCAA 57.381 33.333 0.00 0.00 0.00 3.67
333 334 9.618890 TTAAATCTGAAATCTCATCTACCAAGG 57.381 33.333 0.00 0.00 0.00 3.61
334 335 5.028549 TCTGAAATCTCATCTACCAAGGC 57.971 43.478 0.00 0.00 0.00 4.35
335 336 4.471025 TCTGAAATCTCATCTACCAAGGCA 59.529 41.667 0.00 0.00 0.00 4.75
336 337 4.774124 TGAAATCTCATCTACCAAGGCAG 58.226 43.478 0.00 0.00 0.00 4.85
337 338 4.471025 TGAAATCTCATCTACCAAGGCAGA 59.529 41.667 0.00 0.00 0.00 4.26
338 339 5.131642 TGAAATCTCATCTACCAAGGCAGAT 59.868 40.000 0.00 0.00 31.58 2.90
339 340 4.620589 ATCTCATCTACCAAGGCAGATG 57.379 45.455 19.11 19.11 46.29 2.90
344 345 4.620589 ATCTACCAAGGCAGATGATGAG 57.379 45.455 0.99 0.00 30.30 2.90
345 346 3.378512 TCTACCAAGGCAGATGATGAGT 58.621 45.455 0.00 0.00 0.00 3.41
346 347 2.414994 ACCAAGGCAGATGATGAGTG 57.585 50.000 0.00 0.00 0.00 3.51
347 348 1.064906 ACCAAGGCAGATGATGAGTGG 60.065 52.381 0.00 0.00 33.85 4.00
348 349 1.211212 CCAAGGCAGATGATGAGTGGA 59.789 52.381 0.00 0.00 30.86 4.02
349 350 2.562635 CAAGGCAGATGATGAGTGGAG 58.437 52.381 0.00 0.00 0.00 3.86
350 351 1.129917 AGGCAGATGATGAGTGGAGG 58.870 55.000 0.00 0.00 0.00 4.30
351 352 1.126488 GGCAGATGATGAGTGGAGGA 58.874 55.000 0.00 0.00 0.00 3.71
352 353 1.487976 GGCAGATGATGAGTGGAGGAA 59.512 52.381 0.00 0.00 0.00 3.36
353 354 2.106166 GGCAGATGATGAGTGGAGGAAT 59.894 50.000 0.00 0.00 0.00 3.01
354 355 3.326006 GGCAGATGATGAGTGGAGGAATA 59.674 47.826 0.00 0.00 0.00 1.75
355 356 4.019501 GGCAGATGATGAGTGGAGGAATAT 60.020 45.833 0.00 0.00 0.00 1.28
356 357 5.188555 GGCAGATGATGAGTGGAGGAATATA 59.811 44.000 0.00 0.00 0.00 0.86
357 358 6.126825 GGCAGATGATGAGTGGAGGAATATAT 60.127 42.308 0.00 0.00 0.00 0.86
358 359 6.985645 GCAGATGATGAGTGGAGGAATATATC 59.014 42.308 0.00 0.00 0.00 1.63
359 360 7.147689 GCAGATGATGAGTGGAGGAATATATCT 60.148 40.741 0.00 0.00 0.00 1.98
360 361 9.418839 CAGATGATGAGTGGAGGAATATATCTA 57.581 37.037 0.00 0.00 0.00 1.98
361 362 9.420118 AGATGATGAGTGGAGGAATATATCTAC 57.580 37.037 0.00 0.00 0.00 2.59
362 363 9.420118 GATGATGAGTGGAGGAATATATCTACT 57.580 37.037 2.43 2.43 39.63 2.57
363 364 9.781425 ATGATGAGTGGAGGAATATATCTACTT 57.219 33.333 3.93 0.00 37.38 2.24
364 365 9.607333 TGATGAGTGGAGGAATATATCTACTTT 57.393 33.333 3.93 0.00 37.38 2.66
367 368 9.877222 TGAGTGGAGGAATATATCTACTTTACA 57.123 33.333 3.93 0.00 37.38 2.41
420 421 8.518430 AATGTGGATTAATTACACTACATGCA 57.482 30.769 18.89 0.00 35.37 3.96
421 422 8.696043 ATGTGGATTAATTACACTACATGCAT 57.304 30.769 18.89 0.00 34.29 3.96
422 423 7.929159 TGTGGATTAATTACACTACATGCATG 58.071 34.615 25.09 25.09 36.16 4.06
423 424 6.857964 GTGGATTAATTACACTACATGCATGC 59.142 38.462 26.53 11.82 32.58 4.06
424 425 6.772233 TGGATTAATTACACTACATGCATGCT 59.228 34.615 26.53 15.56 0.00 3.79
425 426 7.285172 TGGATTAATTACACTACATGCATGCTT 59.715 33.333 26.53 10.16 0.00 3.91
426 427 7.592533 GGATTAATTACACTACATGCATGCTTG 59.407 37.037 26.53 26.93 0.00 4.01
427 428 4.906065 ATTACACTACATGCATGCTTGG 57.094 40.909 30.33 19.14 0.00 3.61
428 429 0.813184 ACACTACATGCATGCTTGGC 59.187 50.000 30.33 1.72 0.00 4.52
429 430 0.101759 CACTACATGCATGCTTGGCC 59.898 55.000 30.33 0.00 0.00 5.36
430 431 0.323633 ACTACATGCATGCTTGGCCA 60.324 50.000 30.33 17.41 0.00 5.36
431 432 0.101759 CTACATGCATGCTTGGCCAC 59.898 55.000 30.33 0.00 0.00 5.01
432 433 0.323633 TACATGCATGCTTGGCCACT 60.324 50.000 30.33 15.91 0.00 4.00
433 434 0.323633 ACATGCATGCTTGGCCACTA 60.324 50.000 30.33 4.86 0.00 2.74
434 435 0.384309 CATGCATGCTTGGCCACTAG 59.616 55.000 22.49 1.27 0.00 2.57
435 436 0.256752 ATGCATGCTTGGCCACTAGA 59.743 50.000 20.33 0.00 0.00 2.43
436 437 0.256752 TGCATGCTTGGCCACTAGAT 59.743 50.000 20.33 0.00 0.00 1.98
437 438 0.666913 GCATGCTTGGCCACTAGATG 59.333 55.000 3.88 6.90 0.00 2.90
438 439 1.748244 GCATGCTTGGCCACTAGATGA 60.748 52.381 3.88 0.00 0.00 2.92
439 440 2.219458 CATGCTTGGCCACTAGATGAG 58.781 52.381 3.88 0.00 0.00 2.90
440 441 1.279496 TGCTTGGCCACTAGATGAGT 58.721 50.000 3.88 0.00 39.82 3.41
441 442 2.466846 TGCTTGGCCACTAGATGAGTA 58.533 47.619 3.88 0.00 35.64 2.59
442 443 3.041211 TGCTTGGCCACTAGATGAGTAT 58.959 45.455 3.88 0.00 35.64 2.12
443 444 3.181462 TGCTTGGCCACTAGATGAGTATG 60.181 47.826 3.88 0.00 35.64 2.39
444 445 3.070159 GCTTGGCCACTAGATGAGTATGA 59.930 47.826 3.88 0.00 35.64 2.15
445 446 4.443457 GCTTGGCCACTAGATGAGTATGAA 60.443 45.833 3.88 0.00 35.64 2.57
446 447 4.672587 TGGCCACTAGATGAGTATGAAC 57.327 45.455 0.00 0.00 35.64 3.18
447 448 4.030216 TGGCCACTAGATGAGTATGAACA 58.970 43.478 0.00 0.00 35.64 3.18
448 449 4.655649 TGGCCACTAGATGAGTATGAACAT 59.344 41.667 0.00 0.00 35.64 2.71
449 450 5.130975 TGGCCACTAGATGAGTATGAACATT 59.869 40.000 0.00 0.00 35.64 2.71
450 451 5.468072 GGCCACTAGATGAGTATGAACATTG 59.532 44.000 0.00 0.00 35.64 2.82
451 452 5.049818 GCCACTAGATGAGTATGAACATTGC 60.050 44.000 0.00 0.00 35.64 3.56
452 453 6.051074 CCACTAGATGAGTATGAACATTGCA 58.949 40.000 0.00 0.00 35.64 4.08
453 454 6.709397 CCACTAGATGAGTATGAACATTGCAT 59.291 38.462 0.00 0.00 35.64 3.96
454 455 7.307811 CCACTAGATGAGTATGAACATTGCATG 60.308 40.741 0.00 0.00 35.64 4.06
455 456 5.434352 AGATGAGTATGAACATTGCATGC 57.566 39.130 11.82 11.82 0.00 4.06
456 457 4.885325 AGATGAGTATGAACATTGCATGCA 59.115 37.500 18.46 18.46 31.82 3.96
457 458 5.535030 AGATGAGTATGAACATTGCATGCAT 59.465 36.000 23.37 6.15 31.82 3.96
458 459 5.585820 TGAGTATGAACATTGCATGCATT 57.414 34.783 23.37 15.81 31.82 3.56
459 460 5.344884 TGAGTATGAACATTGCATGCATTG 58.655 37.500 31.08 31.08 31.82 2.82
460 461 5.125739 TGAGTATGAACATTGCATGCATTGA 59.874 36.000 36.46 21.68 31.82 2.57
461 462 6.156748 AGTATGAACATTGCATGCATTGAT 57.843 33.333 36.46 29.10 31.82 2.57
462 463 5.983118 AGTATGAACATTGCATGCATTGATG 59.017 36.000 36.46 29.98 31.82 3.07
463 464 4.457834 TGAACATTGCATGCATTGATGA 57.542 36.364 36.46 23.24 33.21 2.92
464 465 4.429108 TGAACATTGCATGCATTGATGAG 58.571 39.130 36.46 18.40 33.21 2.90
465 466 4.081917 TGAACATTGCATGCATTGATGAGT 60.082 37.500 36.46 22.84 33.21 3.41
466 467 4.465632 ACATTGCATGCATTGATGAGTT 57.534 36.364 36.46 18.40 33.21 3.01
467 468 4.827692 ACATTGCATGCATTGATGAGTTT 58.172 34.783 36.46 17.81 33.21 2.66
468 469 5.242434 ACATTGCATGCATTGATGAGTTTT 58.758 33.333 36.46 17.22 33.21 2.43
469 470 5.703592 ACATTGCATGCATTGATGAGTTTTT 59.296 32.000 36.46 16.63 33.21 1.94
499 500 4.950434 ATTGCATGCAAAGGTTTAATGC 57.050 36.364 34.84 12.27 39.55 3.56
500 501 2.335752 TGCATGCAAAGGTTTAATGCG 58.664 42.857 20.30 0.00 42.91 4.73
501 502 1.060986 GCATGCAAAGGTTTAATGCGC 59.939 47.619 14.21 0.00 42.91 6.09
502 503 1.660104 CATGCAAAGGTTTAATGCGCC 59.340 47.619 4.18 0.00 42.91 6.53
503 504 0.965439 TGCAAAGGTTTAATGCGCCT 59.035 45.000 4.18 0.00 42.91 5.52
504 505 1.342819 TGCAAAGGTTTAATGCGCCTT 59.657 42.857 4.18 3.40 43.75 4.35
505 506 1.726248 GCAAAGGTTTAATGCGCCTTG 59.274 47.619 4.18 0.00 41.31 3.61
506 507 2.609244 GCAAAGGTTTAATGCGCCTTGA 60.609 45.455 4.18 0.00 41.31 3.02
507 508 3.648009 CAAAGGTTTAATGCGCCTTGAA 58.352 40.909 4.18 0.83 41.31 2.69
508 509 4.054671 CAAAGGTTTAATGCGCCTTGAAA 58.945 39.130 4.18 0.00 41.31 2.69
509 510 4.535526 AAGGTTTAATGCGCCTTGAAAT 57.464 36.364 4.18 0.00 40.71 2.17
510 511 4.110036 AGGTTTAATGCGCCTTGAAATC 57.890 40.909 4.18 0.00 0.00 2.17
511 512 3.763897 AGGTTTAATGCGCCTTGAAATCT 59.236 39.130 4.18 0.66 0.00 2.40
512 513 4.105486 GGTTTAATGCGCCTTGAAATCTC 58.895 43.478 4.18 0.00 0.00 2.75
513 514 4.380444 GGTTTAATGCGCCTTGAAATCTCA 60.380 41.667 4.18 0.00 0.00 3.27
514 515 5.160641 GTTTAATGCGCCTTGAAATCTCAA 58.839 37.500 4.18 0.00 39.30 3.02
515 516 5.581126 TTAATGCGCCTTGAAATCTCAAT 57.419 34.783 4.18 0.00 40.78 2.57
516 517 6.691754 TTAATGCGCCTTGAAATCTCAATA 57.308 33.333 4.18 0.00 40.78 1.90
517 518 4.825546 ATGCGCCTTGAAATCTCAATAG 57.174 40.909 4.18 0.00 40.78 1.73
518 519 2.945008 TGCGCCTTGAAATCTCAATAGG 59.055 45.455 4.18 0.00 40.78 2.57
519 520 3.206150 GCGCCTTGAAATCTCAATAGGA 58.794 45.455 0.00 0.00 40.78 2.94
520 521 3.249559 GCGCCTTGAAATCTCAATAGGAG 59.750 47.826 0.00 0.00 40.78 3.69
533 534 3.837146 TCAATAGGAGATGGAGATGAGCC 59.163 47.826 0.00 0.00 0.00 4.70
534 535 2.317371 TAGGAGATGGAGATGAGCCC 57.683 55.000 0.00 0.00 0.00 5.19
535 536 0.567182 AGGAGATGGAGATGAGCCCT 59.433 55.000 0.00 0.00 0.00 5.19
536 537 1.061502 AGGAGATGGAGATGAGCCCTT 60.062 52.381 0.00 0.00 0.00 3.95
537 538 1.773653 GGAGATGGAGATGAGCCCTTT 59.226 52.381 0.00 0.00 0.00 3.11
538 539 2.975489 GGAGATGGAGATGAGCCCTTTA 59.025 50.000 0.00 0.00 0.00 1.85
539 540 3.392616 GGAGATGGAGATGAGCCCTTTAA 59.607 47.826 0.00 0.00 0.00 1.52
540 541 4.141390 GGAGATGGAGATGAGCCCTTTAAA 60.141 45.833 0.00 0.00 0.00 1.52
541 542 5.457342 GGAGATGGAGATGAGCCCTTTAAAT 60.457 44.000 0.00 0.00 0.00 1.40
542 543 6.023334 AGATGGAGATGAGCCCTTTAAATT 57.977 37.500 0.00 0.00 0.00 1.82
543 544 5.832060 AGATGGAGATGAGCCCTTTAAATTG 59.168 40.000 0.00 0.00 0.00 2.32
544 545 4.280819 TGGAGATGAGCCCTTTAAATTGG 58.719 43.478 0.00 0.00 0.00 3.16
545 546 3.638627 GGAGATGAGCCCTTTAAATTGGG 59.361 47.826 7.96 7.96 46.00 4.12
546 547 4.536765 GAGATGAGCCCTTTAAATTGGGA 58.463 43.478 15.14 0.00 46.15 4.37
547 548 4.946646 AGATGAGCCCTTTAAATTGGGAA 58.053 39.130 15.14 2.16 46.15 3.97
548 549 5.341169 AGATGAGCCCTTTAAATTGGGAAA 58.659 37.500 15.14 1.86 46.15 3.13
549 550 5.784906 AGATGAGCCCTTTAAATTGGGAAAA 59.215 36.000 15.14 1.56 46.15 2.29
550 551 5.222079 TGAGCCCTTTAAATTGGGAAAAC 57.778 39.130 15.14 4.88 46.15 2.43
551 552 4.242475 GAGCCCTTTAAATTGGGAAAACG 58.758 43.478 15.14 0.00 46.15 3.60
552 553 3.898741 AGCCCTTTAAATTGGGAAAACGA 59.101 39.130 15.14 0.00 46.15 3.85
553 554 4.345547 AGCCCTTTAAATTGGGAAAACGAA 59.654 37.500 15.14 0.00 46.15 3.85
554 555 5.057819 GCCCTTTAAATTGGGAAAACGAAA 58.942 37.500 15.14 0.00 46.15 3.46
555 556 5.527951 GCCCTTTAAATTGGGAAAACGAAAA 59.472 36.000 15.14 0.00 46.15 2.29
556 557 6.038382 GCCCTTTAAATTGGGAAAACGAAAAA 59.962 34.615 15.14 0.00 46.15 1.94
557 558 7.255312 GCCCTTTAAATTGGGAAAACGAAAAAT 60.255 33.333 15.14 0.00 46.15 1.82
558 559 8.625651 CCCTTTAAATTGGGAAAACGAAAAATT 58.374 29.630 6.68 0.00 46.15 1.82
568 569 8.766151 TGGGAAAACGAAAAATTTAACATAAGC 58.234 29.630 0.00 0.00 0.00 3.09
569 570 8.984764 GGGAAAACGAAAAATTTAACATAAGCT 58.015 29.630 0.00 0.00 0.00 3.74
586 587 8.570068 ACATAAGCTTTATAAACCGAAAAGGA 57.430 30.769 3.20 0.00 45.00 3.36
587 588 8.674607 ACATAAGCTTTATAAACCGAAAAGGAG 58.325 33.333 3.20 0.00 45.00 3.69
588 589 6.510879 AAGCTTTATAAACCGAAAAGGAGG 57.489 37.500 0.00 0.00 45.00 4.30
589 590 5.812286 AGCTTTATAAACCGAAAAGGAGGA 58.188 37.500 0.00 0.00 45.00 3.71
590 591 6.243148 AGCTTTATAAACCGAAAAGGAGGAA 58.757 36.000 0.00 0.00 45.00 3.36
591 592 6.374613 AGCTTTATAAACCGAAAAGGAGGAAG 59.625 38.462 0.00 0.00 45.00 3.46
592 593 6.150641 GCTTTATAAACCGAAAAGGAGGAAGT 59.849 38.462 0.00 0.00 45.00 3.01
593 594 7.335171 GCTTTATAAACCGAAAAGGAGGAAGTA 59.665 37.037 0.00 0.00 45.00 2.24
594 595 8.552083 TTTATAAACCGAAAAGGAGGAAGTAC 57.448 34.615 0.00 0.00 45.00 2.73
595 596 4.701651 AAACCGAAAAGGAGGAAGTACT 57.298 40.909 0.00 0.00 45.00 2.73
596 597 4.701651 AACCGAAAAGGAGGAAGTACTT 57.298 40.909 8.13 8.13 45.00 2.24
597 598 5.813513 AACCGAAAAGGAGGAAGTACTTA 57.186 39.130 8.42 0.00 45.00 2.24
598 599 5.813513 ACCGAAAAGGAGGAAGTACTTAA 57.186 39.130 8.42 0.00 45.00 1.85
599 600 6.370186 ACCGAAAAGGAGGAAGTACTTAAT 57.630 37.500 8.42 0.00 45.00 1.40
600 601 6.404708 ACCGAAAAGGAGGAAGTACTTAATC 58.595 40.000 8.42 9.35 45.00 1.75
601 602 6.013984 ACCGAAAAGGAGGAAGTACTTAATCA 60.014 38.462 8.42 0.00 45.00 2.57
602 603 6.535508 CCGAAAAGGAGGAAGTACTTAATCAG 59.464 42.308 8.42 0.00 45.00 2.90
603 604 6.036191 CGAAAAGGAGGAAGTACTTAATCAGC 59.964 42.308 8.42 0.00 0.00 4.26
604 605 5.360649 AAGGAGGAAGTACTTAATCAGCC 57.639 43.478 8.42 4.35 0.00 4.85
605 606 3.712218 AGGAGGAAGTACTTAATCAGCCC 59.288 47.826 8.42 3.59 0.00 5.19
606 607 3.181453 GGAGGAAGTACTTAATCAGCCCC 60.181 52.174 8.42 2.82 0.00 5.80
607 608 2.434702 AGGAAGTACTTAATCAGCCCCG 59.565 50.000 8.42 0.00 0.00 5.73
608 609 2.169978 GGAAGTACTTAATCAGCCCCGT 59.830 50.000 8.42 0.00 0.00 5.28
609 610 3.385755 GGAAGTACTTAATCAGCCCCGTA 59.614 47.826 8.42 0.00 0.00 4.02
610 611 4.141869 GGAAGTACTTAATCAGCCCCGTAA 60.142 45.833 8.42 0.00 0.00 3.18
611 612 5.422145 GAAGTACTTAATCAGCCCCGTAAA 58.578 41.667 8.42 0.00 0.00 2.01
612 613 4.763073 AGTACTTAATCAGCCCCGTAAAC 58.237 43.478 0.00 0.00 0.00 2.01
613 614 3.994931 ACTTAATCAGCCCCGTAAACT 57.005 42.857 0.00 0.00 0.00 2.66
614 615 3.870274 ACTTAATCAGCCCCGTAAACTC 58.130 45.455 0.00 0.00 0.00 3.01
615 616 2.994186 TAATCAGCCCCGTAAACTCC 57.006 50.000 0.00 0.00 0.00 3.85
616 617 0.255033 AATCAGCCCCGTAAACTCCC 59.745 55.000 0.00 0.00 0.00 4.30
617 618 1.632965 ATCAGCCCCGTAAACTCCCC 61.633 60.000 0.00 0.00 0.00 4.81
618 619 3.396570 AGCCCCGTAAACTCCCCG 61.397 66.667 0.00 0.00 0.00 5.73
619 620 3.709633 GCCCCGTAAACTCCCCGT 61.710 66.667 0.00 0.00 0.00 5.28
620 621 2.266689 CCCCGTAAACTCCCCGTG 59.733 66.667 0.00 0.00 0.00 4.94
621 622 2.285024 CCCCGTAAACTCCCCGTGA 61.285 63.158 0.00 0.00 0.00 4.35
622 623 1.672898 CCCGTAAACTCCCCGTGAA 59.327 57.895 0.00 0.00 0.00 3.18
623 624 0.671472 CCCGTAAACTCCCCGTGAAC 60.671 60.000 0.00 0.00 0.00 3.18
624 625 0.671472 CCGTAAACTCCCCGTGAACC 60.671 60.000 0.00 0.00 0.00 3.62
625 626 0.671472 CGTAAACTCCCCGTGAACCC 60.671 60.000 0.00 0.00 0.00 4.11
626 627 0.321919 GTAAACTCCCCGTGAACCCC 60.322 60.000 0.00 0.00 0.00 4.95
627 628 1.491274 TAAACTCCCCGTGAACCCCC 61.491 60.000 0.00 0.00 0.00 5.40
628 629 3.805151 AACTCCCCGTGAACCCCCT 62.805 63.158 0.00 0.00 0.00 4.79
629 630 3.717294 CTCCCCGTGAACCCCCTG 61.717 72.222 0.00 0.00 0.00 4.45
630 631 4.585216 TCCCCGTGAACCCCCTGT 62.585 66.667 0.00 0.00 0.00 4.00
631 632 4.344865 CCCCGTGAACCCCCTGTG 62.345 72.222 0.00 0.00 0.00 3.66
651 656 3.123116 GTGAGACGCTTGCTTAAGTTACC 59.877 47.826 4.02 0.00 0.00 2.85
680 685 3.648339 ATGACAGCGCTTTGAAATTGT 57.352 38.095 7.50 0.00 0.00 2.71
695 700 5.234752 TGAAATTGTAAGTAGCTCGCTTGA 58.765 37.500 12.18 1.62 0.00 3.02
711 716 2.095364 GCTTGAGATGCACTCCAACAAG 60.095 50.000 11.99 13.92 44.34 3.16
754 759 1.429021 CATGCATGTTTCCCCGACG 59.571 57.895 18.91 0.00 0.00 5.12
786 791 3.908103 ACCTCGTATAACTTGGCCCATAT 59.092 43.478 0.00 0.00 0.00 1.78
801 806 5.886474 TGGCCCATATAATAAACAACAACGA 59.114 36.000 0.00 0.00 0.00 3.85
805 810 6.258287 CCCATATAATAAACAACAACGACCGA 59.742 38.462 0.00 0.00 0.00 4.69
806 811 7.041644 CCCATATAATAAACAACAACGACCGAT 60.042 37.037 0.00 0.00 0.00 4.18
807 812 8.339714 CCATATAATAAACAACAACGACCGATT 58.660 33.333 0.00 0.00 0.00 3.34
818 823 2.224606 ACGACCGATTATCTCCGCTAA 58.775 47.619 0.00 0.00 0.00 3.09
828 833 7.169982 CCGATTATCTCCGCTAATTAATCCATC 59.830 40.741 0.00 0.00 0.00 3.51
834 839 3.060363 CCGCTAATTAATCCATCGCGTAC 59.940 47.826 5.77 0.00 37.67 3.67
839 844 3.786516 TTAATCCATCGCGTACACAGA 57.213 42.857 5.77 0.00 0.00 3.41
840 845 2.665649 AATCCATCGCGTACACAGAA 57.334 45.000 5.77 0.00 0.00 3.02
844 849 1.424403 CATCGCGTACACAGAAACCA 58.576 50.000 5.77 0.00 0.00 3.67
925 930 6.840780 ATAAATTTGCAACCTCTAGCTTGT 57.159 33.333 0.00 0.00 0.00 3.16
947 961 7.096884 TGTTGTCTATCATTCGTAGCTAGTT 57.903 36.000 0.00 0.00 0.00 2.24
954 968 9.503399 TCTATCATTCGTAGCTAGTTGATCTTA 57.497 33.333 0.00 0.00 0.00 2.10
987 1002 8.082059 GGAACCTTTTCTAGCTAGCTAGCAGA 62.082 46.154 39.50 33.42 44.10 4.26
1176 1191 0.458889 GGTACATCGGCTACAACGCA 60.459 55.000 0.00 0.00 0.00 5.24
1245 1264 2.284855 GCATTCTTTAACTACGTCCGCG 60.285 50.000 0.00 0.00 44.93 6.46
1366 1412 1.740296 GCGGCGGCTGAAGAAGTTA 60.740 57.895 14.15 0.00 35.83 2.24
1463 1509 1.136984 GTGTACGTGGAGAGCTCGG 59.863 63.158 8.37 0.00 0.00 4.63
1465 1511 3.138798 TACGTGGAGAGCTCGGCC 61.139 66.667 18.43 18.43 0.00 6.13
1468 1514 3.844090 GTGGAGAGCTCGGCCTCC 61.844 72.222 23.41 18.13 42.32 4.30
1531 1577 0.750249 TGCCACTCAAGTTCGACTCA 59.250 50.000 0.00 0.00 0.00 3.41
1580 1626 1.880894 CTCTACTCCGTCGGCAACA 59.119 57.895 6.34 0.00 0.00 3.33
1709 1775 4.160329 CTGTTGGAGTAGCTGGGGATATA 58.840 47.826 0.00 0.00 0.00 0.86
1710 1776 4.763355 TGTTGGAGTAGCTGGGGATATAT 58.237 43.478 0.00 0.00 0.00 0.86
1742 1811 7.200455 GGTGCTGTACTGTTGATTTAAGTTTT 58.800 34.615 1.46 0.00 0.00 2.43
1764 1833 5.392767 TTTCTGTTGTTGCAGTGGTTTTA 57.607 34.783 0.00 0.00 37.70 1.52
1806 1875 4.060038 ACCGCATGATCGAAATAACTCT 57.940 40.909 0.00 0.00 0.00 3.24
1807 1876 4.442706 ACCGCATGATCGAAATAACTCTT 58.557 39.130 0.00 0.00 0.00 2.85
1808 1877 5.597806 ACCGCATGATCGAAATAACTCTTA 58.402 37.500 0.00 0.00 0.00 2.10
1809 1878 6.046593 ACCGCATGATCGAAATAACTCTTAA 58.953 36.000 0.00 0.00 0.00 1.85
1810 1879 6.706270 ACCGCATGATCGAAATAACTCTTAAT 59.294 34.615 0.00 0.00 0.00 1.40
1832 1903 6.686484 ATATGATTAGGGCAGTGTATGTCA 57.314 37.500 0.00 0.00 34.12 3.58
1857 1928 5.084818 TCATGTGATGACTAACCGATGTT 57.915 39.130 0.00 0.00 34.85 2.71
1917 2015 6.015504 CGTAAGTTCATTCAAGTCGGATTTG 58.984 40.000 6.89 6.89 0.00 2.32
1919 2017 6.391227 AAGTTCATTCAAGTCGGATTTGTT 57.609 33.333 12.20 0.60 0.00 2.83
1936 2067 7.439655 CGGATTTGTTGTTTTTCCCAAGATTTA 59.560 33.333 0.00 0.00 0.00 1.40
1958 2089 7.944729 TTATTTAGAGAAAAGGCATGAAGCT 57.055 32.000 0.00 0.00 44.79 3.74
1965 2096 1.446907 AAGGCATGAAGCTCGACTTG 58.553 50.000 0.00 0.00 44.79 3.16
1988 2125 7.002250 TGAAATTAATGAAGCCATCAACCAA 57.998 32.000 0.00 0.00 42.54 3.67
2009 2146 5.875359 CCAACTAGGATACAAAGGAACTGAC 59.125 44.000 0.00 0.00 38.40 3.51
2030 2167 4.020543 ACTACAAAGGCCAAAACTTGACA 58.979 39.130 5.01 0.00 0.00 3.58
2133 2271 0.240945 GAAACCACGGTCAAGCCATG 59.759 55.000 0.00 0.00 36.97 3.66
2174 2313 2.284478 AGCAGAGCAGAGGCCAGA 60.284 61.111 5.01 0.00 42.56 3.86
2233 2372 0.745845 CATGGAGAGAAACCCGGCAG 60.746 60.000 0.00 0.00 0.00 4.85
2289 2430 1.874345 AACGCAGTCTCCCCTACGTG 61.874 60.000 0.00 0.00 45.00 4.49
2295 2436 1.685765 TCTCCCCTACGTGCATGCT 60.686 57.895 20.33 0.40 0.00 3.79
2313 2454 0.532573 CTGTGCCACTACACGAGGAT 59.467 55.000 0.00 0.00 43.74 3.24
2320 2461 4.587262 TGCCACTACACGAGGATATTGTAT 59.413 41.667 0.00 0.00 0.00 2.29
2424 2565 1.202313 GCCTAGAGAGCAACGTACCAG 60.202 57.143 0.00 0.00 0.00 4.00
2443 2584 2.755469 GCCGCCACCATTCACCAT 60.755 61.111 0.00 0.00 0.00 3.55
2444 2585 2.350458 GCCGCCACCATTCACCATT 61.350 57.895 0.00 0.00 0.00 3.16
2464 2605 1.303317 ACCACAACCGCAATCTCCC 60.303 57.895 0.00 0.00 0.00 4.30
2506 2647 1.147600 AAGGAGGAACACGCCGTTT 59.852 52.632 0.00 0.00 44.78 3.60
2573 2719 1.305381 CGTGAGGGAGGAAGAGGGT 60.305 63.158 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.535406 CCCGTGAGTCTAGTATTATTCCAGT 59.465 44.000 0.00 0.00 0.00 4.00
3 4 6.402456 AACCCGTGAGTCTAGTATTATTCC 57.598 41.667 0.00 0.00 0.00 3.01
4 5 7.230309 AGGTAACCCGTGAGTCTAGTATTATTC 59.770 40.741 0.00 0.00 35.12 1.75
5 6 7.065504 AGGTAACCCGTGAGTCTAGTATTATT 58.934 38.462 0.00 0.00 35.12 1.40
7 8 6.006275 AGGTAACCCGTGAGTCTAGTATTA 57.994 41.667 0.00 0.00 35.12 0.98
8 9 4.864726 AGGTAACCCGTGAGTCTAGTATT 58.135 43.478 0.00 0.00 35.12 1.89
9 10 4.459330 GAGGTAACCCGTGAGTCTAGTAT 58.541 47.826 0.00 0.00 35.12 2.12
10 11 3.370953 GGAGGTAACCCGTGAGTCTAGTA 60.371 52.174 0.00 0.00 35.12 1.82
11 12 2.620108 GGAGGTAACCCGTGAGTCTAGT 60.620 54.545 0.00 0.00 35.12 2.57
12 13 2.022934 GGAGGTAACCCGTGAGTCTAG 58.977 57.143 0.00 0.00 35.12 2.43
13 14 1.355381 TGGAGGTAACCCGTGAGTCTA 59.645 52.381 0.00 0.00 35.12 2.59
14 15 0.113776 TGGAGGTAACCCGTGAGTCT 59.886 55.000 0.00 0.00 35.12 3.24
15 16 0.971386 TTGGAGGTAACCCGTGAGTC 59.029 55.000 0.00 0.00 35.12 3.36
16 17 0.683412 GTTGGAGGTAACCCGTGAGT 59.317 55.000 0.00 0.00 35.12 3.41
17 18 0.389426 CGTTGGAGGTAACCCGTGAG 60.389 60.000 0.00 0.00 35.12 3.51
18 19 1.667151 CGTTGGAGGTAACCCGTGA 59.333 57.895 0.00 0.00 35.12 4.35
19 20 1.375013 CCGTTGGAGGTAACCCGTG 60.375 63.158 0.00 0.00 35.12 4.94
20 21 1.533753 TCCGTTGGAGGTAACCCGT 60.534 57.895 0.00 0.00 35.12 5.28
21 22 1.079612 GTCCGTTGGAGGTAACCCG 60.080 63.158 0.00 0.00 35.12 5.28
22 23 1.196766 AGGTCCGTTGGAGGTAACCC 61.197 60.000 0.00 0.00 30.68 4.11
23 24 2.369654 AGGTCCGTTGGAGGTAACC 58.630 57.895 0.00 0.00 29.39 2.85
280 281 6.935208 GCCTATAAAACGAAATGAGGGAGTAT 59.065 38.462 0.00 0.00 0.00 2.12
281 282 6.285990 GCCTATAAAACGAAATGAGGGAGTA 58.714 40.000 0.00 0.00 0.00 2.59
282 283 5.123936 GCCTATAAAACGAAATGAGGGAGT 58.876 41.667 0.00 0.00 0.00 3.85
283 284 4.515567 GGCCTATAAAACGAAATGAGGGAG 59.484 45.833 0.00 0.00 0.00 4.30
284 285 4.165372 AGGCCTATAAAACGAAATGAGGGA 59.835 41.667 1.29 0.00 0.00 4.20
285 286 4.461198 AGGCCTATAAAACGAAATGAGGG 58.539 43.478 1.29 0.00 0.00 4.30
286 287 7.562454 TTAAGGCCTATAAAACGAAATGAGG 57.438 36.000 5.16 0.00 0.00 3.86
287 288 9.665264 GATTTAAGGCCTATAAAACGAAATGAG 57.335 33.333 5.16 0.00 0.00 2.90
288 289 9.403583 AGATTTAAGGCCTATAAAACGAAATGA 57.596 29.630 5.16 0.00 0.00 2.57
289 290 9.450807 CAGATTTAAGGCCTATAAAACGAAATG 57.549 33.333 5.16 3.66 0.00 2.32
290 291 9.403583 TCAGATTTAAGGCCTATAAAACGAAAT 57.596 29.630 5.16 2.29 0.00 2.17
291 292 8.795842 TCAGATTTAAGGCCTATAAAACGAAA 57.204 30.769 5.16 0.00 0.00 3.46
292 293 8.795842 TTCAGATTTAAGGCCTATAAAACGAA 57.204 30.769 5.16 14.65 0.00 3.85
293 294 8.795842 TTTCAGATTTAAGGCCTATAAAACGA 57.204 30.769 5.16 10.53 0.00 3.85
294 295 9.665264 GATTTCAGATTTAAGGCCTATAAAACG 57.335 33.333 5.16 8.74 0.00 3.60
299 300 9.950496 GATGAGATTTCAGATTTAAGGCCTATA 57.050 33.333 5.16 0.00 36.61 1.31
300 301 8.667737 AGATGAGATTTCAGATTTAAGGCCTAT 58.332 33.333 5.16 0.00 36.61 2.57
301 302 8.038862 AGATGAGATTTCAGATTTAAGGCCTA 57.961 34.615 5.16 0.00 36.61 3.93
302 303 6.909076 AGATGAGATTTCAGATTTAAGGCCT 58.091 36.000 0.00 0.00 36.61 5.19
303 304 7.174080 GGTAGATGAGATTTCAGATTTAAGGCC 59.826 40.741 0.00 0.00 36.61 5.19
304 305 7.716998 TGGTAGATGAGATTTCAGATTTAAGGC 59.283 37.037 0.00 0.00 36.61 4.35
305 306 9.618890 TTGGTAGATGAGATTTCAGATTTAAGG 57.381 33.333 0.00 0.00 36.61 2.69
307 308 9.618890 CCTTGGTAGATGAGATTTCAGATTTAA 57.381 33.333 0.00 0.00 36.61 1.52
308 309 7.716998 GCCTTGGTAGATGAGATTTCAGATTTA 59.283 37.037 0.00 0.00 36.61 1.40
309 310 6.545298 GCCTTGGTAGATGAGATTTCAGATTT 59.455 38.462 0.00 0.00 36.61 2.17
310 311 6.060788 GCCTTGGTAGATGAGATTTCAGATT 58.939 40.000 0.00 0.00 36.61 2.40
311 312 5.131642 TGCCTTGGTAGATGAGATTTCAGAT 59.868 40.000 0.00 0.00 36.61 2.90
312 313 4.471025 TGCCTTGGTAGATGAGATTTCAGA 59.529 41.667 0.00 0.00 36.61 3.27
313 314 4.774124 TGCCTTGGTAGATGAGATTTCAG 58.226 43.478 0.00 0.00 36.61 3.02
314 315 4.471025 TCTGCCTTGGTAGATGAGATTTCA 59.529 41.667 3.33 0.00 37.81 2.69
315 316 5.028549 TCTGCCTTGGTAGATGAGATTTC 57.971 43.478 3.33 0.00 0.00 2.17
316 317 5.643421 ATCTGCCTTGGTAGATGAGATTT 57.357 39.130 17.33 0.00 32.65 2.17
323 324 3.972638 ACTCATCATCTGCCTTGGTAGAT 59.027 43.478 13.31 13.31 34.09 1.98
324 325 3.133542 CACTCATCATCTGCCTTGGTAGA 59.866 47.826 9.75 9.75 0.00 2.59
325 326 3.464907 CACTCATCATCTGCCTTGGTAG 58.535 50.000 0.00 0.00 0.00 3.18
326 327 2.171237 CCACTCATCATCTGCCTTGGTA 59.829 50.000 0.00 0.00 0.00 3.25
327 328 1.064906 CCACTCATCATCTGCCTTGGT 60.065 52.381 0.00 0.00 0.00 3.67
328 329 1.211212 TCCACTCATCATCTGCCTTGG 59.789 52.381 0.00 0.00 0.00 3.61
329 330 2.562635 CTCCACTCATCATCTGCCTTG 58.437 52.381 0.00 0.00 0.00 3.61
330 331 1.489649 CCTCCACTCATCATCTGCCTT 59.510 52.381 0.00 0.00 0.00 4.35
331 332 1.129917 CCTCCACTCATCATCTGCCT 58.870 55.000 0.00 0.00 0.00 4.75
332 333 1.126488 TCCTCCACTCATCATCTGCC 58.874 55.000 0.00 0.00 0.00 4.85
333 334 2.996249 TTCCTCCACTCATCATCTGC 57.004 50.000 0.00 0.00 0.00 4.26
334 335 8.308851 AGATATATTCCTCCACTCATCATCTG 57.691 38.462 0.00 0.00 0.00 2.90
335 336 9.420118 GTAGATATATTCCTCCACTCATCATCT 57.580 37.037 0.00 0.00 0.00 2.90
336 337 9.420118 AGTAGATATATTCCTCCACTCATCATC 57.580 37.037 0.00 0.00 0.00 2.92
337 338 9.781425 AAGTAGATATATTCCTCCACTCATCAT 57.219 33.333 0.00 0.00 0.00 2.45
338 339 9.607333 AAAGTAGATATATTCCTCCACTCATCA 57.393 33.333 0.00 0.00 0.00 3.07
341 342 9.877222 TGTAAAGTAGATATATTCCTCCACTCA 57.123 33.333 0.00 0.00 0.00 3.41
394 395 9.620259 TGCATGTAGTGTAATTAATCCACATTA 57.380 29.630 16.28 9.70 0.00 1.90
395 396 8.518430 TGCATGTAGTGTAATTAATCCACATT 57.482 30.769 16.28 10.44 0.00 2.71
396 397 8.570488 CATGCATGTAGTGTAATTAATCCACAT 58.430 33.333 18.91 3.79 0.00 3.21
397 398 7.468494 GCATGCATGTAGTGTAATTAATCCACA 60.468 37.037 26.79 9.05 0.00 4.17
398 399 6.857964 GCATGCATGTAGTGTAATTAATCCAC 59.142 38.462 26.79 9.21 0.00 4.02
399 400 6.772233 AGCATGCATGTAGTGTAATTAATCCA 59.228 34.615 26.79 0.00 0.00 3.41
400 401 7.206981 AGCATGCATGTAGTGTAATTAATCC 57.793 36.000 26.79 5.24 0.00 3.01
401 402 7.592533 CCAAGCATGCATGTAGTGTAATTAATC 59.407 37.037 26.79 5.87 0.00 1.75
402 403 7.428020 CCAAGCATGCATGTAGTGTAATTAAT 58.572 34.615 26.79 0.00 0.00 1.40
403 404 6.680131 GCCAAGCATGCATGTAGTGTAATTAA 60.680 38.462 26.79 0.00 0.00 1.40
404 405 5.221028 GCCAAGCATGCATGTAGTGTAATTA 60.221 40.000 26.79 0.00 0.00 1.40
405 406 4.440525 GCCAAGCATGCATGTAGTGTAATT 60.441 41.667 26.79 7.44 0.00 1.40
406 407 3.067180 GCCAAGCATGCATGTAGTGTAAT 59.933 43.478 26.79 3.18 0.00 1.89
407 408 2.423185 GCCAAGCATGCATGTAGTGTAA 59.577 45.455 26.79 0.00 0.00 2.41
408 409 2.016318 GCCAAGCATGCATGTAGTGTA 58.984 47.619 26.79 0.00 0.00 2.90
409 410 0.813184 GCCAAGCATGCATGTAGTGT 59.187 50.000 26.79 6.26 0.00 3.55
410 411 0.101759 GGCCAAGCATGCATGTAGTG 59.898 55.000 26.79 20.25 0.00 2.74
411 412 0.323633 TGGCCAAGCATGCATGTAGT 60.324 50.000 26.79 10.24 0.00 2.73
412 413 0.101759 GTGGCCAAGCATGCATGTAG 59.898 55.000 26.79 16.40 0.00 2.74
413 414 0.323633 AGTGGCCAAGCATGCATGTA 60.324 50.000 26.79 4.09 0.00 2.29
414 415 0.323633 TAGTGGCCAAGCATGCATGT 60.324 50.000 26.79 11.76 0.00 3.21
415 416 0.384309 CTAGTGGCCAAGCATGCATG 59.616 55.000 22.70 22.70 0.00 4.06
416 417 0.256752 TCTAGTGGCCAAGCATGCAT 59.743 50.000 21.98 4.57 0.00 3.96
417 418 0.256752 ATCTAGTGGCCAAGCATGCA 59.743 50.000 21.98 0.00 0.00 3.96
418 419 0.666913 CATCTAGTGGCCAAGCATGC 59.333 55.000 7.24 10.51 0.00 4.06
419 420 2.219458 CTCATCTAGTGGCCAAGCATG 58.781 52.381 7.24 7.98 0.00 4.06
420 421 1.842562 ACTCATCTAGTGGCCAAGCAT 59.157 47.619 7.24 0.00 36.93 3.79
421 422 1.279496 ACTCATCTAGTGGCCAAGCA 58.721 50.000 7.24 0.00 36.93 3.91
422 423 3.070159 TCATACTCATCTAGTGGCCAAGC 59.930 47.826 7.24 0.00 39.39 4.01
423 424 4.944619 TCATACTCATCTAGTGGCCAAG 57.055 45.455 7.24 1.33 39.39 3.61
424 425 4.469586 TGTTCATACTCATCTAGTGGCCAA 59.530 41.667 7.24 0.00 39.39 4.52
425 426 4.030216 TGTTCATACTCATCTAGTGGCCA 58.970 43.478 0.00 0.00 39.39 5.36
426 427 4.672587 TGTTCATACTCATCTAGTGGCC 57.327 45.455 0.00 0.00 39.39 5.36
427 428 5.049818 GCAATGTTCATACTCATCTAGTGGC 60.050 44.000 0.00 0.00 39.39 5.01
428 429 6.051074 TGCAATGTTCATACTCATCTAGTGG 58.949 40.000 0.00 0.00 39.39 4.00
429 430 7.573627 CATGCAATGTTCATACTCATCTAGTG 58.426 38.462 0.00 0.00 40.20 2.74
430 431 7.725818 CATGCAATGTTCATACTCATCTAGT 57.274 36.000 0.00 0.00 40.20 2.57
473 474 8.610896 GCATTAAACCTTTGCATGCAATAATTA 58.389 29.630 32.27 23.22 37.75 1.40
474 475 7.474190 GCATTAAACCTTTGCATGCAATAATT 58.526 30.769 32.27 24.11 37.75 1.40
475 476 6.238157 CGCATTAAACCTTTGCATGCAATAAT 60.238 34.615 32.27 26.18 37.72 1.28
476 477 5.063186 CGCATTAAACCTTTGCATGCAATAA 59.937 36.000 32.27 25.27 37.72 1.40
477 478 4.565962 CGCATTAAACCTTTGCATGCAATA 59.434 37.500 32.27 18.80 37.72 1.90
478 479 3.371591 CGCATTAAACCTTTGCATGCAAT 59.628 39.130 32.27 19.85 37.72 3.56
479 480 2.735663 CGCATTAAACCTTTGCATGCAA 59.264 40.909 28.80 28.80 37.72 4.08
480 481 2.335752 CGCATTAAACCTTTGCATGCA 58.664 42.857 18.46 18.46 37.72 3.96
481 482 1.060986 GCGCATTAAACCTTTGCATGC 59.939 47.619 11.82 11.82 36.15 4.06
482 483 1.660104 GGCGCATTAAACCTTTGCATG 59.340 47.619 10.83 0.00 36.15 4.06
483 484 1.550072 AGGCGCATTAAACCTTTGCAT 59.450 42.857 10.83 0.00 36.15 3.96
484 485 0.965439 AGGCGCATTAAACCTTTGCA 59.035 45.000 10.83 0.00 36.15 4.08
485 486 1.726248 CAAGGCGCATTAAACCTTTGC 59.274 47.619 7.11 0.00 41.90 3.68
486 487 3.296322 TCAAGGCGCATTAAACCTTTG 57.704 42.857 7.11 0.00 41.90 2.77
487 488 4.329462 TTTCAAGGCGCATTAAACCTTT 57.671 36.364 7.11 0.00 41.90 3.11
488 489 4.220602 AGATTTCAAGGCGCATTAAACCTT 59.779 37.500 7.11 0.00 44.66 3.50
489 490 3.763897 AGATTTCAAGGCGCATTAAACCT 59.236 39.130 7.11 2.50 34.45 3.50
490 491 4.105486 GAGATTTCAAGGCGCATTAAACC 58.895 43.478 7.11 0.03 0.00 3.27
491 492 4.732784 TGAGATTTCAAGGCGCATTAAAC 58.267 39.130 7.11 0.00 0.00 2.01
492 493 5.384063 TTGAGATTTCAAGGCGCATTAAA 57.616 34.783 7.11 9.21 38.37 1.52
493 494 5.581126 ATTGAGATTTCAAGGCGCATTAA 57.419 34.783 7.11 0.00 45.89 1.40
494 495 5.239306 CCTATTGAGATTTCAAGGCGCATTA 59.761 40.000 7.11 0.00 45.89 1.90
495 496 4.037208 CCTATTGAGATTTCAAGGCGCATT 59.963 41.667 10.83 5.20 45.89 3.56
496 497 3.567164 CCTATTGAGATTTCAAGGCGCAT 59.433 43.478 10.83 0.00 45.89 4.73
497 498 2.945008 CCTATTGAGATTTCAAGGCGCA 59.055 45.455 10.83 0.00 45.89 6.09
498 499 3.206150 TCCTATTGAGATTTCAAGGCGC 58.794 45.455 0.00 0.00 45.89 6.53
499 500 4.697514 TCTCCTATTGAGATTTCAAGGCG 58.302 43.478 4.85 0.00 45.29 5.52
510 511 4.081531 GGCTCATCTCCATCTCCTATTGAG 60.082 50.000 0.00 0.00 42.90 3.02
511 512 3.837146 GGCTCATCTCCATCTCCTATTGA 59.163 47.826 0.00 0.00 0.00 2.57
512 513 3.055240 GGGCTCATCTCCATCTCCTATTG 60.055 52.174 0.00 0.00 0.00 1.90
513 514 3.180507 GGGCTCATCTCCATCTCCTATT 58.819 50.000 0.00 0.00 0.00 1.73
514 515 2.386462 AGGGCTCATCTCCATCTCCTAT 59.614 50.000 0.00 0.00 0.00 2.57
515 516 1.792026 AGGGCTCATCTCCATCTCCTA 59.208 52.381 0.00 0.00 0.00 2.94
516 517 0.567182 AGGGCTCATCTCCATCTCCT 59.433 55.000 0.00 0.00 0.00 3.69
517 518 1.433121 AAGGGCTCATCTCCATCTCC 58.567 55.000 0.00 0.00 0.00 3.71
518 519 4.696479 TTAAAGGGCTCATCTCCATCTC 57.304 45.455 0.00 0.00 0.00 2.75
519 520 5.659849 ATTTAAAGGGCTCATCTCCATCT 57.340 39.130 0.00 0.00 0.00 2.90
520 521 5.010415 CCAATTTAAAGGGCTCATCTCCATC 59.990 44.000 0.00 0.00 0.00 3.51
521 522 4.897670 CCAATTTAAAGGGCTCATCTCCAT 59.102 41.667 0.00 0.00 0.00 3.41
522 523 4.280819 CCAATTTAAAGGGCTCATCTCCA 58.719 43.478 0.00 0.00 0.00 3.86
523 524 3.638627 CCCAATTTAAAGGGCTCATCTCC 59.361 47.826 0.00 0.00 38.44 3.71
524 525 4.536765 TCCCAATTTAAAGGGCTCATCTC 58.463 43.478 7.52 0.00 45.07 2.75
525 526 4.608170 TCCCAATTTAAAGGGCTCATCT 57.392 40.909 7.52 0.00 45.07 2.90
526 527 5.675684 TTTCCCAATTTAAAGGGCTCATC 57.324 39.130 7.52 0.00 45.07 2.92
527 528 5.568624 CGTTTTCCCAATTTAAAGGGCTCAT 60.569 40.000 7.52 0.00 45.07 2.90
528 529 4.262249 CGTTTTCCCAATTTAAAGGGCTCA 60.262 41.667 7.52 0.00 45.07 4.26
529 530 4.021807 TCGTTTTCCCAATTTAAAGGGCTC 60.022 41.667 7.52 0.00 45.07 4.70
530 531 3.898741 TCGTTTTCCCAATTTAAAGGGCT 59.101 39.130 7.52 0.00 45.07 5.19
531 532 4.260139 TCGTTTTCCCAATTTAAAGGGC 57.740 40.909 7.52 0.00 45.07 5.19
532 533 7.555306 TTTTTCGTTTTCCCAATTTAAAGGG 57.445 32.000 6.23 6.23 46.90 3.95
542 543 8.766151 GCTTATGTTAAATTTTTCGTTTTCCCA 58.234 29.630 0.00 0.00 0.00 4.37
543 544 8.984764 AGCTTATGTTAAATTTTTCGTTTTCCC 58.015 29.630 0.00 0.00 0.00 3.97
560 561 9.016438 TCCTTTTCGGTTTATAAAGCTTATGTT 57.984 29.630 21.54 0.00 34.41 2.71
561 562 8.570068 TCCTTTTCGGTTTATAAAGCTTATGT 57.430 30.769 21.54 0.00 34.41 2.29
562 563 8.129211 CCTCCTTTTCGGTTTATAAAGCTTATG 58.871 37.037 21.54 9.10 34.41 1.90
563 564 8.050930 TCCTCCTTTTCGGTTTATAAAGCTTAT 58.949 33.333 21.54 0.00 34.41 1.73
564 565 7.396418 TCCTCCTTTTCGGTTTATAAAGCTTA 58.604 34.615 21.54 9.70 34.41 3.09
565 566 6.243148 TCCTCCTTTTCGGTTTATAAAGCTT 58.757 36.000 21.54 0.00 34.41 3.74
566 567 5.812286 TCCTCCTTTTCGGTTTATAAAGCT 58.188 37.500 21.54 0.00 34.41 3.74
567 568 6.150641 ACTTCCTCCTTTTCGGTTTATAAAGC 59.849 38.462 15.85 15.85 0.00 3.51
568 569 7.683437 ACTTCCTCCTTTTCGGTTTATAAAG 57.317 36.000 0.00 0.00 0.00 1.85
569 570 8.377799 AGTACTTCCTCCTTTTCGGTTTATAAA 58.622 33.333 0.00 0.00 0.00 1.40
570 571 7.910584 AGTACTTCCTCCTTTTCGGTTTATAA 58.089 34.615 0.00 0.00 0.00 0.98
571 572 7.486407 AGTACTTCCTCCTTTTCGGTTTATA 57.514 36.000 0.00 0.00 0.00 0.98
572 573 6.370186 AGTACTTCCTCCTTTTCGGTTTAT 57.630 37.500 0.00 0.00 0.00 1.40
573 574 5.813513 AGTACTTCCTCCTTTTCGGTTTA 57.186 39.130 0.00 0.00 0.00 2.01
574 575 4.701651 AGTACTTCCTCCTTTTCGGTTT 57.298 40.909 0.00 0.00 0.00 3.27
575 576 4.701651 AAGTACTTCCTCCTTTTCGGTT 57.298 40.909 1.12 0.00 0.00 4.44
576 577 5.813513 TTAAGTACTTCCTCCTTTTCGGT 57.186 39.130 12.39 0.00 0.00 4.69
577 578 6.403878 TGATTAAGTACTTCCTCCTTTTCGG 58.596 40.000 12.39 0.00 0.00 4.30
578 579 6.036191 GCTGATTAAGTACTTCCTCCTTTTCG 59.964 42.308 12.39 0.00 0.00 3.46
579 580 6.316640 GGCTGATTAAGTACTTCCTCCTTTTC 59.683 42.308 12.39 0.14 0.00 2.29
580 581 6.181190 GGCTGATTAAGTACTTCCTCCTTTT 58.819 40.000 12.39 0.00 0.00 2.27
581 582 5.339282 GGGCTGATTAAGTACTTCCTCCTTT 60.339 44.000 12.39 0.00 0.00 3.11
582 583 4.164413 GGGCTGATTAAGTACTTCCTCCTT 59.836 45.833 12.39 0.00 0.00 3.36
583 584 3.712218 GGGCTGATTAAGTACTTCCTCCT 59.288 47.826 12.39 0.00 0.00 3.69
584 585 3.181453 GGGGCTGATTAAGTACTTCCTCC 60.181 52.174 12.39 6.06 0.00 4.30
585 586 3.492829 CGGGGCTGATTAAGTACTTCCTC 60.493 52.174 12.39 10.52 0.00 3.71
586 587 2.434702 CGGGGCTGATTAAGTACTTCCT 59.565 50.000 12.39 0.00 0.00 3.36
587 588 2.169978 ACGGGGCTGATTAAGTACTTCC 59.830 50.000 12.39 5.80 0.00 3.46
588 589 3.538634 ACGGGGCTGATTAAGTACTTC 57.461 47.619 12.39 0.00 0.00 3.01
589 590 5.046087 AGTTTACGGGGCTGATTAAGTACTT 60.046 40.000 13.68 13.68 0.00 2.24
590 591 4.468868 AGTTTACGGGGCTGATTAAGTACT 59.531 41.667 0.00 0.00 0.00 2.73
591 592 4.763073 AGTTTACGGGGCTGATTAAGTAC 58.237 43.478 0.00 0.00 0.00 2.73
592 593 4.141869 GGAGTTTACGGGGCTGATTAAGTA 60.142 45.833 0.00 0.00 0.00 2.24
593 594 3.370209 GGAGTTTACGGGGCTGATTAAGT 60.370 47.826 0.00 0.00 0.00 2.24
594 595 3.203716 GGAGTTTACGGGGCTGATTAAG 58.796 50.000 0.00 0.00 0.00 1.85
595 596 2.092807 GGGAGTTTACGGGGCTGATTAA 60.093 50.000 0.00 0.00 0.00 1.40
596 597 1.487558 GGGAGTTTACGGGGCTGATTA 59.512 52.381 0.00 0.00 0.00 1.75
597 598 0.255033 GGGAGTTTACGGGGCTGATT 59.745 55.000 0.00 0.00 0.00 2.57
598 599 1.632965 GGGGAGTTTACGGGGCTGAT 61.633 60.000 0.00 0.00 0.00 2.90
599 600 2.295602 GGGGAGTTTACGGGGCTGA 61.296 63.158 0.00 0.00 0.00 4.26
600 601 2.271173 GGGGAGTTTACGGGGCTG 59.729 66.667 0.00 0.00 0.00 4.85
601 602 3.396570 CGGGGAGTTTACGGGGCT 61.397 66.667 0.00 0.00 0.00 5.19
602 603 3.709633 ACGGGGAGTTTACGGGGC 61.710 66.667 0.00 0.00 0.00 5.80
603 604 1.829523 TTCACGGGGAGTTTACGGGG 61.830 60.000 0.00 0.00 0.00 5.73
604 605 0.671472 GTTCACGGGGAGTTTACGGG 60.671 60.000 0.00 0.00 0.00 5.28
605 606 0.671472 GGTTCACGGGGAGTTTACGG 60.671 60.000 0.00 0.00 0.00 4.02
606 607 0.671472 GGGTTCACGGGGAGTTTACG 60.671 60.000 0.00 0.00 0.00 3.18
607 608 0.321919 GGGGTTCACGGGGAGTTTAC 60.322 60.000 0.00 0.00 0.00 2.01
608 609 1.491274 GGGGGTTCACGGGGAGTTTA 61.491 60.000 0.00 0.00 0.00 2.01
609 610 2.837326 GGGGGTTCACGGGGAGTTT 61.837 63.158 0.00 0.00 0.00 2.66
610 611 3.254617 GGGGGTTCACGGGGAGTT 61.255 66.667 0.00 0.00 0.00 3.01
611 612 4.265507 AGGGGGTTCACGGGGAGT 62.266 66.667 0.00 0.00 0.00 3.85
612 613 3.717294 CAGGGGGTTCACGGGGAG 61.717 72.222 0.00 0.00 0.00 4.30
613 614 4.585216 ACAGGGGGTTCACGGGGA 62.585 66.667 0.00 0.00 0.00 4.81
614 615 4.344865 CACAGGGGGTTCACGGGG 62.345 72.222 0.00 0.00 0.00 5.73
615 616 3.246112 TCACAGGGGGTTCACGGG 61.246 66.667 0.00 0.00 0.00 5.28
616 617 2.214216 TCTCACAGGGGGTTCACGG 61.214 63.158 0.00 0.00 0.00 4.94
617 618 1.004918 GTCTCACAGGGGGTTCACG 60.005 63.158 0.00 0.00 0.00 4.35
618 619 1.004918 CGTCTCACAGGGGGTTCAC 60.005 63.158 0.00 0.00 0.00 3.18
619 620 2.879233 GCGTCTCACAGGGGGTTCA 61.879 63.158 0.00 0.00 0.00 3.18
620 621 2.047179 GCGTCTCACAGGGGGTTC 60.047 66.667 0.00 0.00 0.00 3.62
621 622 2.147387 AAGCGTCTCACAGGGGGTT 61.147 57.895 0.00 0.00 0.00 4.11
622 623 2.526873 AAGCGTCTCACAGGGGGT 60.527 61.111 0.00 0.00 0.00 4.95
623 624 2.046892 CAAGCGTCTCACAGGGGG 60.047 66.667 0.00 0.00 0.00 5.40
624 625 2.738213 AAGCAAGCGTCTCACAGGGG 62.738 60.000 0.00 0.00 0.00 4.79
625 626 0.037326 TAAGCAAGCGTCTCACAGGG 60.037 55.000 0.00 0.00 0.00 4.45
626 627 1.728971 CTTAAGCAAGCGTCTCACAGG 59.271 52.381 0.00 0.00 0.00 4.00
627 628 2.408050 ACTTAAGCAAGCGTCTCACAG 58.592 47.619 1.29 0.00 34.94 3.66
628 629 2.526304 ACTTAAGCAAGCGTCTCACA 57.474 45.000 1.29 0.00 34.94 3.58
629 630 3.123116 GGTAACTTAAGCAAGCGTCTCAC 59.877 47.826 1.29 0.00 34.94 3.51
630 631 3.323243 GGTAACTTAAGCAAGCGTCTCA 58.677 45.455 1.29 0.00 34.94 3.27
631 632 3.993508 GGTAACTTAAGCAAGCGTCTC 57.006 47.619 1.29 0.00 34.94 3.36
651 656 1.081892 AGCGCTGTCATTGCTTACAG 58.918 50.000 10.39 0.00 44.79 2.74
680 685 2.427095 TGCATCTCAAGCGAGCTACTTA 59.573 45.455 0.00 0.00 39.30 2.24
695 700 0.403271 AGCCTTGTTGGAGTGCATCT 59.597 50.000 0.00 0.00 38.35 2.90
754 759 9.874215 GCCAAGTTATACGAGGTTAATTAATTC 57.126 33.333 3.39 2.42 0.00 2.17
786 791 8.706492 AGATAATCGGTCGTTGTTGTTTATTA 57.294 30.769 0.00 0.00 0.00 0.98
806 811 5.810587 GCGATGGATTAATTAGCGGAGATAA 59.189 40.000 11.49 0.00 44.59 1.75
807 812 5.348986 GCGATGGATTAATTAGCGGAGATA 58.651 41.667 11.49 0.00 0.00 1.98
818 823 4.316205 TCTGTGTACGCGATGGATTAAT 57.684 40.909 15.93 0.00 0.00 1.40
828 833 0.935831 TCGTGGTTTCTGTGTACGCG 60.936 55.000 3.53 3.53 34.98 6.01
834 839 2.494059 AGATGGTTCGTGGTTTCTGTG 58.506 47.619 0.00 0.00 0.00 3.66
839 844 5.768164 ACTTGATTAAGATGGTTCGTGGTTT 59.232 36.000 3.94 0.00 37.36 3.27
840 845 5.313712 ACTTGATTAAGATGGTTCGTGGTT 58.686 37.500 3.94 0.00 37.36 3.67
844 849 6.698380 AGTGTACTTGATTAAGATGGTTCGT 58.302 36.000 3.94 0.00 37.36 3.85
925 930 7.329588 TCAACTAGCTACGAATGATAGACAA 57.670 36.000 0.00 0.00 0.00 3.18
947 961 8.383175 AGAAAAGGTTCCTATGTTGTAAGATCA 58.617 33.333 0.00 0.00 33.92 2.92
954 968 6.128138 AGCTAGAAAAGGTTCCTATGTTGT 57.872 37.500 0.00 0.00 33.92 3.32
1176 1191 2.355115 GGGGAGGCGTCCATGTTT 59.645 61.111 25.86 0.00 46.07 2.83
1245 1264 3.127533 GGAGCGTGCACATGGGAC 61.128 66.667 18.64 0.00 33.95 4.46
1303 1344 1.815421 CTCCACGCCTACATGCACC 60.815 63.158 0.00 0.00 0.00 5.01
1580 1626 1.852157 TTGCTGGGGCGGAAGAAGAT 61.852 55.000 0.00 0.00 42.25 2.40
1683 1736 1.137872 CCCAGCTACTCCAACAGCTAG 59.862 57.143 0.00 0.00 46.26 3.42
1709 1775 4.587262 TCAACAGTACAGCACCGGATATAT 59.413 41.667 9.46 0.00 0.00 0.86
1710 1776 3.955551 TCAACAGTACAGCACCGGATATA 59.044 43.478 9.46 0.00 0.00 0.86
1742 1811 3.951775 AAACCACTGCAACAACAGAAA 57.048 38.095 0.00 0.00 40.25 2.52
1764 1833 6.972901 GCGGTTGCTAATTAAAAGAAGCTTAT 59.027 34.615 0.00 0.00 38.39 1.73
1806 1875 8.655901 TGACATACACTGCCCTAATCATATTAA 58.344 33.333 0.00 0.00 0.00 1.40
1807 1876 8.201242 TGACATACACTGCCCTAATCATATTA 57.799 34.615 0.00 0.00 0.00 0.98
1808 1877 7.078249 TGACATACACTGCCCTAATCATATT 57.922 36.000 0.00 0.00 0.00 1.28
1809 1878 6.686484 TGACATACACTGCCCTAATCATAT 57.314 37.500 0.00 0.00 0.00 1.78
1810 1879 6.043127 ACATGACATACACTGCCCTAATCATA 59.957 38.462 0.00 0.00 0.00 2.15
1857 1928 7.575505 ACTAGTTATACAGAGAGCCTTGTAGA 58.424 38.462 0.00 0.00 0.00 2.59
1936 2067 5.065731 CGAGCTTCATGCCTTTTCTCTAAAT 59.934 40.000 0.00 0.00 44.23 1.40
1958 2089 6.374053 TGATGGCTTCATTAATTTCAAGTCGA 59.626 34.615 0.00 0.00 0.00 4.20
1965 2096 7.099120 AGTTGGTTGATGGCTTCATTAATTTC 58.901 34.615 3.72 0.00 33.34 2.17
1988 2125 6.952358 TGTAGTCAGTTCCTTTGTATCCTAGT 59.048 38.462 0.00 0.00 0.00 2.57
2009 2146 4.647424 TGTCAAGTTTTGGCCTTTGTAG 57.353 40.909 3.32 0.00 33.37 2.74
2174 2313 0.874607 GTGTTCGTTGGCGTCTCTGT 60.875 55.000 0.00 0.00 39.49 3.41
2233 2372 1.666872 CCCTTTGGGTCGACGACAC 60.667 63.158 27.77 25.63 38.25 3.67
2295 2436 1.842052 TATCCTCGTGTAGTGGCACA 58.158 50.000 21.41 2.83 39.19 4.57
2313 2454 4.018324 TGGGTTGTTGGCCTGTATACAATA 60.018 41.667 3.32 0.00 33.57 1.90
2320 2461 0.774276 TCATGGGTTGTTGGCCTGTA 59.226 50.000 3.32 0.00 0.00 2.74
2443 2584 1.234821 GAGATTGCGGTTGTGGTGAA 58.765 50.000 0.00 0.00 0.00 3.18
2444 2585 0.605319 GGAGATTGCGGTTGTGGTGA 60.605 55.000 0.00 0.00 0.00 4.02
2464 2605 2.201022 CGTCGTCCTAGGGATGGGG 61.201 68.421 9.46 0.00 39.09 4.96
2506 2647 2.126228 GGACGATGGCGACGTTCA 60.126 61.111 9.78 0.00 43.97 3.18
2517 2658 2.045340 CCTTTTGGGCCGGACGAT 60.045 61.111 5.05 0.00 35.46 3.73
2573 2719 0.740868 CGAGCTTCCAATCTCGCCAA 60.741 55.000 0.03 0.00 44.30 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.