Multiple sequence alignment - TraesCS1D01G338600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G338600 chr1D 100.000 2911 0 0 1 2911 427699576 427696666 0.000000e+00 5376.0
1 TraesCS1D01G338600 chr1D 95.356 1981 51 18 92 2059 487265344 487267296 0.000000e+00 3110.0
2 TraesCS1D01G338600 chr1D 100.000 862 0 0 1 862 487264472 487265333 0.000000e+00 1592.0
3 TraesCS1D01G338600 chr1D 91.406 256 21 1 722 977 487200251 487200505 1.660000e-92 350.0
4 TraesCS1D01G338600 chr1D 92.308 169 13 0 723 891 487199953 487200121 1.040000e-59 241.0
5 TraesCS1D01G338600 chr1D 82.745 255 28 5 1187 1428 487204525 487204776 2.270000e-51 213.0
6 TraesCS1D01G338600 chr1D 90.654 107 5 1 2198 2299 487267380 487267486 1.410000e-28 137.0
7 TraesCS1D01G338600 chr1A 88.327 1662 70 46 677 2300 584822362 584823937 0.000000e+00 1881.0
8 TraesCS1D01G338600 chr1A 88.742 604 29 18 1697 2300 585140615 585141179 0.000000e+00 702.0
9 TraesCS1D01G338600 chr1A 90.722 485 36 8 679 1163 585140122 585140597 3.160000e-179 638.0
10 TraesCS1D01G338600 chr1A 86.644 584 40 21 1718 2290 585182026 585182582 1.920000e-171 612.0
11 TraesCS1D01G338600 chr1A 94.419 215 8 1 2700 2910 584831404 584831618 7.780000e-86 327.0
12 TraesCS1D01G338600 chr1A 94.419 215 8 1 2700 2910 585176014 585176228 7.780000e-86 327.0
13 TraesCS1D01G338600 chr1A 84.936 312 37 6 836 1146 584781397 584781699 1.010000e-79 307.0
14 TraesCS1D01G338600 chr1A 89.958 239 12 6 2472 2709 584824824 584825051 6.100000e-77 298.0
15 TraesCS1D01G338600 chr1A 89.958 239 11 7 2472 2709 585142776 585143002 2.190000e-76 296.0
16 TraesCS1D01G338600 chr1A 89.958 239 11 7 2472 2709 585152634 585152860 2.190000e-76 296.0
17 TraesCS1D01G338600 chr1A 89.540 239 11 7 2472 2709 585162494 585162719 1.020000e-74 291.0
18 TraesCS1D01G338600 chr1A 97.872 94 2 0 2280 2373 584823998 584824091 2.320000e-36 163.0
19 TraesCS1D01G338600 chr1A 97.872 94 2 0 2280 2373 585141240 585141333 2.320000e-36 163.0
20 TraesCS1D01G338600 chr1A 98.387 62 1 0 2410 2471 584824090 584824151 3.070000e-20 110.0
21 TraesCS1D01G338600 chr1A 98.387 62 1 0 2410 2471 585141332 585141393 3.070000e-20 110.0
22 TraesCS1D01G338600 chr1A 91.071 56 5 0 793 848 347944212 347944267 3.110000e-10 76.8
23 TraesCS1D01G338600 chrUn 84.615 325 44 5 317 639 392418209 392417889 4.680000e-83 318.0
24 TraesCS1D01G338600 chrUn 80.299 335 58 8 317 647 93876179 93876509 2.240000e-61 246.0
25 TraesCS1D01G338600 chrUn 90.909 143 9 4 2568 2709 433916598 433916737 3.830000e-44 189.0
26 TraesCS1D01G338600 chr5A 84.615 325 44 5 317 639 17387244 17386924 4.680000e-83 318.0
27 TraesCS1D01G338600 chr5A 84.615 325 44 5 317 639 17389534 17389214 4.680000e-83 318.0
28 TraesCS1D01G338600 chr4B 89.627 241 24 1 1430 1669 471113313 471113553 3.640000e-79 305.0
29 TraesCS1D01G338600 chr4B 89.121 239 25 1 1432 1669 603194759 603194521 2.190000e-76 296.0
30 TraesCS1D01G338600 chr4B 88.285 239 27 1 1432 1669 512766222 512766460 4.750000e-73 285.0
31 TraesCS1D01G338600 chr3B 84.244 311 47 2 330 638 102577027 102577337 4.710000e-78 302.0
32 TraesCS1D01G338600 chr2D 89.300 243 22 4 1432 1673 13547328 13547567 4.710000e-78 302.0
33 TraesCS1D01G338600 chr2D 88.934 244 23 4 1432 1673 13534712 13534953 6.100000e-77 298.0
34 TraesCS1D01G338600 chr7B 87.755 245 29 1 1432 1675 414077419 414077175 4.750000e-73 285.0
35 TraesCS1D01G338600 chr7B 80.625 320 52 8 323 636 617835352 617835037 3.750000e-59 239.0
36 TraesCS1D01G338600 chr7D 86.508 252 30 4 1430 1678 432329204 432329454 1.030000e-69 274.0
37 TraesCS1D01G338600 chr7D 81.790 324 57 2 317 638 521733891 521734214 1.330000e-68 270.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G338600 chr1D 427696666 427699576 2910 True 5376.0 5376 100.000000 1 2911 1 chr1D.!!$R1 2910
1 TraesCS1D01G338600 chr1D 487264472 487267486 3014 False 1613.0 3110 95.336667 1 2299 3 chr1D.!!$F3 2298
2 TraesCS1D01G338600 chr1D 487199953 487200505 552 False 295.5 350 91.857000 722 977 2 chr1D.!!$F2 255
3 TraesCS1D01G338600 chr1A 584822362 584825051 2689 False 613.0 1881 93.636000 677 2709 4 chr1A.!!$F8 2032
4 TraesCS1D01G338600 chr1A 585182026 585182582 556 False 612.0 612 86.644000 1718 2290 1 chr1A.!!$F7 572
5 TraesCS1D01G338600 chr1A 585140122 585143002 2880 False 381.8 702 93.136200 679 2709 5 chr1A.!!$F9 2030
6 TraesCS1D01G338600 chr5A 17386924 17389534 2610 True 318.0 318 84.615000 317 639 2 chr5A.!!$R1 322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1202 2318 5.683876 AAGCCTCATACATGTACTCACTT 57.316 39.13 7.96 6.01 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2548 6337 0.187117 TTTGGTGGGATGACTTGCCA 59.813 50.0 0.0 0.0 44.76 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1202 2318 5.683876 AAGCCTCATACATGTACTCACTT 57.316 39.130 7.96 6.01 0.00 3.16
1374 3018 1.287503 GGATCTGCTCGGGATCGTC 59.712 63.158 0.00 0.00 40.11 4.20
1375 3019 1.456196 GGATCTGCTCGGGATCGTCA 61.456 60.000 0.00 0.00 40.11 4.35
1667 3372 4.717280 CCAATAAACCAGGAGAGAGGTAGT 59.283 45.833 0.00 0.00 37.07 2.73
1668 3373 5.897824 CCAATAAACCAGGAGAGAGGTAGTA 59.102 44.000 0.00 0.00 37.07 1.82
1669 3374 6.183360 CCAATAAACCAGGAGAGAGGTAGTAC 60.183 46.154 0.00 0.00 37.07 2.73
1670 3375 4.399483 AAACCAGGAGAGAGGTAGTACA 57.601 45.455 2.06 0.00 37.07 2.90
1671 3376 4.611564 AACCAGGAGAGAGGTAGTACAT 57.388 45.455 2.06 0.00 37.07 2.29
1672 3377 5.728937 AACCAGGAGAGAGGTAGTACATA 57.271 43.478 2.06 0.00 37.07 2.29
1673 3378 5.051409 ACCAGGAGAGAGGTAGTACATAC 57.949 47.826 2.06 0.00 36.07 2.39
1674 3379 4.477581 ACCAGGAGAGAGGTAGTACATACA 59.522 45.833 2.06 0.00 36.07 2.29
1730 3435 3.370978 TGCGCTCTTGTTAGTTAATCAGC 59.629 43.478 9.73 0.00 0.00 4.26
1782 3487 0.310854 GTGGTTTCGAGCCAAAGTGG 59.689 55.000 11.61 0.00 41.55 4.00
2080 3926 8.520351 AGACATTATAACTTTAGTTTTGTGGGC 58.480 33.333 0.00 0.00 39.31 5.36
2081 3927 8.184304 ACATTATAACTTTAGTTTTGTGGGCA 57.816 30.769 0.00 0.00 39.31 5.36
2188 4036 5.497474 CCTGCTACAGGTTAATTAACTGGT 58.503 41.667 23.89 22.17 45.82 4.00
2189 4037 5.354234 CCTGCTACAGGTTAATTAACTGGTG 59.646 44.000 23.89 20.07 45.82 4.17
2190 4038 5.250200 TGCTACAGGTTAATTAACTGGTGG 58.750 41.667 23.89 22.09 36.47 4.61
2191 4039 5.221966 TGCTACAGGTTAATTAACTGGTGGT 60.222 40.000 23.89 17.04 36.47 4.16
2192 4040 6.013553 TGCTACAGGTTAATTAACTGGTGGTA 60.014 38.462 23.89 19.37 36.47 3.25
2193 4041 7.052248 GCTACAGGTTAATTAACTGGTGGTAT 58.948 38.462 23.89 9.28 36.47 2.73
2194 4042 8.206189 GCTACAGGTTAATTAACTGGTGGTATA 58.794 37.037 23.89 9.15 36.47 1.47
2387 4558 9.996554 TGTATCATTTTGTATGGATAGGTACTG 57.003 33.333 0.00 0.00 41.52 2.74
2390 4561 9.950496 ATCATTTTGTATGGATAGGTACTGATC 57.050 33.333 0.00 0.00 41.52 2.92
2391 4562 8.088365 TCATTTTGTATGGATAGGTACTGATCG 58.912 37.037 0.00 0.00 41.52 3.69
2392 4563 7.591421 TTTTGTATGGATAGGTACTGATCGA 57.409 36.000 0.00 0.00 41.52 3.59
2393 4564 7.591421 TTTGTATGGATAGGTACTGATCGAA 57.409 36.000 0.00 0.00 41.52 3.71
2394 4565 6.570672 TGTATGGATAGGTACTGATCGAAC 57.429 41.667 0.00 0.00 41.52 3.95
2395 4566 6.066032 TGTATGGATAGGTACTGATCGAACA 58.934 40.000 0.00 0.00 41.52 3.18
2396 4567 5.713792 ATGGATAGGTACTGATCGAACAG 57.286 43.478 19.95 19.95 41.52 3.16
2397 4568 3.318275 TGGATAGGTACTGATCGAACAGC 59.682 47.826 21.27 7.13 41.52 4.40
2398 4569 3.570550 GGATAGGTACTGATCGAACAGCT 59.429 47.826 21.27 13.19 41.52 4.24
2399 4570 2.949451 AGGTACTGATCGAACAGCTG 57.051 50.000 21.27 13.48 41.06 4.24
2400 4571 2.171840 AGGTACTGATCGAACAGCTGT 58.828 47.619 21.27 15.25 41.06 4.40
2401 4572 3.353557 AGGTACTGATCGAACAGCTGTA 58.646 45.455 22.01 4.74 41.06 2.74
2402 4573 3.128938 AGGTACTGATCGAACAGCTGTAC 59.871 47.826 22.01 16.22 41.06 2.90
2403 4574 2.264109 ACTGATCGAACAGCTGTACG 57.736 50.000 22.01 10.02 41.06 3.67
2404 4575 0.917259 CTGATCGAACAGCTGTACGC 59.083 55.000 22.01 11.78 39.57 4.42
2405 4576 0.242555 TGATCGAACAGCTGTACGCA 59.757 50.000 22.01 11.38 42.61 5.24
2406 4577 0.917259 GATCGAACAGCTGTACGCAG 59.083 55.000 22.01 9.95 45.23 5.18
2416 4587 3.255379 GTACGCAGCGTGCTAGCC 61.255 66.667 30.67 7.19 42.25 3.93
2547 6336 3.813443 AGCGATTCAACTCTATGGCAAT 58.187 40.909 0.00 0.00 0.00 3.56
2548 6337 4.202441 AGCGATTCAACTCTATGGCAATT 58.798 39.130 0.00 0.00 0.00 2.32
2549 6338 4.036027 AGCGATTCAACTCTATGGCAATTG 59.964 41.667 0.00 0.00 0.00 2.32
2550 6339 4.790766 GCGATTCAACTCTATGGCAATTGG 60.791 45.833 7.72 0.00 0.00 3.16
2551 6340 4.614946 GATTCAACTCTATGGCAATTGGC 58.385 43.478 24.20 24.20 43.74 4.52
2563 6352 1.404583 GCAATTGGCAAGTCATCCCAC 60.405 52.381 7.72 0.00 43.97 4.61
2595 6384 5.786401 AAACTCTATGCGATGTCTTTGTC 57.214 39.130 0.00 0.00 0.00 3.18
2596 6385 3.439293 ACTCTATGCGATGTCTTTGTCG 58.561 45.455 0.00 0.00 40.62 4.35
2608 6397 5.418310 TGTCTTTGTCGGTCTTCATTTTC 57.582 39.130 0.00 0.00 0.00 2.29
2644 6433 7.217200 TCAGTAATGAACAGTTGTAGCTTCTT 58.783 34.615 0.00 0.00 0.00 2.52
2666 6455 3.056250 TCTTGCTGAGACTTGATCCAGTC 60.056 47.826 17.19 17.19 43.26 3.51
2684 6473 9.944663 GATCCAGTCTTTATCGCTTCTATATAG 57.055 37.037 3.10 3.10 0.00 1.31
2686 6475 9.955102 TCCAGTCTTTATCGCTTCTATATAGTA 57.045 33.333 9.58 0.00 0.00 1.82
2709 6498 8.725148 AGTATTTTGCTTGCATATACTGATAGC 58.275 33.333 20.19 0.00 32.41 2.97
2710 6499 5.596268 TTTGCTTGCATATACTGATAGCG 57.404 39.130 0.00 0.00 36.27 4.26
2711 6500 4.519540 TGCTTGCATATACTGATAGCGA 57.480 40.909 0.00 0.00 36.27 4.93
2712 6501 4.488879 TGCTTGCATATACTGATAGCGAG 58.511 43.478 0.00 0.00 39.23 5.03
2714 6503 3.510388 TGCATATACTGATAGCGAGCC 57.490 47.619 0.00 0.00 0.00 4.70
2715 6504 2.159379 TGCATATACTGATAGCGAGCCG 60.159 50.000 0.00 0.00 0.00 5.52
2728 6517 1.713597 CGAGCCGCATATGCTAATGA 58.286 50.000 24.56 0.00 39.69 2.57
2729 6518 2.068519 CGAGCCGCATATGCTAATGAA 58.931 47.619 24.56 0.00 39.69 2.57
2730 6519 2.674852 CGAGCCGCATATGCTAATGAAT 59.325 45.455 24.56 4.37 39.69 2.57
2731 6520 3.242220 CGAGCCGCATATGCTAATGAATC 60.242 47.826 24.56 11.60 39.69 2.52
2732 6521 3.937706 GAGCCGCATATGCTAATGAATCT 59.062 43.478 24.56 9.64 39.69 2.40
2733 6522 3.937706 AGCCGCATATGCTAATGAATCTC 59.062 43.478 24.56 2.64 37.28 2.75
2734 6523 3.937706 GCCGCATATGCTAATGAATCTCT 59.062 43.478 24.56 0.00 39.32 3.10
2735 6524 4.394300 GCCGCATATGCTAATGAATCTCTT 59.606 41.667 24.56 0.00 39.32 2.85
2736 6525 5.447010 GCCGCATATGCTAATGAATCTCTTC 60.447 44.000 24.56 0.00 39.32 2.87
2737 6526 5.220359 CCGCATATGCTAATGAATCTCTTCG 60.220 44.000 24.56 3.88 39.32 3.79
2738 6527 5.347093 CGCATATGCTAATGAATCTCTTCGT 59.653 40.000 24.56 0.00 39.32 3.85
2739 6528 6.532311 GCATATGCTAATGAATCTCTTCGTG 58.468 40.000 20.64 0.00 38.21 4.35
2740 6529 6.532311 CATATGCTAATGAATCTCTTCGTGC 58.468 40.000 0.00 0.00 33.86 5.34
2741 6530 3.860641 TGCTAATGAATCTCTTCGTGCA 58.139 40.909 0.00 0.00 33.86 4.57
2742 6531 4.445453 TGCTAATGAATCTCTTCGTGCAT 58.555 39.130 0.00 0.00 33.86 3.96
2743 6532 4.271776 TGCTAATGAATCTCTTCGTGCATG 59.728 41.667 0.00 0.00 33.86 4.06
2744 6533 4.509230 GCTAATGAATCTCTTCGTGCATGA 59.491 41.667 3.97 3.97 33.86 3.07
2745 6534 5.178996 GCTAATGAATCTCTTCGTGCATGAT 59.821 40.000 9.96 0.00 33.86 2.45
2746 6535 6.293298 GCTAATGAATCTCTTCGTGCATGATT 60.293 38.462 9.96 0.00 33.86 2.57
2747 6536 6.446781 AATGAATCTCTTCGTGCATGATTT 57.553 33.333 9.96 0.00 33.86 2.17
2748 6537 7.558161 AATGAATCTCTTCGTGCATGATTTA 57.442 32.000 9.96 0.00 33.86 1.40
2749 6538 6.349973 TGAATCTCTTCGTGCATGATTTAC 57.650 37.500 9.96 0.00 33.86 2.01
2750 6539 5.005682 TGAATCTCTTCGTGCATGATTTACG 59.994 40.000 9.96 1.20 39.04 3.18
2751 6540 4.104696 TCTCTTCGTGCATGATTTACGA 57.895 40.909 9.96 3.82 44.08 3.43
2759 6548 7.389603 TCGTGCATGATTTACGAAGTTATAG 57.610 36.000 3.97 0.00 37.78 1.31
2760 6549 6.419710 TCGTGCATGATTTACGAAGTTATAGG 59.580 38.462 3.97 0.00 37.78 2.57
2761 6550 6.419710 CGTGCATGATTTACGAAGTTATAGGA 59.580 38.462 0.00 0.00 37.78 2.94
2762 6551 7.042992 CGTGCATGATTTACGAAGTTATAGGAA 60.043 37.037 0.00 0.00 37.78 3.36
2763 6552 8.276325 GTGCATGATTTACGAAGTTATAGGAAG 58.724 37.037 0.00 0.00 37.78 3.46
2764 6553 7.441157 TGCATGATTTACGAAGTTATAGGAAGG 59.559 37.037 0.00 0.00 37.78 3.46
2765 6554 7.656137 GCATGATTTACGAAGTTATAGGAAGGA 59.344 37.037 0.00 0.00 37.78 3.36
2766 6555 9.712305 CATGATTTACGAAGTTATAGGAAGGAT 57.288 33.333 0.00 0.00 37.78 3.24
2767 6556 9.930693 ATGATTTACGAAGTTATAGGAAGGATC 57.069 33.333 0.00 0.00 37.78 3.36
2768 6557 8.920174 TGATTTACGAAGTTATAGGAAGGATCA 58.080 33.333 0.00 0.00 37.78 2.92
2769 6558 9.760077 GATTTACGAAGTTATAGGAAGGATCAA 57.240 33.333 0.00 0.00 37.78 2.57
2771 6560 9.595823 TTTACGAAGTTATAGGAAGGATCAAAG 57.404 33.333 0.00 0.00 37.78 2.77
2772 6561 6.583562 ACGAAGTTATAGGAAGGATCAAAGG 58.416 40.000 0.00 0.00 37.78 3.11
2773 6562 6.383147 ACGAAGTTATAGGAAGGATCAAAGGA 59.617 38.462 0.00 0.00 37.78 3.36
2774 6563 7.071321 ACGAAGTTATAGGAAGGATCAAAGGAT 59.929 37.037 0.00 0.00 37.78 3.24
2775 6564 7.386299 CGAAGTTATAGGAAGGATCAAAGGATG 59.614 40.741 0.00 0.00 32.67 3.51
2776 6565 7.937700 AGTTATAGGAAGGATCAAAGGATGA 57.062 36.000 0.00 0.00 43.67 2.92
2820 6609 7.360575 AGTTGTCTAAACTAACTATTTGCCG 57.639 36.000 0.00 0.00 33.22 5.69
2821 6610 7.156673 AGTTGTCTAAACTAACTATTTGCCGA 58.843 34.615 0.00 0.00 33.22 5.54
2822 6611 7.331193 AGTTGTCTAAACTAACTATTTGCCGAG 59.669 37.037 0.00 0.00 33.22 4.63
2823 6612 6.694447 TGTCTAAACTAACTATTTGCCGAGT 58.306 36.000 0.00 0.00 0.00 4.18
2824 6613 7.156673 TGTCTAAACTAACTATTTGCCGAGTT 58.843 34.615 0.00 0.00 39.25 3.01
2825 6614 7.658575 TGTCTAAACTAACTATTTGCCGAGTTT 59.341 33.333 0.00 0.00 39.66 2.66
2826 6615 9.143631 GTCTAAACTAACTATTTGCCGAGTTTA 57.856 33.333 0.00 0.00 37.99 2.01
2827 6616 9.143631 TCTAAACTAACTATTTGCCGAGTTTAC 57.856 33.333 0.00 0.00 37.99 2.01
2828 6617 7.974482 AAACTAACTATTTGCCGAGTTTACT 57.026 32.000 0.00 0.00 35.84 2.24
2829 6618 6.963049 ACTAACTATTTGCCGAGTTTACTG 57.037 37.500 0.00 0.00 37.16 2.74
2830 6619 6.461640 ACTAACTATTTGCCGAGTTTACTGT 58.538 36.000 0.00 0.00 37.16 3.55
2831 6620 5.857822 AACTATTTGCCGAGTTTACTGTC 57.142 39.130 0.00 0.00 31.83 3.51
2832 6621 4.251268 ACTATTTGCCGAGTTTACTGTCC 58.749 43.478 0.00 0.00 0.00 4.02
2833 6622 2.623878 TTTGCCGAGTTTACTGTCCA 57.376 45.000 0.00 0.00 0.00 4.02
2834 6623 1.873698 TTGCCGAGTTTACTGTCCAC 58.126 50.000 0.00 0.00 0.00 4.02
2835 6624 0.753867 TGCCGAGTTTACTGTCCACA 59.246 50.000 0.00 0.00 0.00 4.17
2836 6625 1.139256 TGCCGAGTTTACTGTCCACAA 59.861 47.619 0.00 0.00 0.00 3.33
2837 6626 1.529865 GCCGAGTTTACTGTCCACAAC 59.470 52.381 0.00 0.00 0.00 3.32
2838 6627 2.140717 CCGAGTTTACTGTCCACAACC 58.859 52.381 0.00 0.00 0.00 3.77
2839 6628 2.140717 CGAGTTTACTGTCCACAACCC 58.859 52.381 0.00 0.00 0.00 4.11
2840 6629 2.224209 CGAGTTTACTGTCCACAACCCT 60.224 50.000 0.00 0.00 0.00 4.34
2841 6630 3.400255 GAGTTTACTGTCCACAACCCTC 58.600 50.000 0.00 0.00 0.00 4.30
2842 6631 2.105993 AGTTTACTGTCCACAACCCTCC 59.894 50.000 0.00 0.00 0.00 4.30
2843 6632 0.682852 TTACTGTCCACAACCCTCCG 59.317 55.000 0.00 0.00 0.00 4.63
2844 6633 0.470456 TACTGTCCACAACCCTCCGT 60.470 55.000 0.00 0.00 0.00 4.69
2845 6634 1.004918 CTGTCCACAACCCTCCGTC 60.005 63.158 0.00 0.00 0.00 4.79
2846 6635 2.346365 GTCCACAACCCTCCGTCC 59.654 66.667 0.00 0.00 0.00 4.79
2847 6636 2.122769 TCCACAACCCTCCGTCCA 60.123 61.111 0.00 0.00 0.00 4.02
2848 6637 1.766864 TCCACAACCCTCCGTCCAA 60.767 57.895 0.00 0.00 0.00 3.53
2849 6638 1.149627 CCACAACCCTCCGTCCAAA 59.850 57.895 0.00 0.00 0.00 3.28
2850 6639 0.251165 CCACAACCCTCCGTCCAAAT 60.251 55.000 0.00 0.00 0.00 2.32
2851 6640 1.003812 CCACAACCCTCCGTCCAAATA 59.996 52.381 0.00 0.00 0.00 1.40
2852 6641 2.356741 CCACAACCCTCCGTCCAAATAT 60.357 50.000 0.00 0.00 0.00 1.28
2853 6642 3.352648 CACAACCCTCCGTCCAAATATT 58.647 45.455 0.00 0.00 0.00 1.28
2854 6643 3.128589 CACAACCCTCCGTCCAAATATTG 59.871 47.826 0.00 0.00 0.00 1.90
2855 6644 3.245122 ACAACCCTCCGTCCAAATATTGT 60.245 43.478 0.00 0.00 0.00 2.71
2856 6645 2.999331 ACCCTCCGTCCAAATATTGTG 58.001 47.619 0.00 0.00 0.00 3.33
2857 6646 1.676006 CCCTCCGTCCAAATATTGTGC 59.324 52.381 0.00 0.00 0.00 4.57
2858 6647 2.364632 CCTCCGTCCAAATATTGTGCA 58.635 47.619 0.00 0.00 0.00 4.57
2859 6648 2.355756 CCTCCGTCCAAATATTGTGCAG 59.644 50.000 0.00 0.00 0.00 4.41
2860 6649 3.270027 CTCCGTCCAAATATTGTGCAGA 58.730 45.455 0.00 0.00 0.00 4.26
2861 6650 3.680490 TCCGTCCAAATATTGTGCAGAA 58.320 40.909 0.00 0.00 0.00 3.02
2862 6651 4.075682 TCCGTCCAAATATTGTGCAGAAA 58.924 39.130 0.00 0.00 0.00 2.52
2863 6652 4.155826 TCCGTCCAAATATTGTGCAGAAAG 59.844 41.667 0.00 0.00 0.00 2.62
2864 6653 3.853671 CGTCCAAATATTGTGCAGAAAGC 59.146 43.478 0.00 0.00 45.96 3.51
2878 6667 5.818136 GCAGAAAGCACCACTTATTATCA 57.182 39.130 0.00 0.00 44.79 2.15
2879 6668 6.382869 GCAGAAAGCACCACTTATTATCAT 57.617 37.500 0.00 0.00 44.79 2.45
2880 6669 6.204359 GCAGAAAGCACCACTTATTATCATG 58.796 40.000 0.00 0.00 44.79 3.07
2881 6670 6.038603 GCAGAAAGCACCACTTATTATCATGA 59.961 38.462 0.00 0.00 44.79 3.07
2882 6671 7.412853 CAGAAAGCACCACTTATTATCATGAC 58.587 38.462 0.00 0.00 37.75 3.06
2883 6672 7.281774 CAGAAAGCACCACTTATTATCATGACT 59.718 37.037 0.00 0.00 37.75 3.41
2884 6673 6.932356 AAGCACCACTTATTATCATGACTG 57.068 37.500 0.00 0.00 36.62 3.51
2885 6674 5.994250 AGCACCACTTATTATCATGACTGT 58.006 37.500 0.00 0.00 0.00 3.55
2886 6675 6.051717 AGCACCACTTATTATCATGACTGTC 58.948 40.000 0.00 0.00 0.00 3.51
2887 6676 5.237344 GCACCACTTATTATCATGACTGTCC 59.763 44.000 5.17 0.00 0.00 4.02
2888 6677 6.348498 CACCACTTATTATCATGACTGTCCA 58.652 40.000 5.17 0.00 0.00 4.02
2889 6678 6.258727 CACCACTTATTATCATGACTGTCCAC 59.741 42.308 5.17 0.00 0.00 4.02
2890 6679 6.070251 ACCACTTATTATCATGACTGTCCACA 60.070 38.462 5.17 0.00 0.00 4.17
2891 6680 6.994496 CCACTTATTATCATGACTGTCCACAT 59.006 38.462 5.17 0.00 0.00 3.21
2892 6681 7.500227 CCACTTATTATCATGACTGTCCACATT 59.500 37.037 5.17 0.00 0.00 2.71
2893 6682 9.546428 CACTTATTATCATGACTGTCCACATTA 57.454 33.333 5.17 0.00 0.00 1.90
2894 6683 9.547753 ACTTATTATCATGACTGTCCACATTAC 57.452 33.333 5.17 0.00 0.00 1.89
2895 6684 8.902540 TTATTATCATGACTGTCCACATTACC 57.097 34.615 5.17 0.00 0.00 2.85
2896 6685 3.627395 TCATGACTGTCCACATTACCC 57.373 47.619 5.17 0.00 0.00 3.69
2897 6686 2.909662 TCATGACTGTCCACATTACCCA 59.090 45.455 5.17 0.00 0.00 4.51
2898 6687 2.851263 TGACTGTCCACATTACCCAC 57.149 50.000 5.17 0.00 0.00 4.61
2899 6688 2.334977 TGACTGTCCACATTACCCACT 58.665 47.619 5.17 0.00 0.00 4.00
2900 6689 2.708861 TGACTGTCCACATTACCCACTT 59.291 45.455 5.17 0.00 0.00 3.16
2901 6690 3.137544 TGACTGTCCACATTACCCACTTT 59.862 43.478 5.17 0.00 0.00 2.66
2902 6691 3.486383 ACTGTCCACATTACCCACTTTG 58.514 45.455 0.00 0.00 0.00 2.77
2903 6692 2.228822 CTGTCCACATTACCCACTTTGC 59.771 50.000 0.00 0.00 0.00 3.68
2904 6693 1.544246 GTCCACATTACCCACTTTGCC 59.456 52.381 0.00 0.00 0.00 4.52
2905 6694 1.145945 TCCACATTACCCACTTTGCCA 59.854 47.619 0.00 0.00 0.00 4.92
2906 6695 1.967066 CCACATTACCCACTTTGCCAA 59.033 47.619 0.00 0.00 0.00 4.52
2907 6696 2.366916 CCACATTACCCACTTTGCCAAA 59.633 45.455 0.00 0.00 0.00 3.28
2908 6697 3.554752 CCACATTACCCACTTTGCCAAAG 60.555 47.826 15.47 15.47 44.10 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1202 2318 3.931130 CGGACGCAACGCAACACA 61.931 61.111 0.00 0.00 0.00 3.72
1374 3018 0.172578 TAGGATCGACGTGCTTGGTG 59.827 55.000 0.00 0.00 0.00 4.17
1375 3019 0.456221 CTAGGATCGACGTGCTTGGT 59.544 55.000 0.00 0.00 0.00 3.67
1428 3074 2.389715 ACCAGGACAGAGGTAGTATGC 58.610 52.381 0.00 0.00 36.07 3.14
1616 3321 6.925211 TCATTGTATTCCGTGCCAAATTTTA 58.075 32.000 0.00 0.00 0.00 1.52
1672 3377 9.923143 GGTGTGTATGTATGTATGTATGTATGT 57.077 33.333 0.00 0.00 0.00 2.29
1730 3435 6.561614 AGCATGCATATGAAAGAAAAGACTG 58.438 36.000 21.98 0.00 36.36 3.51
1782 3487 0.100503 GCGCACCCATTGGACAATAC 59.899 55.000 0.30 0.00 34.81 1.89
2077 3923 5.126067 TGCTTCTTACTTTCAGATATGCCC 58.874 41.667 0.00 0.00 0.00 5.36
2172 4020 8.349983 GCAATATACCACCAGTTAATTAACCTG 58.650 37.037 21.92 18.09 36.88 4.00
2173 4021 8.279361 AGCAATATACCACCAGTTAATTAACCT 58.721 33.333 21.92 9.05 36.88 3.50
2174 4022 8.349983 CAGCAATATACCACCAGTTAATTAACC 58.650 37.037 21.92 7.10 36.88 2.85
2175 4023 8.349983 CCAGCAATATACCACCAGTTAATTAAC 58.650 37.037 18.77 18.77 36.46 2.01
2176 4024 7.504238 CCCAGCAATATACCACCAGTTAATTAA 59.496 37.037 0.00 0.00 0.00 1.40
2177 4025 7.001674 CCCAGCAATATACCACCAGTTAATTA 58.998 38.462 0.00 0.00 0.00 1.40
2178 4026 5.833131 CCCAGCAATATACCACCAGTTAATT 59.167 40.000 0.00 0.00 0.00 1.40
2179 4027 5.103686 ACCCAGCAATATACCACCAGTTAAT 60.104 40.000 0.00 0.00 0.00 1.40
2180 4028 4.228666 ACCCAGCAATATACCACCAGTTAA 59.771 41.667 0.00 0.00 0.00 2.01
2181 4029 3.783642 ACCCAGCAATATACCACCAGTTA 59.216 43.478 0.00 0.00 0.00 2.24
2182 4030 2.580783 ACCCAGCAATATACCACCAGTT 59.419 45.455 0.00 0.00 0.00 3.16
2183 4031 2.092429 CACCCAGCAATATACCACCAGT 60.092 50.000 0.00 0.00 0.00 4.00
2184 4032 2.092429 ACACCCAGCAATATACCACCAG 60.092 50.000 0.00 0.00 0.00 4.00
2185 4033 1.919654 ACACCCAGCAATATACCACCA 59.080 47.619 0.00 0.00 0.00 4.17
2186 4034 2.729028 ACACCCAGCAATATACCACC 57.271 50.000 0.00 0.00 0.00 4.61
2187 4035 6.996282 AGTATTAACACCCAGCAATATACCAC 59.004 38.462 0.00 0.00 0.00 4.16
2188 4036 7.144234 AGTATTAACACCCAGCAATATACCA 57.856 36.000 0.00 0.00 0.00 3.25
2189 4037 9.734984 ATTAGTATTAACACCCAGCAATATACC 57.265 33.333 0.00 0.00 0.00 2.73
2191 4039 9.226606 GCATTAGTATTAACACCCAGCAATATA 57.773 33.333 0.00 0.00 0.00 0.86
2192 4040 7.944554 AGCATTAGTATTAACACCCAGCAATAT 59.055 33.333 0.00 0.00 0.00 1.28
2193 4041 7.287061 AGCATTAGTATTAACACCCAGCAATA 58.713 34.615 0.00 0.00 0.00 1.90
2194 4042 6.129179 AGCATTAGTATTAACACCCAGCAAT 58.871 36.000 0.00 0.00 0.00 3.56
2195 4043 5.505780 AGCATTAGTATTAACACCCAGCAA 58.494 37.500 0.00 0.00 0.00 3.91
2196 4044 5.110814 AGCATTAGTATTAACACCCAGCA 57.889 39.130 0.00 0.00 0.00 4.41
2237 4090 7.039784 AGCTCTGACAAAATAAATGCCAACTTA 60.040 33.333 0.00 0.00 0.00 2.24
2373 4544 5.183331 GCTGTTCGATCAGTACCTATCCATA 59.817 44.000 21.39 0.00 37.70 2.74
2374 4545 4.021894 GCTGTTCGATCAGTACCTATCCAT 60.022 45.833 21.39 0.00 37.70 3.41
2375 4546 3.318275 GCTGTTCGATCAGTACCTATCCA 59.682 47.826 21.39 0.00 37.70 3.41
2376 4547 3.570550 AGCTGTTCGATCAGTACCTATCC 59.429 47.826 21.39 5.62 37.70 2.59
2378 4549 3.954904 ACAGCTGTTCGATCAGTACCTAT 59.045 43.478 15.25 0.92 37.70 2.57
2380 4551 2.171840 ACAGCTGTTCGATCAGTACCT 58.828 47.619 15.25 9.95 37.70 3.08
2381 4552 2.656560 ACAGCTGTTCGATCAGTACC 57.343 50.000 15.25 8.07 37.70 3.34
2382 4553 3.099362 CGTACAGCTGTTCGATCAGTAC 58.901 50.000 34.02 18.12 40.51 2.73
2384 4555 1.732732 GCGTACAGCTGTTCGATCAGT 60.733 52.381 39.09 11.10 40.51 3.41
2385 4556 0.917259 GCGTACAGCTGTTCGATCAG 59.083 55.000 39.09 17.72 40.51 2.90
2386 4557 3.030209 GCGTACAGCTGTTCGATCA 57.970 52.632 39.09 14.85 40.51 2.92
2416 4587 2.087646 GTCTTAGCAAGAAGGGGCTTG 58.912 52.381 0.00 0.00 46.18 4.01
2548 6337 0.187117 TTTGGTGGGATGACTTGCCA 59.813 50.000 0.00 0.00 44.76 4.92
2549 6338 1.337118 TTTTGGTGGGATGACTTGCC 58.663 50.000 0.00 0.00 36.08 4.52
2575 6364 3.439293 CGACAAAGACATCGCATAGAGT 58.561 45.455 0.00 0.00 0.00 3.24
2578 6367 2.535984 GACCGACAAAGACATCGCATAG 59.464 50.000 0.00 0.00 37.01 2.23
2595 6384 6.603237 TGCATGTATAGAAAATGAAGACCG 57.397 37.500 0.00 0.00 0.00 4.79
2596 6385 8.158169 TGATGCATGTATAGAAAATGAAGACC 57.842 34.615 2.46 0.00 0.00 3.85
2608 6397 8.599055 ACTGTTCATTACTGATGCATGTATAG 57.401 34.615 2.46 0.00 35.64 1.31
2644 6433 2.902486 ACTGGATCAAGTCTCAGCAAGA 59.098 45.455 0.00 0.00 31.93 3.02
2684 6473 7.689812 CGCTATCAGTATATGCAAGCAAAATAC 59.310 37.037 16.76 16.76 36.63 1.89
2686 6475 6.427853 TCGCTATCAGTATATGCAAGCAAAAT 59.572 34.615 0.00 0.00 36.63 1.82
2688 6477 5.296748 TCGCTATCAGTATATGCAAGCAAA 58.703 37.500 0.00 0.00 36.63 3.68
2689 6478 4.881920 TCGCTATCAGTATATGCAAGCAA 58.118 39.130 0.00 0.00 36.63 3.91
2691 6480 3.305629 GCTCGCTATCAGTATATGCAAGC 59.694 47.826 0.00 0.00 34.69 4.01
2692 6481 3.862267 GGCTCGCTATCAGTATATGCAAG 59.138 47.826 0.00 0.00 0.00 4.01
2693 6482 3.673323 CGGCTCGCTATCAGTATATGCAA 60.673 47.826 0.00 0.00 0.00 4.08
2694 6483 2.159379 CGGCTCGCTATCAGTATATGCA 60.159 50.000 0.00 0.00 0.00 3.96
2715 6504 6.532311 CACGAAGAGATTCATTAGCATATGC 58.468 40.000 20.36 20.36 42.49 3.14
2716 6505 6.146673 TGCACGAAGAGATTCATTAGCATATG 59.853 38.462 0.00 0.00 0.00 1.78
2717 6506 6.226052 TGCACGAAGAGATTCATTAGCATAT 58.774 36.000 0.00 0.00 0.00 1.78
2718 6507 5.600696 TGCACGAAGAGATTCATTAGCATA 58.399 37.500 0.00 0.00 0.00 3.14
2719 6508 4.445453 TGCACGAAGAGATTCATTAGCAT 58.555 39.130 0.00 0.00 0.00 3.79
2720 6509 3.860641 TGCACGAAGAGATTCATTAGCA 58.139 40.909 0.00 0.00 0.00 3.49
2721 6510 4.509230 TCATGCACGAAGAGATTCATTAGC 59.491 41.667 0.00 0.00 0.00 3.09
2722 6511 6.782298 ATCATGCACGAAGAGATTCATTAG 57.218 37.500 0.00 0.00 0.00 1.73
2723 6512 7.558161 AAATCATGCACGAAGAGATTCATTA 57.442 32.000 0.00 0.00 0.00 1.90
2724 6513 6.446781 AAATCATGCACGAAGAGATTCATT 57.553 33.333 0.00 0.00 0.00 2.57
2725 6514 6.292542 CGTAAATCATGCACGAAGAGATTCAT 60.293 38.462 0.00 0.00 37.89 2.57
2726 6515 5.005682 CGTAAATCATGCACGAAGAGATTCA 59.994 40.000 0.00 0.00 37.89 2.57
2727 6516 5.232202 TCGTAAATCATGCACGAAGAGATTC 59.768 40.000 8.54 0.00 41.34 2.52
2728 6517 5.109210 TCGTAAATCATGCACGAAGAGATT 58.891 37.500 8.54 0.00 41.34 2.40
2729 6518 4.682787 TCGTAAATCATGCACGAAGAGAT 58.317 39.130 8.54 0.00 41.34 2.75
2730 6519 4.104696 TCGTAAATCATGCACGAAGAGA 57.895 40.909 8.54 0.00 41.34 3.10
2731 6520 4.840401 TTCGTAAATCATGCACGAAGAG 57.160 40.909 15.57 0.00 46.38 2.85
2735 6524 6.419710 CCTATAACTTCGTAAATCATGCACGA 59.580 38.462 0.00 7.34 42.47 4.35
2736 6525 6.419710 TCCTATAACTTCGTAAATCATGCACG 59.580 38.462 0.00 0.00 37.03 5.34
2737 6526 7.709269 TCCTATAACTTCGTAAATCATGCAC 57.291 36.000 0.00 0.00 0.00 4.57
2738 6527 7.441157 CCTTCCTATAACTTCGTAAATCATGCA 59.559 37.037 0.00 0.00 0.00 3.96
2739 6528 7.656137 TCCTTCCTATAACTTCGTAAATCATGC 59.344 37.037 0.00 0.00 0.00 4.06
2740 6529 9.712305 ATCCTTCCTATAACTTCGTAAATCATG 57.288 33.333 0.00 0.00 0.00 3.07
2741 6530 9.930693 GATCCTTCCTATAACTTCGTAAATCAT 57.069 33.333 0.00 0.00 0.00 2.45
2742 6531 8.920174 TGATCCTTCCTATAACTTCGTAAATCA 58.080 33.333 0.00 0.00 0.00 2.57
2743 6532 9.760077 TTGATCCTTCCTATAACTTCGTAAATC 57.240 33.333 0.00 0.00 0.00 2.17
2745 6534 9.595823 CTTTGATCCTTCCTATAACTTCGTAAA 57.404 33.333 0.00 0.00 0.00 2.01
2746 6535 8.202137 CCTTTGATCCTTCCTATAACTTCGTAA 58.798 37.037 0.00 0.00 0.00 3.18
2747 6536 7.562454 TCCTTTGATCCTTCCTATAACTTCGTA 59.438 37.037 0.00 0.00 0.00 3.43
2748 6537 6.383147 TCCTTTGATCCTTCCTATAACTTCGT 59.617 38.462 0.00 0.00 0.00 3.85
2749 6538 6.817184 TCCTTTGATCCTTCCTATAACTTCG 58.183 40.000 0.00 0.00 0.00 3.79
2750 6539 8.432805 TCATCCTTTGATCCTTCCTATAACTTC 58.567 37.037 0.00 0.00 0.00 3.01
2751 6540 8.337118 TCATCCTTTGATCCTTCCTATAACTT 57.663 34.615 0.00 0.00 0.00 2.66
2752 6541 7.937700 TCATCCTTTGATCCTTCCTATAACT 57.062 36.000 0.00 0.00 0.00 2.24
2755 6544 8.826765 GGTAATCATCCTTTGATCCTTCCTATA 58.173 37.037 0.00 0.00 44.51 1.31
2756 6545 7.519004 AGGTAATCATCCTTTGATCCTTCCTAT 59.481 37.037 0.00 0.00 44.51 2.57
2757 6546 6.851836 AGGTAATCATCCTTTGATCCTTCCTA 59.148 38.462 0.00 0.00 44.51 2.94
2758 6547 5.674035 AGGTAATCATCCTTTGATCCTTCCT 59.326 40.000 0.00 0.00 44.51 3.36
2759 6548 5.946486 AGGTAATCATCCTTTGATCCTTCC 58.054 41.667 0.00 0.00 44.51 3.46
2794 6583 9.095065 CGGCAAATAGTTAGTTTAGACAACTAT 57.905 33.333 11.81 11.81 39.27 2.12
2795 6584 8.306038 TCGGCAAATAGTTAGTTTAGACAACTA 58.694 33.333 9.33 9.33 35.68 2.24
2796 6585 7.156673 TCGGCAAATAGTTAGTTTAGACAACT 58.843 34.615 6.51 6.51 34.14 3.16
2797 6586 7.117379 ACTCGGCAAATAGTTAGTTTAGACAAC 59.883 37.037 0.00 0.00 0.00 3.32
2798 6587 7.156673 ACTCGGCAAATAGTTAGTTTAGACAA 58.843 34.615 0.00 0.00 0.00 3.18
2799 6588 6.694447 ACTCGGCAAATAGTTAGTTTAGACA 58.306 36.000 0.00 0.00 0.00 3.41
2800 6589 7.592439 AACTCGGCAAATAGTTAGTTTAGAC 57.408 36.000 0.00 0.00 34.23 2.59
2801 6590 9.143631 GTAAACTCGGCAAATAGTTAGTTTAGA 57.856 33.333 8.32 0.00 39.04 2.10
2802 6591 9.148104 AGTAAACTCGGCAAATAGTTAGTTTAG 57.852 33.333 8.32 0.00 39.04 1.85
2803 6592 8.928733 CAGTAAACTCGGCAAATAGTTAGTTTA 58.071 33.333 5.19 5.19 38.00 2.01
2804 6593 7.443272 ACAGTAAACTCGGCAAATAGTTAGTTT 59.557 33.333 6.73 6.73 39.66 2.66
2805 6594 6.932960 ACAGTAAACTCGGCAAATAGTTAGTT 59.067 34.615 0.00 0.00 34.91 2.24
2806 6595 6.461640 ACAGTAAACTCGGCAAATAGTTAGT 58.538 36.000 0.00 0.00 34.91 2.24
2807 6596 6.035758 GGACAGTAAACTCGGCAAATAGTTAG 59.964 42.308 0.00 0.00 34.91 2.34
2808 6597 5.870978 GGACAGTAAACTCGGCAAATAGTTA 59.129 40.000 0.00 0.00 34.91 2.24
2809 6598 4.694037 GGACAGTAAACTCGGCAAATAGTT 59.306 41.667 0.00 0.00 37.54 2.24
2810 6599 4.251268 GGACAGTAAACTCGGCAAATAGT 58.749 43.478 0.00 0.00 0.00 2.12
2811 6600 4.092968 GTGGACAGTAAACTCGGCAAATAG 59.907 45.833 0.00 0.00 0.00 1.73
2812 6601 3.998341 GTGGACAGTAAACTCGGCAAATA 59.002 43.478 0.00 0.00 0.00 1.40
2813 6602 2.812011 GTGGACAGTAAACTCGGCAAAT 59.188 45.455 0.00 0.00 0.00 2.32
2814 6603 2.215196 GTGGACAGTAAACTCGGCAAA 58.785 47.619 0.00 0.00 0.00 3.68
2815 6604 1.139256 TGTGGACAGTAAACTCGGCAA 59.861 47.619 0.00 0.00 0.00 4.52
2816 6605 0.753867 TGTGGACAGTAAACTCGGCA 59.246 50.000 0.00 0.00 0.00 5.69
2817 6606 1.529865 GTTGTGGACAGTAAACTCGGC 59.470 52.381 0.00 0.00 0.00 5.54
2818 6607 2.140717 GGTTGTGGACAGTAAACTCGG 58.859 52.381 0.00 0.00 0.00 4.63
2819 6608 2.140717 GGGTTGTGGACAGTAAACTCG 58.859 52.381 0.00 0.00 0.00 4.18
2820 6609 3.400255 GAGGGTTGTGGACAGTAAACTC 58.600 50.000 0.00 0.00 0.00 3.01
2821 6610 2.105993 GGAGGGTTGTGGACAGTAAACT 59.894 50.000 0.00 0.00 0.00 2.66
2822 6611 2.501261 GGAGGGTTGTGGACAGTAAAC 58.499 52.381 0.00 0.00 0.00 2.01
2823 6612 1.071071 CGGAGGGTTGTGGACAGTAAA 59.929 52.381 0.00 0.00 0.00 2.01
2824 6613 0.682852 CGGAGGGTTGTGGACAGTAA 59.317 55.000 0.00 0.00 0.00 2.24
2825 6614 0.470456 ACGGAGGGTTGTGGACAGTA 60.470 55.000 0.00 0.00 0.00 2.74
2826 6615 1.755393 GACGGAGGGTTGTGGACAGT 61.755 60.000 0.00 0.00 0.00 3.55
2827 6616 1.004918 GACGGAGGGTTGTGGACAG 60.005 63.158 0.00 0.00 0.00 3.51
2828 6617 2.513259 GGACGGAGGGTTGTGGACA 61.513 63.158 0.00 0.00 0.00 4.02
2829 6618 2.047213 TTGGACGGAGGGTTGTGGAC 62.047 60.000 0.00 0.00 0.00 4.02
2830 6619 1.346479 TTTGGACGGAGGGTTGTGGA 61.346 55.000 0.00 0.00 0.00 4.02
2831 6620 0.251165 ATTTGGACGGAGGGTTGTGG 60.251 55.000 0.00 0.00 0.00 4.17
2832 6621 2.483014 TATTTGGACGGAGGGTTGTG 57.517 50.000 0.00 0.00 0.00 3.33
2833 6622 3.245122 ACAATATTTGGACGGAGGGTTGT 60.245 43.478 0.00 0.00 34.12 3.32
2834 6623 3.128589 CACAATATTTGGACGGAGGGTTG 59.871 47.826 0.00 0.00 34.12 3.77
2835 6624 3.352648 CACAATATTTGGACGGAGGGTT 58.647 45.455 0.00 0.00 34.12 4.11
2836 6625 2.944094 GCACAATATTTGGACGGAGGGT 60.944 50.000 0.00 0.00 34.12 4.34
2837 6626 1.676006 GCACAATATTTGGACGGAGGG 59.324 52.381 0.00 0.00 34.12 4.30
2838 6627 2.355756 CTGCACAATATTTGGACGGAGG 59.644 50.000 0.00 0.00 34.12 4.30
2839 6628 3.270027 TCTGCACAATATTTGGACGGAG 58.730 45.455 0.00 0.00 34.12 4.63
2840 6629 3.342377 TCTGCACAATATTTGGACGGA 57.658 42.857 0.00 0.00 34.12 4.69
2841 6630 4.414852 CTTTCTGCACAATATTTGGACGG 58.585 43.478 0.00 0.00 34.12 4.79
2842 6631 3.853671 GCTTTCTGCACAATATTTGGACG 59.146 43.478 0.00 0.00 42.31 4.79
2856 6645 5.818136 TGATAATAAGTGGTGCTTTCTGC 57.182 39.130 0.00 0.00 38.57 4.26
2857 6646 7.281774 AGTCATGATAATAAGTGGTGCTTTCTG 59.718 37.037 0.00 0.00 38.57 3.02
2858 6647 7.281774 CAGTCATGATAATAAGTGGTGCTTTCT 59.718 37.037 0.00 0.00 38.57 2.52
2859 6648 7.066284 ACAGTCATGATAATAAGTGGTGCTTTC 59.934 37.037 0.00 0.00 38.57 2.62
2860 6649 6.886459 ACAGTCATGATAATAAGTGGTGCTTT 59.114 34.615 0.00 0.00 38.57 3.51
2861 6650 6.418101 ACAGTCATGATAATAAGTGGTGCTT 58.582 36.000 0.00 0.00 41.05 3.91
2862 6651 5.994250 ACAGTCATGATAATAAGTGGTGCT 58.006 37.500 0.00 0.00 0.00 4.40
2863 6652 5.237344 GGACAGTCATGATAATAAGTGGTGC 59.763 44.000 0.00 0.00 0.00 5.01
2864 6653 6.258727 GTGGACAGTCATGATAATAAGTGGTG 59.741 42.308 0.00 0.00 0.00 4.17
2865 6654 6.070251 TGTGGACAGTCATGATAATAAGTGGT 60.070 38.462 0.00 0.00 0.00 4.16
2866 6655 6.348498 TGTGGACAGTCATGATAATAAGTGG 58.652 40.000 0.00 0.00 0.00 4.00
2867 6656 8.442632 AATGTGGACAGTCATGATAATAAGTG 57.557 34.615 0.00 0.00 0.00 3.16
2868 6657 9.547753 GTAATGTGGACAGTCATGATAATAAGT 57.452 33.333 0.00 0.00 0.00 2.24
2869 6658 8.993121 GGTAATGTGGACAGTCATGATAATAAG 58.007 37.037 0.00 0.00 0.00 1.73
2870 6659 7.936847 GGGTAATGTGGACAGTCATGATAATAA 59.063 37.037 0.00 0.00 0.00 1.40
2871 6660 7.071824 TGGGTAATGTGGACAGTCATGATAATA 59.928 37.037 0.00 0.00 0.00 0.98
2872 6661 6.126507 TGGGTAATGTGGACAGTCATGATAAT 60.127 38.462 0.00 0.00 0.00 1.28
2873 6662 5.190726 TGGGTAATGTGGACAGTCATGATAA 59.809 40.000 0.00 0.00 0.00 1.75
2874 6663 4.719273 TGGGTAATGTGGACAGTCATGATA 59.281 41.667 0.00 0.00 0.00 2.15
2875 6664 3.523157 TGGGTAATGTGGACAGTCATGAT 59.477 43.478 0.00 0.00 0.00 2.45
2876 6665 2.909662 TGGGTAATGTGGACAGTCATGA 59.090 45.455 2.17 0.00 0.00 3.07
2877 6666 3.009723 GTGGGTAATGTGGACAGTCATG 58.990 50.000 2.17 0.00 0.00 3.07
2878 6667 2.912956 AGTGGGTAATGTGGACAGTCAT 59.087 45.455 2.17 0.00 0.00 3.06
2879 6668 2.334977 AGTGGGTAATGTGGACAGTCA 58.665 47.619 2.17 0.00 0.00 3.41
2880 6669 3.418684 AAGTGGGTAATGTGGACAGTC 57.581 47.619 0.00 0.00 0.00 3.51
2881 6670 3.486383 CAAAGTGGGTAATGTGGACAGT 58.514 45.455 0.00 0.00 0.00 3.55
2882 6671 2.228822 GCAAAGTGGGTAATGTGGACAG 59.771 50.000 0.00 0.00 0.00 3.51
2883 6672 2.235016 GCAAAGTGGGTAATGTGGACA 58.765 47.619 0.00 0.00 0.00 4.02
2884 6673 1.544246 GGCAAAGTGGGTAATGTGGAC 59.456 52.381 0.00 0.00 0.00 4.02
2885 6674 1.145945 TGGCAAAGTGGGTAATGTGGA 59.854 47.619 0.00 0.00 0.00 4.02
2886 6675 1.626686 TGGCAAAGTGGGTAATGTGG 58.373 50.000 0.00 0.00 0.00 4.17
2887 6676 3.652274 CTTTGGCAAAGTGGGTAATGTG 58.348 45.455 27.72 2.74 33.80 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.