Multiple sequence alignment - TraesCS1D01G326000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G326000 chr1D 100.000 2486 0 0 1 2486 418701604 418699119 0.000000e+00 4591.0
1 TraesCS1D01G326000 chr1D 94.466 524 25 4 1566 2088 418708216 418707696 0.000000e+00 804.0
2 TraesCS1D01G326000 chr1D 96.049 405 14 2 2083 2486 27967678 27967275 0.000000e+00 658.0
3 TraesCS1D01G326000 chr1D 97.059 102 2 1 1610 1711 116468478 116468578 1.180000e-38 171.0
4 TraesCS1D01G326000 chr1D 95.146 103 4 1 1610 1712 116460273 116460374 7.120000e-36 161.0
5 TraesCS1D01G326000 chr2D 95.815 1601 59 4 2 1595 38586824 38588423 0.000000e+00 2579.0
6 TraesCS1D01G326000 chr2D 95.059 1619 62 12 2 1609 536078 534467 0.000000e+00 2531.0
7 TraesCS1D01G326000 chr2D 95.066 1601 70 5 2 1595 38598106 38599704 0.000000e+00 2510.0
8 TraesCS1D01G326000 chr2D 96.000 400 16 0 2087 2486 620018836 620019235 0.000000e+00 651.0
9 TraesCS1D01G326000 chr2D 95.739 399 17 0 2088 2486 23329986 23329588 0.000000e+00 643.0
10 TraesCS1D01G326000 chr2D 95.739 399 16 1 2088 2486 594461282 594461679 2.080000e-180 641.0
11 TraesCS1D01G326000 chr2D 95.500 400 18 0 2087 2486 578575892 578575493 7.500000e-180 640.0
12 TraesCS1D01G326000 chr3D 95.418 1615 64 5 2 1609 47688177 47686566 0.000000e+00 2564.0
13 TraesCS1D01G326000 chr3D 93.750 480 26 2 1610 2088 47686623 47686147 0.000000e+00 717.0
14 TraesCS1D01G326000 chr3D 95.990 399 16 0 2088 2486 450850893 450850495 0.000000e+00 649.0
15 TraesCS1D01G326000 chr3D 96.552 58 2 0 1552 1609 47698818 47698761 2.040000e-16 97.1
16 TraesCS1D01G326000 chr6D 95.571 1603 58 8 2 1595 349550516 349552114 0.000000e+00 2555.0
17 TraesCS1D01G326000 chr6D 95.232 1615 67 6 2 1609 82084960 82086571 0.000000e+00 2547.0
18 TraesCS1D01G326000 chr6D 95.046 1615 68 8 2 1609 82070569 82072178 0.000000e+00 2529.0
19 TraesCS1D01G326000 chr6D 93.085 376 25 1 1708 2083 82068210 82067836 1.300000e-152 549.0
20 TraesCS1D01G326000 chr6D 95.098 102 5 0 1610 1711 82072121 82072222 7.120000e-36 161.0
21 TraesCS1D01G326000 chr6D 95.050 101 5 0 1610 1710 19454479 19454579 2.560000e-35 159.0
22 TraesCS1D01G326000 chr6D 97.619 42 1 0 1568 1609 19436414 19436455 3.430000e-09 73.1
23 TraesCS1D01G326000 chr5D 95.389 1605 56 7 2 1595 407680299 407678702 0.000000e+00 2538.0
24 TraesCS1D01G326000 chr4D 95.114 1617 67 7 2 1609 87399787 87401400 0.000000e+00 2538.0
25 TraesCS1D01G326000 chr4D 94.154 479 27 1 1610 2088 87401343 87401820 0.000000e+00 728.0
26 TraesCS1D01G326000 chr4D 93.971 481 26 2 1610 2088 87403604 87403125 0.000000e+00 725.0
27 TraesCS1D01G326000 chr4D 91.770 486 33 6 1606 2088 87390108 87390589 0.000000e+00 669.0
28 TraesCS1D01G326000 chr4A 93.235 473 27 4 1618 2088 509711489 509711020 0.000000e+00 691.0
29 TraesCS1D01G326000 chr7D 96.049 405 15 1 2082 2486 619412298 619412701 0.000000e+00 658.0
30 TraesCS1D01G326000 chrUn 95.750 400 17 0 2087 2486 105250238 105250637 0.000000e+00 645.0
31 TraesCS1D01G326000 chrUn 92.857 378 25 2 1713 2088 33273036 33272659 4.670000e-152 547.0
32 TraesCS1D01G326000 chrUn 91.731 387 30 2 1704 2088 33251405 33251791 1.010000e-148 536.0
33 TraesCS1D01G326000 chrUn 89.474 114 10 2 1600 1712 257737550 257737438 2.580000e-30 143.0
34 TraesCS1D01G326000 chrUn 90.741 108 9 1 1606 1712 397619749 397619856 2.580000e-30 143.0
35 TraesCS1D01G326000 chrUn 89.474 114 10 2 1600 1712 408135718 408135830 2.580000e-30 143.0
36 TraesCS1D01G326000 chrUn 87.805 123 12 3 1610 1729 395763983 395763861 9.270000e-30 141.0
37 TraesCS1D01G326000 chrUn 87.805 123 12 3 1610 1729 396200136 396200014 9.270000e-30 141.0
38 TraesCS1D01G326000 chr1A 95.533 403 18 0 2084 2486 588751324 588750922 0.000000e+00 645.0
39 TraesCS1D01G326000 chr1A 94.309 123 7 0 1610 1732 513772510 513772388 3.260000e-44 189.0
40 TraesCS1D01G326000 chr2B 88.272 162 10 4 1610 1769 7783488 7783334 4.220000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G326000 chr1D 418699119 418701604 2485 True 4591.0 4591 100.000 1 2486 1 chr1D.!!$R2 2485
1 TraesCS1D01G326000 chr1D 418707696 418708216 520 True 804.0 804 94.466 1566 2088 1 chr1D.!!$R3 522
2 TraesCS1D01G326000 chr2D 38586824 38588423 1599 False 2579.0 2579 95.815 2 1595 1 chr2D.!!$F1 1593
3 TraesCS1D01G326000 chr2D 534467 536078 1611 True 2531.0 2531 95.059 2 1609 1 chr2D.!!$R1 1607
4 TraesCS1D01G326000 chr2D 38598106 38599704 1598 False 2510.0 2510 95.066 2 1595 1 chr2D.!!$F2 1593
5 TraesCS1D01G326000 chr3D 47686147 47688177 2030 True 1640.5 2564 94.584 2 2088 2 chr3D.!!$R3 2086
6 TraesCS1D01G326000 chr6D 349550516 349552114 1598 False 2555.0 2555 95.571 2 1595 1 chr6D.!!$F4 1593
7 TraesCS1D01G326000 chr6D 82084960 82086571 1611 False 2547.0 2547 95.232 2 1609 1 chr6D.!!$F3 1607
8 TraesCS1D01G326000 chr6D 82070569 82072222 1653 False 1345.0 2529 95.072 2 1711 2 chr6D.!!$F5 1709
9 TraesCS1D01G326000 chr5D 407678702 407680299 1597 True 2538.0 2538 95.389 2 1595 1 chr5D.!!$R1 1593
10 TraesCS1D01G326000 chr4D 87399787 87401820 2033 False 1633.0 2538 94.634 2 2088 2 chr4D.!!$F2 2086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 995 6.463995 TTGATGGAAATAAACCTGGCATAC 57.536 37.5 0.0 0.0 0.0 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 2262 0.035739 GTGCCTAGAACCGGGACAAA 59.964 55.0 6.32 0.0 41.87 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 7.966753 TGCGCGAAACTATATAGATAACTTAGG 59.033 37.037 16.79 0.00 0.00 2.69
145 146 6.464465 GGAAAGCTAGCAGGACCTTTATATGA 60.464 42.308 18.83 0.00 0.00 2.15
374 377 7.255730 GGAAAAATATGCAGATATGCTTCAGGT 60.256 37.037 14.34 0.00 35.49 4.00
617 626 7.021998 AGAGCATATTAAGGGGAAGGATAAC 57.978 40.000 0.00 0.00 0.00 1.89
635 644 7.736893 AGGATAACACCTTACCTGACATATTC 58.263 38.462 0.00 0.00 36.86 1.75
676 685 7.722949 TGCAGAAATGAGGAAAGGATTATTT 57.277 32.000 0.00 0.00 0.00 1.40
724 733 9.533831 TTCTTTGGAGAAGAAAATAGGCTAAAT 57.466 29.630 0.00 0.00 36.99 1.40
952 968 8.794335 ACCAAAAGGAGAAACACTATATCTTC 57.206 34.615 0.00 0.00 0.00 2.87
979 995 6.463995 TTGATGGAAATAAACCTGGCATAC 57.536 37.500 0.00 0.00 0.00 2.39
1043 1059 9.097257 TGCAAAAAGAAAAGGACAAGATTTAAG 57.903 29.630 0.00 0.00 0.00 1.85
1111 1127 9.495572 CAAGAAAGGTATTAGGACCAGATTATC 57.504 37.037 0.00 0.00 42.47 1.75
1124 1140 6.240002 GGACCAGATTATCATACTGACCCAAT 60.240 42.308 0.00 0.00 34.07 3.16
1148 1164 9.512588 AATGGCTAAAGACTATATCCAAATGAG 57.487 33.333 0.00 0.00 0.00 2.90
1299 1318 6.676950 AGACAGCGAATACATAGATCAAGAG 58.323 40.000 0.00 0.00 0.00 2.85
1483 1502 1.533711 GACATAGCAGGGCATGGGT 59.466 57.895 0.00 0.00 0.00 4.51
1546 1565 0.462225 TCAATTATTCGGGCGCGGAA 60.462 50.000 23.74 15.70 0.00 4.30
1550 1569 1.952102 TTATTCGGGCGCGGAAGACT 61.952 55.000 23.74 1.45 0.00 3.24
1620 1640 9.675464 TTTGAATATTGATAATATACCCGACCC 57.325 33.333 0.00 0.00 33.04 4.46
1621 1641 7.494211 TGAATATTGATAATATACCCGACCCG 58.506 38.462 0.00 0.00 33.04 5.28
1622 1642 7.342541 TGAATATTGATAATATACCCGACCCGA 59.657 37.037 0.00 0.00 33.04 5.14
1623 1643 7.664552 ATATTGATAATATACCCGACCCGAA 57.335 36.000 0.00 0.00 32.44 4.30
1624 1644 6.555463 ATTGATAATATACCCGACCCGAAT 57.445 37.500 0.00 0.00 0.00 3.34
1625 1645 7.664552 ATTGATAATATACCCGACCCGAATA 57.335 36.000 0.00 0.00 0.00 1.75
1626 1646 7.664552 TTGATAATATACCCGACCCGAATAT 57.335 36.000 0.00 0.00 0.00 1.28
1627 1647 7.664552 TGATAATATACCCGACCCGAATATT 57.335 36.000 0.00 0.00 0.00 1.28
1628 1648 7.494211 TGATAATATACCCGACCCGAATATTG 58.506 38.462 0.00 0.00 0.00 1.90
1629 1649 7.342541 TGATAATATACCCGACCCGAATATTGA 59.657 37.037 0.00 0.00 0.00 2.57
1630 1650 6.555463 AATATACCCGACCCGAATATTGAT 57.445 37.500 0.00 0.00 0.00 2.57
1631 1651 7.664552 AATATACCCGACCCGAATATTGATA 57.335 36.000 0.00 0.00 0.00 2.15
1632 1652 3.955650 ACCCGACCCGAATATTGATAG 57.044 47.619 0.00 0.00 0.00 2.08
1633 1653 3.503365 ACCCGACCCGAATATTGATAGA 58.497 45.455 0.00 0.00 0.00 1.98
1634 1654 3.899360 ACCCGACCCGAATATTGATAGAA 59.101 43.478 0.00 0.00 0.00 2.10
1635 1655 4.345837 ACCCGACCCGAATATTGATAGAAA 59.654 41.667 0.00 0.00 0.00 2.52
1636 1656 5.012768 ACCCGACCCGAATATTGATAGAAAT 59.987 40.000 0.00 0.00 0.00 2.17
1637 1657 5.938125 CCCGACCCGAATATTGATAGAAATT 59.062 40.000 0.00 0.00 0.00 1.82
1638 1658 6.092259 CCCGACCCGAATATTGATAGAAATTC 59.908 42.308 0.00 0.00 0.00 2.17
1639 1659 6.092259 CCGACCCGAATATTGATAGAAATTCC 59.908 42.308 0.00 0.00 0.00 3.01
1640 1660 6.649141 CGACCCGAATATTGATAGAAATTCCA 59.351 38.462 0.00 0.00 0.00 3.53
1641 1661 7.172532 CGACCCGAATATTGATAGAAATTCCAA 59.827 37.037 0.00 0.00 0.00 3.53
1642 1662 8.396272 ACCCGAATATTGATAGAAATTCCAAG 57.604 34.615 0.00 0.00 0.00 3.61
1643 1663 8.217799 ACCCGAATATTGATAGAAATTCCAAGA 58.782 33.333 0.00 0.00 0.00 3.02
1644 1664 9.066892 CCCGAATATTGATAGAAATTCCAAGAA 57.933 33.333 0.00 0.00 0.00 2.52
1741 1761 2.749280 AATTTAAGCAGCCTTGGCAC 57.251 45.000 14.54 5.54 32.47 5.01
1819 1839 6.983307 GCTAATCGCATGAAGATCTATATGGT 59.017 38.462 16.50 0.00 38.92 3.55
1827 1847 7.576666 GCATGAAGATCTATATGGTCGAAGAGT 60.577 40.741 16.50 0.00 36.95 3.24
1854 1874 1.604378 GTACACAGAGGCCAGCCAT 59.396 57.895 12.03 0.00 38.92 4.40
2021 2041 2.691526 CGCATGTACCCTAGTAGGACAA 59.308 50.000 18.43 0.00 37.67 3.18
2042 2062 0.989164 CGTGCATACTACCGTGTGTG 59.011 55.000 0.00 0.00 35.02 3.82
2057 2077 4.695455 CCGTGTGTGAAATAAGTGAAGGAT 59.305 41.667 0.00 0.00 0.00 3.24
2088 2108 2.688666 CTCCCTAGCAGCCACCCA 60.689 66.667 0.00 0.00 0.00 4.51
2089 2109 3.009115 TCCCTAGCAGCCACCCAC 61.009 66.667 0.00 0.00 0.00 4.61
2090 2110 3.011517 CCCTAGCAGCCACCCACT 61.012 66.667 0.00 0.00 0.00 4.00
2091 2111 1.689233 CCCTAGCAGCCACCCACTA 60.689 63.158 0.00 0.00 0.00 2.74
2092 2112 1.690219 CCCTAGCAGCCACCCACTAG 61.690 65.000 0.00 0.00 33.42 2.57
2093 2113 0.978146 CCTAGCAGCCACCCACTAGT 60.978 60.000 0.00 0.00 32.03 2.57
2094 2114 1.688311 CCTAGCAGCCACCCACTAGTA 60.688 57.143 0.00 0.00 32.03 1.82
2095 2115 1.683917 CTAGCAGCCACCCACTAGTAG 59.316 57.143 0.00 0.00 0.00 2.57
2096 2116 0.041238 AGCAGCCACCCACTAGTAGA 59.959 55.000 3.59 0.00 0.00 2.59
2097 2117 0.902531 GCAGCCACCCACTAGTAGAA 59.097 55.000 3.59 0.00 0.00 2.10
2098 2118 1.278127 GCAGCCACCCACTAGTAGAAA 59.722 52.381 3.59 0.00 0.00 2.52
2099 2119 2.290071 GCAGCCACCCACTAGTAGAAAA 60.290 50.000 3.59 0.00 0.00 2.29
2100 2120 3.335579 CAGCCACCCACTAGTAGAAAAC 58.664 50.000 3.59 0.00 0.00 2.43
2101 2121 2.976882 AGCCACCCACTAGTAGAAAACA 59.023 45.455 3.59 0.00 0.00 2.83
2102 2122 3.008049 AGCCACCCACTAGTAGAAAACAG 59.992 47.826 3.59 0.00 0.00 3.16
2103 2123 3.868754 GCCACCCACTAGTAGAAAACAGG 60.869 52.174 3.59 0.09 0.00 4.00
2104 2124 3.307480 CCACCCACTAGTAGAAAACAGGG 60.307 52.174 3.59 8.70 40.88 4.45
2105 2125 2.305052 ACCCACTAGTAGAAAACAGGGC 59.695 50.000 3.59 0.00 38.64 5.19
2106 2126 2.572104 CCCACTAGTAGAAAACAGGGCT 59.428 50.000 3.59 0.00 0.00 5.19
2107 2127 3.009143 CCCACTAGTAGAAAACAGGGCTT 59.991 47.826 3.59 0.00 0.00 4.35
2108 2128 4.506802 CCCACTAGTAGAAAACAGGGCTTT 60.507 45.833 3.59 0.00 0.00 3.51
2109 2129 4.695928 CCACTAGTAGAAAACAGGGCTTTC 59.304 45.833 3.59 0.00 33.75 2.62
2110 2130 4.389077 CACTAGTAGAAAACAGGGCTTTCG 59.611 45.833 3.59 0.00 37.76 3.46
2111 2131 3.487120 AGTAGAAAACAGGGCTTTCGT 57.513 42.857 0.00 0.00 37.76 3.85
2112 2132 3.816994 AGTAGAAAACAGGGCTTTCGTT 58.183 40.909 0.00 0.00 37.76 3.85
2113 2133 3.813724 AGTAGAAAACAGGGCTTTCGTTC 59.186 43.478 0.00 0.00 37.76 3.95
2114 2134 1.602377 AGAAAACAGGGCTTTCGTTCG 59.398 47.619 0.00 0.00 37.76 3.95
2115 2135 0.666374 AAAACAGGGCTTTCGTTCGG 59.334 50.000 0.00 0.00 0.00 4.30
2116 2136 1.170290 AAACAGGGCTTTCGTTCGGG 61.170 55.000 0.00 0.00 0.00 5.14
2117 2137 3.431725 CAGGGCTTTCGTTCGGGC 61.432 66.667 0.00 0.00 0.00 6.13
2118 2138 4.717313 AGGGCTTTCGTTCGGGCC 62.717 66.667 0.00 0.00 44.57 5.80
2119 2139 4.717313 GGGCTTTCGTTCGGGCCT 62.717 66.667 0.84 0.00 43.62 5.19
2120 2140 3.431725 GGCTTTCGTTCGGGCCTG 61.432 66.667 4.71 4.71 41.20 4.85
2121 2141 3.431725 GCTTTCGTTCGGGCCTGG 61.432 66.667 12.87 0.00 0.00 4.45
2122 2142 3.431725 CTTTCGTTCGGGCCTGGC 61.432 66.667 12.87 11.05 0.00 4.85
2133 2153 3.777910 GCCTGGCCAGCCCATTTG 61.778 66.667 28.39 12.86 44.33 2.32
2134 2154 2.284112 CCTGGCCAGCCCATTTGT 60.284 61.111 28.39 0.00 44.33 2.83
2135 2155 2.353610 CCTGGCCAGCCCATTTGTC 61.354 63.158 28.39 0.00 44.33 3.18
2136 2156 2.283821 TGGCCAGCCCATTTGTCC 60.284 61.111 0.00 0.00 39.18 4.02
2137 2157 3.076916 GGCCAGCCCATTTGTCCC 61.077 66.667 0.00 0.00 0.00 4.46
2138 2158 3.451894 GCCAGCCCATTTGTCCCG 61.452 66.667 0.00 0.00 0.00 5.14
2139 2159 2.755469 CCAGCCCATTTGTCCCGG 60.755 66.667 0.00 0.00 0.00 5.73
2140 2160 2.035626 CAGCCCATTTGTCCCGGT 59.964 61.111 0.00 0.00 0.00 5.28
2141 2161 1.606313 CAGCCCATTTGTCCCGGTT 60.606 57.895 0.00 0.00 0.00 4.44
2142 2162 1.304134 AGCCCATTTGTCCCGGTTC 60.304 57.895 0.00 0.00 0.00 3.62
2143 2163 1.304134 GCCCATTTGTCCCGGTTCT 60.304 57.895 0.00 0.00 0.00 3.01
2144 2164 1.595093 GCCCATTTGTCCCGGTTCTG 61.595 60.000 0.00 0.00 0.00 3.02
2145 2165 1.595093 CCCATTTGTCCCGGTTCTGC 61.595 60.000 0.00 0.00 0.00 4.26
2146 2166 0.893270 CCATTTGTCCCGGTTCTGCA 60.893 55.000 0.00 0.00 0.00 4.41
2147 2167 0.240945 CATTTGTCCCGGTTCTGCAC 59.759 55.000 0.00 0.00 0.00 4.57
2148 2168 1.234615 ATTTGTCCCGGTTCTGCACG 61.235 55.000 0.00 0.00 0.00 5.34
2149 2169 2.313051 TTTGTCCCGGTTCTGCACGA 62.313 55.000 0.00 0.00 0.00 4.35
2150 2170 2.029964 GTCCCGGTTCTGCACGAA 59.970 61.111 0.00 0.00 0.00 3.85
2156 2176 2.029964 GTTCTGCACGAACCGGGA 59.970 61.111 6.32 0.00 45.00 5.14
2157 2177 1.375523 GTTCTGCACGAACCGGGAT 60.376 57.895 6.32 0.00 45.00 3.85
2158 2178 1.079405 TTCTGCACGAACCGGGATC 60.079 57.895 6.32 2.37 28.17 3.36
2159 2179 2.511600 CTGCACGAACCGGGATCC 60.512 66.667 6.32 1.92 28.17 3.36
2160 2180 3.309436 CTGCACGAACCGGGATCCA 62.309 63.158 15.23 0.00 28.17 3.41
2161 2181 2.189521 GCACGAACCGGGATCCAT 59.810 61.111 15.23 0.00 28.17 3.41
2162 2182 2.180204 GCACGAACCGGGATCCATG 61.180 63.158 15.23 6.12 28.17 3.66
2163 2183 1.523711 CACGAACCGGGATCCATGG 60.524 63.158 15.23 16.99 28.17 3.66
2164 2184 2.111043 CGAACCGGGATCCATGGG 59.889 66.667 22.37 17.69 0.00 4.00
2165 2185 2.515901 GAACCGGGATCCATGGGG 59.484 66.667 22.37 15.52 0.00 4.96
2166 2186 2.286885 AACCGGGATCCATGGGGT 60.287 61.111 22.37 16.08 34.93 4.95
2167 2187 2.624674 GAACCGGGATCCATGGGGTG 62.625 65.000 22.37 0.00 34.93 4.61
2168 2188 4.586235 CCGGGATCCATGGGGTGC 62.586 72.222 15.23 6.46 34.93 5.01
2169 2189 3.807839 CGGGATCCATGGGGTGCA 61.808 66.667 15.23 0.00 34.93 4.57
2170 2190 2.937650 GGGATCCATGGGGTGCAT 59.062 61.111 15.23 0.00 34.93 3.96
2171 2191 1.233949 GGGATCCATGGGGTGCATT 59.766 57.895 15.23 0.00 34.93 3.56
2172 2192 0.482446 GGGATCCATGGGGTGCATTA 59.518 55.000 15.23 0.00 34.93 1.90
2173 2193 1.548582 GGGATCCATGGGGTGCATTAG 60.549 57.143 15.23 0.00 34.93 1.73
2174 2194 1.145738 GGATCCATGGGGTGCATTAGT 59.854 52.381 13.02 0.00 34.93 2.24
2175 2195 2.508526 GATCCATGGGGTGCATTAGTC 58.491 52.381 13.02 0.00 34.93 2.59
2176 2196 0.550914 TCCATGGGGTGCATTAGTCC 59.449 55.000 13.02 0.00 34.93 3.85
2177 2197 0.468029 CCATGGGGTGCATTAGTCCC 60.468 60.000 2.85 0.54 40.41 4.46
2178 2198 0.819259 CATGGGGTGCATTAGTCCCG 60.819 60.000 3.40 0.00 42.20 5.14
2179 2199 1.994885 ATGGGGTGCATTAGTCCCGG 61.995 60.000 0.00 0.00 42.20 5.73
2180 2200 2.676265 GGGGTGCATTAGTCCCGGT 61.676 63.158 0.00 0.00 41.92 5.28
2181 2201 1.301954 GGGTGCATTAGTCCCGGTT 59.698 57.895 0.00 0.00 0.00 4.44
2182 2202 0.746923 GGGTGCATTAGTCCCGGTTC 60.747 60.000 0.00 0.00 0.00 3.62
2183 2203 0.035820 GGTGCATTAGTCCCGGTTCA 60.036 55.000 0.00 0.00 0.00 3.18
2184 2204 1.408266 GGTGCATTAGTCCCGGTTCAT 60.408 52.381 0.00 0.00 0.00 2.57
2185 2205 1.670811 GTGCATTAGTCCCGGTTCATG 59.329 52.381 0.00 0.00 0.00 3.07
2186 2206 1.557371 TGCATTAGTCCCGGTTCATGA 59.443 47.619 0.00 0.00 0.00 3.07
2187 2207 2.213499 GCATTAGTCCCGGTTCATGAG 58.787 52.381 0.00 0.00 0.00 2.90
2188 2208 2.213499 CATTAGTCCCGGTTCATGAGC 58.787 52.381 0.00 0.04 0.00 4.26
2189 2209 0.539986 TTAGTCCCGGTTCATGAGCC 59.460 55.000 18.11 18.11 0.00 4.70
2190 2210 1.335132 TAGTCCCGGTTCATGAGCCC 61.335 60.000 21.54 12.43 0.00 5.19
2191 2211 2.609299 TCCCGGTTCATGAGCCCA 60.609 61.111 21.54 4.39 0.00 5.36
2192 2212 2.124570 CCCGGTTCATGAGCCCAG 60.125 66.667 21.54 13.50 0.00 4.45
2193 2213 2.124570 CCGGTTCATGAGCCCAGG 60.125 66.667 21.54 14.43 0.00 4.45
2194 2214 2.124570 CGGTTCATGAGCCCAGGG 60.125 66.667 21.54 0.00 0.00 4.45
2195 2215 2.276740 GGTTCATGAGCCCAGGGG 59.723 66.667 17.35 3.48 38.57 4.79
2224 2244 2.438434 CCTCGTGGGCATTGGTCC 60.438 66.667 0.00 0.00 40.08 4.46
2225 2245 2.438434 CTCGTGGGCATTGGTCCC 60.438 66.667 0.00 0.00 44.17 4.46
2231 2251 1.815866 GGGCATTGGTCCCAATTCG 59.184 57.895 8.84 0.92 43.32 3.34
2232 2252 0.970427 GGGCATTGGTCCCAATTCGT 60.970 55.000 8.84 0.00 43.32 3.85
2233 2253 0.894835 GGCATTGGTCCCAATTCGTT 59.105 50.000 8.84 0.00 43.32 3.85
2234 2254 1.275010 GGCATTGGTCCCAATTCGTTT 59.725 47.619 8.84 0.00 43.32 3.60
2235 2255 2.606108 GCATTGGTCCCAATTCGTTTC 58.394 47.619 8.84 0.00 43.32 2.78
2236 2256 2.862512 CATTGGTCCCAATTCGTTTCG 58.137 47.619 8.84 0.00 43.32 3.46
2237 2257 2.257691 TTGGTCCCAATTCGTTTCGA 57.742 45.000 0.00 0.00 0.00 3.71
2238 2258 1.515081 TGGTCCCAATTCGTTTCGAC 58.485 50.000 0.00 0.00 34.89 4.20
2239 2259 0.800631 GGTCCCAATTCGTTTCGACC 59.199 55.000 0.00 0.00 34.89 4.79
2240 2260 0.800631 GTCCCAATTCGTTTCGACCC 59.199 55.000 0.00 0.00 34.89 4.46
2241 2261 0.397187 TCCCAATTCGTTTCGACCCA 59.603 50.000 0.00 0.00 34.89 4.51
2242 2262 1.003812 TCCCAATTCGTTTCGACCCAT 59.996 47.619 0.00 0.00 34.89 4.00
2243 2263 1.816224 CCCAATTCGTTTCGACCCATT 59.184 47.619 0.00 0.00 34.89 3.16
2244 2264 2.230266 CCCAATTCGTTTCGACCCATTT 59.770 45.455 0.00 0.00 34.89 2.32
2245 2265 3.241701 CCAATTCGTTTCGACCCATTTG 58.758 45.455 0.00 0.00 34.89 2.32
2246 2266 3.305064 CCAATTCGTTTCGACCCATTTGT 60.305 43.478 0.00 0.00 34.89 2.83
2247 2267 3.824414 ATTCGTTTCGACCCATTTGTC 57.176 42.857 0.00 0.00 34.89 3.18
2248 2268 1.515081 TCGTTTCGACCCATTTGTCC 58.485 50.000 0.00 0.00 31.35 4.02
2249 2269 0.519961 CGTTTCGACCCATTTGTCCC 59.480 55.000 0.00 0.00 31.35 4.46
2250 2270 0.519961 GTTTCGACCCATTTGTCCCG 59.480 55.000 0.00 0.00 31.35 5.14
2251 2271 0.606944 TTTCGACCCATTTGTCCCGG 60.607 55.000 0.00 0.00 31.35 5.73
2252 2272 1.770749 TTCGACCCATTTGTCCCGGT 61.771 55.000 0.00 0.00 31.35 5.28
2253 2273 1.302993 CGACCCATTTGTCCCGGTT 60.303 57.895 0.00 0.00 31.35 4.44
2254 2274 1.303091 CGACCCATTTGTCCCGGTTC 61.303 60.000 0.00 0.00 31.35 3.62
2255 2275 0.037734 GACCCATTTGTCCCGGTTCT 59.962 55.000 0.00 0.00 0.00 3.01
2256 2276 1.279846 GACCCATTTGTCCCGGTTCTA 59.720 52.381 0.00 0.00 0.00 2.10
2257 2277 1.280998 ACCCATTTGTCCCGGTTCTAG 59.719 52.381 0.00 0.00 0.00 2.43
2258 2278 1.408266 CCCATTTGTCCCGGTTCTAGG 60.408 57.143 0.00 0.00 0.00 3.02
2259 2279 1.379527 CATTTGTCCCGGTTCTAGGC 58.620 55.000 0.00 0.00 0.00 3.93
2260 2280 0.988832 ATTTGTCCCGGTTCTAGGCA 59.011 50.000 0.00 0.00 0.00 4.75
2261 2281 0.035739 TTTGTCCCGGTTCTAGGCAC 59.964 55.000 0.00 0.00 0.00 5.01
2262 2282 2.162338 TTGTCCCGGTTCTAGGCACG 62.162 60.000 0.00 0.00 0.00 5.34
2263 2283 2.036098 TCCCGGTTCTAGGCACGA 59.964 61.111 0.00 0.00 0.00 4.35
2264 2284 1.607178 TCCCGGTTCTAGGCACGAA 60.607 57.895 0.00 0.00 0.00 3.85
2265 2285 1.447314 CCCGGTTCTAGGCACGAAC 60.447 63.158 0.00 9.57 39.92 3.95
2266 2286 1.804326 CCGGTTCTAGGCACGAACG 60.804 63.158 11.18 0.00 41.19 3.95
2267 2287 1.804326 CGGTTCTAGGCACGAACGG 60.804 63.158 11.18 10.78 41.19 4.44
2268 2288 1.447314 GGTTCTAGGCACGAACGGG 60.447 63.158 11.18 0.00 41.19 5.28
2269 2289 1.447314 GTTCTAGGCACGAACGGGG 60.447 63.158 0.00 0.00 32.43 5.73
2270 2290 1.607178 TTCTAGGCACGAACGGGGA 60.607 57.895 0.00 0.00 0.00 4.81
2271 2291 1.880819 TTCTAGGCACGAACGGGGAC 61.881 60.000 0.00 0.00 0.00 4.46
2286 2306 4.645809 GACCAATGGGCCTCACTC 57.354 61.111 4.53 0.00 37.90 3.51
2287 2307 1.077429 GACCAATGGGCCTCACTCC 60.077 63.158 4.53 0.00 37.90 3.85
2288 2308 1.542375 ACCAATGGGCCTCACTCCT 60.542 57.895 4.53 0.00 37.90 3.69
2289 2309 1.077212 CCAATGGGCCTCACTCCTG 60.077 63.158 4.53 0.00 0.00 3.86
2290 2310 1.077212 CAATGGGCCTCACTCCTGG 60.077 63.158 4.53 0.00 0.00 4.45
2295 2315 4.416738 GCCTCACTCCTGGCCCAC 62.417 72.222 0.00 0.00 43.11 4.61
2296 2316 2.930019 CCTCACTCCTGGCCCACA 60.930 66.667 0.00 0.00 0.00 4.17
2298 2318 3.618780 CTCACTCCTGGCCCACAGC 62.619 68.421 0.00 0.00 46.14 4.40
2307 2327 3.070576 GCCCACAGCCATTGGTCC 61.071 66.667 4.26 0.00 34.35 4.46
2308 2328 2.362889 CCCACAGCCATTGGTCCC 60.363 66.667 4.26 0.00 31.46 4.46
2309 2329 2.751436 CCACAGCCATTGGTCCCG 60.751 66.667 4.26 0.00 0.00 5.14
2310 2330 2.751436 CACAGCCATTGGTCCCGG 60.751 66.667 4.26 0.00 0.00 5.73
2311 2331 3.256960 ACAGCCATTGGTCCCGGT 61.257 61.111 0.00 0.00 0.00 5.28
2312 2332 2.035626 CAGCCATTGGTCCCGGTT 59.964 61.111 0.00 0.00 0.00 4.44
2313 2333 2.046285 CAGCCATTGGTCCCGGTTC 61.046 63.158 0.00 0.00 0.00 3.62
2314 2334 3.131478 GCCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
2315 2335 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
2316 2336 2.038269 CCATTGGTCCCGGTTCGTG 61.038 63.158 0.00 0.00 0.00 4.35
2317 2337 2.038269 CATTGGTCCCGGTTCGTGG 61.038 63.158 0.00 0.00 0.00 4.94
2318 2338 3.912745 ATTGGTCCCGGTTCGTGGC 62.913 63.158 0.00 0.00 0.00 5.01
2320 2340 4.754667 GGTCCCGGTTCGTGGCTC 62.755 72.222 0.00 0.00 0.00 4.70
2331 2351 3.998672 GTGGCTCGAACCGGGACA 61.999 66.667 6.32 0.00 46.14 4.02
2332 2352 3.691342 TGGCTCGAACCGGGACAG 61.691 66.667 6.32 0.00 42.08 3.51
2333 2353 3.379445 GGCTCGAACCGGGACAGA 61.379 66.667 6.32 0.00 34.24 3.41
2334 2354 2.654877 GCTCGAACCGGGACAGAA 59.345 61.111 6.32 0.00 0.00 3.02
2335 2355 1.446272 GCTCGAACCGGGACAGAAG 60.446 63.158 6.32 0.00 0.00 2.85
2336 2356 1.215647 CTCGAACCGGGACAGAAGG 59.784 63.158 6.32 0.00 0.00 3.46
2337 2357 2.227089 CTCGAACCGGGACAGAAGGG 62.227 65.000 6.32 0.00 0.00 3.95
2338 2358 2.669240 GAACCGGGACAGAAGGGG 59.331 66.667 6.32 0.00 0.00 4.79
2339 2359 2.933834 AACCGGGACAGAAGGGGG 60.934 66.667 6.32 0.00 0.00 5.40
2340 2360 3.494080 AACCGGGACAGAAGGGGGA 62.494 63.158 6.32 0.00 0.00 4.81
2341 2361 3.083997 CCGGGACAGAAGGGGGAG 61.084 72.222 0.00 0.00 0.00 4.30
2342 2362 3.787001 CGGGACAGAAGGGGGAGC 61.787 72.222 0.00 0.00 0.00 4.70
2343 2363 2.285743 GGGACAGAAGGGGGAGCT 60.286 66.667 0.00 0.00 0.00 4.09
2344 2364 1.925972 GGGACAGAAGGGGGAGCTT 60.926 63.158 0.00 0.00 0.00 3.74
2345 2365 1.501654 GGGACAGAAGGGGGAGCTTT 61.502 60.000 0.00 0.00 0.00 3.51
2346 2366 1.286248 GGACAGAAGGGGGAGCTTTA 58.714 55.000 0.00 0.00 0.00 1.85
2347 2367 1.210722 GGACAGAAGGGGGAGCTTTAG 59.789 57.143 0.00 0.00 0.00 1.85
2348 2368 1.909986 GACAGAAGGGGGAGCTTTAGT 59.090 52.381 0.00 0.00 0.00 2.24
2349 2369 1.909986 ACAGAAGGGGGAGCTTTAGTC 59.090 52.381 0.00 0.00 0.00 2.59
2350 2370 1.210722 CAGAAGGGGGAGCTTTAGTCC 59.789 57.143 0.00 0.00 0.00 3.85
2354 2374 3.723245 GGGAGCTTTAGTCCCGGT 58.277 61.111 0.00 0.00 44.54 5.28
2355 2375 1.988817 GGGAGCTTTAGTCCCGGTT 59.011 57.895 0.00 0.00 44.54 4.44
2356 2376 0.107800 GGGAGCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 44.54 3.62
2357 2377 0.107800 GGAGCTTTAGTCCCGGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
2358 2378 0.611714 GAGCTTTAGTCCCGGTTCCA 59.388 55.000 0.00 0.00 0.00 3.53
2359 2379 0.613777 AGCTTTAGTCCCGGTTCCAG 59.386 55.000 0.00 0.00 0.00 3.86
2360 2380 1.025113 GCTTTAGTCCCGGTTCCAGC 61.025 60.000 0.00 0.00 0.00 4.85
2361 2381 0.392595 CTTTAGTCCCGGTTCCAGCC 60.393 60.000 0.00 0.00 0.00 4.85
2362 2382 1.128809 TTTAGTCCCGGTTCCAGCCA 61.129 55.000 0.00 0.00 0.00 4.75
2363 2383 1.833787 TTAGTCCCGGTTCCAGCCAC 61.834 60.000 0.00 0.00 0.00 5.01
2366 2386 4.323477 CCCGGTTCCAGCCACGAA 62.323 66.667 0.00 0.00 0.00 3.85
2367 2387 3.047877 CCGGTTCCAGCCACGAAC 61.048 66.667 0.00 0.66 39.12 3.95
2370 2390 3.047877 GTTCCAGCCACGAACCGG 61.048 66.667 0.00 0.00 34.75 5.28
2371 2391 4.323477 TTCCAGCCACGAACCGGG 62.323 66.667 6.32 0.00 0.00 5.73
2374 2394 4.308458 CAGCCACGAACCGGGACA 62.308 66.667 6.32 0.00 28.17 4.02
2375 2395 3.552384 AGCCACGAACCGGGACAA 61.552 61.111 6.32 0.00 28.17 3.18
2376 2396 2.592287 GCCACGAACCGGGACAAA 60.592 61.111 6.32 0.00 28.17 2.83
2377 2397 1.969589 GCCACGAACCGGGACAAAT 60.970 57.895 6.32 0.00 28.17 2.32
2378 2398 1.873165 CCACGAACCGGGACAAATG 59.127 57.895 6.32 0.00 28.17 2.32
2379 2399 0.604243 CCACGAACCGGGACAAATGA 60.604 55.000 6.32 0.00 28.17 2.57
2380 2400 0.796312 CACGAACCGGGACAAATGAG 59.204 55.000 6.32 0.00 28.17 2.90
2381 2401 0.395312 ACGAACCGGGACAAATGAGT 59.605 50.000 6.32 0.00 0.00 3.41
2382 2402 1.202722 ACGAACCGGGACAAATGAGTT 60.203 47.619 6.32 0.00 0.00 3.01
2383 2403 1.196808 CGAACCGGGACAAATGAGTTG 59.803 52.381 6.32 0.00 43.43 3.16
2384 2404 0.958822 AACCGGGACAAATGAGTTGC 59.041 50.000 6.32 0.00 41.31 4.17
2385 2405 0.893727 ACCGGGACAAATGAGTTGCC 60.894 55.000 6.32 0.00 41.31 4.52
2386 2406 0.609131 CCGGGACAAATGAGTTGCCT 60.609 55.000 0.00 0.00 41.31 4.75
2387 2407 1.339631 CCGGGACAAATGAGTTGCCTA 60.340 52.381 0.00 0.00 41.31 3.93
2388 2408 2.643551 CGGGACAAATGAGTTGCCTAT 58.356 47.619 0.00 0.00 41.31 2.57
2389 2409 3.433031 CCGGGACAAATGAGTTGCCTATA 60.433 47.826 0.00 0.00 41.31 1.31
2390 2410 4.389374 CGGGACAAATGAGTTGCCTATAT 58.611 43.478 0.00 0.00 41.31 0.86
2391 2411 5.512404 CCGGGACAAATGAGTTGCCTATATA 60.512 44.000 0.00 0.00 41.31 0.86
2392 2412 6.173339 CGGGACAAATGAGTTGCCTATATAT 58.827 40.000 0.00 0.00 41.31 0.86
2393 2413 7.327975 CGGGACAAATGAGTTGCCTATATATA 58.672 38.462 0.00 0.00 41.31 0.86
2394 2414 7.277981 CGGGACAAATGAGTTGCCTATATATAC 59.722 40.741 0.00 0.00 41.31 1.47
2395 2415 7.553044 GGGACAAATGAGTTGCCTATATATACC 59.447 40.741 0.00 0.00 41.31 2.73
2396 2416 7.553044 GGACAAATGAGTTGCCTATATATACCC 59.447 40.741 0.00 0.00 41.31 3.69
2397 2417 7.402862 ACAAATGAGTTGCCTATATATACCCC 58.597 38.462 0.00 0.00 41.31 4.95
2398 2418 7.018149 ACAAATGAGTTGCCTATATATACCCCA 59.982 37.037 0.00 0.00 41.31 4.96
2399 2419 7.771506 AATGAGTTGCCTATATATACCCCAT 57.228 36.000 0.00 0.00 0.00 4.00
2400 2420 6.808321 TGAGTTGCCTATATATACCCCATC 57.192 41.667 0.00 0.00 0.00 3.51
2401 2421 5.362717 TGAGTTGCCTATATATACCCCATCG 59.637 44.000 0.00 0.00 0.00 3.84
2402 2422 4.101119 AGTTGCCTATATATACCCCATCGC 59.899 45.833 0.00 0.00 0.00 4.58
2403 2423 2.969950 TGCCTATATATACCCCATCGCC 59.030 50.000 0.00 0.00 0.00 5.54
2404 2424 2.029290 GCCTATATATACCCCATCGCCG 60.029 54.545 0.00 0.00 0.00 6.46
2405 2425 2.029290 CCTATATATACCCCATCGCCGC 60.029 54.545 0.00 0.00 0.00 6.53
2406 2426 1.491668 ATATATACCCCATCGCCGCA 58.508 50.000 0.00 0.00 0.00 5.69
2407 2427 0.821517 TATATACCCCATCGCCGCAG 59.178 55.000 0.00 0.00 0.00 5.18
2408 2428 2.521958 ATATACCCCATCGCCGCAGC 62.522 60.000 0.00 0.00 0.00 5.25
2419 2439 4.383861 CCGCAGCAGAGCACTCCA 62.384 66.667 0.00 0.00 0.00 3.86
2420 2440 3.117171 CGCAGCAGAGCACTCCAC 61.117 66.667 0.00 0.00 0.00 4.02
2421 2441 3.117171 GCAGCAGAGCACTCCACG 61.117 66.667 0.00 0.00 0.00 4.94
2422 2442 2.433838 CAGCAGAGCACTCCACGG 60.434 66.667 0.00 0.00 0.00 4.94
2423 2443 2.919856 AGCAGAGCACTCCACGGT 60.920 61.111 0.00 0.00 0.00 4.83
2424 2444 2.740055 GCAGAGCACTCCACGGTG 60.740 66.667 0.00 0.00 39.91 4.94
2430 2450 2.737180 CACTCCACGGTGCTCTGT 59.263 61.111 1.68 0.00 0.00 3.41
2431 2451 1.069765 CACTCCACGGTGCTCTGTT 59.930 57.895 1.68 0.00 0.00 3.16
2432 2452 0.532862 CACTCCACGGTGCTCTGTTT 60.533 55.000 1.68 0.00 0.00 2.83
2433 2453 0.180406 ACTCCACGGTGCTCTGTTTT 59.820 50.000 1.68 0.00 0.00 2.43
2434 2454 1.308998 CTCCACGGTGCTCTGTTTTT 58.691 50.000 1.68 0.00 0.00 1.94
2448 2468 3.669344 TTTTTGCTGGCCGGCGAG 61.669 61.111 31.85 31.85 34.52 5.03
2461 2481 4.883354 GCGAGGGGGAGGGCATTG 62.883 72.222 0.00 0.00 0.00 2.82
2462 2482 4.195334 CGAGGGGGAGGGCATTGG 62.195 72.222 0.00 0.00 0.00 3.16
2463 2483 3.825623 GAGGGGGAGGGCATTGGG 61.826 72.222 0.00 0.00 0.00 4.12
2464 2484 4.720443 AGGGGGAGGGCATTGGGT 62.720 66.667 0.00 0.00 0.00 4.51
2465 2485 3.683518 GGGGGAGGGCATTGGGTT 61.684 66.667 0.00 0.00 0.00 4.11
2466 2486 2.042944 GGGGAGGGCATTGGGTTC 60.043 66.667 0.00 0.00 0.00 3.62
2467 2487 2.626467 GGGGAGGGCATTGGGTTCT 61.626 63.158 0.00 0.00 0.00 3.01
2468 2488 1.076705 GGGAGGGCATTGGGTTCTC 60.077 63.158 0.00 0.00 0.00 2.87
2469 2489 1.575447 GGGAGGGCATTGGGTTCTCT 61.575 60.000 0.00 0.00 0.00 3.10
2470 2490 1.213296 GGAGGGCATTGGGTTCTCTA 58.787 55.000 0.00 0.00 0.00 2.43
2471 2491 1.141858 GGAGGGCATTGGGTTCTCTAG 59.858 57.143 0.00 0.00 0.00 2.43
2472 2492 0.548510 AGGGCATTGGGTTCTCTAGC 59.451 55.000 0.00 0.00 0.00 3.42
2473 2493 0.548510 GGGCATTGGGTTCTCTAGCT 59.451 55.000 0.00 0.00 0.00 3.32
2474 2494 1.475930 GGGCATTGGGTTCTCTAGCTC 60.476 57.143 0.00 0.00 0.00 4.09
2475 2495 1.210478 GGCATTGGGTTCTCTAGCTCA 59.790 52.381 0.00 0.00 0.00 4.26
2476 2496 2.284190 GCATTGGGTTCTCTAGCTCAC 58.716 52.381 0.00 0.00 0.00 3.51
2477 2497 2.911484 CATTGGGTTCTCTAGCTCACC 58.089 52.381 0.00 0.00 0.00 4.02
2478 2498 2.327325 TTGGGTTCTCTAGCTCACCT 57.673 50.000 0.00 0.00 0.00 4.00
2479 2499 1.853963 TGGGTTCTCTAGCTCACCTC 58.146 55.000 0.00 0.00 0.00 3.85
2480 2500 1.116308 GGGTTCTCTAGCTCACCTCC 58.884 60.000 0.00 0.00 0.00 4.30
2481 2501 1.342574 GGGTTCTCTAGCTCACCTCCT 60.343 57.143 0.00 0.00 0.00 3.69
2482 2502 2.091775 GGGTTCTCTAGCTCACCTCCTA 60.092 54.545 0.00 0.00 0.00 2.94
2483 2503 3.437344 GGGTTCTCTAGCTCACCTCCTAT 60.437 52.174 0.00 0.00 0.00 2.57
2484 2504 3.572255 GGTTCTCTAGCTCACCTCCTATG 59.428 52.174 0.00 0.00 0.00 2.23
2485 2505 2.870175 TCTCTAGCTCACCTCCTATGC 58.130 52.381 0.00 0.00 0.00 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 6.525629 TCATATAAAGGTCCTGCTAGCTTTC 58.474 40.000 17.23 3.93 43.95 2.62
275 277 5.221803 CCATCCTACCTTAGATGCATCTGTT 60.222 44.000 34.48 19.31 37.76 3.16
617 626 5.067936 ACGAGAGAATATGTCAGGTAAGGTG 59.932 44.000 0.00 0.00 0.00 4.00
676 685 3.718434 AGAGATATTCATCCCTGTTGGCA 59.282 43.478 0.00 0.00 0.00 4.92
727 736 8.899427 TGAAATTGAATGTATTTGGCTGAAAA 57.101 26.923 0.00 0.00 0.00 2.29
952 968 7.111247 TGCCAGGTTTATTTCCATCAAATAG 57.889 36.000 0.00 0.00 38.06 1.73
1111 1127 4.576463 GTCTTTAGCCATTGGGTCAGTATG 59.424 45.833 11.39 0.00 34.28 2.39
1115 1131 3.356529 AGTCTTTAGCCATTGGGTCAG 57.643 47.619 11.39 8.99 34.28 3.51
1124 1140 8.262601 TCTCATTTGGATATAGTCTTTAGCCA 57.737 34.615 3.45 3.45 33.48 4.75
1483 1502 1.834896 TGGGCTTTATTCAGGTCGCTA 59.165 47.619 0.00 0.00 0.00 4.26
1546 1565 2.442236 TTCGGGTCGGGTATAAGTCT 57.558 50.000 0.00 0.00 0.00 3.24
1550 1569 6.891361 TCTATCAATATTCGGGTCGGGTATAA 59.109 38.462 0.00 0.00 0.00 0.98
1595 1615 7.982919 CGGGTCGGGTATATTATCAATATTCAA 59.017 37.037 0.00 0.00 35.72 2.69
1596 1616 7.342541 TCGGGTCGGGTATATTATCAATATTCA 59.657 37.037 0.00 0.00 35.72 2.57
1597 1617 7.719483 TCGGGTCGGGTATATTATCAATATTC 58.281 38.462 0.00 0.00 35.72 1.75
1598 1618 7.664552 TCGGGTCGGGTATATTATCAATATT 57.335 36.000 0.00 0.00 35.72 1.28
1599 1619 7.664552 TTCGGGTCGGGTATATTATCAATAT 57.335 36.000 0.00 0.00 37.76 1.28
1600 1620 7.664552 ATTCGGGTCGGGTATATTATCAATA 57.335 36.000 0.00 0.00 0.00 1.90
1601 1621 6.555463 ATTCGGGTCGGGTATATTATCAAT 57.445 37.500 0.00 0.00 0.00 2.57
1602 1622 7.664552 ATATTCGGGTCGGGTATATTATCAA 57.335 36.000 0.00 0.00 0.00 2.57
1603 1623 7.342541 TCAATATTCGGGTCGGGTATATTATCA 59.657 37.037 0.00 0.00 0.00 2.15
1604 1624 7.719483 TCAATATTCGGGTCGGGTATATTATC 58.281 38.462 0.00 0.00 0.00 1.75
1605 1625 7.664552 TCAATATTCGGGTCGGGTATATTAT 57.335 36.000 0.00 0.00 0.00 1.28
1606 1626 7.664552 ATCAATATTCGGGTCGGGTATATTA 57.335 36.000 0.00 0.00 0.00 0.98
1607 1627 6.555463 ATCAATATTCGGGTCGGGTATATT 57.445 37.500 0.00 0.00 0.00 1.28
1608 1628 7.064866 TCTATCAATATTCGGGTCGGGTATAT 58.935 38.462 0.00 0.00 0.00 0.86
1609 1629 6.425735 TCTATCAATATTCGGGTCGGGTATA 58.574 40.000 0.00 0.00 0.00 1.47
1610 1630 5.266788 TCTATCAATATTCGGGTCGGGTAT 58.733 41.667 0.00 0.00 0.00 2.73
1611 1631 4.665451 TCTATCAATATTCGGGTCGGGTA 58.335 43.478 0.00 0.00 0.00 3.69
1612 1632 3.503365 TCTATCAATATTCGGGTCGGGT 58.497 45.455 0.00 0.00 0.00 5.28
1613 1633 4.530710 TTCTATCAATATTCGGGTCGGG 57.469 45.455 0.00 0.00 0.00 5.14
1614 1634 6.092259 GGAATTTCTATCAATATTCGGGTCGG 59.908 42.308 0.00 0.00 0.00 4.79
1615 1635 6.649141 TGGAATTTCTATCAATATTCGGGTCG 59.351 38.462 0.00 0.00 0.00 4.79
1616 1636 7.979444 TGGAATTTCTATCAATATTCGGGTC 57.021 36.000 0.00 0.00 0.00 4.46
1617 1637 8.217799 TCTTGGAATTTCTATCAATATTCGGGT 58.782 33.333 0.00 0.00 0.00 5.28
1618 1638 8.621532 TCTTGGAATTTCTATCAATATTCGGG 57.378 34.615 0.00 0.00 0.00 5.14
1667 1687 9.574577 TTCCCTACCCATATGATTGATAATACT 57.425 33.333 3.65 0.00 0.00 2.12
1711 1731 8.558700 CAAGGCTGCTTAAATTTTTAACATTGT 58.441 29.630 0.00 0.00 0.00 2.71
1719 1739 3.814842 GTGCCAAGGCTGCTTAAATTTTT 59.185 39.130 12.96 0.00 42.51 1.94
1819 1839 5.904941 TGTGTACCAGTTTTTACTCTTCGA 58.095 37.500 0.00 0.00 0.00 3.71
1827 1847 3.136809 TGGCCTCTGTGTACCAGTTTTTA 59.863 43.478 3.32 0.00 42.19 1.52
1831 1851 0.687354 CTGGCCTCTGTGTACCAGTT 59.313 55.000 3.32 0.00 43.86 3.16
1854 1874 3.938963 GGCATTGTCTCTCGGTGAATAAA 59.061 43.478 0.00 0.00 0.00 1.40
2021 2041 0.457853 CACACGGTAGTATGCACGCT 60.458 55.000 0.00 0.00 0.00 5.07
2042 2062 3.885901 GGGAGCCATCCTTCACTTATTTC 59.114 47.826 0.00 0.00 45.85 2.17
2088 2108 4.040095 ACGAAAGCCCTGTTTTCTACTAGT 59.960 41.667 0.00 0.00 32.09 2.57
2089 2109 4.566987 ACGAAAGCCCTGTTTTCTACTAG 58.433 43.478 0.00 0.00 32.09 2.57
2090 2110 4.612264 ACGAAAGCCCTGTTTTCTACTA 57.388 40.909 0.00 0.00 32.09 1.82
2091 2111 3.487120 ACGAAAGCCCTGTTTTCTACT 57.513 42.857 0.00 0.00 32.09 2.57
2092 2112 3.363673 CGAACGAAAGCCCTGTTTTCTAC 60.364 47.826 0.00 0.00 32.09 2.59
2093 2113 2.803956 CGAACGAAAGCCCTGTTTTCTA 59.196 45.455 0.00 0.00 32.09 2.10
2094 2114 1.602377 CGAACGAAAGCCCTGTTTTCT 59.398 47.619 0.00 0.00 32.09 2.52
2095 2115 1.334689 CCGAACGAAAGCCCTGTTTTC 60.335 52.381 0.00 0.00 31.18 2.29
2096 2116 0.666374 CCGAACGAAAGCCCTGTTTT 59.334 50.000 0.00 0.00 0.00 2.43
2097 2117 1.170290 CCCGAACGAAAGCCCTGTTT 61.170 55.000 0.00 0.00 0.00 2.83
2098 2118 1.599797 CCCGAACGAAAGCCCTGTT 60.600 57.895 0.00 0.00 0.00 3.16
2099 2119 2.032071 CCCGAACGAAAGCCCTGT 59.968 61.111 0.00 0.00 0.00 4.00
2100 2120 3.431725 GCCCGAACGAAAGCCCTG 61.432 66.667 0.00 0.00 0.00 4.45
2101 2121 4.717313 GGCCCGAACGAAAGCCCT 62.717 66.667 0.00 0.00 39.60 5.19
2103 2123 3.431725 CAGGCCCGAACGAAAGCC 61.432 66.667 0.00 12.37 46.13 4.35
2104 2124 3.431725 CCAGGCCCGAACGAAAGC 61.432 66.667 0.00 0.00 0.00 3.51
2105 2125 3.431725 GCCAGGCCCGAACGAAAG 61.432 66.667 0.00 0.00 0.00 2.62
2117 2137 2.284112 ACAAATGGGCTGGCCAGG 60.284 61.111 33.46 20.45 37.98 4.45
2118 2138 2.353610 GGACAAATGGGCTGGCCAG 61.354 63.158 29.34 29.34 42.14 4.85
2119 2139 2.283821 GGACAAATGGGCTGGCCA 60.284 61.111 26.08 26.08 42.14 5.36
2120 2140 3.076916 GGGACAAATGGGCTGGCC 61.077 66.667 14.23 14.23 41.79 5.36
2121 2141 3.451894 CGGGACAAATGGGCTGGC 61.452 66.667 0.00 0.00 0.00 4.85
2122 2142 2.755469 CCGGGACAAATGGGCTGG 60.755 66.667 0.00 0.00 0.00 4.85
2123 2143 1.595093 GAACCGGGACAAATGGGCTG 61.595 60.000 6.32 0.00 0.00 4.85
2124 2144 1.304134 GAACCGGGACAAATGGGCT 60.304 57.895 6.32 0.00 0.00 5.19
2125 2145 1.304134 AGAACCGGGACAAATGGGC 60.304 57.895 6.32 0.00 0.00 5.36
2126 2146 1.595093 GCAGAACCGGGACAAATGGG 61.595 60.000 6.32 0.00 0.00 4.00
2127 2147 0.893270 TGCAGAACCGGGACAAATGG 60.893 55.000 6.32 0.00 0.00 3.16
2128 2148 0.240945 GTGCAGAACCGGGACAAATG 59.759 55.000 6.32 0.00 0.00 2.32
2129 2149 1.234615 CGTGCAGAACCGGGACAAAT 61.235 55.000 6.32 0.00 0.00 2.32
2130 2150 1.890041 CGTGCAGAACCGGGACAAA 60.890 57.895 6.32 0.00 0.00 2.83
2131 2151 2.280524 CGTGCAGAACCGGGACAA 60.281 61.111 6.32 0.00 0.00 3.18
2132 2152 2.798364 TTCGTGCAGAACCGGGACA 61.798 57.895 6.32 0.00 33.14 4.02
2133 2153 2.029964 TTCGTGCAGAACCGGGAC 59.970 61.111 6.32 0.00 33.14 4.46
2140 2160 1.079405 GATCCCGGTTCGTGCAGAA 60.079 57.895 0.00 0.00 36.31 3.02
2141 2161 2.577059 GATCCCGGTTCGTGCAGA 59.423 61.111 0.00 0.00 0.00 4.26
2142 2162 2.511600 GGATCCCGGTTCGTGCAG 60.512 66.667 0.00 0.00 0.00 4.41
2143 2163 2.665089 ATGGATCCCGGTTCGTGCA 61.665 57.895 9.90 0.00 0.00 4.57
2144 2164 2.180204 CATGGATCCCGGTTCGTGC 61.180 63.158 9.90 0.00 0.00 5.34
2145 2165 1.523711 CCATGGATCCCGGTTCGTG 60.524 63.158 5.56 0.00 0.00 4.35
2146 2166 2.742116 CCCATGGATCCCGGTTCGT 61.742 63.158 15.22 0.00 0.00 3.85
2147 2167 2.111043 CCCATGGATCCCGGTTCG 59.889 66.667 15.22 0.00 0.00 3.95
2148 2168 2.383601 ACCCCATGGATCCCGGTTC 61.384 63.158 15.22 0.00 34.81 3.62
2149 2169 2.286885 ACCCCATGGATCCCGGTT 60.287 61.111 15.22 0.00 34.81 4.44
2150 2170 3.096495 CACCCCATGGATCCCGGT 61.096 66.667 15.22 8.75 34.81 5.28
2151 2171 4.586235 GCACCCCATGGATCCCGG 62.586 72.222 15.22 9.89 34.81 5.73
2152 2172 2.645394 AATGCACCCCATGGATCCCG 62.645 60.000 15.22 0.00 38.67 5.14
2153 2173 0.482446 TAATGCACCCCATGGATCCC 59.518 55.000 15.22 0.00 38.67 3.85
2154 2174 1.145738 ACTAATGCACCCCATGGATCC 59.854 52.381 15.22 4.20 38.67 3.36
2155 2175 2.508526 GACTAATGCACCCCATGGATC 58.491 52.381 15.22 0.00 38.67 3.36
2156 2176 1.145738 GGACTAATGCACCCCATGGAT 59.854 52.381 15.22 0.00 42.02 3.41
2157 2177 0.550914 GGACTAATGCACCCCATGGA 59.449 55.000 15.22 0.00 33.49 3.41
2158 2178 0.468029 GGGACTAATGCACCCCATGG 60.468 60.000 4.14 4.14 38.69 3.66
2159 2179 0.819259 CGGGACTAATGCACCCCATG 60.819 60.000 3.84 0.00 40.43 3.66
2160 2180 1.531748 CGGGACTAATGCACCCCAT 59.468 57.895 3.84 0.00 40.43 4.00
2161 2181 2.675242 CCGGGACTAATGCACCCCA 61.675 63.158 3.84 0.00 40.43 4.96
2162 2182 2.192175 CCGGGACTAATGCACCCC 59.808 66.667 3.84 2.39 40.43 4.95
2163 2183 0.746923 GAACCGGGACTAATGCACCC 60.747 60.000 6.32 0.00 40.17 4.61
2164 2184 0.035820 TGAACCGGGACTAATGCACC 60.036 55.000 6.32 0.00 0.00 5.01
2165 2185 1.670811 CATGAACCGGGACTAATGCAC 59.329 52.381 6.32 0.00 0.00 4.57
2166 2186 1.557371 TCATGAACCGGGACTAATGCA 59.443 47.619 6.32 0.00 0.00 3.96
2167 2187 2.213499 CTCATGAACCGGGACTAATGC 58.787 52.381 6.32 0.00 0.00 3.56
2168 2188 2.213499 GCTCATGAACCGGGACTAATG 58.787 52.381 6.32 2.35 0.00 1.90
2169 2189 1.141053 GGCTCATGAACCGGGACTAAT 59.859 52.381 6.32 0.00 0.00 1.73
2170 2190 0.539986 GGCTCATGAACCGGGACTAA 59.460 55.000 6.32 0.00 0.00 2.24
2171 2191 1.335132 GGGCTCATGAACCGGGACTA 61.335 60.000 6.32 0.00 0.00 2.59
2172 2192 2.670148 GGGCTCATGAACCGGGACT 61.670 63.158 6.32 0.00 0.00 3.85
2173 2193 2.124695 GGGCTCATGAACCGGGAC 60.125 66.667 6.32 0.00 0.00 4.46
2174 2194 2.609299 TGGGCTCATGAACCGGGA 60.609 61.111 6.32 0.00 0.00 5.14
2175 2195 2.124570 CTGGGCTCATGAACCGGG 60.125 66.667 6.32 0.00 0.00 5.73
2176 2196 2.124570 CCTGGGCTCATGAACCGG 60.125 66.667 15.05 15.05 0.00 5.28
2177 2197 2.124570 CCCTGGGCTCATGAACCG 60.125 66.667 9.03 5.35 0.00 4.44
2178 2198 2.276740 CCCCTGGGCTCATGAACC 59.723 66.667 7.39 6.60 0.00 3.62
2179 2199 2.276740 CCCCCTGGGCTCATGAAC 59.723 66.667 7.39 0.00 35.35 3.18
2207 2227 2.438434 GGACCAATGCCCACGAGG 60.438 66.667 0.00 0.00 39.47 4.63
2208 2228 2.438434 GGGACCAATGCCCACGAG 60.438 66.667 0.00 0.00 45.31 4.18
2213 2233 0.970427 ACGAATTGGGACCAATGCCC 60.970 55.000 16.72 8.76 44.86 5.36
2214 2234 0.894835 AACGAATTGGGACCAATGCC 59.105 50.000 16.72 10.92 44.86 4.40
2215 2235 2.606108 GAAACGAATTGGGACCAATGC 58.394 47.619 16.72 13.98 44.86 3.56
2216 2236 2.486203 TCGAAACGAATTGGGACCAATG 59.514 45.455 16.72 8.34 44.86 2.82
2218 2238 1.874872 GTCGAAACGAATTGGGACCAA 59.125 47.619 6.20 6.20 37.72 3.67
2219 2239 1.515081 GTCGAAACGAATTGGGACCA 58.485 50.000 0.00 0.00 37.72 4.02
2220 2240 0.800631 GGTCGAAACGAATTGGGACC 59.199 55.000 0.00 0.00 37.72 4.46
2221 2241 0.800631 GGGTCGAAACGAATTGGGAC 59.199 55.000 0.00 0.00 37.72 4.46
2222 2242 0.397187 TGGGTCGAAACGAATTGGGA 59.603 50.000 0.00 0.00 37.72 4.37
2223 2243 1.459450 ATGGGTCGAAACGAATTGGG 58.541 50.000 0.00 0.00 37.72 4.12
2224 2244 3.241701 CAAATGGGTCGAAACGAATTGG 58.758 45.455 0.00 0.00 37.72 3.16
2225 2245 3.896122 ACAAATGGGTCGAAACGAATTG 58.104 40.909 0.00 0.00 37.72 2.32
2226 2246 3.057806 GGACAAATGGGTCGAAACGAATT 60.058 43.478 0.00 0.00 37.72 2.17
2227 2247 2.486592 GGACAAATGGGTCGAAACGAAT 59.513 45.455 0.00 0.00 37.72 3.34
2228 2248 1.874872 GGACAAATGGGTCGAAACGAA 59.125 47.619 0.00 0.00 37.72 3.85
2229 2249 1.515081 GGACAAATGGGTCGAAACGA 58.485 50.000 0.00 0.00 38.70 3.85
2230 2250 0.519961 GGGACAAATGGGTCGAAACG 59.480 55.000 0.00 0.00 38.70 3.60
2231 2251 0.519961 CGGGACAAATGGGTCGAAAC 59.480 55.000 0.00 0.00 38.70 2.78
2232 2252 0.606944 CCGGGACAAATGGGTCGAAA 60.607 55.000 0.00 0.00 38.70 3.46
2233 2253 1.003112 CCGGGACAAATGGGTCGAA 60.003 57.895 0.00 0.00 38.70 3.71
2234 2254 1.770749 AACCGGGACAAATGGGTCGA 61.771 55.000 6.32 0.00 38.70 4.20
2235 2255 1.302993 AACCGGGACAAATGGGTCG 60.303 57.895 6.32 0.00 38.70 4.79
2236 2256 0.037734 AGAACCGGGACAAATGGGTC 59.962 55.000 6.32 0.00 39.88 4.46
2237 2257 1.280998 CTAGAACCGGGACAAATGGGT 59.719 52.381 6.32 0.00 0.00 4.51
2238 2258 1.408266 CCTAGAACCGGGACAAATGGG 60.408 57.143 6.32 0.00 0.00 4.00
2239 2259 2.017113 GCCTAGAACCGGGACAAATGG 61.017 57.143 6.32 0.00 0.00 3.16
2240 2260 1.339631 TGCCTAGAACCGGGACAAATG 60.340 52.381 6.32 0.00 0.00 2.32
2241 2261 0.988832 TGCCTAGAACCGGGACAAAT 59.011 50.000 6.32 0.00 0.00 2.32
2242 2262 0.035739 GTGCCTAGAACCGGGACAAA 59.964 55.000 6.32 0.00 41.87 2.83
2243 2263 1.675219 GTGCCTAGAACCGGGACAA 59.325 57.895 6.32 0.00 41.87 3.18
2244 2264 2.642254 CGTGCCTAGAACCGGGACA 61.642 63.158 6.32 0.00 42.32 4.02
2245 2265 1.880819 TTCGTGCCTAGAACCGGGAC 61.881 60.000 6.32 0.00 39.24 4.46
2246 2266 1.607178 TTCGTGCCTAGAACCGGGA 60.607 57.895 6.32 0.00 0.00 5.14
2247 2267 1.447314 GTTCGTGCCTAGAACCGGG 60.447 63.158 6.32 0.00 41.38 5.73
2248 2268 1.804326 CGTTCGTGCCTAGAACCGG 60.804 63.158 0.00 0.00 43.55 5.28
2249 2269 1.804326 CCGTTCGTGCCTAGAACCG 60.804 63.158 9.46 5.99 43.55 4.44
2250 2270 1.447314 CCCGTTCGTGCCTAGAACC 60.447 63.158 9.46 0.00 43.55 3.62
2251 2271 1.447314 CCCCGTTCGTGCCTAGAAC 60.447 63.158 0.00 6.12 43.16 3.01
2252 2272 1.607178 TCCCCGTTCGTGCCTAGAA 60.607 57.895 0.00 0.00 0.00 2.10
2253 2273 2.036098 TCCCCGTTCGTGCCTAGA 59.964 61.111 0.00 0.00 0.00 2.43
2254 2274 2.183555 GTCCCCGTTCGTGCCTAG 59.816 66.667 0.00 0.00 0.00 3.02
2255 2275 3.384532 GGTCCCCGTTCGTGCCTA 61.385 66.667 0.00 0.00 0.00 3.93
2257 2277 3.912745 ATTGGTCCCCGTTCGTGCC 62.913 63.158 0.00 0.00 0.00 5.01
2258 2278 2.359478 ATTGGTCCCCGTTCGTGC 60.359 61.111 0.00 0.00 0.00 5.34
2259 2279 2.038269 CCATTGGTCCCCGTTCGTG 61.038 63.158 0.00 0.00 0.00 4.35
2260 2280 2.349755 CCATTGGTCCCCGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
2261 2281 2.437716 CCCATTGGTCCCCGTTCG 60.438 66.667 1.20 0.00 0.00 3.95
2262 2282 2.754254 GCCCATTGGTCCCCGTTC 60.754 66.667 1.20 0.00 0.00 3.95
2263 2283 4.376170 GGCCCATTGGTCCCCGTT 62.376 66.667 1.20 0.00 0.00 4.44
2265 2285 4.506255 GAGGCCCATTGGTCCCCG 62.506 72.222 0.00 0.00 36.69 5.73
2266 2286 3.346734 TGAGGCCCATTGGTCCCC 61.347 66.667 0.00 0.00 36.69 4.81
2267 2287 2.043953 GTGAGGCCCATTGGTCCC 60.044 66.667 0.00 0.25 36.69 4.46
2268 2288 1.077429 GAGTGAGGCCCATTGGTCC 60.077 63.158 0.00 0.00 36.69 4.46
2269 2289 1.077429 GGAGTGAGGCCCATTGGTC 60.077 63.158 0.00 0.00 36.05 4.02
2270 2290 1.542375 AGGAGTGAGGCCCATTGGT 60.542 57.895 0.00 0.00 0.00 3.67
2271 2291 1.077212 CAGGAGTGAGGCCCATTGG 60.077 63.158 0.00 0.00 0.00 3.16
2272 2292 1.077212 CCAGGAGTGAGGCCCATTG 60.077 63.158 0.00 0.00 0.00 2.82
2273 2293 2.988839 GCCAGGAGTGAGGCCCATT 61.989 63.158 0.00 0.00 45.18 3.16
2274 2294 3.415087 GCCAGGAGTGAGGCCCAT 61.415 66.667 0.00 0.00 45.18 4.00
2279 2299 2.930019 TGTGGGCCAGGAGTGAGG 60.930 66.667 6.40 0.00 0.00 3.86
2280 2300 2.667418 CTGTGGGCCAGGAGTGAG 59.333 66.667 6.40 0.00 37.54 3.51
2281 2301 3.640407 GCTGTGGGCCAGGAGTGA 61.640 66.667 6.40 0.00 41.81 3.41
2290 2310 3.070576 GGACCAATGGCTGTGGGC 61.071 66.667 0.00 7.97 44.26 5.36
2291 2311 2.362889 GGGACCAATGGCTGTGGG 60.363 66.667 0.00 0.00 40.75 4.61
2292 2312 2.751436 CGGGACCAATGGCTGTGG 60.751 66.667 0.00 5.60 42.28 4.17
2293 2313 2.751436 CCGGGACCAATGGCTGTG 60.751 66.667 0.00 0.00 0.00 3.66
2294 2314 2.764637 GAACCGGGACCAATGGCTGT 62.765 60.000 6.32 0.00 0.00 4.40
2295 2315 2.035626 AACCGGGACCAATGGCTG 59.964 61.111 6.32 0.00 0.00 4.85
2296 2316 2.355115 GAACCGGGACCAATGGCT 59.645 61.111 6.32 0.00 0.00 4.75
2297 2317 3.131478 CGAACCGGGACCAATGGC 61.131 66.667 6.32 0.00 0.00 4.40
2298 2318 2.038269 CACGAACCGGGACCAATGG 61.038 63.158 6.32 0.00 28.17 3.16
2299 2319 2.038269 CCACGAACCGGGACCAATG 61.038 63.158 6.32 0.00 28.17 2.82
2300 2320 2.349755 CCACGAACCGGGACCAAT 59.650 61.111 6.32 0.00 28.17 3.16
2301 2321 4.629523 GCCACGAACCGGGACCAA 62.630 66.667 6.32 0.00 28.17 3.67
2303 2323 4.754667 GAGCCACGAACCGGGACC 62.755 72.222 6.32 0.00 28.17 4.46
2314 2334 3.934391 CTGTCCCGGTTCGAGCCAC 62.934 68.421 19.03 9.54 0.00 5.01
2315 2335 3.691342 CTGTCCCGGTTCGAGCCA 61.691 66.667 19.03 0.00 0.00 4.75
2316 2336 2.837371 CTTCTGTCCCGGTTCGAGCC 62.837 65.000 8.48 8.48 0.00 4.70
2317 2337 1.446272 CTTCTGTCCCGGTTCGAGC 60.446 63.158 0.00 0.00 0.00 5.03
2318 2338 1.215647 CCTTCTGTCCCGGTTCGAG 59.784 63.158 0.00 0.00 0.00 4.04
2319 2339 2.280552 CCCTTCTGTCCCGGTTCGA 61.281 63.158 0.00 0.00 0.00 3.71
2320 2340 2.264794 CCCTTCTGTCCCGGTTCG 59.735 66.667 0.00 0.00 0.00 3.95
2321 2341 2.669240 CCCCTTCTGTCCCGGTTC 59.331 66.667 0.00 0.00 0.00 3.62
2322 2342 2.933834 CCCCCTTCTGTCCCGGTT 60.934 66.667 0.00 0.00 0.00 4.44
2323 2343 3.925914 CTCCCCCTTCTGTCCCGGT 62.926 68.421 0.00 0.00 0.00 5.28
2324 2344 3.083997 CTCCCCCTTCTGTCCCGG 61.084 72.222 0.00 0.00 0.00 5.73
2325 2345 3.787001 GCTCCCCCTTCTGTCCCG 61.787 72.222 0.00 0.00 0.00 5.14
2326 2346 1.501654 AAAGCTCCCCCTTCTGTCCC 61.502 60.000 0.00 0.00 0.00 4.46
2327 2347 1.210722 CTAAAGCTCCCCCTTCTGTCC 59.789 57.143 0.00 0.00 0.00 4.02
2328 2348 1.909986 ACTAAAGCTCCCCCTTCTGTC 59.090 52.381 0.00 0.00 0.00 3.51
2329 2349 1.909986 GACTAAAGCTCCCCCTTCTGT 59.090 52.381 0.00 0.00 0.00 3.41
2330 2350 1.210722 GGACTAAAGCTCCCCCTTCTG 59.789 57.143 0.00 0.00 0.00 3.02
2331 2351 1.585895 GGACTAAAGCTCCCCCTTCT 58.414 55.000 0.00 0.00 0.00 2.85
2332 2352 0.547075 GGGACTAAAGCTCCCCCTTC 59.453 60.000 0.00 0.00 41.70 3.46
2333 2353 1.272554 CGGGACTAAAGCTCCCCCTT 61.273 60.000 2.50 0.00 44.40 3.95
2334 2354 1.689582 CGGGACTAAAGCTCCCCCT 60.690 63.158 2.50 0.00 44.40 4.79
2335 2355 2.743179 CCGGGACTAAAGCTCCCCC 61.743 68.421 2.50 1.31 44.40 5.40
2336 2356 1.559965 AACCGGGACTAAAGCTCCCC 61.560 60.000 6.32 0.99 44.40 4.81
2337 2357 0.107800 GAACCGGGACTAAAGCTCCC 60.108 60.000 6.32 0.00 43.86 4.30
2338 2358 0.107800 GGAACCGGGACTAAAGCTCC 60.108 60.000 6.32 0.00 0.00 4.70
2339 2359 0.611714 TGGAACCGGGACTAAAGCTC 59.388 55.000 6.32 0.00 0.00 4.09
2340 2360 0.613777 CTGGAACCGGGACTAAAGCT 59.386 55.000 6.32 0.00 0.00 3.74
2341 2361 1.025113 GCTGGAACCGGGACTAAAGC 61.025 60.000 6.32 3.17 0.00 3.51
2342 2362 0.392595 GGCTGGAACCGGGACTAAAG 60.393 60.000 6.32 0.00 0.00 1.85
2343 2363 1.128809 TGGCTGGAACCGGGACTAAA 61.129 55.000 6.32 0.00 0.00 1.85
2344 2364 1.536907 TGGCTGGAACCGGGACTAA 60.537 57.895 6.32 0.00 0.00 2.24
2345 2365 2.120940 TGGCTGGAACCGGGACTA 59.879 61.111 6.32 0.00 0.00 2.59
2346 2366 3.637273 GTGGCTGGAACCGGGACT 61.637 66.667 6.32 0.00 0.00 3.85
2349 2369 4.323477 TTCGTGGCTGGAACCGGG 62.323 66.667 6.32 0.00 0.00 5.73
2350 2370 3.047877 GTTCGTGGCTGGAACCGG 61.048 66.667 0.00 0.00 38.23 5.28
2353 2373 3.047877 CCGGTTCGTGGCTGGAAC 61.048 66.667 11.23 11.23 42.32 3.62
2354 2374 4.323477 CCCGGTTCGTGGCTGGAA 62.323 66.667 0.00 0.00 34.35 3.53
2357 2377 3.818121 TTGTCCCGGTTCGTGGCTG 62.818 63.158 0.00 0.00 0.00 4.85
2358 2378 2.406002 ATTTGTCCCGGTTCGTGGCT 62.406 55.000 0.00 0.00 0.00 4.75
2359 2379 1.969589 ATTTGTCCCGGTTCGTGGC 60.970 57.895 0.00 0.00 0.00 5.01
2360 2380 0.604243 TCATTTGTCCCGGTTCGTGG 60.604 55.000 0.00 0.00 0.00 4.94
2361 2381 0.796312 CTCATTTGTCCCGGTTCGTG 59.204 55.000 0.00 0.00 0.00 4.35
2362 2382 0.395312 ACTCATTTGTCCCGGTTCGT 59.605 50.000 0.00 0.00 0.00 3.85
2363 2383 1.196808 CAACTCATTTGTCCCGGTTCG 59.803 52.381 0.00 0.00 0.00 3.95
2364 2384 1.068541 GCAACTCATTTGTCCCGGTTC 60.069 52.381 0.00 0.00 37.54 3.62
2365 2385 0.958822 GCAACTCATTTGTCCCGGTT 59.041 50.000 0.00 0.00 37.54 4.44
2366 2386 0.893727 GGCAACTCATTTGTCCCGGT 60.894 55.000 0.00 0.00 37.54 5.28
2367 2387 1.883021 GGCAACTCATTTGTCCCGG 59.117 57.895 0.00 0.00 37.54 5.73
2380 2400 4.377897 GCGATGGGGTATATATAGGCAAC 58.622 47.826 0.00 0.00 0.00 4.17
2381 2401 3.389983 GGCGATGGGGTATATATAGGCAA 59.610 47.826 0.00 0.00 0.00 4.52
2382 2402 2.969950 GGCGATGGGGTATATATAGGCA 59.030 50.000 0.00 0.00 0.00 4.75
2383 2403 2.029290 CGGCGATGGGGTATATATAGGC 60.029 54.545 0.00 0.00 0.00 3.93
2384 2404 2.029290 GCGGCGATGGGGTATATATAGG 60.029 54.545 12.98 0.00 0.00 2.57
2385 2405 2.626266 TGCGGCGATGGGGTATATATAG 59.374 50.000 12.98 0.00 0.00 1.31
2386 2406 2.626266 CTGCGGCGATGGGGTATATATA 59.374 50.000 12.98 0.00 0.00 0.86
2387 2407 1.412710 CTGCGGCGATGGGGTATATAT 59.587 52.381 12.98 0.00 0.00 0.86
2388 2408 0.821517 CTGCGGCGATGGGGTATATA 59.178 55.000 12.98 0.00 0.00 0.86
2389 2409 1.596934 CTGCGGCGATGGGGTATAT 59.403 57.895 12.98 0.00 0.00 0.86
2390 2410 3.056458 CTGCGGCGATGGGGTATA 58.944 61.111 12.98 0.00 0.00 1.47
2391 2411 4.626081 GCTGCGGCGATGGGGTAT 62.626 66.667 12.98 0.00 0.00 2.73
2402 2422 4.383861 TGGAGTGCTCTGCTGCGG 62.384 66.667 8.78 0.95 35.36 5.69
2403 2423 3.117171 GTGGAGTGCTCTGCTGCG 61.117 66.667 8.78 0.00 35.36 5.18
2404 2424 3.117171 CGTGGAGTGCTCTGCTGC 61.117 66.667 8.78 0.00 33.13 5.25
2405 2425 2.433838 CCGTGGAGTGCTCTGCTG 60.434 66.667 8.78 1.60 33.13 4.41
2406 2426 2.919856 ACCGTGGAGTGCTCTGCT 60.920 61.111 8.78 0.00 33.13 4.24
2407 2427 2.740055 CACCGTGGAGTGCTCTGC 60.740 66.667 0.00 0.00 0.00 4.26
2413 2433 0.532862 AAACAGAGCACCGTGGAGTG 60.533 55.000 0.00 0.00 40.88 3.51
2414 2434 0.180406 AAAACAGAGCACCGTGGAGT 59.820 50.000 0.00 0.00 0.00 3.85
2415 2435 1.308998 AAAAACAGAGCACCGTGGAG 58.691 50.000 0.00 0.00 0.00 3.86
2416 2436 3.487576 AAAAACAGAGCACCGTGGA 57.512 47.368 0.00 0.00 0.00 4.02
2431 2451 3.669344 CTCGCCGGCCAGCAAAAA 61.669 61.111 23.46 0.00 0.00 1.94
2444 2464 4.883354 CAATGCCCTCCCCCTCGC 62.883 72.222 0.00 0.00 0.00 5.03
2445 2465 4.195334 CCAATGCCCTCCCCCTCG 62.195 72.222 0.00 0.00 0.00 4.63
2446 2466 3.825623 CCCAATGCCCTCCCCCTC 61.826 72.222 0.00 0.00 0.00 4.30
2447 2467 4.720443 ACCCAATGCCCTCCCCCT 62.720 66.667 0.00 0.00 0.00 4.79
2448 2468 3.679199 GAACCCAATGCCCTCCCCC 62.679 68.421 0.00 0.00 0.00 5.40
2449 2469 2.042944 GAACCCAATGCCCTCCCC 60.043 66.667 0.00 0.00 0.00 4.81
2450 2470 1.076705 GAGAACCCAATGCCCTCCC 60.077 63.158 0.00 0.00 0.00 4.30
2451 2471 1.141858 CTAGAGAACCCAATGCCCTCC 59.858 57.143 0.00 0.00 0.00 4.30
2452 2472 1.475930 GCTAGAGAACCCAATGCCCTC 60.476 57.143 0.00 0.00 0.00 4.30
2453 2473 0.548510 GCTAGAGAACCCAATGCCCT 59.451 55.000 0.00 0.00 0.00 5.19
2454 2474 0.548510 AGCTAGAGAACCCAATGCCC 59.451 55.000 0.00 0.00 0.00 5.36
2455 2475 1.210478 TGAGCTAGAGAACCCAATGCC 59.790 52.381 0.00 0.00 0.00 4.40
2456 2476 2.284190 GTGAGCTAGAGAACCCAATGC 58.716 52.381 0.00 0.00 0.00 3.56
2457 2477 2.503356 AGGTGAGCTAGAGAACCCAATG 59.497 50.000 0.00 0.00 32.85 2.82
2458 2478 2.769095 GAGGTGAGCTAGAGAACCCAAT 59.231 50.000 0.00 0.00 32.85 3.16
2459 2479 2.180276 GAGGTGAGCTAGAGAACCCAA 58.820 52.381 0.00 0.00 32.85 4.12
2460 2480 1.619977 GGAGGTGAGCTAGAGAACCCA 60.620 57.143 0.00 0.00 32.85 4.51
2461 2481 1.116308 GGAGGTGAGCTAGAGAACCC 58.884 60.000 0.00 0.00 32.85 4.11
2462 2482 2.153034 AGGAGGTGAGCTAGAGAACC 57.847 55.000 0.00 0.00 0.00 3.62
2463 2483 3.005367 GCATAGGAGGTGAGCTAGAGAAC 59.995 52.174 0.00 0.00 0.00 3.01
2464 2484 3.226777 GCATAGGAGGTGAGCTAGAGAA 58.773 50.000 0.00 0.00 0.00 2.87
2465 2485 2.870175 GCATAGGAGGTGAGCTAGAGA 58.130 52.381 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.