Multiple sequence alignment - TraesCS1D01G319300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G319300 chr1D 100.000 2309 0 0 1 2309 413417143 413414835 0.000000e+00 4265.0
1 TraesCS1D01G319300 chr1A 92.301 1195 71 12 919 2111 510373701 510372526 0.000000e+00 1677.0
2 TraesCS1D01G319300 chr1A 85.052 388 51 6 1 383 510374325 510373940 2.780000e-104 388.0
3 TraesCS1D01G319300 chr1B 92.431 1189 56 13 919 2097 557922249 557921085 0.000000e+00 1666.0
4 TraesCS1D01G319300 chr1B 95.755 212 8 1 2099 2309 557921000 557920789 7.900000e-90 340.0
5 TraesCS1D01G319300 chr4D 96.198 263 9 1 629 891 336841751 336842012 1.640000e-116 429.0
6 TraesCS1D01G319300 chr4D 91.667 264 22 0 629 892 69179559 69179822 1.300000e-97 366.0
7 TraesCS1D01G319300 chr4D 91.667 264 21 1 628 891 497251987 497251725 4.690000e-97 364.0
8 TraesCS1D01G319300 chr4D 77.901 181 27 9 111 281 25375952 25375775 1.460000e-17 100.0
9 TraesCS1D01G319300 chr3D 80.403 546 81 18 94 631 66337930 66337403 2.150000e-105 392.0
10 TraesCS1D01G319300 chr3D 93.182 264 18 0 629 892 346865213 346865476 2.780000e-104 388.0
11 TraesCS1D01G319300 chr3D 93.182 264 17 1 628 891 461592290 461592028 1.000000e-103 387.0
12 TraesCS1D01G319300 chr3D 92.803 264 19 0 628 891 554686054 554686317 1.290000e-102 383.0
13 TraesCS1D01G319300 chr3D 91.321 265 19 1 627 891 313718987 313719247 2.180000e-95 359.0
14 TraesCS1D01G319300 chr5A 92.884 267 19 0 629 895 631470293 631470027 2.780000e-104 388.0
15 TraesCS1D01G319300 chr5D 92.045 264 21 0 629 892 60522757 60522494 2.800000e-99 372.0
16 TraesCS1D01G319300 chr7D 78.095 525 79 20 101 620 42647800 42647307 1.340000e-77 300.0
17 TraesCS1D01G319300 chr2A 78.681 455 76 12 182 626 293935222 293935665 1.350000e-72 283.0
18 TraesCS1D01G319300 chr2D 77.925 453 79 11 183 626 277681496 277681056 1.760000e-66 263.0
19 TraesCS1D01G319300 chr2D 81.724 290 46 6 97 381 430508216 430508503 3.840000e-58 235.0
20 TraesCS1D01G319300 chr6B 75.097 514 88 28 98 606 203273775 203273297 1.080000e-48 204.0
21 TraesCS1D01G319300 chr6B 100.000 28 0 0 101 128 705169876 705169849 4.000000e-03 52.8
22 TraesCS1D01G319300 chr4A 77.744 328 60 11 310 631 632865564 632865244 3.030000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G319300 chr1D 413414835 413417143 2308 True 4265.0 4265 100.0000 1 2309 1 chr1D.!!$R1 2308
1 TraesCS1D01G319300 chr1A 510372526 510374325 1799 True 1032.5 1677 88.6765 1 2111 2 chr1A.!!$R1 2110
2 TraesCS1D01G319300 chr1B 557920789 557922249 1460 True 1003.0 1666 94.0930 919 2309 2 chr1B.!!$R1 1390
3 TraesCS1D01G319300 chr3D 66337403 66337930 527 True 392.0 392 80.4030 94 631 1 chr3D.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 506 0.037697 TTCGTCTATGTGTGCGCCTT 60.038 50.0 4.18 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1791 0.839946 AGTCCAGGCTCACTGTTTGT 59.16 50.0 0.0 0.0 46.06 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.678336 GGATGAGGACGGTTAAGCTTTG 59.322 50.000 3.20 0.00 0.00 2.77
57 58 5.869350 ACAAGCGTTGTGATAGATAAAAGC 58.131 37.500 3.13 0.00 43.48 3.51
89 90 3.481467 GCACGTTTAGTACATCAACTCGC 60.481 47.826 0.00 0.00 0.00 5.03
91 92 5.090757 CACGTTTAGTACATCAACTCGCTA 58.909 41.667 0.00 0.00 0.00 4.26
92 93 5.570206 CACGTTTAGTACATCAACTCGCTAA 59.430 40.000 0.00 0.00 0.00 3.09
93 94 5.570589 ACGTTTAGTACATCAACTCGCTAAC 59.429 40.000 0.00 0.00 0.00 2.34
94 95 5.570206 CGTTTAGTACATCAACTCGCTAACA 59.430 40.000 0.00 0.00 0.00 2.41
95 96 6.452090 CGTTTAGTACATCAACTCGCTAACAC 60.452 42.308 0.00 0.00 0.00 3.32
96 97 4.514781 AGTACATCAACTCGCTAACACA 57.485 40.909 0.00 0.00 0.00 3.72
97 98 5.073311 AGTACATCAACTCGCTAACACAT 57.927 39.130 0.00 0.00 0.00 3.21
135 137 1.948834 ACCCCGTAAAAAGGTCAAACG 59.051 47.619 0.00 0.00 0.00 3.60
203 205 4.753107 CCGTAAAACAGCATATCCCGTAAT 59.247 41.667 0.00 0.00 0.00 1.89
204 206 5.237779 CCGTAAAACAGCATATCCCGTAATT 59.762 40.000 0.00 0.00 0.00 1.40
205 207 6.238538 CCGTAAAACAGCATATCCCGTAATTT 60.239 38.462 0.00 0.00 0.00 1.82
206 208 7.190871 CGTAAAACAGCATATCCCGTAATTTT 58.809 34.615 0.00 0.00 0.00 1.82
207 209 7.698970 CGTAAAACAGCATATCCCGTAATTTTT 59.301 33.333 0.00 0.00 0.00 1.94
227 232 0.998928 TTTGCAGGCTCCCCTATTCA 59.001 50.000 0.00 0.00 40.33 2.57
237 242 1.936631 TCCCCTATTCAAGCCCCAATT 59.063 47.619 0.00 0.00 0.00 2.32
247 252 6.478512 TTCAAGCCCCAATTTGTTATATCC 57.521 37.500 0.00 0.00 0.00 2.59
292 297 2.421529 GGATCCTGTAAAGCCGGTCAAT 60.422 50.000 3.84 0.00 0.00 2.57
294 299 1.349688 TCCTGTAAAGCCGGTCAATGT 59.650 47.619 1.90 0.00 0.00 2.71
335 340 3.481903 CGCGCATGAGCAACGAGT 61.482 61.111 21.59 0.00 41.05 4.18
346 351 1.433879 CAACGAGTAGGCGGAGGAG 59.566 63.158 0.00 0.00 35.12 3.69
383 388 3.997064 GAGCATCGCCAGAGCACGT 62.997 63.158 0.00 0.00 39.83 4.49
391 396 4.694233 CAGAGCACGTGCCAGGCT 62.694 66.667 35.51 23.86 43.38 4.58
392 397 4.694233 AGAGCACGTGCCAGGCTG 62.694 66.667 35.51 7.75 43.38 4.85
398 403 4.790962 CGTGCCAGGCTGGAGCAT 62.791 66.667 37.07 0.00 40.96 3.79
399 404 2.827642 GTGCCAGGCTGGAGCATC 60.828 66.667 37.07 18.80 40.96 3.91
400 405 3.332385 TGCCAGGCTGGAGCATCA 61.332 61.111 37.07 21.28 40.96 3.07
413 418 2.261361 CATCACCGGAGCGTCACA 59.739 61.111 9.46 0.00 0.00 3.58
473 478 2.343758 GCAGTTCTGGCCGACTGA 59.656 61.111 27.96 9.98 44.65 3.41
475 480 0.884704 GCAGTTCTGGCCGACTGAAA 60.885 55.000 27.96 3.17 44.65 2.69
488 493 3.235195 CGACTGAAATTCGAGTTCGTCT 58.765 45.455 20.13 0.54 38.85 4.18
492 497 5.710984 ACTGAAATTCGAGTTCGTCTATGT 58.289 37.500 1.07 0.00 40.80 2.29
498 503 0.640768 GAGTTCGTCTATGTGTGCGC 59.359 55.000 0.00 0.00 0.00 6.09
500 505 0.736325 GTTCGTCTATGTGTGCGCCT 60.736 55.000 4.18 0.00 0.00 5.52
501 506 0.037697 TTCGTCTATGTGTGCGCCTT 60.038 50.000 4.18 0.00 0.00 4.35
505 510 1.136305 GTCTATGTGTGCGCCTTAGGA 59.864 52.381 4.18 0.00 0.00 2.94
516 521 1.661112 CGCCTTAGGAAAGAAGAAGCG 59.339 52.381 0.69 0.00 34.37 4.68
521 526 4.322049 CCTTAGGAAAGAAGAAGCGTGAGA 60.322 45.833 0.00 0.00 34.37 3.27
522 527 3.311486 AGGAAAGAAGAAGCGTGAGAG 57.689 47.619 0.00 0.00 0.00 3.20
523 528 2.894126 AGGAAAGAAGAAGCGTGAGAGA 59.106 45.455 0.00 0.00 0.00 3.10
584 591 4.161295 CCGCCCTTGATGCCTCGA 62.161 66.667 0.00 0.00 0.00 4.04
585 592 2.587194 CGCCCTTGATGCCTCGAG 60.587 66.667 5.13 5.13 33.25 4.04
611 618 9.197306 GGTATCATAAATTTGTTTTAGGGGAGT 57.803 33.333 0.00 0.00 33.45 3.85
621 628 8.669055 TTTGTTTTAGGGGAGTCTGTATACTA 57.331 34.615 4.17 0.00 0.00 1.82
642 649 6.510536 ACTATTTTTATACTCCCTTCGTCCG 58.489 40.000 0.00 0.00 0.00 4.79
643 650 4.806640 TTTTTATACTCCCTTCGTCCGT 57.193 40.909 0.00 0.00 0.00 4.69
644 651 3.788333 TTTATACTCCCTTCGTCCGTG 57.212 47.619 0.00 0.00 0.00 4.94
645 652 2.715749 TATACTCCCTTCGTCCGTGA 57.284 50.000 0.00 0.00 0.00 4.35
646 653 1.843368 ATACTCCCTTCGTCCGTGAA 58.157 50.000 0.00 0.00 0.00 3.18
647 654 1.843368 TACTCCCTTCGTCCGTGAAT 58.157 50.000 0.00 0.00 0.00 2.57
648 655 1.843368 ACTCCCTTCGTCCGTGAATA 58.157 50.000 0.00 0.00 0.00 1.75
649 656 2.173519 ACTCCCTTCGTCCGTGAATAA 58.826 47.619 0.00 0.00 0.00 1.40
650 657 2.165845 ACTCCCTTCGTCCGTGAATAAG 59.834 50.000 0.00 0.00 0.00 1.73
651 658 2.165845 CTCCCTTCGTCCGTGAATAAGT 59.834 50.000 0.00 0.00 0.00 2.24
652 659 2.094390 TCCCTTCGTCCGTGAATAAGTG 60.094 50.000 0.00 0.00 0.00 3.16
653 660 2.353406 CCCTTCGTCCGTGAATAAGTGT 60.353 50.000 0.00 0.00 0.00 3.55
654 661 3.119388 CCCTTCGTCCGTGAATAAGTGTA 60.119 47.826 0.00 0.00 0.00 2.90
655 662 3.855950 CCTTCGTCCGTGAATAAGTGTAC 59.144 47.826 0.00 0.00 0.00 2.90
656 663 4.380233 CCTTCGTCCGTGAATAAGTGTACT 60.380 45.833 0.00 0.00 0.00 2.73
657 664 4.771590 TCGTCCGTGAATAAGTGTACTT 57.228 40.909 2.51 2.51 39.85 2.24
658 665 4.726416 TCGTCCGTGAATAAGTGTACTTC 58.274 43.478 0.00 0.00 37.40 3.01
659 666 4.456911 TCGTCCGTGAATAAGTGTACTTCT 59.543 41.667 0.00 0.00 37.40 2.85
660 667 5.643348 TCGTCCGTGAATAAGTGTACTTCTA 59.357 40.000 0.00 0.00 37.40 2.10
661 668 6.317140 TCGTCCGTGAATAAGTGTACTTCTAT 59.683 38.462 0.00 0.00 37.40 1.98
662 669 6.632035 CGTCCGTGAATAAGTGTACTTCTATC 59.368 42.308 0.00 0.03 37.40 2.08
663 670 7.478322 GTCCGTGAATAAGTGTACTTCTATCA 58.522 38.462 0.00 2.46 37.40 2.15
664 671 8.136165 GTCCGTGAATAAGTGTACTTCTATCAT 58.864 37.037 0.00 0.00 37.40 2.45
665 672 8.692710 TCCGTGAATAAGTGTACTTCTATCATT 58.307 33.333 0.00 0.00 37.40 2.57
666 673 9.314321 CCGTGAATAAGTGTACTTCTATCATTT 57.686 33.333 0.00 0.00 37.40 2.32
674 681 9.593134 AAGTGTACTTCTATCATTTCTGCTAAG 57.407 33.333 0.00 0.00 0.00 2.18
675 682 8.754080 AGTGTACTTCTATCATTTCTGCTAAGT 58.246 33.333 0.00 0.00 0.00 2.24
676 683 9.026074 GTGTACTTCTATCATTTCTGCTAAGTC 57.974 37.037 0.00 0.00 0.00 3.01
677 684 8.749354 TGTACTTCTATCATTTCTGCTAAGTCA 58.251 33.333 0.00 0.00 0.00 3.41
678 685 9.587772 GTACTTCTATCATTTCTGCTAAGTCAA 57.412 33.333 0.00 0.00 0.00 3.18
680 687 9.160496 ACTTCTATCATTTCTGCTAAGTCAAAG 57.840 33.333 0.00 0.00 0.00 2.77
681 688 9.160496 CTTCTATCATTTCTGCTAAGTCAAAGT 57.840 33.333 0.00 0.00 0.00 2.66
682 689 9.507329 TTCTATCATTTCTGCTAAGTCAAAGTT 57.493 29.630 0.00 0.00 0.00 2.66
683 690 9.507329 TCTATCATTTCTGCTAAGTCAAAGTTT 57.493 29.630 0.00 0.00 0.00 2.66
776 783 9.545105 AAATGCATTTCAAAACAAATCTAGTGA 57.455 25.926 18.99 0.00 0.00 3.41
777 784 9.715121 AATGCATTTCAAAACAAATCTAGTGAT 57.285 25.926 5.99 0.00 33.70 3.06
779 786 9.624697 TGCATTTCAAAACAAATCTAGTGATAC 57.375 29.630 0.00 0.00 31.70 2.24
780 787 9.846248 GCATTTCAAAACAAATCTAGTGATACT 57.154 29.630 0.00 0.00 31.70 2.12
799 806 9.612620 GTGATACTAATTTAGTGCCATAAATGC 57.387 33.333 17.47 1.68 39.81 3.56
800 807 9.573166 TGATACTAATTTAGTGCCATAAATGCT 57.427 29.630 17.47 0.00 39.81 3.79
801 808 9.831737 GATACTAATTTAGTGCCATAAATGCTG 57.168 33.333 17.47 2.27 39.81 4.41
802 809 6.507023 ACTAATTTAGTGCCATAAATGCTGC 58.493 36.000 8.27 0.00 37.69 5.25
803 810 5.603170 AATTTAGTGCCATAAATGCTGCT 57.397 34.783 0.00 0.00 35.91 4.24
804 811 6.713762 AATTTAGTGCCATAAATGCTGCTA 57.286 33.333 0.00 0.00 35.91 3.49
805 812 5.499139 TTTAGTGCCATAAATGCTGCTAC 57.501 39.130 0.00 0.00 0.00 3.58
806 813 3.287867 AGTGCCATAAATGCTGCTACT 57.712 42.857 0.00 0.00 0.00 2.57
807 814 3.624777 AGTGCCATAAATGCTGCTACTT 58.375 40.909 0.00 0.00 0.00 2.24
808 815 4.019174 AGTGCCATAAATGCTGCTACTTT 58.981 39.130 0.00 1.23 0.00 2.66
809 816 4.463891 AGTGCCATAAATGCTGCTACTTTT 59.536 37.500 0.00 0.00 0.00 2.27
810 817 5.047092 AGTGCCATAAATGCTGCTACTTTTT 60.047 36.000 0.00 0.00 0.00 1.94
863 870 9.606631 ACTTTGACTTAGGATAAAAGCTAGATG 57.393 33.333 0.00 0.00 32.33 2.90
864 871 9.606631 CTTTGACTTAGGATAAAAGCTAGATGT 57.393 33.333 0.00 0.00 0.00 3.06
876 883 6.830114 AAAGCTAGATGTATACTTGTTCGC 57.170 37.500 4.17 3.67 0.00 4.70
877 884 4.537965 AGCTAGATGTATACTTGTTCGCG 58.462 43.478 0.00 0.00 0.00 5.87
878 885 3.669122 GCTAGATGTATACTTGTTCGCGG 59.331 47.826 6.13 0.00 0.00 6.46
879 886 4.556104 GCTAGATGTATACTTGTTCGCGGA 60.556 45.833 6.13 0.00 0.00 5.54
880 887 3.703420 AGATGTATACTTGTTCGCGGAC 58.297 45.455 11.62 11.62 0.00 4.79
881 888 1.898938 TGTATACTTGTTCGCGGACG 58.101 50.000 13.91 1.42 42.01 4.79
882 889 1.194495 GTATACTTGTTCGCGGACGG 58.806 55.000 13.91 10.83 40.63 4.79
883 890 1.093972 TATACTTGTTCGCGGACGGA 58.906 50.000 13.91 2.91 40.63 4.69
884 891 0.179145 ATACTTGTTCGCGGACGGAG 60.179 55.000 13.91 15.46 40.63 4.63
885 892 2.203972 TACTTGTTCGCGGACGGAGG 62.204 60.000 20.62 10.43 40.63 4.30
886 893 4.367023 TTGTTCGCGGACGGAGGG 62.367 66.667 13.91 0.00 40.63 4.30
888 895 4.493747 GTTCGCGGACGGAGGGAG 62.494 72.222 6.13 0.00 40.63 4.30
898 905 2.722201 CGGAGGGAGTAGGTGGTGC 61.722 68.421 0.00 0.00 0.00 5.01
901 908 0.984995 GAGGGAGTAGGTGGTGCTTT 59.015 55.000 0.00 0.00 0.00 3.51
902 909 2.185387 GAGGGAGTAGGTGGTGCTTTA 58.815 52.381 0.00 0.00 0.00 1.85
905 912 2.185387 GGAGTAGGTGGTGCTTTAGGA 58.815 52.381 0.00 0.00 0.00 2.94
906 913 2.772515 GGAGTAGGTGGTGCTTTAGGAT 59.227 50.000 0.00 0.00 0.00 3.24
907 914 3.181464 GGAGTAGGTGGTGCTTTAGGATC 60.181 52.174 0.00 0.00 0.00 3.36
912 919 2.012673 GTGGTGCTTTAGGATCTGCTG 58.987 52.381 0.00 0.00 0.00 4.41
916 923 2.093235 GTGCTTTAGGATCTGCTGGAGT 60.093 50.000 0.00 0.00 0.00 3.85
917 924 2.093288 TGCTTTAGGATCTGCTGGAGTG 60.093 50.000 0.00 0.00 0.00 3.51
918 925 2.169352 GCTTTAGGATCTGCTGGAGTGA 59.831 50.000 0.00 0.00 0.00 3.41
920 927 1.781786 TAGGATCTGCTGGAGTGACC 58.218 55.000 0.00 0.00 39.54 4.02
935 949 1.345415 GTGACCAAACCCCTCGTCTAA 59.655 52.381 0.00 0.00 0.00 2.10
1323 1343 3.119459 TGTTCTGAGCACGAGGAGATAAC 60.119 47.826 0.00 0.00 0.00 1.89
1373 1394 1.388065 TTGGGTGTTGCCAGGTTTCG 61.388 55.000 0.00 0.00 39.65 3.46
1375 1396 0.535553 GGGTGTTGCCAGGTTTCGTA 60.536 55.000 0.00 0.00 39.65 3.43
1379 1400 0.872388 GTTGCCAGGTTTCGTAGGTG 59.128 55.000 0.00 0.00 0.00 4.00
1393 1414 2.778299 GTAGGTGCAAAGGTGTGATCA 58.222 47.619 0.00 0.00 0.00 2.92
1398 1419 1.894466 TGCAAAGGTGTGATCATTGGG 59.106 47.619 0.00 0.00 0.00 4.12
1408 1429 4.273480 GTGTGATCATTGGGTGTATACTGC 59.727 45.833 0.00 0.00 0.00 4.40
1424 1445 5.972107 ATACTGCTGCTTGTGAATTTCTT 57.028 34.783 0.00 0.00 0.00 2.52
1455 1476 3.843027 ACTTGAGATGTGGATGAGTCCTT 59.157 43.478 0.00 0.00 45.32 3.36
1461 1482 1.625315 TGTGGATGAGTCCTTGTGGAG 59.375 52.381 0.00 0.00 45.32 3.86
1463 1484 0.543749 GGATGAGTCCTTGTGGAGGG 59.456 60.000 0.00 0.00 46.31 4.30
1493 1514 0.471591 TGGTTGGAATGCTGGGCTTT 60.472 50.000 0.00 0.00 0.00 3.51
1499 1520 1.538047 GAATGCTGGGCTTTCTGTCA 58.462 50.000 9.77 0.00 38.89 3.58
1545 1566 6.016777 CCAATTTCGGCAGCTCTTTATAAGAT 60.017 38.462 0.00 0.00 36.82 2.40
1546 1567 7.420800 CAATTTCGGCAGCTCTTTATAAGATT 58.579 34.615 0.00 0.00 36.82 2.40
1594 1619 5.371115 TGCTGTACTTTGGCTTTTGTATC 57.629 39.130 0.00 0.00 0.00 2.24
1600 1625 3.005791 ACTTTGGCTTTTGTATCCACTGC 59.994 43.478 0.00 0.00 0.00 4.40
1669 1694 8.814448 ACTAAATCTTCATAGGGATTAGGGAA 57.186 34.615 0.00 0.00 32.65 3.97
1731 1756 5.069648 ACTGGGAGATGTATGAGTGTATGTG 59.930 44.000 0.00 0.00 0.00 3.21
1749 1774 1.326328 TGCTGTTGCATTGTTAGGCA 58.674 45.000 0.00 0.00 45.31 4.75
1766 1791 6.070251 TGTTAGGCAATGAGTCCAGAAGATAA 60.070 38.462 0.00 0.00 0.00 1.75
1774 1799 6.174720 TGAGTCCAGAAGATAACAAACAGT 57.825 37.500 0.00 0.00 0.00 3.55
1856 1881 6.353323 TGTCCGAGCAATAATTTCCTCATTA 58.647 36.000 0.00 0.00 0.00 1.90
1860 1888 6.016777 CCGAGCAATAATTTCCTCATTAAGCT 60.017 38.462 0.00 0.00 37.04 3.74
1861 1889 7.173218 CCGAGCAATAATTTCCTCATTAAGCTA 59.827 37.037 0.00 0.00 35.68 3.32
1862 1890 8.012241 CGAGCAATAATTTCCTCATTAAGCTAC 58.988 37.037 0.00 0.00 35.68 3.58
1863 1891 8.752005 AGCAATAATTTCCTCATTAAGCTACA 57.248 30.769 0.00 0.00 34.67 2.74
1864 1892 9.359653 AGCAATAATTTCCTCATTAAGCTACAT 57.640 29.630 0.00 0.00 34.67 2.29
1993 2021 8.420222 TGTCAATTGGAAGAAATTAGCTTTTGA 58.580 29.630 5.42 0.00 0.00 2.69
2065 2094 2.622942 GCACTGAAATTTGTGGGTCAGA 59.377 45.455 9.08 0.00 39.94 3.27
2081 2110 7.029563 GTGGGTCAGACATTTGTTGAAATATC 58.970 38.462 2.17 0.00 30.20 1.63
2118 2230 8.517062 AACTGAATCTTCATAGGGAGAAATTG 57.483 34.615 0.00 0.00 36.46 2.32
2140 2252 0.610232 ATGGAACCTTGCTCACTGGC 60.610 55.000 0.00 0.00 0.00 4.85
2171 2283 4.524053 GGAGTGTTATCCTTACCTTTGGG 58.476 47.826 0.00 0.00 36.35 4.12
2214 2326 5.901276 AGCACATCCATAAAGATCCCAAATT 59.099 36.000 0.00 0.00 0.00 1.82
2215 2327 7.068702 AGCACATCCATAAAGATCCCAAATTA 58.931 34.615 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.064207 TCTATCACAACGCTTGTCAACC 58.936 45.455 1.17 0.00 43.23 3.77
57 58 4.973051 TGTACTAAACGTGCAATTTGCTTG 59.027 37.500 21.19 15.38 45.31 4.01
76 77 5.779806 AATGTGTTAGCGAGTTGATGTAC 57.220 39.130 0.00 0.00 0.00 2.90
80 81 4.806247 GCTCTAATGTGTTAGCGAGTTGAT 59.194 41.667 0.00 0.00 37.75 2.57
89 90 8.518702 TCTGCTATAGATGCTCTAATGTGTTAG 58.481 37.037 3.21 0.00 38.93 2.34
91 92 7.151308 GTCTGCTATAGATGCTCTAATGTGTT 58.849 38.462 3.21 0.00 37.83 3.32
92 93 6.295011 GGTCTGCTATAGATGCTCTAATGTGT 60.295 42.308 3.21 0.00 37.83 3.72
93 94 6.098679 GGTCTGCTATAGATGCTCTAATGTG 58.901 44.000 3.21 0.00 37.83 3.21
94 95 5.186797 GGGTCTGCTATAGATGCTCTAATGT 59.813 44.000 3.21 0.00 37.83 2.71
95 96 5.395103 GGGGTCTGCTATAGATGCTCTAATG 60.395 48.000 3.21 0.00 37.83 1.90
96 97 4.714308 GGGGTCTGCTATAGATGCTCTAAT 59.286 45.833 3.21 0.00 37.83 1.73
97 98 4.090090 GGGGTCTGCTATAGATGCTCTAA 58.910 47.826 3.21 0.00 37.83 2.10
108 109 2.574824 ACCTTTTTACGGGGTCTGCTAT 59.425 45.455 0.00 0.00 0.00 2.97
116 117 1.948834 ACGTTTGACCTTTTTACGGGG 59.051 47.619 0.00 0.00 36.60 5.73
135 137 9.968870 TTTTCAACTTGTACCATAAATACCAAC 57.031 29.630 0.00 0.00 0.00 3.77
155 157 7.931948 GGGATCTATTCGAGGTATTCTTTTCAA 59.068 37.037 0.00 0.00 0.00 2.69
162 164 6.506500 TTACGGGATCTATTCGAGGTATTC 57.493 41.667 0.00 0.00 0.00 1.75
165 167 5.593909 TGTTTTACGGGATCTATTCGAGGTA 59.406 40.000 0.00 0.00 0.00 3.08
169 171 4.142116 TGCTGTTTTACGGGATCTATTCGA 60.142 41.667 0.00 0.00 0.00 3.71
206 208 2.225242 TGAATAGGGGAGCCTGCAAAAA 60.225 45.455 0.00 0.00 0.00 1.94
207 209 1.357420 TGAATAGGGGAGCCTGCAAAA 59.643 47.619 0.00 0.00 0.00 2.44
208 210 0.998928 TGAATAGGGGAGCCTGCAAA 59.001 50.000 0.00 0.00 0.00 3.68
227 232 5.776358 TCTGGATATAACAAATTGGGGCTT 58.224 37.500 0.00 0.00 0.00 4.35
237 242 6.299141 GGCTGAAATCCTCTGGATATAACAA 58.701 40.000 0.00 0.00 42.27 2.83
247 252 3.568538 CAAAAACGGCTGAAATCCTCTG 58.431 45.455 0.00 0.00 0.00 3.35
292 297 4.316823 AGGTCCCCTGCTCCGACA 62.317 66.667 0.00 0.00 29.57 4.35
330 335 2.829458 GCTCCTCCGCCTACTCGT 60.829 66.667 0.00 0.00 0.00 4.18
361 366 3.842923 CTCTGGCGATGCTCCGGT 61.843 66.667 0.00 0.00 0.00 5.28
383 388 3.332385 TGATGCTCCAGCCTGGCA 61.332 61.111 22.65 1.37 41.18 4.92
387 392 3.790437 CCGGTGATGCTCCAGCCT 61.790 66.667 0.00 0.00 41.18 4.58
390 395 2.202987 GCTCCGGTGATGCTCCAG 60.203 66.667 7.92 0.00 0.00 3.86
391 396 4.147449 CGCTCCGGTGATGCTCCA 62.147 66.667 7.92 0.00 0.00 3.86
392 397 4.148825 ACGCTCCGGTGATGCTCC 62.149 66.667 7.92 0.00 0.00 4.70
393 398 2.583593 GACGCTCCGGTGATGCTC 60.584 66.667 7.92 2.42 0.00 4.26
394 399 3.381983 TGACGCTCCGGTGATGCT 61.382 61.111 7.92 0.00 0.00 3.79
395 400 3.188786 GTGACGCTCCGGTGATGC 61.189 66.667 7.92 4.64 0.00 3.91
396 401 1.807165 CTGTGACGCTCCGGTGATG 60.807 63.158 7.92 0.98 0.00 3.07
397 402 2.573869 CTGTGACGCTCCGGTGAT 59.426 61.111 7.92 0.00 0.00 3.06
398 403 3.680786 CCTGTGACGCTCCGGTGA 61.681 66.667 7.92 0.00 0.00 4.02
399 404 3.633094 CTCCTGTGACGCTCCGGTG 62.633 68.421 0.00 0.00 0.00 4.94
400 405 3.374402 CTCCTGTGACGCTCCGGT 61.374 66.667 0.00 0.00 0.00 5.28
456 461 0.884704 TTTCAGTCGGCCAGAACTGC 60.885 55.000 19.98 1.26 32.09 4.40
458 463 2.427506 GAATTTCAGTCGGCCAGAACT 58.572 47.619 2.24 0.00 0.00 3.01
464 469 1.393883 GAACTCGAATTTCAGTCGGCC 59.606 52.381 0.00 0.00 39.01 6.13
468 473 5.800941 ACATAGACGAACTCGAATTTCAGTC 59.199 40.000 6.05 15.66 43.02 3.51
469 474 5.573282 CACATAGACGAACTCGAATTTCAGT 59.427 40.000 6.05 5.77 43.02 3.41
470 475 5.573282 ACACATAGACGAACTCGAATTTCAG 59.427 40.000 6.05 0.00 43.02 3.02
471 476 5.344933 CACACATAGACGAACTCGAATTTCA 59.655 40.000 6.05 0.00 43.02 2.69
473 478 4.091509 GCACACATAGACGAACTCGAATTT 59.908 41.667 6.05 0.00 43.02 1.82
475 480 3.179830 GCACACATAGACGAACTCGAAT 58.820 45.455 6.05 0.00 43.02 3.34
488 493 2.235155 TCTTTCCTAAGGCGCACACATA 59.765 45.455 10.83 0.00 32.02 2.29
492 497 1.346395 TCTTCTTTCCTAAGGCGCACA 59.654 47.619 10.83 0.00 32.02 4.57
498 503 3.926616 TCACGCTTCTTCTTTCCTAAGG 58.073 45.455 0.00 0.00 32.02 2.69
500 505 4.523173 TCTCTCACGCTTCTTCTTTCCTAA 59.477 41.667 0.00 0.00 0.00 2.69
501 506 4.079970 TCTCTCACGCTTCTTCTTTCCTA 58.920 43.478 0.00 0.00 0.00 2.94
543 550 6.537301 GGAACAGATTCCGTAAACATGTATCA 59.463 38.462 0.00 0.00 45.12 2.15
545 552 6.920569 GGAACAGATTCCGTAAACATGTAT 57.079 37.500 0.00 0.00 45.12 2.29
584 591 9.421399 CTCCCCTAAAACAAATTTATGATACCT 57.579 33.333 0.00 0.00 33.15 3.08
585 592 9.197306 ACTCCCCTAAAACAAATTTATGATACC 57.803 33.333 0.00 0.00 33.15 2.73
591 598 9.990868 ATACAGACTCCCCTAAAACAAATTTAT 57.009 29.630 0.00 0.00 33.15 1.40
598 605 8.849543 AATAGTATACAGACTCCCCTAAAACA 57.150 34.615 5.50 0.00 0.00 2.83
621 628 5.105228 TCACGGACGAAGGGAGTATAAAAAT 60.105 40.000 0.00 0.00 0.00 1.82
631 638 2.094390 CACTTATTCACGGACGAAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
632 639 2.268298 CACTTATTCACGGACGAAGGG 58.732 52.381 0.00 0.00 0.00 3.95
633 640 2.955614 ACACTTATTCACGGACGAAGG 58.044 47.619 0.00 0.00 0.00 3.46
634 641 4.730657 AGTACACTTATTCACGGACGAAG 58.269 43.478 0.00 0.00 0.00 3.79
635 642 4.771590 AGTACACTTATTCACGGACGAA 57.228 40.909 0.00 0.00 0.00 3.85
636 643 4.456911 AGAAGTACACTTATTCACGGACGA 59.543 41.667 0.00 0.00 36.11 4.20
637 644 4.730657 AGAAGTACACTTATTCACGGACG 58.269 43.478 0.00 0.00 36.11 4.79
638 645 7.478322 TGATAGAAGTACACTTATTCACGGAC 58.522 38.462 0.00 0.00 36.11 4.79
639 646 7.634671 TGATAGAAGTACACTTATTCACGGA 57.365 36.000 0.00 0.00 36.11 4.69
640 647 8.873215 AATGATAGAAGTACACTTATTCACGG 57.127 34.615 0.00 0.00 36.11 4.94
648 655 9.593134 CTTAGCAGAAATGATAGAAGTACACTT 57.407 33.333 0.00 0.00 39.23 3.16
649 656 8.754080 ACTTAGCAGAAATGATAGAAGTACACT 58.246 33.333 0.00 0.00 0.00 3.55
650 657 8.934507 ACTTAGCAGAAATGATAGAAGTACAC 57.065 34.615 0.00 0.00 0.00 2.90
651 658 8.749354 TGACTTAGCAGAAATGATAGAAGTACA 58.251 33.333 0.00 0.00 0.00 2.90
652 659 9.587772 TTGACTTAGCAGAAATGATAGAAGTAC 57.412 33.333 0.00 0.00 0.00 2.73
654 661 9.160496 CTTTGACTTAGCAGAAATGATAGAAGT 57.840 33.333 0.00 0.00 0.00 3.01
655 662 9.160496 ACTTTGACTTAGCAGAAATGATAGAAG 57.840 33.333 0.00 0.00 0.00 2.85
656 663 9.507329 AACTTTGACTTAGCAGAAATGATAGAA 57.493 29.630 0.00 0.00 0.00 2.10
657 664 9.507329 AAACTTTGACTTAGCAGAAATGATAGA 57.493 29.630 0.00 0.00 0.00 1.98
750 757 9.545105 TCACTAGATTTGTTTTGAAATGCATTT 57.455 25.926 24.33 24.33 0.00 2.32
751 758 9.715121 ATCACTAGATTTGTTTTGAAATGCATT 57.285 25.926 5.99 5.99 0.00 3.56
753 760 9.624697 GTATCACTAGATTTGTTTTGAAATGCA 57.375 29.630 0.00 0.00 35.67 3.96
754 761 9.846248 AGTATCACTAGATTTGTTTTGAAATGC 57.154 29.630 0.00 0.00 35.67 3.56
773 780 9.612620 GCATTTATGGCACTAAATTAGTATCAC 57.387 33.333 5.23 0.00 37.23 3.06
774 781 9.573166 AGCATTTATGGCACTAAATTAGTATCA 57.427 29.630 5.23 7.55 37.23 2.15
775 782 9.831737 CAGCATTTATGGCACTAAATTAGTATC 57.168 33.333 5.23 2.20 37.23 2.24
776 783 8.299570 GCAGCATTTATGGCACTAAATTAGTAT 58.700 33.333 5.23 0.00 37.23 2.12
777 784 7.502226 AGCAGCATTTATGGCACTAAATTAGTA 59.498 33.333 5.23 0.00 37.23 1.82
778 785 6.322201 AGCAGCATTTATGGCACTAAATTAGT 59.678 34.615 0.00 0.00 40.28 2.24
779 786 6.742109 AGCAGCATTTATGGCACTAAATTAG 58.258 36.000 0.00 0.00 30.68 1.73
780 787 6.713762 AGCAGCATTTATGGCACTAAATTA 57.286 33.333 0.00 0.00 30.68 1.40
781 788 5.603170 AGCAGCATTTATGGCACTAAATT 57.397 34.783 0.00 0.00 30.68 1.82
782 789 5.829924 AGTAGCAGCATTTATGGCACTAAAT 59.170 36.000 0.00 0.00 32.76 1.40
783 790 5.192927 AGTAGCAGCATTTATGGCACTAAA 58.807 37.500 0.00 0.00 0.00 1.85
784 791 4.780815 AGTAGCAGCATTTATGGCACTAA 58.219 39.130 0.00 0.00 0.00 2.24
785 792 4.422073 AGTAGCAGCATTTATGGCACTA 57.578 40.909 0.00 0.00 0.00 2.74
786 793 3.287867 AGTAGCAGCATTTATGGCACT 57.712 42.857 0.00 0.00 0.00 4.40
787 794 4.376340 AAAGTAGCAGCATTTATGGCAC 57.624 40.909 0.00 0.00 0.00 5.01
788 795 5.404466 AAAAAGTAGCAGCATTTATGGCA 57.596 34.783 0.00 0.00 0.00 4.92
837 844 9.606631 CATCTAGCTTTTATCCTAAGTCAAAGT 57.393 33.333 0.00 0.00 0.00 2.66
838 845 9.606631 ACATCTAGCTTTTATCCTAAGTCAAAG 57.393 33.333 0.00 0.00 0.00 2.77
850 857 8.979574 GCGAACAAGTATACATCTAGCTTTTAT 58.020 33.333 5.50 0.00 0.00 1.40
851 858 7.166970 CGCGAACAAGTATACATCTAGCTTTTA 59.833 37.037 0.00 0.00 0.00 1.52
852 859 6.019801 CGCGAACAAGTATACATCTAGCTTTT 60.020 38.462 0.00 0.00 0.00 2.27
853 860 5.459107 CGCGAACAAGTATACATCTAGCTTT 59.541 40.000 0.00 0.00 0.00 3.51
854 861 4.976731 CGCGAACAAGTATACATCTAGCTT 59.023 41.667 0.00 0.00 0.00 3.74
855 862 4.537965 CGCGAACAAGTATACATCTAGCT 58.462 43.478 0.00 0.00 0.00 3.32
856 863 3.669122 CCGCGAACAAGTATACATCTAGC 59.331 47.826 8.23 2.81 0.00 3.42
857 864 4.910456 GTCCGCGAACAAGTATACATCTAG 59.090 45.833 8.23 0.00 0.00 2.43
858 865 4.553351 CGTCCGCGAACAAGTATACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
859 866 3.703420 GTCCGCGAACAAGTATACATCT 58.297 45.455 8.23 0.00 0.00 2.90
860 867 2.466571 CGTCCGCGAACAAGTATACATC 59.533 50.000 8.23 0.00 41.33 3.06
861 868 2.456989 CGTCCGCGAACAAGTATACAT 58.543 47.619 8.23 0.00 41.33 2.29
862 869 1.467883 CCGTCCGCGAACAAGTATACA 60.468 52.381 8.23 0.00 41.33 2.29
863 870 1.194495 CCGTCCGCGAACAAGTATAC 58.806 55.000 8.23 0.00 41.33 1.47
864 871 1.064505 CTCCGTCCGCGAACAAGTATA 59.935 52.381 8.23 0.00 41.33 1.47
865 872 0.179145 CTCCGTCCGCGAACAAGTAT 60.179 55.000 8.23 0.00 41.33 2.12
866 873 1.210931 CTCCGTCCGCGAACAAGTA 59.789 57.895 8.23 0.00 41.33 2.24
867 874 2.049433 CTCCGTCCGCGAACAAGT 60.049 61.111 8.23 0.00 41.33 3.16
868 875 2.809601 CCTCCGTCCGCGAACAAG 60.810 66.667 8.23 0.00 41.33 3.16
869 876 4.367023 CCCTCCGTCCGCGAACAA 62.367 66.667 8.23 0.00 41.33 2.83
871 878 4.493747 CTCCCTCCGTCCGCGAAC 62.494 72.222 8.23 0.00 41.33 3.95
872 879 3.626996 TACTCCCTCCGTCCGCGAA 62.627 63.158 8.23 0.00 41.33 4.70
873 880 4.100084 TACTCCCTCCGTCCGCGA 62.100 66.667 8.23 0.00 41.33 5.87
874 881 3.584052 CTACTCCCTCCGTCCGCG 61.584 72.222 0.00 0.00 37.95 6.46
875 882 3.217743 CCTACTCCCTCCGTCCGC 61.218 72.222 0.00 0.00 0.00 5.54
876 883 2.119655 CACCTACTCCCTCCGTCCG 61.120 68.421 0.00 0.00 0.00 4.79
877 884 1.757340 CCACCTACTCCCTCCGTCC 60.757 68.421 0.00 0.00 0.00 4.79
878 885 1.000107 ACCACCTACTCCCTCCGTC 60.000 63.158 0.00 0.00 0.00 4.79
879 886 1.305046 CACCACCTACTCCCTCCGT 60.305 63.158 0.00 0.00 0.00 4.69
880 887 2.722201 GCACCACCTACTCCCTCCG 61.722 68.421 0.00 0.00 0.00 4.63
881 888 0.910088 AAGCACCACCTACTCCCTCC 60.910 60.000 0.00 0.00 0.00 4.30
882 889 0.984995 AAAGCACCACCTACTCCCTC 59.015 55.000 0.00 0.00 0.00 4.30
883 890 2.188817 CTAAAGCACCACCTACTCCCT 58.811 52.381 0.00 0.00 0.00 4.20
884 891 1.209747 CCTAAAGCACCACCTACTCCC 59.790 57.143 0.00 0.00 0.00 4.30
885 892 2.185387 TCCTAAAGCACCACCTACTCC 58.815 52.381 0.00 0.00 0.00 3.85
886 893 3.707102 AGATCCTAAAGCACCACCTACTC 59.293 47.826 0.00 0.00 0.00 2.59
887 894 3.452627 CAGATCCTAAAGCACCACCTACT 59.547 47.826 0.00 0.00 0.00 2.57
888 895 3.798202 CAGATCCTAAAGCACCACCTAC 58.202 50.000 0.00 0.00 0.00 3.18
889 896 2.170607 GCAGATCCTAAAGCACCACCTA 59.829 50.000 0.00 0.00 0.00 3.08
898 905 3.431486 GGTCACTCCAGCAGATCCTAAAG 60.431 52.174 0.00 0.00 35.97 1.85
901 908 1.007118 TGGTCACTCCAGCAGATCCTA 59.993 52.381 0.00 0.00 41.93 2.94
902 909 0.252421 TGGTCACTCCAGCAGATCCT 60.252 55.000 0.00 0.00 41.93 3.24
912 919 1.003718 CGAGGGGTTTGGTCACTCC 60.004 63.158 0.00 0.00 37.62 3.85
916 923 1.719529 TTAGACGAGGGGTTTGGTCA 58.280 50.000 0.00 0.00 31.93 4.02
917 924 2.845363 TTTAGACGAGGGGTTTGGTC 57.155 50.000 0.00 0.00 0.00 4.02
918 925 3.181437 ACAATTTAGACGAGGGGTTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
920 927 4.082949 GGAACAATTTAGACGAGGGGTTTG 60.083 45.833 0.00 0.00 0.00 2.93
921 928 4.077108 GGAACAATTTAGACGAGGGGTTT 58.923 43.478 0.00 0.00 0.00 3.27
922 929 3.560668 GGGAACAATTTAGACGAGGGGTT 60.561 47.826 0.00 0.00 0.00 4.11
923 930 2.026542 GGGAACAATTTAGACGAGGGGT 60.027 50.000 0.00 0.00 0.00 4.95
924 931 2.640184 GGGAACAATTTAGACGAGGGG 58.360 52.381 0.00 0.00 0.00 4.79
935 949 1.771854 GGGTTTTGGTGGGGAACAATT 59.228 47.619 0.00 0.00 0.00 2.32
1284 1304 4.373116 ACGATGCGGAACTGCGGT 62.373 61.111 0.00 0.00 37.81 5.68
1323 1343 3.757248 GACGGCAGCATAGGGGTGG 62.757 68.421 0.00 0.00 45.14 4.61
1373 1394 2.778299 TGATCACACCTTTGCACCTAC 58.222 47.619 0.00 0.00 0.00 3.18
1375 1396 2.559668 CAATGATCACACCTTTGCACCT 59.440 45.455 0.00 0.00 0.00 4.00
1379 1400 1.895131 ACCCAATGATCACACCTTTGC 59.105 47.619 0.00 0.00 0.00 3.68
1393 1414 3.282021 CAAGCAGCAGTATACACCCAAT 58.718 45.455 5.50 0.00 0.00 3.16
1398 1419 5.551760 AATTCACAAGCAGCAGTATACAC 57.448 39.130 5.50 0.00 0.00 2.90
1408 1429 9.853921 GTTTTATTTCAAGAAATTCACAAGCAG 57.146 29.630 12.73 0.00 40.99 4.24
1424 1445 8.634335 TCATCCACATCTCAAGTTTTATTTCA 57.366 30.769 0.00 0.00 0.00 2.69
1455 1476 1.064003 AGCACATGTTACCCTCCACA 58.936 50.000 0.00 0.00 0.00 4.17
1461 1482 0.887933 CCAACCAGCACATGTTACCC 59.112 55.000 0.00 0.00 0.00 3.69
1463 1484 3.836949 CATTCCAACCAGCACATGTTAC 58.163 45.455 0.00 0.00 0.00 2.50
1669 1694 2.967887 ACCACGGTTTCAAGGTACTACT 59.032 45.455 0.00 0.00 38.49 2.57
1720 1745 2.252976 TGCAACAGCACATACACTCA 57.747 45.000 0.00 0.00 32.31 3.41
1731 1756 2.437200 TTGCCTAACAATGCAACAGC 57.563 45.000 0.00 0.00 42.19 4.40
1747 1772 6.072508 TGTTTGTTATCTTCTGGACTCATTGC 60.073 38.462 0.00 0.00 0.00 3.56
1749 1774 7.173907 CACTGTTTGTTATCTTCTGGACTCATT 59.826 37.037 0.00 0.00 0.00 2.57
1766 1791 0.839946 AGTCCAGGCTCACTGTTTGT 59.160 50.000 0.00 0.00 46.06 2.83
1774 1799 1.074405 AGCAATTCAAGTCCAGGCTCA 59.926 47.619 0.00 0.00 0.00 4.26
1812 1837 1.140252 AGTCGTGGTAAGGTGCTTGTT 59.860 47.619 0.00 0.00 0.00 2.83
1860 1888 4.701651 GCAGGAAATGGCTGCATATATGTA 59.298 41.667 14.14 8.88 42.98 2.29
1861 1889 3.508793 GCAGGAAATGGCTGCATATATGT 59.491 43.478 14.14 0.00 42.98 2.29
1862 1890 4.106029 GCAGGAAATGGCTGCATATATG 57.894 45.455 8.45 8.45 42.98 1.78
1893 1921 3.591977 AGCCCAAAGGTAAGGTACAGATT 59.408 43.478 0.00 0.00 34.57 2.40
2065 2094 6.869913 CACCTTGCAGATATTTCAACAAATGT 59.130 34.615 0.00 0.00 33.95 2.71
2081 2110 7.452559 TGAAGATTCAGTTTGCACCTTGCAG 62.453 44.000 0.45 0.00 42.53 4.41
2097 2126 8.566260 CATCACAATTTCTCCCTATGAAGATTC 58.434 37.037 0.00 0.00 0.00 2.52
2118 2230 1.808945 CAGTGAGCAAGGTTCCATCAC 59.191 52.381 0.00 0.00 40.41 3.06
2140 2252 6.483640 GGTAAGGATAACACTCCTAGCATTTG 59.516 42.308 0.00 0.00 45.15 2.32
2171 2283 9.884465 GATGTGCTATTAATTAATGGTCTGAAC 57.116 33.333 18.98 11.49 0.00 3.18
2214 2326 2.042297 TCCAACTGACATGGGCCAAATA 59.958 45.455 11.89 0.00 38.54 1.40
2215 2327 1.203162 TCCAACTGACATGGGCCAAAT 60.203 47.619 11.89 0.00 38.54 2.32
2262 2375 7.716998 AGACAGAACTGAGTTCACAAATAACAT 59.283 33.333 25.45 0.00 44.11 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.