>input_sequence_84296
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-----------------------------------------------------ATGGGGCTCTTCTCGTGGTGGAGGGGC
TCCCGCCGCGGCTCGCCGGAGCAGGCCCCGAACCAGCAGCCGGCGAAGGGAGCGGGAGGCGCGCAGGCCCAGGTGGCCGT
CCCCGGCACCCATGGGGCGGTGGAGGTGCTGCGGCAGCGGCA------GCCGGACGCGACGGTCTTCGAGTTCGGGTCGG
CGGCGGAGTCCGGCACCGCCGTCACGCTCGCAGGGTACTGCCCCGTCTCCGACGAGCTCGAGCCGTGCCGCTGGGAGCTG
GTGCCCGCCACCGGCGAGGGCGCACCGCAGTTCCGCATCGTGTTCTGA--------------------------------
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>chr1D_1_TraesCS1D01G319300
TTGAAGTTGGATGAGGACGGTTAAGCTTTGGTTGACAAGCGTTGTGATAGATAAAAGCAAGCAAATTGCACGTTTAGTAC
ATCAACTCGCTAACACATTAGAGCATCTATAGCAGACCCCGTAAAAA-GGTCAAACGTTGGTATTTATGGTACAAGTTGA
AAAGAATACCTCGAATAGATCCCGTAAAACAGCATATCCCGTAATTTTTT-TTGCAGGCTCCCC--TATTCAAGCCCCAA
TTTGTTATATCCAGAGGATTTCAGCCGTTTTTGGAGGATCCTGTAAAGCCGGTCAATGTCGGAGCAGGGGACCTCGTGAC
GCCGCGCATGAGCAACGAGTAGGCGGAGGAGCTCGCTGGCGGCCGACCGGAGCATCGCCAGAGCACGTGCCAGGCTGGAG
CATCACCGGAGCGTCACAGGAGCAGGCAGCGGGCCACATCAGGCGGCAAGCCGGAGCGGCGCAGTTCTGGCCGACTGAAA
TTCGAGTTCGTCTATGTGTGCGCCTTAGGAAAGAAGAAGCGTGAGAGAAAAAAG--AAAAGAAAATTTATGATACATGTT
TACGGAATCTGTTCCGCCCTTGATGCCTCGAGGTATCATAAATTTGTTTTAGGGGAGTCTGTATACTATTTTTATACTCC
CTTCGTCCGTGAATAAGTGTACTTCTATCATTTCTGCTAAGTCAAAGTTTTATAATTTTGATCAATTTTTTAGAAAAGAG
TAGTAGTATATATGACATCAAATTGATATATTATGAAAATGCATTTCAAAACAAATCTAGTGATACTAATTTAGTGCCAT
AAATGCTGCTACTTTTTTCTATAAAGTTGGTTAAAGTTTTAAAACTTTGACTTAGGATAAAAGCTAGATGTATACTTGTT
CGCGGACGGAGGGAGTAGGTGGTGCTTTAGGATCTGCTGGAGTGACCAAAC-------CCCTCGTCTAAATTGTTCCCCA
CCAAAACCCTAGAATCCCCTAATCCAATCCCCACCGGTTCCCCACGTCTGCCGATGGGGCTCTTCTCGTGGTGGAGGGGC
TCCCGCCGCGGCTCGCCGGAGCAGGCCCCGAACCAGCAGCCGGCGAAGGGAGCGGGAGGCGCGCAGGCCCAGGTGGCCGT
CCCCGGCACCCATGGGGCGGTGGAGGTGCTGCGGCAGCGGCA------GCCGGACGCGACGGTCTTCGAGTTCGGGTCGG
CGGCGGAGTCCGGCACCGCCGTCACGCTCGCAGGGTACTGCCCCGTCTCCGACGAGCTCGAGCCGTGCCGCTGGGAGCTG
GTGCCCGCCACCGGCGAGGGCGCACCGCAGTTCCGCATCGTGTTCTGAGCACGAGGAGATAACCA-CCCCTATGCTGCCG
TCGCGGTATCTATCTTGGGTGTTGCCAGGTTTCGTAGGTGCAAAGGTGTGATCATTGGGTGTATACTGCTGCTTGTGAAT
TTCTTGAAATAAAACTTGAGATGTGGATGAGTCCTTGTGGAGGGTAACATGTGCTGGTTGGAATGCTGGGCTTTCTGTCA
GTTTGTGATGAACAAATTAGCCAATTTCGGCAGCTCTTTATAAGATTTATCAAATTAGCTTATCTT-ATGGATTGCTGTA
C-TTT--GGCTTTTGTATCCACTGCAATTTGTGGGCTAGCCATTTGTTGAAATATTTTCAAGATGCAAACTAAATCTTCA
TAGGGATTAGGGAAGTAGTACCTTGAAACCGTGGTGGAAGTCAATTTGCTCACTGGGAGATGTATGAGTGTATGTGCTGT
TGCATTGTTAGGCAATGAGTCCAGAAGATAACAAACAGTGAGCCTGGACTTGAATTGCTCCATGACCAATGGTAAGAACA
AGCACCTTACCACGACTGTCCGAGCAATAATTTCCTCATTAAG---CTACATATATGCAGCCATTTCCTGCCTTTTTTTT
AATCTGTACCTTACCTTTGGGCTTAGACTTCTAATTGATAGCACATCCATAAAGATCCCAAACTATTTGGTTCATGTCAA
TTGGAAGAAATTAGCTTTTGACTTTCAAATTAGCTTATCATGATGTATTGCTGTAC-TTTTGGCTTTGGTATGCACTGAA
ATTTGTGGGTCAGACATTTGTTGAAATATCTGCAAGGTGCAAACTG----------------------------------
-------------------------------------------------AATCTTCATAGGGAGAAATTGTGATGGAACC
TTGCTCACTGGCAAATGCTAGGAGTGTTATCCTTACCTTTGGGTTCAGACCATTAATTAATAGCACATCCATAAAGATCC
CAAATTAT-TTGGCCCATGTCAGTTGGAAGAATCGTCTAGCTAGTGCTAAAATAATGTTATTTGTGAACTCAGTTCTGTC
TTATTGGGGGTCCATTTCTCC
>chr1A_1
TTGAAGTTGGATGAGGACGGTTAAGCTTTTGTTGACAAGCGTTGTGATAGATAAAAGAAAGCAAATTGCACGTTTAATAC
GTCAACTCGTTGCGCGT-TAGAGCATCTCTAGTAGATTCCGTAAAAACGGTCAAACCTTGGTATTTATGGTACAAGCTGA
AAAAATCATCCCGAATAGATCTTGTAAAACAACATATCCTGTAAAAAAAAATTGCAGGCTCCCCTATATTCGAACCCCAG
TCTGTTATGTTTAGAGGATTTCGGCCGTTTTTGGAGGATCCTGTAAAGCCGGTCAACGCCGGAGCAGGGGACCTCTCGAC
GCCGTGCACAAGCAGCGAACAGGCGGAGGAATTCGCCGACAGCTGGCCGGAGCATCGCCAGAGCACGCGTCGGC------
-----CCGGCGCGTCACCAAAGTAGGTAGCGGGCCAAATCAGGCGGAAATCAAT-------------------------G
TTCGAGTTCGTCCATGCCTGTGTCCCAGGGAAGAAGAAGCATGAGGA--------AAAAAAAATGTTTACTGTGTGGGTT
TACAAAATTTGTTCCGACT--GACGCCTCGCTGTATCGTAAATTCGTTTTAGGGGAGCCCGTATAGTGTTTTTAC-----
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----------------AGGTGGTGTTTATGGGATTGCTAGAGATGCTCTTGCACCGAACCCACGTCTAGATTGTTCCCCA
CCAAAACCCTAGAATCCCCTAATCCAATCCCCACCGGTTCCCCACGTCTGCCGATGGGGCTCTTCTCGTGGTGGAGGGGC
TCCCGCCGCGGCTCGCCGGAGCAGGCCCCGAGCCAGCAGGCCGCGAAGGGAGCGGGAGGCGCGCAGGCCCAGGTGGCCGT
CCCCGGCACCCATGGGGCGGTGGAGGTGCTGCGGCAGCGGCA------GCCGGACGCGACGGTCTTCGAGTTCGGGTCGG
CGGCGGAGTCGGGCACCGCCGTCACGCTCGCCGGCTACTGCCCCGTCTCCGACGAGCTCGAGCCGTGCCGCTGGGAGCTG
GTGCCCGCCACCGGCGAGGGCGCCCCGCAGTTCCGCATCGTGTTCTGAGCACGAGGAGATAAGCACCCCCTATGCTGCCG
TCGCGCTATCTATCTTGGGTGTTGCGAGGTTTCTTGGGTACAAAGGTGTGATCTTTGGCTGTATACTGGTGCTTGTGCAT
TTCCCGAAATAAAGCTTGAGATATTGATGAGTCCTGGTGGATGATAACATGTGCTGGCTGAAATTCTGGGCTTGCTGTC-
GTTTGTGATGAACAAATTAGCCAATTTCGGCAGCTCTTTATAACAC-TACCAAATTA-------------GATTGCTGTA
CTTTT--GGCTTTTGTATGCACTGAAATTTGTGGGCCAGCCATTTGTTGAAATATTTTCAAGATGCAAACTAAATCTTCA
TAGGGATTAGGGAGGTAGTACCTTGAAATTGTGGTGGAAGTCAATTTGCTCACTGGGAGATGTAGGAGTGTATGTCCTGT
TGCATTGTTAGAC-ATGAGTCCAAAAGATATCAAACAGGGAACCTGGGCTTGAATTGCTCCTTGACCAATGGTAAGGACA
AGTACCTTGCCACGACTGTCCGAGCAATAATTTCCTCATTGAG---CAC---ATATGCAGCCATTTCCTGCCTTTTTTTG
TGTCTGTACCTTACCTTTGGGCTTAGAATTTTAGTTGATAGCACATACATGAAGATCCCAAACTAGTTGGTTCATGCCAA
TTGGAAGAAATTAGGTTTTGGCTTTCAAATTAGCTTATCTTGATGTATTGCTGTAC-TTTTGGCTTTGGTATGCACTGAA
ATTTGTGGATCAGCCATTTGTTGAAATATTTGCAAGGTGCAAACTA----------------------------------
-------------------------------------------------AATCTTCATAGGG------------------
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>chr3D_94
CACAC---------------------------------------------------------------------------
----------------T-TAGAGCATCTCTAGCAGATCCTGTAAAAATGGTCAAACCCTGGTATTTATGATACAAGGTGG
AAAAAACGCCCCGAATAGATCCCGTAAAACAGCATATCCCGTAAAAAAAAATTACAGGCTCGCCTATATTCGAGCCCCAA
TCCTTTATACCTAGTGGATTTCAGCC-TTTTTGGAGGATCCTGTAAA-CCAGTCAACGCCGGAGCAGGGGGCCTCGCAAC
GTCGCGCATGAGCAGCAAGGAGGCGGAGGA-CTCGTCGGTGGCCGGCCGGAGCATCGCCGGAGCACACGCCGAG------
-----CTGGAGCGTCGC-GGAGCAGGCAGCGGGCCACATCAGGCGGCAGGCCGGAGCGACACCGTTCTAGCCAGTCGGAG
TTCGAGTCCGTCCATGCGTGCGTCCCGGGGAAGAAGAAGTATGAGGAGAAAAGAGAAAAAAAAAGTTTACGGTACGGGTT
TACGGGATCTATTCCGCCC--GATGCCTCGCAATACCGTAAATTCGTTTTAGGTGAGCCTGTATACTGTTTTTTTAC---
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>chr1B_919
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----------------------------------------------------ACCAAACCCTCGTCTAGATTGTTGCCCA
CCAAAACCCTAGAATCCCCTAATCCAATCCCCACCGGTTCCCCACGTCTGCCGATGGGGCTCTTCTCGTGGTGGAGGGGC
TCCCGCCGCGGCTCGCCGGAGCAGGCCCCGAGCCAGCAGCCGGCGAAGGGAGCGGGAGGCGCGCAGGCCCAGGTGGCCGT
CCCCGGCACCCACGGGGCGGTGGAGGTGCTGCGGCAGCGGCAGCGGCAGCCGGACGCGACGGTCTTCGAGTTCGGGTCGG
CGGCGGAGTCGGGTACCGCCGTCACGCTCGCTGGCTACTGCCCCGTCTCCGACGAGCTCGAGCCGTGCCGCTGGGAGTTG
GTGCCCGCCACCGGCGAGGGCGCCCCGCAGTTCCGCATCGTGTTCTGAGCACGAGGAGATAAGCACCCC-TATGCTGCCG
TCGCGGTATCTATCTTGGGTGTTGCCAGGTTTCATGGGTACAAAGGTGTGGTCTTTGGCTGTATACTGGTGCTTGTGAAT
TTCTCGAAATAAAACTTGAGATATTGATGGGTCCTGGTGGATGATAACATGTGCTGGTTGGAATGTTGGGCTTGCTGTC-
GTTTGTGATGAACAAATTAGCCAATTTCAGCAGCTATTTATAAGAC-TATCAAATTAGCTTATCTTGATGGATTGCTGTA
C-TTTTTGGCTTTTGTATGCACTGAAATTTGTGGGCCAGCCATTTGTTGAAATATTTTCAAGATGCAAACTTTATCTTCT
TAAGGATTAG--------------GAAACCGTGGTGGAAGTCAATTTGCTCACTGGGAGATGTAGGAGTGTATGTCCTGT
TGCATTGTTAGAC-ATGAGTCCAGACGATATTTCCT-----GCCTGGACTTGAATTGCTCCATCACCAATGGTAAGGACA
AACACCTTACCACGACTGTCCGAGCAATAATTTCCTCATTGAGCTACAC---ATATGCAGTCATTTCCTGCCTTTTTTGT
-ATCTGTACCTTACCTTTGGGCTTAGACTTCTAATTGATAGCACATCCATAAAGATCCCAAACTATTTGGTTCATGTCAA
TTGGAAGAAATTAGCTTTTGGCTTTCAAATTAGCTTATCATGATGTATTGCTGTACTTTTTGGCTTTGGTATGCACTGAA
ATTTGTGGGTCAGCCATTTGTTGAAATATTTGCAAGATGCAAACTACTCCATCCGACCCAAAATGTAAGACGTTTTTTGA
CACTACACTAGTATTAAAAAACGTCTTACATTTCGGGATGGAGGGAGTAAATCTTTATAGAGAGAAATTATGATGGAACC
TTGCTCACTGGGAAATGCTAGGAGTGTTATCCTTACCTTTGGTTTCAGACCATTAATTAATAGCACATCCATAAAGATCC
CAAATACTGTTGGCCCATGTCAGTTGGAAGAATCGTCTAGCTAGTGCTAAAATACTGTTATTTGTGAACTCAGTTCTGTC
TTATTGGGGGTCCATTTCTCC
>SNPs
-----------------------------S---------------------------S------------------S---
S--------S-SSSSSSS----------S-------S-------------------S-------------------S---
---S--S---S---------------------------------SSSSSS---------------------S--------
-S---------S--------------------------------------------S-S-----------------S---
--------------S----S----------S-----S--------S---------------------S---S--SSSSSS
SSSSS------------S----------------------------------------S-S-S-----S---SSSS-S-S
------------S---S-----S-SS---S----------S----SSS----SS------S---S----S-S---SS---
-------------------SS---------SS-----S------S------------S---------S---------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS--------S--SS--SSS----S---SSS-SSSSS-----------------S-----------
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-------------------------------S------------------------------------------------
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----------S--------------------S--S---------------------------------------------
-----------------------S--------------------------------------S-----------------
---------------------------------S-S---S-------------S----S---------S-----------
----S-----------------S-S----------S-----S-S-----------------------------S-----S
---------------------------------------------SS---------------------------------
------------------S-----S-----------S-------------------------------------------
-------------S--------------------------------------------------S----------S----
-----------S-S----------------S-------S-------------------------------------S---
----------------------------------------S------SSSSS----------------------------
S-------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
-------------S---------------S---------------S----------------------------------
---------------------------------------------------------------------S----------
-----------S------------------------------S-------------------------------------
-----SS-----------------------------------------------S-------------------------
---------------------
>forward_506
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------TTCGTCTATGTGTGCGCCTT------------------------------------------------------
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>reverse_1791
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------------------------------ACAAACAGTGAGCCTGGACT------------------------------
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