Multiple sequence alignment - TraesCS1D01G317000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G317000 chr1D 100.000 4969 0 0 1 4969 412029120 412024152 0.000000e+00 9177.0
1 TraesCS1D01G317000 chr1D 84.314 102 11 2 2059 2160 120537708 120537612 1.470000e-15 95.3
2 TraesCS1D01G317000 chr1A 95.832 2615 81 14 1680 4289 508557256 508554665 0.000000e+00 4200.0
3 TraesCS1D01G317000 chr1A 82.899 1228 105 49 339 1478 508558742 508557532 0.000000e+00 1007.0
4 TraesCS1D01G317000 chr1A 84.793 217 20 7 4304 4512 508554485 508554274 6.520000e-49 206.0
5 TraesCS1D01G317000 chr1B 95.521 2389 51 17 2155 4539 555299885 555297549 0.000000e+00 3768.0
6 TraesCS1D01G317000 chr1B 91.601 762 32 9 1032 1769 555300869 555300116 0.000000e+00 1024.0
7 TraesCS1D01G317000 chr1B 81.766 872 43 39 213 1038 555301926 555301125 1.520000e-174 623.0
8 TraesCS1D01G317000 chr1B 95.690 232 9 1 1836 2066 555300119 555299888 6.070000e-99 372.0
9 TraesCS1D01G317000 chr1B 85.222 203 26 4 11 211 555302158 555301958 6.520000e-49 206.0
10 TraesCS1D01G317000 chr1B 86.538 156 12 4 4754 4905 555297484 555297334 3.980000e-36 163.0
11 TraesCS1D01G317000 chr1B 100.000 30 0 0 4654 4683 555297550 555297521 6.950000e-04 56.5
12 TraesCS1D01G317000 chr5D 87.234 94 9 1 2063 2156 164606044 164605954 2.450000e-18 104.0
13 TraesCS1D01G317000 chr5B 83.621 116 14 4 2043 2158 472738502 472738612 2.450000e-18 104.0
14 TraesCS1D01G317000 chr7D 86.458 96 10 1 2061 2156 497023333 497023241 8.800000e-18 102.0
15 TraesCS1D01G317000 chr7A 86.458 96 10 1 2061 2156 562275011 562274919 8.800000e-18 102.0
16 TraesCS1D01G317000 chr5A 85.577 104 6 6 2061 2161 55159071 55158974 3.170000e-17 100.0
17 TraesCS1D01G317000 chr4A 85.417 96 13 1 2063 2157 629375395 629375490 1.140000e-16 99.0
18 TraesCS1D01G317000 chr2D 86.957 92 7 3 2068 2159 300436387 300436301 1.140000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G317000 chr1D 412024152 412029120 4968 True 9177.000000 9177 100.000000 1 4969 1 chr1D.!!$R2 4968
1 TraesCS1D01G317000 chr1A 508554274 508558742 4468 True 1804.333333 4200 87.841333 339 4512 3 chr1A.!!$R1 4173
2 TraesCS1D01G317000 chr1B 555297334 555302158 4824 True 887.500000 3768 90.905429 11 4905 7 chr1B.!!$R1 4894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 432 0.036294 GCTACCATAATCCCTCGCCC 60.036 60.0 0.00 0.00 0.00 6.13 F
1362 1791 0.253327 GATCTTCTTTCCCCGTGGCT 59.747 55.0 0.00 0.00 0.00 4.75 F
1593 2067 0.032952 TGTTACTGTCTCGGCACACC 59.967 55.0 0.00 0.00 0.00 4.16 F
3461 3980 0.244994 AGACTGTCAGCCATGTCGAC 59.755 55.0 9.11 9.11 34.92 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1451 1885 0.531974 GACAGAGCACCAAACGACCA 60.532 55.000 0.00 0.0 0.00 4.02 R
2285 2804 2.281761 CTGCCGTTGCCAAGAGGT 60.282 61.111 1.51 0.0 37.19 3.85 R
3506 4025 0.250295 TTCCTCCACAGAAGCCGTTG 60.250 55.000 0.00 0.0 0.00 4.10 R
4629 5326 0.035056 CTCCTGCACCCCTGGTTAAG 60.035 60.000 0.00 0.0 31.02 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.498056 CCCCACTGTTGTGTTGGCC 61.498 63.158 0.00 0.00 42.34 5.36
23 24 1.319614 ACTGTTGTGTTGGCCACCAC 61.320 55.000 25.42 25.42 43.85 4.16
26 27 1.000993 TTGTGTTGGCCACCACCTT 59.999 52.632 28.38 0.00 43.85 3.50
41 42 2.171448 CCACCTTGACCATCCCTCTAAG 59.829 54.545 0.00 0.00 0.00 2.18
42 43 1.840635 ACCTTGACCATCCCTCTAAGC 59.159 52.381 0.00 0.00 0.00 3.09
52 53 1.687297 CCCTCTAAGCCCTTCGACCC 61.687 65.000 0.00 0.00 0.00 4.46
53 54 0.976073 CCTCTAAGCCCTTCGACCCA 60.976 60.000 0.00 0.00 0.00 4.51
55 56 1.153628 CTAAGCCCTTCGACCCACG 60.154 63.158 0.00 0.00 44.09 4.94
63 64 3.045142 TCGACCCACGACAACTCC 58.955 61.111 0.00 0.00 46.45 3.85
65 66 2.048503 GACCCACGACAACTCCGG 60.049 66.667 0.00 0.00 0.00 5.14
81 82 2.614013 GGTGACCACCCCATCCCT 60.614 66.667 7.95 0.00 45.68 4.20
84 85 1.163309 TGACCACCCCATCCCTTCT 59.837 57.895 0.00 0.00 0.00 2.85
88 89 0.475906 CCACCCCATCCCTTCTCATC 59.524 60.000 0.00 0.00 0.00 2.92
89 90 1.216064 CACCCCATCCCTTCTCATCA 58.784 55.000 0.00 0.00 0.00 3.07
104 105 0.888736 CATCAACCTGCACCCGTCAA 60.889 55.000 0.00 0.00 0.00 3.18
116 117 1.210967 ACCCGTCAAGTTTTGGACTCA 59.789 47.619 0.00 0.00 37.72 3.41
175 176 1.226542 CCCTGGTGATGCTCATGCT 59.773 57.895 0.00 0.00 40.48 3.79
181 183 2.910994 GATGCTCATGCTGCCCCC 60.911 66.667 0.00 0.00 40.48 5.40
182 184 4.889112 ATGCTCATGCTGCCCCCG 62.889 66.667 0.00 0.00 40.48 5.73
201 203 1.740296 TTTCGGGCTCACGCTAAGC 60.740 57.895 0.00 0.00 39.09 3.09
210 212 0.672401 TCACGCTAAGCCGAAAAGGG 60.672 55.000 0.00 0.00 41.48 3.95
262 293 0.676782 ATTAGTTGGGCGCACACCTC 60.677 55.000 14.97 6.78 0.00 3.85
267 298 4.408821 GGGCGCACACCTCCATGA 62.409 66.667 10.83 0.00 0.00 3.07
276 307 3.256631 GCACACCTCCATGAAGTCAAAAT 59.743 43.478 0.00 0.00 0.00 1.82
278 309 5.619981 GCACACCTCCATGAAGTCAAAATAC 60.620 44.000 0.00 0.00 0.00 1.89
279 310 5.010282 ACACCTCCATGAAGTCAAAATACC 58.990 41.667 0.00 0.00 0.00 2.73
319 350 6.806120 AAAGTCGTAGCAAAATTTGTGAAC 57.194 33.333 7.60 2.99 0.00 3.18
324 355 4.681025 CGTAGCAAAATTTGTGAACTGCAT 59.319 37.500 11.67 1.95 32.21 3.96
325 356 5.387649 CGTAGCAAAATTTGTGAACTGCATG 60.388 40.000 11.67 0.00 32.21 4.06
326 357 4.695396 AGCAAAATTTGTGAACTGCATGA 58.305 34.783 11.67 0.00 32.21 3.07
327 358 4.748102 AGCAAAATTTGTGAACTGCATGAG 59.252 37.500 11.67 0.00 32.21 2.90
328 359 4.084223 GCAAAATTTGTGAACTGCATGAGG 60.084 41.667 7.60 0.00 0.00 3.86
381 412 9.549509 TTTGCGAATATTTTTGTATGTGTACTC 57.450 29.630 0.00 0.00 0.00 2.59
401 432 0.036294 GCTACCATAATCCCTCGCCC 60.036 60.000 0.00 0.00 0.00 6.13
436 467 6.371809 TTTTCTTAGCACACGAAAAGTCAT 57.628 33.333 0.00 0.00 33.24 3.06
446 477 6.801377 GCACACGAAAAGTCATATTCATTCAA 59.199 34.615 0.00 0.00 0.00 2.69
552 609 6.977244 ATCCCATAAGCCCTAAATCACTAT 57.023 37.500 0.00 0.00 0.00 2.12
556 613 6.207417 CCCATAAGCCCTAAATCACTATTGTG 59.793 42.308 0.36 0.36 45.07 3.33
558 615 7.041098 CCATAAGCCCTAAATCACTATTGTGTC 60.041 40.741 7.18 0.00 44.14 3.67
578 638 5.915196 GTGTCTTTTATCCAAACAGCTCAAC 59.085 40.000 0.00 0.00 0.00 3.18
582 642 8.017946 GTCTTTTATCCAAACAGCTCAACTTAG 58.982 37.037 0.00 0.00 0.00 2.18
583 643 7.936847 TCTTTTATCCAAACAGCTCAACTTAGA 59.063 33.333 0.00 0.00 0.00 2.10
591 651 6.715347 AACAGCTCAACTTAGACCATTTTT 57.285 33.333 0.00 0.00 0.00 1.94
592 652 6.076981 ACAGCTCAACTTAGACCATTTTTG 57.923 37.500 0.00 0.00 0.00 2.44
638 706 4.686191 TCACAAGCCACAAATTCCAAAT 57.314 36.364 0.00 0.00 0.00 2.32
639 707 4.630111 TCACAAGCCACAAATTCCAAATC 58.370 39.130 0.00 0.00 0.00 2.17
640 708 3.747529 CACAAGCCACAAATTCCAAATCC 59.252 43.478 0.00 0.00 0.00 3.01
642 710 2.618794 AGCCACAAATTCCAAATCCCA 58.381 42.857 0.00 0.00 0.00 4.37
645 713 4.043184 AGCCACAAATTCCAAATCCCAAAT 59.957 37.500 0.00 0.00 0.00 2.32
646 714 4.766373 GCCACAAATTCCAAATCCCAAATT 59.234 37.500 0.00 0.00 0.00 1.82
647 715 5.942826 GCCACAAATTCCAAATCCCAAATTA 59.057 36.000 0.00 0.00 0.00 1.40
648 716 6.128035 GCCACAAATTCCAAATCCCAAATTAC 60.128 38.462 0.00 0.00 0.00 1.89
661 729 4.944930 TCCCAAATTACTACCAAATCCACG 59.055 41.667 0.00 0.00 0.00 4.94
666 734 6.540438 AATTACTACCAAATCCACGAGAGA 57.460 37.500 0.00 0.00 0.00 3.10
670 738 3.601443 ACCAAATCCACGAGAGAAGAG 57.399 47.619 0.00 0.00 0.00 2.85
681 749 4.271049 CACGAGAGAAGAGAAACAAAAGCA 59.729 41.667 0.00 0.00 0.00 3.91
725 793 1.855599 CATCCATCTCCCTTTCCCCTT 59.144 52.381 0.00 0.00 0.00 3.95
736 804 1.433199 CTTTCCCCTTCCCTTTTCCCT 59.567 52.381 0.00 0.00 0.00 4.20
791 859 1.878734 CGCAGCTACCCCTACTACTAC 59.121 57.143 0.00 0.00 0.00 2.73
792 860 2.486907 CGCAGCTACCCCTACTACTACT 60.487 54.545 0.00 0.00 0.00 2.57
793 861 3.244353 CGCAGCTACCCCTACTACTACTA 60.244 52.174 0.00 0.00 0.00 1.82
794 862 4.071423 GCAGCTACCCCTACTACTACTAC 58.929 52.174 0.00 0.00 0.00 2.73
817 885 3.452474 AGTACTACTCGTAGCACTACCG 58.548 50.000 7.94 0.00 37.85 4.02
858 939 3.582120 GGGCACACACACACCACG 61.582 66.667 0.00 0.00 0.00 4.94
1361 1790 0.748367 GGATCTTCTTTCCCCGTGGC 60.748 60.000 0.00 0.00 0.00 5.01
1362 1791 0.253327 GATCTTCTTTCCCCGTGGCT 59.747 55.000 0.00 0.00 0.00 4.75
1451 1885 5.347907 CCAGCGACGAACTAGTTAGAATTTT 59.652 40.000 20.84 0.00 0.00 1.82
1472 1906 0.582005 GTCGTTTGGTGCTCTGTCAC 59.418 55.000 0.00 0.00 36.28 3.67
1519 1993 3.402628 TGTTCTGAAAGCTAGGTGTCC 57.597 47.619 9.62 0.00 0.00 4.02
1550 2024 3.202706 GCGAAGGGAATCGGGTGC 61.203 66.667 0.00 0.00 42.93 5.01
1551 2025 2.513897 CGAAGGGAATCGGGTGCC 60.514 66.667 0.00 0.00 39.12 5.01
1556 2030 3.219198 GGAATCGGGTGCCATGGC 61.219 66.667 30.54 30.54 42.35 4.40
1578 2052 4.679197 GCTGCGAATTTTGTCACAATGTTA 59.321 37.500 0.00 0.00 0.00 2.41
1592 2066 2.080286 ATGTTACTGTCTCGGCACAC 57.920 50.000 0.00 0.00 0.00 3.82
1593 2067 0.032952 TGTTACTGTCTCGGCACACC 59.967 55.000 0.00 0.00 0.00 4.16
1623 2098 3.367743 CGACGGACGAAGGGACCA 61.368 66.667 0.00 0.00 45.77 4.02
1625 2100 1.595357 GACGGACGAAGGGACCATT 59.405 57.895 0.00 0.00 0.00 3.16
1636 2111 1.508088 GGACCATTTTGCCGCTGAG 59.492 57.895 0.00 0.00 0.00 3.35
1659 2134 5.047092 AGCATTTTTAGTTGGAGGTGGAATG 60.047 40.000 0.00 0.00 0.00 2.67
1774 2291 1.303236 CAGGGTCCATGTTTCCGCA 60.303 57.895 0.00 0.00 0.00 5.69
1790 2307 2.091541 CCGCATCAATTTGGTACCACT 58.908 47.619 16.04 1.57 0.00 4.00
1799 2316 5.815222 TCAATTTGGTACCACTATCATGTCG 59.185 40.000 16.04 0.00 0.00 4.35
1849 2366 4.870123 TGTCCTTTGTTGATCCAATTGG 57.130 40.909 19.08 19.08 0.00 3.16
1881 2398 4.441079 GCCGTCCTAGATTGCTTAGTGTTA 60.441 45.833 0.00 0.00 0.00 2.41
2063 2581 9.612620 CTCCATTTGACTTGTAGATTTTGTAAC 57.387 33.333 0.00 0.00 0.00 2.50
2082 2601 3.261818 ACATATACTCCCTCTGTCCCC 57.738 52.381 0.00 0.00 0.00 4.81
2089 2608 2.576648 ACTCCCTCTGTCCCCAAATAAC 59.423 50.000 0.00 0.00 0.00 1.89
2093 2612 3.610911 CCTCTGTCCCCAAATAACTGTC 58.389 50.000 0.00 0.00 0.00 3.51
2094 2613 3.009033 CCTCTGTCCCCAAATAACTGTCA 59.991 47.826 0.00 0.00 0.00 3.58
2131 2650 7.404139 AACTTTGTACTAAATCAGTGACGAC 57.596 36.000 0.00 0.00 38.24 4.34
2196 2715 3.681897 GTGTTGGTGATGAGCTAACAGAG 59.318 47.826 0.00 0.00 32.54 3.35
2285 2804 2.489073 GGAAGGCAGGTCAGGAAGAAAA 60.489 50.000 0.00 0.00 0.00 2.29
2330 2849 7.194112 TCATGAGGTATATTCCTTGTTCACA 57.806 36.000 1.98 0.00 38.02 3.58
2373 2892 7.707104 AGTACAGTTCACCATTTTCTTTTCTG 58.293 34.615 0.00 0.00 0.00 3.02
2507 3026 1.520342 GTCGAGGGATGCTGACTGC 60.520 63.158 0.00 0.00 43.25 4.40
3068 3587 6.042638 ACACTAGACAGCAAGTATTCACAT 57.957 37.500 0.00 0.00 0.00 3.21
3461 3980 0.244994 AGACTGTCAGCCATGTCGAC 59.755 55.000 9.11 9.11 34.92 4.20
3584 4103 2.783135 TCTGAAAACTGCAGGTCCATC 58.217 47.619 19.93 11.63 34.20 3.51
3707 4226 4.612259 CGCAAGAAAACAGGATCAGAGTTG 60.612 45.833 0.00 0.00 43.02 3.16
3708 4227 4.276926 GCAAGAAAACAGGATCAGAGTTGT 59.723 41.667 0.00 0.00 0.00 3.32
3728 4247 1.522580 GAACGGGATGCTCTCCAGC 60.523 63.158 7.98 0.00 46.98 4.85
3752 4271 1.133407 AGAATGTCGAACTCCGCTCTC 59.867 52.381 0.00 0.00 38.37 3.20
3830 4349 4.410400 CCGGAGCTGGTGAACCCC 62.410 72.222 0.00 0.00 34.29 4.95
3994 4513 2.584608 GGCCACACGCTGTATCCT 59.415 61.111 0.00 0.00 37.74 3.24
3995 4514 1.820581 GGCCACACGCTGTATCCTA 59.179 57.895 0.00 0.00 37.74 2.94
3996 4515 0.529992 GGCCACACGCTGTATCCTAC 60.530 60.000 0.00 0.00 37.74 3.18
3997 4516 0.460311 GCCACACGCTGTATCCTACT 59.540 55.000 0.00 0.00 0.00 2.57
3998 4517 1.536284 GCCACACGCTGTATCCTACTC 60.536 57.143 0.00 0.00 0.00 2.59
3999 4518 1.268589 CCACACGCTGTATCCTACTCG 60.269 57.143 0.00 0.00 0.00 4.18
4000 4519 1.400846 CACACGCTGTATCCTACTCGT 59.599 52.381 0.00 0.00 38.40 4.18
4032 4551 2.674796 AGGACGATCTTGCCTTGTAC 57.325 50.000 0.00 0.00 0.00 2.90
4033 4552 1.899814 AGGACGATCTTGCCTTGTACA 59.100 47.619 0.00 0.00 0.00 2.90
4034 4553 2.000447 GGACGATCTTGCCTTGTACAC 59.000 52.381 0.00 0.00 0.00 2.90
4035 4554 1.654105 GACGATCTTGCCTTGTACACG 59.346 52.381 0.00 0.00 0.00 4.49
4036 4555 0.999406 CGATCTTGCCTTGTACACGG 59.001 55.000 13.94 13.94 0.00 4.94
4037 4556 1.369625 GATCTTGCCTTGTACACGGG 58.630 55.000 19.17 13.88 0.00 5.28
4038 4557 0.035439 ATCTTGCCTTGTACACGGGG 60.035 55.000 19.17 11.55 0.00 5.73
4039 4558 1.072505 CTTGCCTTGTACACGGGGT 59.927 57.895 19.17 0.00 0.00 4.95
4054 4573 2.273449 GGTGGGTGCCTGATCTGG 59.727 66.667 14.07 14.07 0.00 3.86
4421 5116 2.687297 TCTGGATGCTGGAGCTATCTT 58.313 47.619 0.00 0.00 42.66 2.40
4422 5117 3.849527 TCTGGATGCTGGAGCTATCTTA 58.150 45.455 0.00 0.00 42.66 2.10
4423 5118 3.576118 TCTGGATGCTGGAGCTATCTTAC 59.424 47.826 0.00 0.00 42.66 2.34
4444 5139 5.791336 ACTATGTGAAAGTGTGAGACTCA 57.209 39.130 0.00 0.00 31.73 3.41
4464 5159 2.050350 CATCTGCACCCTTGGGCTG 61.050 63.158 5.46 4.93 0.00 4.85
4537 5234 3.879295 TCAGTCAGTTTTCTCTGCCAAAG 59.121 43.478 0.00 0.00 35.63 2.77
4538 5235 2.620585 AGTCAGTTTTCTCTGCCAAAGC 59.379 45.455 0.00 0.00 40.48 3.51
4539 5236 1.603802 TCAGTTTTCTCTGCCAAAGCG 59.396 47.619 0.00 0.00 44.31 4.68
4540 5237 0.312102 AGTTTTCTCTGCCAAAGCGC 59.688 50.000 0.00 0.00 44.31 5.92
4541 5238 0.998727 GTTTTCTCTGCCAAAGCGCG 60.999 55.000 0.00 0.00 44.31 6.86
4542 5239 1.163420 TTTTCTCTGCCAAAGCGCGA 61.163 50.000 12.10 0.00 44.31 5.87
4543 5240 1.163420 TTTCTCTGCCAAAGCGCGAA 61.163 50.000 12.10 0.00 44.31 4.70
4544 5241 1.568612 TTCTCTGCCAAAGCGCGAAG 61.569 55.000 12.10 0.00 44.31 3.79
4562 5259 2.270205 CTGAAGGCGGGACAGCAT 59.730 61.111 0.00 0.00 39.27 3.79
4563 5260 2.046023 TGAAGGCGGGACAGCATG 60.046 61.111 0.00 0.00 46.00 4.06
4564 5261 2.268920 GAAGGCGGGACAGCATGA 59.731 61.111 0.00 0.00 39.69 3.07
4565 5262 1.817099 GAAGGCGGGACAGCATGAG 60.817 63.158 0.00 0.00 39.69 2.90
4566 5263 3.335356 AAGGCGGGACAGCATGAGG 62.335 63.158 0.00 0.00 39.69 3.86
4567 5264 3.785859 GGCGGGACAGCATGAGGA 61.786 66.667 0.00 0.00 39.69 3.71
4568 5265 2.202987 GCGGGACAGCATGAGGAG 60.203 66.667 0.00 0.00 39.69 3.69
4569 5266 2.202987 CGGGACAGCATGAGGAGC 60.203 66.667 0.00 0.00 39.69 4.70
4570 5267 2.993008 GGGACAGCATGAGGAGCA 59.007 61.111 0.00 0.00 39.69 4.26
4571 5268 1.451028 GGGACAGCATGAGGAGCAC 60.451 63.158 0.00 0.00 39.69 4.40
4572 5269 1.451028 GGACAGCATGAGGAGCACC 60.451 63.158 0.00 0.00 39.69 5.01
4573 5270 1.812922 GACAGCATGAGGAGCACCG 60.813 63.158 0.00 0.00 39.69 4.94
4574 5271 2.513204 CAGCATGAGGAGCACCGG 60.513 66.667 0.00 0.00 39.69 5.28
4575 5272 4.479993 AGCATGAGGAGCACCGGC 62.480 66.667 0.00 0.00 41.83 6.13
4577 5274 4.100084 CATGAGGAGCACCGGCCA 62.100 66.667 0.00 0.00 42.56 5.36
4578 5275 4.101448 ATGAGGAGCACCGGCCAC 62.101 66.667 0.00 0.00 42.56 5.01
4580 5277 4.767255 GAGGAGCACCGGCCACAG 62.767 72.222 0.00 0.00 42.56 3.66
4615 5312 4.473520 CGAGTGGGAGCCGGCAAT 62.474 66.667 31.54 9.09 0.00 3.56
4616 5313 2.825836 GAGTGGGAGCCGGCAATG 60.826 66.667 31.54 0.00 0.00 2.82
4617 5314 4.431131 AGTGGGAGCCGGCAATGG 62.431 66.667 31.54 0.00 0.00 3.16
4627 5324 2.435938 GGCAATGGCGAGTCCGAA 60.436 61.111 0.00 0.00 42.47 4.30
4628 5325 2.038269 GGCAATGGCGAGTCCGAAA 61.038 57.895 0.00 0.00 42.47 3.46
4629 5326 1.134694 GCAATGGCGAGTCCGAAAC 59.865 57.895 0.00 0.00 38.22 2.78
4630 5327 1.298859 GCAATGGCGAGTCCGAAACT 61.299 55.000 0.00 0.00 42.42 2.66
4631 5328 1.156736 CAATGGCGAGTCCGAAACTT 58.843 50.000 0.00 0.00 38.74 2.66
4632 5329 2.343101 CAATGGCGAGTCCGAAACTTA 58.657 47.619 0.00 0.00 38.74 2.24
4633 5330 2.739913 CAATGGCGAGTCCGAAACTTAA 59.260 45.455 0.00 0.00 38.74 1.85
4634 5331 1.787012 TGGCGAGTCCGAAACTTAAC 58.213 50.000 0.00 0.00 38.74 2.01
4635 5332 1.073964 GGCGAGTCCGAAACTTAACC 58.926 55.000 0.00 0.00 38.74 2.85
4636 5333 1.606224 GGCGAGTCCGAAACTTAACCA 60.606 52.381 0.00 0.00 38.74 3.67
4637 5334 1.725164 GCGAGTCCGAAACTTAACCAG 59.275 52.381 0.00 0.00 38.74 4.00
4638 5335 2.334838 CGAGTCCGAAACTTAACCAGG 58.665 52.381 0.00 0.00 38.74 4.45
4639 5336 2.696506 GAGTCCGAAACTTAACCAGGG 58.303 52.381 0.00 0.00 38.74 4.45
4640 5337 1.350019 AGTCCGAAACTTAACCAGGGG 59.650 52.381 0.00 0.00 33.03 4.79
4641 5338 1.072806 GTCCGAAACTTAACCAGGGGT 59.927 52.381 0.00 0.00 37.65 4.95
4642 5339 1.072648 TCCGAAACTTAACCAGGGGTG 59.927 52.381 0.00 0.00 35.34 4.61
4643 5340 0.879090 CGAAACTTAACCAGGGGTGC 59.121 55.000 0.00 0.00 35.34 5.01
4644 5341 1.816183 CGAAACTTAACCAGGGGTGCA 60.816 52.381 0.00 0.00 35.34 4.57
4645 5342 1.886542 GAAACTTAACCAGGGGTGCAG 59.113 52.381 0.00 0.00 35.34 4.41
4646 5343 0.112412 AACTTAACCAGGGGTGCAGG 59.888 55.000 0.00 0.00 35.34 4.85
4647 5344 0.770557 ACTTAACCAGGGGTGCAGGA 60.771 55.000 0.00 0.00 35.34 3.86
4648 5345 0.035056 CTTAACCAGGGGTGCAGGAG 60.035 60.000 0.00 0.00 35.34 3.69
4649 5346 0.474854 TTAACCAGGGGTGCAGGAGA 60.475 55.000 0.00 0.00 35.34 3.71
4650 5347 0.909610 TAACCAGGGGTGCAGGAGAG 60.910 60.000 0.00 0.00 35.34 3.20
4651 5348 3.406200 CCAGGGGTGCAGGAGAGG 61.406 72.222 0.00 0.00 0.00 3.69
4652 5349 3.406200 CAGGGGTGCAGGAGAGGG 61.406 72.222 0.00 0.00 0.00 4.30
4687 5384 2.245159 CATCTGGGCGATGCTTAAGA 57.755 50.000 6.67 0.00 42.75 2.10
4688 5385 2.141517 CATCTGGGCGATGCTTAAGAG 58.858 52.381 6.67 0.00 42.75 2.85
4689 5386 0.465705 TCTGGGCGATGCTTAAGAGG 59.534 55.000 6.67 0.00 0.00 3.69
4690 5387 0.533755 CTGGGCGATGCTTAAGAGGG 60.534 60.000 6.67 0.00 0.00 4.30
4691 5388 0.980754 TGGGCGATGCTTAAGAGGGA 60.981 55.000 6.67 0.00 0.00 4.20
4692 5389 0.533085 GGGCGATGCTTAAGAGGGAC 60.533 60.000 6.67 0.00 0.00 4.46
4693 5390 0.876342 GGCGATGCTTAAGAGGGACG 60.876 60.000 6.67 5.29 0.00 4.79
4694 5391 0.876342 GCGATGCTTAAGAGGGACGG 60.876 60.000 6.67 0.00 0.00 4.79
4695 5392 0.460311 CGATGCTTAAGAGGGACGGT 59.540 55.000 6.67 0.00 0.00 4.83
4696 5393 1.802880 CGATGCTTAAGAGGGACGGTG 60.803 57.143 6.67 0.00 0.00 4.94
4697 5394 0.541863 ATGCTTAAGAGGGACGGTGG 59.458 55.000 6.67 0.00 0.00 4.61
4698 5395 1.449778 GCTTAAGAGGGACGGTGGC 60.450 63.158 6.67 0.00 0.00 5.01
4699 5396 1.221021 CTTAAGAGGGACGGTGGCC 59.779 63.158 0.00 0.00 0.00 5.36
4700 5397 1.536907 TTAAGAGGGACGGTGGCCA 60.537 57.895 0.00 0.00 0.00 5.36
4701 5398 1.128809 TTAAGAGGGACGGTGGCCAA 61.129 55.000 7.24 0.00 0.00 4.52
4719 5416 4.275508 CATGGCGATGGGGGAGGG 62.276 72.222 0.00 0.00 0.00 4.30
4737 5434 3.489513 GGGCGGCAGGTAGGGAAT 61.490 66.667 12.47 0.00 0.00 3.01
4738 5435 2.595655 GGCGGCAGGTAGGGAATT 59.404 61.111 3.07 0.00 0.00 2.17
4739 5436 1.702022 GGGCGGCAGGTAGGGAATTA 61.702 60.000 12.47 0.00 0.00 1.40
4740 5437 0.400594 GGCGGCAGGTAGGGAATTAT 59.599 55.000 3.07 0.00 0.00 1.28
4741 5438 1.523758 GCGGCAGGTAGGGAATTATG 58.476 55.000 0.00 0.00 0.00 1.90
4742 5439 1.882352 GCGGCAGGTAGGGAATTATGG 60.882 57.143 0.00 0.00 0.00 2.74
4743 5440 1.882352 CGGCAGGTAGGGAATTATGGC 60.882 57.143 0.00 0.00 0.00 4.40
4744 5441 1.425448 GGCAGGTAGGGAATTATGGCT 59.575 52.381 0.00 0.00 0.00 4.75
4745 5442 2.642807 GGCAGGTAGGGAATTATGGCTA 59.357 50.000 0.00 0.00 0.00 3.93
4746 5443 3.267031 GGCAGGTAGGGAATTATGGCTAT 59.733 47.826 0.00 0.00 0.00 2.97
4747 5444 4.473559 GGCAGGTAGGGAATTATGGCTATA 59.526 45.833 0.00 0.00 0.00 1.31
4748 5445 5.396884 GGCAGGTAGGGAATTATGGCTATAG 60.397 48.000 0.00 0.00 0.00 1.31
4749 5446 5.396884 GCAGGTAGGGAATTATGGCTATAGG 60.397 48.000 1.04 0.00 0.00 2.57
4750 5447 5.726793 CAGGTAGGGAATTATGGCTATAGGT 59.273 44.000 1.04 0.00 0.00 3.08
4751 5448 6.901300 CAGGTAGGGAATTATGGCTATAGGTA 59.099 42.308 1.04 0.00 0.00 3.08
4752 5449 7.070074 CAGGTAGGGAATTATGGCTATAGGTAG 59.930 44.444 1.04 0.00 0.00 3.18
4753 5450 6.326843 GGTAGGGAATTATGGCTATAGGTAGG 59.673 46.154 1.04 0.00 0.00 3.18
4760 5457 0.977395 GGCTATAGGTAGGCCACAGG 59.023 60.000 5.01 0.00 45.19 4.00
4761 5458 0.977395 GCTATAGGTAGGCCACAGGG 59.023 60.000 5.01 0.00 37.19 4.45
4762 5459 1.761735 GCTATAGGTAGGCCACAGGGT 60.762 57.143 5.01 0.00 37.19 4.34
4763 5460 2.492196 GCTATAGGTAGGCCACAGGGTA 60.492 54.545 5.01 0.00 37.19 3.69
4764 5461 2.400467 ATAGGTAGGCCACAGGGTAG 57.600 55.000 5.01 0.00 37.19 3.18
4765 5462 0.263765 TAGGTAGGCCACAGGGTAGG 59.736 60.000 5.01 0.00 37.19 3.18
4810 5507 3.876320 GAGGAAGAAGATGAACAGATGGC 59.124 47.826 0.00 0.00 0.00 4.40
4828 5525 2.031163 GGCGTGCTCCTGACAGTT 59.969 61.111 0.93 0.00 0.00 3.16
4830 5527 2.320587 GCGTGCTCCTGACAGTTGG 61.321 63.158 0.93 0.00 0.00 3.77
4831 5528 1.367471 CGTGCTCCTGACAGTTGGA 59.633 57.895 0.93 0.00 0.00 3.53
4833 5530 1.204704 CGTGCTCCTGACAGTTGGATA 59.795 52.381 0.93 0.00 0.00 2.59
4834 5531 2.159043 CGTGCTCCTGACAGTTGGATAT 60.159 50.000 0.93 0.00 0.00 1.63
4835 5532 3.679917 CGTGCTCCTGACAGTTGGATATT 60.680 47.826 0.93 0.00 0.00 1.28
4836 5533 3.624861 GTGCTCCTGACAGTTGGATATTG 59.375 47.826 0.93 0.00 0.00 1.90
4847 5546 6.294473 ACAGTTGGATATTGATCTGATGACC 58.706 40.000 0.00 0.00 32.15 4.02
4867 5566 3.706594 ACCAGAAAGAGAAGTGACTGACA 59.293 43.478 0.00 0.00 0.00 3.58
4868 5567 4.346418 ACCAGAAAGAGAAGTGACTGACAT 59.654 41.667 0.00 0.00 0.00 3.06
4870 5569 4.152045 CAGAAAGAGAAGTGACTGACATGC 59.848 45.833 0.00 0.00 0.00 4.06
4874 5573 3.260128 AGAGAAGTGACTGACATGCATCA 59.740 43.478 0.00 0.00 0.00 3.07
4877 5576 5.008331 AGAAGTGACTGACATGCATCATTT 58.992 37.500 0.00 0.00 0.00 2.32
4879 5578 5.717078 AGTGACTGACATGCATCATTTTT 57.283 34.783 0.00 0.00 0.00 1.94
4883 5582 5.068234 ACTGACATGCATCATTTTTCAGG 57.932 39.130 0.00 0.00 31.90 3.86
4905 5604 1.341679 ACCTCACGTATAGGTGCTCCA 60.342 52.381 18.38 3.16 45.78 3.86
4906 5605 1.067212 CCTCACGTATAGGTGCTCCAC 59.933 57.143 18.58 0.00 37.83 4.02
4907 5606 1.749063 CTCACGTATAGGTGCTCCACA 59.251 52.381 18.58 2.19 37.83 4.17
4908 5607 1.749063 TCACGTATAGGTGCTCCACAG 59.251 52.381 18.58 0.00 37.83 3.66
4909 5608 1.476891 CACGTATAGGTGCTCCACAGT 59.523 52.381 12.28 0.00 35.86 3.55
4910 5609 2.686405 CACGTATAGGTGCTCCACAGTA 59.314 50.000 12.28 0.00 35.86 2.74
4911 5610 2.950309 ACGTATAGGTGCTCCACAGTAG 59.050 50.000 7.70 0.00 35.86 2.57
4912 5611 3.211865 CGTATAGGTGCTCCACAGTAGA 58.788 50.000 7.70 0.00 35.86 2.59
4913 5612 3.821600 CGTATAGGTGCTCCACAGTAGAT 59.178 47.826 7.70 0.00 35.86 1.98
4914 5613 4.320567 CGTATAGGTGCTCCACAGTAGATG 60.321 50.000 7.70 0.00 35.86 2.90
4915 5614 2.238084 AGGTGCTCCACAGTAGATGA 57.762 50.000 7.70 0.00 35.86 2.92
4916 5615 1.827969 AGGTGCTCCACAGTAGATGAC 59.172 52.381 7.70 0.00 35.86 3.06
4917 5616 1.134670 GGTGCTCCACAGTAGATGACC 60.135 57.143 0.00 0.00 35.86 4.02
4918 5617 1.134670 GTGCTCCACAGTAGATGACCC 60.135 57.143 0.00 0.00 34.08 4.46
4919 5618 0.466124 GCTCCACAGTAGATGACCCC 59.534 60.000 0.00 0.00 0.00 4.95
4920 5619 0.747255 CTCCACAGTAGATGACCCCG 59.253 60.000 0.00 0.00 0.00 5.73
4921 5620 0.040646 TCCACAGTAGATGACCCCGT 59.959 55.000 0.00 0.00 0.00 5.28
4922 5621 0.175760 CCACAGTAGATGACCCCGTG 59.824 60.000 0.00 0.00 0.00 4.94
4923 5622 1.182667 CACAGTAGATGACCCCGTGA 58.817 55.000 0.00 0.00 0.00 4.35
4924 5623 1.135083 CACAGTAGATGACCCCGTGAC 60.135 57.143 0.00 0.00 0.00 3.67
4925 5624 1.272536 ACAGTAGATGACCCCGTGACT 60.273 52.381 0.00 0.00 0.00 3.41
4926 5625 1.825474 CAGTAGATGACCCCGTGACTT 59.175 52.381 0.00 0.00 0.00 3.01
4927 5626 2.100989 AGTAGATGACCCCGTGACTTC 58.899 52.381 0.00 0.00 0.00 3.01
4928 5627 1.100510 TAGATGACCCCGTGACTTCG 58.899 55.000 0.00 0.00 0.00 3.79
4929 5628 1.810030 GATGACCCCGTGACTTCGC 60.810 63.158 0.00 0.00 0.00 4.70
4930 5629 2.501223 GATGACCCCGTGACTTCGCA 62.501 60.000 0.00 0.00 0.00 5.10
4931 5630 1.899437 ATGACCCCGTGACTTCGCAT 61.899 55.000 0.00 0.00 0.00 4.73
4932 5631 1.375523 GACCCCGTGACTTCGCATT 60.376 57.895 0.00 0.00 0.00 3.56
4933 5632 1.635663 GACCCCGTGACTTCGCATTG 61.636 60.000 0.00 0.00 0.00 2.82
4934 5633 1.375396 CCCCGTGACTTCGCATTGA 60.375 57.895 0.00 0.00 0.00 2.57
4935 5634 1.635663 CCCCGTGACTTCGCATTGAC 61.636 60.000 0.00 0.00 0.00 3.18
4936 5635 0.670546 CCCGTGACTTCGCATTGACT 60.671 55.000 0.00 0.00 0.00 3.41
4937 5636 1.403647 CCCGTGACTTCGCATTGACTA 60.404 52.381 0.00 0.00 0.00 2.59
4938 5637 2.540515 CCGTGACTTCGCATTGACTAT 58.459 47.619 0.00 0.00 0.00 2.12
4939 5638 3.490249 CCCGTGACTTCGCATTGACTATA 60.490 47.826 0.00 0.00 0.00 1.31
4940 5639 3.486108 CCGTGACTTCGCATTGACTATAC 59.514 47.826 0.00 0.00 0.00 1.47
4941 5640 3.177838 CGTGACTTCGCATTGACTATACG 59.822 47.826 0.00 0.00 0.00 3.06
4942 5641 3.061139 GTGACTTCGCATTGACTATACGC 60.061 47.826 0.00 0.00 0.00 4.42
4943 5642 3.181490 TGACTTCGCATTGACTATACGCT 60.181 43.478 0.00 0.00 0.00 5.07
4944 5643 3.782046 ACTTCGCATTGACTATACGCTT 58.218 40.909 0.00 0.00 0.00 4.68
4945 5644 4.181578 ACTTCGCATTGACTATACGCTTT 58.818 39.130 0.00 0.00 0.00 3.51
4946 5645 4.267928 ACTTCGCATTGACTATACGCTTTC 59.732 41.667 0.00 0.00 0.00 2.62
4947 5646 4.041740 TCGCATTGACTATACGCTTTCT 57.958 40.909 0.00 0.00 0.00 2.52
4948 5647 3.796717 TCGCATTGACTATACGCTTTCTG 59.203 43.478 0.00 0.00 0.00 3.02
4949 5648 3.551890 CGCATTGACTATACGCTTTCTGT 59.448 43.478 0.00 0.00 0.00 3.41
4950 5649 4.738252 CGCATTGACTATACGCTTTCTGTA 59.262 41.667 0.00 0.00 0.00 2.74
4951 5650 5.108217 CGCATTGACTATACGCTTTCTGTAG 60.108 44.000 0.00 0.00 0.00 2.74
4952 5651 5.749109 GCATTGACTATACGCTTTCTGTAGT 59.251 40.000 0.00 0.00 0.00 2.73
4953 5652 6.255887 GCATTGACTATACGCTTTCTGTAGTT 59.744 38.462 0.00 0.00 0.00 2.24
4954 5653 7.201530 GCATTGACTATACGCTTTCTGTAGTTT 60.202 37.037 0.00 0.00 0.00 2.66
4955 5654 8.656849 CATTGACTATACGCTTTCTGTAGTTTT 58.343 33.333 0.00 0.00 0.00 2.43
4956 5655 7.576750 TGACTATACGCTTTCTGTAGTTTTG 57.423 36.000 0.00 0.00 0.00 2.44
4957 5656 6.090358 TGACTATACGCTTTCTGTAGTTTTGC 59.910 38.462 0.00 0.00 0.00 3.68
4958 5657 6.164176 ACTATACGCTTTCTGTAGTTTTGCT 58.836 36.000 0.00 0.00 0.00 3.91
4959 5658 3.609103 ACGCTTTCTGTAGTTTTGCTG 57.391 42.857 0.00 0.00 0.00 4.41
4960 5659 3.202906 ACGCTTTCTGTAGTTTTGCTGA 58.797 40.909 0.00 0.00 0.00 4.26
4961 5660 3.002348 ACGCTTTCTGTAGTTTTGCTGAC 59.998 43.478 0.00 0.00 0.00 3.51
4962 5661 3.002246 CGCTTTCTGTAGTTTTGCTGACA 59.998 43.478 0.00 0.00 0.00 3.58
4963 5662 4.531332 GCTTTCTGTAGTTTTGCTGACAG 58.469 43.478 0.00 0.00 40.56 3.51
4964 5663 4.273480 GCTTTCTGTAGTTTTGCTGACAGA 59.727 41.667 6.65 0.00 44.95 3.41
4965 5664 5.049129 GCTTTCTGTAGTTTTGCTGACAGAT 60.049 40.000 6.65 0.00 45.67 2.90
4966 5665 5.929697 TTCTGTAGTTTTGCTGACAGATG 57.070 39.130 6.65 0.00 45.67 2.90
4967 5666 5.213891 TCTGTAGTTTTGCTGACAGATGA 57.786 39.130 6.65 0.00 42.51 2.92
4968 5667 5.798132 TCTGTAGTTTTGCTGACAGATGAT 58.202 37.500 6.65 0.00 42.51 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.498056 GGCCAACACAACAGTGGGG 61.498 63.158 0.00 2.90 37.58 4.96
1 2 1.756172 TGGCCAACACAACAGTGGG 60.756 57.895 0.61 0.00 37.58 4.61
2 3 3.932009 TGGCCAACACAACAGTGG 58.068 55.556 0.61 0.00 37.58 4.00
10 11 1.454847 TCAAGGTGGTGGCCAACAC 60.455 57.895 40.62 40.62 45.07 3.32
11 12 1.454847 GTCAAGGTGGTGGCCAACA 60.455 57.895 22.71 22.71 45.07 3.33
12 13 2.200337 GGTCAAGGTGGTGGCCAAC 61.200 63.158 15.99 15.99 43.22 3.77
13 14 2.197324 GGTCAAGGTGGTGGCCAA 59.803 61.111 7.24 0.00 43.22 4.52
18 19 0.035056 GAGGGATGGTCAAGGTGGTG 60.035 60.000 0.00 0.00 0.00 4.17
23 24 1.141858 GGCTTAGAGGGATGGTCAAGG 59.858 57.143 0.00 0.00 0.00 3.61
26 27 0.343372 AGGGCTTAGAGGGATGGTCA 59.657 55.000 0.00 0.00 0.00 4.02
52 53 1.663702 GGTCACCGGAGTTGTCGTG 60.664 63.158 9.46 0.00 0.00 4.35
53 54 2.129146 TGGTCACCGGAGTTGTCGT 61.129 57.895 9.46 0.00 0.00 4.34
55 56 1.301479 GGTGGTCACCGGAGTTGTC 60.301 63.158 9.46 0.00 42.29 3.18
65 66 1.208165 AGAAGGGATGGGGTGGTCAC 61.208 60.000 0.00 0.00 0.00 3.67
77 78 1.003580 GTGCAGGTTGATGAGAAGGGA 59.996 52.381 0.00 0.00 0.00 4.20
78 79 1.457346 GTGCAGGTTGATGAGAAGGG 58.543 55.000 0.00 0.00 0.00 3.95
81 82 0.321564 CGGGTGCAGGTTGATGAGAA 60.322 55.000 0.00 0.00 0.00 2.87
84 85 1.003839 GACGGGTGCAGGTTGATGA 60.004 57.895 0.00 0.00 0.00 2.92
88 89 1.101049 AACTTGACGGGTGCAGGTTG 61.101 55.000 0.00 0.00 34.77 3.77
89 90 0.395173 AAACTTGACGGGTGCAGGTT 60.395 50.000 0.00 0.00 37.18 3.50
116 117 1.018148 CGACGATAGCTGACAGGAGT 58.982 55.000 4.26 0.00 42.67 3.85
154 155 2.981302 TGAGCATCACCAGGGACG 59.019 61.111 0.00 0.00 42.56 4.79
201 203 2.489938 TCATCAAGTCCCCTTTTCGG 57.510 50.000 0.00 0.00 0.00 4.30
202 204 4.035675 GCTAATCATCAAGTCCCCTTTTCG 59.964 45.833 0.00 0.00 0.00 3.46
203 205 4.949856 TGCTAATCATCAAGTCCCCTTTTC 59.050 41.667 0.00 0.00 0.00 2.29
210 212 4.035558 TCGCATTTGCTAATCATCAAGTCC 59.964 41.667 0.51 0.00 39.32 3.85
238 269 2.094752 GTGTGCGCCCAACTAATTGAAT 60.095 45.455 4.18 0.00 38.15 2.57
239 270 1.268352 GTGTGCGCCCAACTAATTGAA 59.732 47.619 4.18 0.00 38.15 2.69
240 271 0.878416 GTGTGCGCCCAACTAATTGA 59.122 50.000 4.18 0.00 38.15 2.57
245 276 2.345991 GAGGTGTGCGCCCAACTA 59.654 61.111 11.37 0.00 30.90 2.24
278 309 6.093495 ACGACTTTTCACAATGTACCATATGG 59.907 38.462 20.68 20.68 42.17 2.74
279 310 7.072177 ACGACTTTTCACAATGTACCATATG 57.928 36.000 0.00 0.00 0.00 1.78
296 327 6.472163 CAGTTCACAAATTTTGCTACGACTTT 59.528 34.615 9.04 0.00 0.00 2.66
319 350 7.204604 TGCATATTAAATTTGACCTCATGCAG 58.795 34.615 14.19 0.00 40.75 4.41
335 366 9.411801 TCGCAAAACAAAAACTATGCATATTAA 57.588 25.926 6.92 0.00 33.55 1.40
353 384 9.931710 GTACACATACAAAAATATTCGCAAAAC 57.068 29.630 0.00 0.00 0.00 2.43
381 412 0.389948 GGCGAGGGATTATGGTAGCG 60.390 60.000 0.00 0.00 0.00 4.26
401 432 7.148918 CGTGTGCTAAGAAAAAGAATGGAAATG 60.149 37.037 0.00 0.00 0.00 2.32
552 609 5.592282 TGAGCTGTTTGGATAAAAGACACAA 59.408 36.000 0.00 0.00 0.00 3.33
556 613 6.319141 AGTTGAGCTGTTTGGATAAAAGAC 57.681 37.500 0.00 0.00 0.00 3.01
558 615 8.017946 GTCTAAGTTGAGCTGTTTGGATAAAAG 58.982 37.037 0.00 0.00 0.00 2.27
578 638 5.534654 TGGGTTGAGTCAAAAATGGTCTAAG 59.465 40.000 7.25 0.00 0.00 2.18
582 642 4.664150 TTGGGTTGAGTCAAAAATGGTC 57.336 40.909 7.25 0.00 0.00 4.02
583 643 5.428184 TTTTGGGTTGAGTCAAAAATGGT 57.572 34.783 7.25 0.00 39.13 3.55
591 651 5.415221 GTGAAATGTTTTTGGGTTGAGTCA 58.585 37.500 0.00 0.00 0.00 3.41
592 652 4.808895 GGTGAAATGTTTTTGGGTTGAGTC 59.191 41.667 0.00 0.00 0.00 3.36
606 666 2.297033 GTGGCTTGTGATGGTGAAATGT 59.703 45.455 0.00 0.00 0.00 2.71
638 706 4.944930 CGTGGATTTGGTAGTAATTTGGGA 59.055 41.667 0.00 0.00 0.00 4.37
639 707 4.944930 TCGTGGATTTGGTAGTAATTTGGG 59.055 41.667 0.00 0.00 0.00 4.12
640 708 5.878116 TCTCGTGGATTTGGTAGTAATTTGG 59.122 40.000 0.00 0.00 0.00 3.28
642 710 6.942976 TCTCTCGTGGATTTGGTAGTAATTT 58.057 36.000 0.00 0.00 0.00 1.82
645 713 5.713389 TCTTCTCTCGTGGATTTGGTAGTAA 59.287 40.000 0.00 0.00 0.00 2.24
646 714 5.258841 TCTTCTCTCGTGGATTTGGTAGTA 58.741 41.667 0.00 0.00 0.00 1.82
647 715 4.087182 TCTTCTCTCGTGGATTTGGTAGT 58.913 43.478 0.00 0.00 0.00 2.73
648 716 4.399618 TCTCTTCTCTCGTGGATTTGGTAG 59.600 45.833 0.00 0.00 0.00 3.18
661 729 7.029563 TGTTTTGCTTTTGTTTCTCTTCTCTC 58.970 34.615 0.00 0.00 0.00 3.20
666 734 7.607607 AGGATTTGTTTTGCTTTTGTTTCTCTT 59.392 29.630 0.00 0.00 0.00 2.85
670 738 6.966632 GGAAGGATTTGTTTTGCTTTTGTTTC 59.033 34.615 0.00 0.00 0.00 2.78
681 749 6.044171 TGGAATGGAATGGAAGGATTTGTTTT 59.956 34.615 0.00 0.00 0.00 2.43
725 793 0.999712 GTGGGATGAGGGAAAAGGGA 59.000 55.000 0.00 0.00 0.00 4.20
736 804 1.596934 GCTGGAGAACGTGGGATGA 59.403 57.895 0.00 0.00 0.00 2.92
817 885 1.467342 GGTGGTTTTGATACGACTGGC 59.533 52.381 0.00 0.00 0.00 4.85
879 960 1.395826 GGGCGAGATCCAGTACTGCT 61.396 60.000 17.86 9.24 0.00 4.24
880 961 1.068250 GGGCGAGATCCAGTACTGC 59.932 63.158 17.86 3.90 0.00 4.40
881 962 1.360551 CGGGCGAGATCCAGTACTG 59.639 63.158 16.34 16.34 0.00 2.74
882 963 2.491022 GCGGGCGAGATCCAGTACT 61.491 63.158 0.00 0.00 0.00 2.73
1361 1790 4.068282 CAGCACAGACGCACGCAG 62.068 66.667 0.00 0.00 0.00 5.18
1451 1885 0.531974 GACAGAGCACCAAACGACCA 60.532 55.000 0.00 0.00 0.00 4.02
1472 1906 5.979517 CAGCTCAAAACTTGTAGAAAAAGGG 59.020 40.000 0.00 0.00 0.00 3.95
1534 2008 2.513897 GGCACCCGATTCCCTTCG 60.514 66.667 0.00 0.00 38.83 3.79
1550 2024 1.067706 TGACAAAATTCGCAGCCATGG 60.068 47.619 7.63 7.63 0.00 3.66
1551 2025 1.987770 GTGACAAAATTCGCAGCCATG 59.012 47.619 0.00 0.00 0.00 3.66
1556 2030 5.914635 AGTAACATTGTGACAAAATTCGCAG 59.085 36.000 0.62 0.00 37.32 5.18
1609 2084 0.802494 CAAAATGGTCCCTTCGTCCG 59.198 55.000 0.00 0.00 0.00 4.79
1623 2098 2.460757 AAAATGCTCAGCGGCAAAAT 57.539 40.000 1.45 0.00 45.68 1.82
1625 2100 2.295909 ACTAAAAATGCTCAGCGGCAAA 59.704 40.909 1.45 0.00 45.68 3.68
1636 2111 4.864704 TTCCACCTCCAACTAAAAATGC 57.135 40.909 0.00 0.00 0.00 3.56
1774 2291 6.483307 CGACATGATAGTGGTACCAAATTGAT 59.517 38.462 18.31 5.58 0.00 2.57
1790 2307 9.621629 AAATCTAACATAAAACCCGACATGATA 57.378 29.630 0.00 0.00 0.00 2.15
1799 2316 7.547227 ACATGCTCAAATCTAACATAAAACCC 58.453 34.615 0.00 0.00 0.00 4.11
1849 2366 2.890808 TCTAGGACGGCAATGATCAC 57.109 50.000 0.00 0.00 0.00 3.06
1881 2398 3.307059 GCCCGATTAATGGAGATACAGCT 60.307 47.826 0.00 0.00 0.00 4.24
2063 2581 3.260269 TGGGGACAGAGGGAGTATATG 57.740 52.381 0.00 0.00 35.01 1.78
2066 2584 2.661176 TTTGGGGACAGAGGGAGTAT 57.339 50.000 0.00 0.00 44.54 2.12
2074 2593 3.244770 GGTGACAGTTATTTGGGGACAGA 60.245 47.826 0.00 0.00 44.54 3.41
2129 2648 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2130 2649 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2131 2650 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2196 2715 3.211045 TCGGGTTAGGCTGCAAATTATC 58.789 45.455 0.50 0.00 0.00 1.75
2285 2804 2.281761 CTGCCGTTGCCAAGAGGT 60.282 61.111 1.51 0.00 37.19 3.85
2341 2860 8.211629 AGAAAATGGTGAACTGTACTCTTAAGT 58.788 33.333 1.63 0.00 39.66 2.24
2342 2861 8.608844 AGAAAATGGTGAACTGTACTCTTAAG 57.391 34.615 0.00 0.00 0.00 1.85
2343 2862 8.974060 AAGAAAATGGTGAACTGTACTCTTAA 57.026 30.769 0.00 0.00 0.00 1.85
2344 2863 8.974060 AAAGAAAATGGTGAACTGTACTCTTA 57.026 30.769 0.00 0.00 0.00 2.10
2507 3026 5.050490 ACTGGATAACGATCAAAGGAATCG 58.950 41.667 4.13 4.13 42.81 3.34
3227 3746 5.886960 ATACAGCAAAAATGTCCTCTGAC 57.113 39.130 0.00 0.00 42.12 3.51
3506 4025 0.250295 TTCCTCCACAGAAGCCGTTG 60.250 55.000 0.00 0.00 0.00 4.10
3542 4061 4.394078 TCGTCGCAGTCCGTTCCG 62.394 66.667 0.00 0.00 38.35 4.30
3584 4103 2.054363 CATACTTCGCTGATACCGCTG 58.946 52.381 0.00 0.00 0.00 5.18
3707 4226 2.768834 GGAGAGCATCCCGTTCAAC 58.231 57.895 0.00 0.00 43.01 3.18
3728 4247 1.413767 CGGAGTTCGACATTCTGCCG 61.414 60.000 0.00 0.00 42.43 5.69
3761 4280 3.710722 ACCTCGCTGCCCTTCAGG 61.711 66.667 0.00 0.00 43.06 3.86
3994 4513 8.837788 TCGTCCTATATTCAGAAATACGAGTA 57.162 34.615 0.00 0.00 30.27 2.59
3995 4514 7.741027 TCGTCCTATATTCAGAAATACGAGT 57.259 36.000 0.00 0.00 30.27 4.18
3996 4515 8.670135 AGATCGTCCTATATTCAGAAATACGAG 58.330 37.037 0.00 0.00 29.78 4.18
3997 4516 8.563123 AGATCGTCCTATATTCAGAAATACGA 57.437 34.615 0.00 0.00 30.27 3.43
3998 4517 9.066939 CAAGATCGTCCTATATTCAGAAATACG 57.933 37.037 0.00 0.00 30.27 3.06
3999 4518 8.865001 GCAAGATCGTCCTATATTCAGAAATAC 58.135 37.037 0.00 0.00 30.27 1.89
4000 4519 8.035394 GGCAAGATCGTCCTATATTCAGAAATA 58.965 37.037 0.00 0.00 0.00 1.40
4034 4553 4.489771 GATCAGGCACCCACCCCG 62.490 72.222 0.00 0.00 0.00 5.73
4035 4554 3.017581 AGATCAGGCACCCACCCC 61.018 66.667 0.00 0.00 0.00 4.95
4036 4555 2.273449 CAGATCAGGCACCCACCC 59.727 66.667 0.00 0.00 0.00 4.61
4037 4556 1.852157 TTCCAGATCAGGCACCCACC 61.852 60.000 0.00 0.00 0.00 4.61
4038 4557 0.393537 CTTCCAGATCAGGCACCCAC 60.394 60.000 0.00 0.00 0.00 4.61
4039 4558 0.547471 TCTTCCAGATCAGGCACCCA 60.547 55.000 0.00 0.00 0.00 4.51
4049 4568 7.684529 ACTACAAGTGATTTCTTCTTCCAGAT 58.315 34.615 0.00 0.00 0.00 2.90
4207 4727 3.722147 AGAGACATGCCTAAGTAATGCG 58.278 45.455 0.00 0.00 0.00 4.73
4238 4758 2.029844 GACAGAAGCAGCCACGGTC 61.030 63.158 4.57 4.57 0.00 4.79
4239 4759 2.031163 GACAGAAGCAGCCACGGT 59.969 61.111 0.00 0.00 0.00 4.83
4240 4762 2.031516 CAGACAGAAGCAGCCACGG 61.032 63.158 0.00 0.00 0.00 4.94
4241 4763 0.882042 AACAGACAGAAGCAGCCACG 60.882 55.000 0.00 0.00 0.00 4.94
4421 5116 6.894339 TGAGTCTCACACTTTCACATAGTA 57.106 37.500 0.00 0.00 34.41 1.82
4422 5117 5.791336 TGAGTCTCACACTTTCACATAGT 57.209 39.130 0.00 0.00 34.41 2.12
4423 5118 6.393171 TGATGAGTCTCACACTTTCACATAG 58.607 40.000 4.21 0.00 34.41 2.23
4444 5139 1.076485 GCCCAAGGGTGCAGATGAT 60.076 57.895 7.05 0.00 37.65 2.45
4464 5159 5.616488 TTTAGCAAAACCGAATACTCCAC 57.384 39.130 0.00 0.00 0.00 4.02
4539 5236 4.760047 TCCCGCCTTCAGCTTCGC 62.760 66.667 0.00 0.00 40.39 4.70
4540 5237 2.815647 GTCCCGCCTTCAGCTTCG 60.816 66.667 0.00 0.00 40.39 3.79
4541 5238 1.743252 CTGTCCCGCCTTCAGCTTC 60.743 63.158 0.00 0.00 40.39 3.86
4542 5239 2.348998 CTGTCCCGCCTTCAGCTT 59.651 61.111 0.00 0.00 40.39 3.74
4545 5242 2.110967 CATGCTGTCCCGCCTTCAG 61.111 63.158 0.00 0.00 0.00 3.02
4546 5243 2.046023 CATGCTGTCCCGCCTTCA 60.046 61.111 0.00 0.00 0.00 3.02
4547 5244 1.817099 CTCATGCTGTCCCGCCTTC 60.817 63.158 0.00 0.00 0.00 3.46
4548 5245 2.270205 CTCATGCTGTCCCGCCTT 59.730 61.111 0.00 0.00 0.00 4.35
4549 5246 3.790437 CCTCATGCTGTCCCGCCT 61.790 66.667 0.00 0.00 0.00 5.52
4550 5247 3.746949 CTCCTCATGCTGTCCCGCC 62.747 68.421 0.00 0.00 0.00 6.13
4551 5248 2.202987 CTCCTCATGCTGTCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
4552 5249 2.202987 GCTCCTCATGCTGTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
4553 5250 1.451028 GTGCTCCTCATGCTGTCCC 60.451 63.158 0.00 0.00 0.00 4.46
4554 5251 1.451028 GGTGCTCCTCATGCTGTCC 60.451 63.158 0.00 0.00 0.00 4.02
4555 5252 1.812922 CGGTGCTCCTCATGCTGTC 60.813 63.158 2.85 0.00 0.00 3.51
4556 5253 2.267006 CGGTGCTCCTCATGCTGT 59.733 61.111 2.85 0.00 0.00 4.40
4557 5254 2.513204 CCGGTGCTCCTCATGCTG 60.513 66.667 2.85 0.00 0.00 4.41
4558 5255 4.479993 GCCGGTGCTCCTCATGCT 62.480 66.667 1.90 0.00 33.53 3.79
4560 5257 4.100084 TGGCCGGTGCTCCTCATG 62.100 66.667 1.90 0.00 37.74 3.07
4561 5258 4.101448 GTGGCCGGTGCTCCTCAT 62.101 66.667 1.90 0.00 37.74 2.90
4563 5260 4.767255 CTGTGGCCGGTGCTCCTC 62.767 72.222 1.90 0.00 37.74 3.71
4598 5295 4.473520 ATTGCCGGCTCCCACTCG 62.474 66.667 29.70 0.00 0.00 4.18
4599 5296 2.825836 CATTGCCGGCTCCCACTC 60.826 66.667 29.70 0.00 0.00 3.51
4600 5297 4.431131 CCATTGCCGGCTCCCACT 62.431 66.667 29.70 0.00 0.00 4.00
4609 5306 4.812476 TCGGACTCGCCATTGCCG 62.812 66.667 0.00 0.00 43.11 5.69
4610 5307 2.038269 TTTCGGACTCGCCATTGCC 61.038 57.895 0.00 0.00 35.94 4.52
4611 5308 1.134694 GTTTCGGACTCGCCATTGC 59.865 57.895 0.00 0.00 35.94 3.56
4612 5309 1.156736 AAGTTTCGGACTCGCCATTG 58.843 50.000 0.00 0.00 37.72 2.82
4613 5310 2.740447 GTTAAGTTTCGGACTCGCCATT 59.260 45.455 0.00 0.00 37.72 3.16
4614 5311 2.344025 GTTAAGTTTCGGACTCGCCAT 58.656 47.619 0.00 0.00 37.72 4.40
4615 5312 1.606224 GGTTAAGTTTCGGACTCGCCA 60.606 52.381 0.00 0.00 37.72 5.69
4616 5313 1.073964 GGTTAAGTTTCGGACTCGCC 58.926 55.000 0.00 0.00 37.72 5.54
4617 5314 1.725164 CTGGTTAAGTTTCGGACTCGC 59.275 52.381 0.00 0.00 37.72 5.03
4618 5315 2.334838 CCTGGTTAAGTTTCGGACTCG 58.665 52.381 0.00 0.00 37.72 4.18
4619 5316 2.614734 CCCCTGGTTAAGTTTCGGACTC 60.615 54.545 0.00 0.00 37.72 3.36
4620 5317 1.350019 CCCCTGGTTAAGTTTCGGACT 59.650 52.381 0.00 0.00 41.47 3.85
4621 5318 1.072806 ACCCCTGGTTAAGTTTCGGAC 59.927 52.381 0.00 0.00 27.29 4.79
4622 5319 1.072648 CACCCCTGGTTAAGTTTCGGA 59.927 52.381 0.00 0.00 31.02 4.55
4623 5320 1.530323 CACCCCTGGTTAAGTTTCGG 58.470 55.000 0.00 0.00 31.02 4.30
4624 5321 0.879090 GCACCCCTGGTTAAGTTTCG 59.121 55.000 0.00 0.00 31.02 3.46
4625 5322 1.886542 CTGCACCCCTGGTTAAGTTTC 59.113 52.381 0.00 0.00 31.02 2.78
4626 5323 1.480498 CCTGCACCCCTGGTTAAGTTT 60.480 52.381 0.00 0.00 31.02 2.66
4627 5324 0.112412 CCTGCACCCCTGGTTAAGTT 59.888 55.000 0.00 0.00 31.02 2.66
4628 5325 0.770557 TCCTGCACCCCTGGTTAAGT 60.771 55.000 0.00 0.00 31.02 2.24
4629 5326 0.035056 CTCCTGCACCCCTGGTTAAG 60.035 60.000 0.00 0.00 31.02 1.85
4630 5327 0.474854 TCTCCTGCACCCCTGGTTAA 60.475 55.000 0.00 0.00 31.02 2.01
4631 5328 0.909610 CTCTCCTGCACCCCTGGTTA 60.910 60.000 0.00 0.00 31.02 2.85
4632 5329 2.121963 TCTCCTGCACCCCTGGTT 60.122 61.111 0.00 0.00 31.02 3.67
4633 5330 2.608988 CTCTCCTGCACCCCTGGT 60.609 66.667 0.00 0.00 35.62 4.00
4634 5331 3.406200 CCTCTCCTGCACCCCTGG 61.406 72.222 0.00 0.00 0.00 4.45
4635 5332 3.406200 CCCTCTCCTGCACCCCTG 61.406 72.222 0.00 0.00 0.00 4.45
4636 5333 4.748798 CCCCTCTCCTGCACCCCT 62.749 72.222 0.00 0.00 0.00 4.79
4639 5336 4.106925 CAGCCCCTCTCCTGCACC 62.107 72.222 0.00 0.00 0.00 5.01
4652 5349 3.628646 ATGAACACCTCCGGCAGCC 62.629 63.158 0.00 0.00 0.00 4.85
4683 5380 1.536907 TTGGCCACCGTCCCTCTTA 60.537 57.895 3.88 0.00 0.00 2.10
4684 5381 2.852075 TTGGCCACCGTCCCTCTT 60.852 61.111 3.88 0.00 0.00 2.85
4685 5382 3.637273 GTTGGCCACCGTCCCTCT 61.637 66.667 3.88 0.00 0.00 3.69
4686 5383 3.268103 ATGTTGGCCACCGTCCCTC 62.268 63.158 3.88 0.00 0.00 4.30
4687 5384 3.256960 ATGTTGGCCACCGTCCCT 61.257 61.111 3.88 0.00 0.00 4.20
4688 5385 3.061848 CATGTTGGCCACCGTCCC 61.062 66.667 3.88 0.00 0.00 4.46
4689 5386 3.061848 CCATGTTGGCCACCGTCC 61.062 66.667 3.88 0.00 0.00 4.79
4698 5395 2.834505 CCCCCATCGCCATGTTGG 60.835 66.667 0.00 0.00 41.55 3.77
4699 5396 1.825191 CTCCCCCATCGCCATGTTG 60.825 63.158 0.00 0.00 0.00 3.33
4700 5397 2.597340 CTCCCCCATCGCCATGTT 59.403 61.111 0.00 0.00 0.00 2.71
4701 5398 3.492353 CCTCCCCCATCGCCATGT 61.492 66.667 0.00 0.00 0.00 3.21
4720 5417 1.702022 TAATTCCCTACCTGCCGCCC 61.702 60.000 0.00 0.00 0.00 6.13
4723 5420 1.882352 GCCATAATTCCCTACCTGCCG 60.882 57.143 0.00 0.00 0.00 5.69
4724 5421 1.425448 AGCCATAATTCCCTACCTGCC 59.575 52.381 0.00 0.00 0.00 4.85
4726 5423 5.726793 ACCTATAGCCATAATTCCCTACCTG 59.273 44.000 0.00 0.00 0.00 4.00
4727 5424 5.928656 ACCTATAGCCATAATTCCCTACCT 58.071 41.667 0.00 0.00 0.00 3.08
4728 5425 6.326843 CCTACCTATAGCCATAATTCCCTACC 59.673 46.154 0.00 0.00 0.00 3.18
4729 5426 6.183360 GCCTACCTATAGCCATAATTCCCTAC 60.183 46.154 0.00 0.00 0.00 3.18
4730 5427 5.903589 GCCTACCTATAGCCATAATTCCCTA 59.096 44.000 0.00 0.00 0.00 3.53
4731 5428 4.722279 GCCTACCTATAGCCATAATTCCCT 59.278 45.833 0.00 0.00 0.00 4.20
4732 5429 4.141459 GGCCTACCTATAGCCATAATTCCC 60.141 50.000 0.00 0.00 0.00 3.97
4733 5430 4.473559 TGGCCTACCTATAGCCATAATTCC 59.526 45.833 3.32 0.00 32.76 3.01
4734 5431 5.045869 TGTGGCCTACCTATAGCCATAATTC 60.046 44.000 3.32 0.00 37.13 2.17
4735 5432 4.849810 TGTGGCCTACCTATAGCCATAATT 59.150 41.667 3.32 0.00 37.13 1.40
4736 5433 4.435137 TGTGGCCTACCTATAGCCATAAT 58.565 43.478 3.32 0.00 37.13 1.28
4737 5434 3.838317 CTGTGGCCTACCTATAGCCATAA 59.162 47.826 3.32 0.00 37.13 1.90
4738 5435 3.441101 CTGTGGCCTACCTATAGCCATA 58.559 50.000 3.32 2.79 37.13 2.74
4739 5436 2.260822 CTGTGGCCTACCTATAGCCAT 58.739 52.381 3.32 0.00 37.13 4.40
4740 5437 1.717032 CTGTGGCCTACCTATAGCCA 58.283 55.000 3.32 0.00 34.29 4.75
4741 5438 0.977395 CCTGTGGCCTACCTATAGCC 59.023 60.000 3.32 0.00 36.63 3.93
4742 5439 0.977395 CCCTGTGGCCTACCTATAGC 59.023 60.000 3.32 0.00 36.63 2.97
4743 5440 2.400467 ACCCTGTGGCCTACCTATAG 57.600 55.000 3.32 0.00 36.63 1.31
4744 5441 2.111255 CCTACCCTGTGGCCTACCTATA 59.889 54.545 3.32 0.00 36.63 1.31
4745 5442 1.132817 CCTACCCTGTGGCCTACCTAT 60.133 57.143 3.32 0.00 36.63 2.57
4746 5443 0.263765 CCTACCCTGTGGCCTACCTA 59.736 60.000 3.32 0.00 36.63 3.08
4747 5444 1.003051 CCTACCCTGTGGCCTACCT 59.997 63.158 3.32 0.00 36.63 3.08
4748 5445 1.002533 TCCTACCCTGTGGCCTACC 59.997 63.158 3.32 0.00 33.59 3.18
4749 5446 1.049289 CCTCCTACCCTGTGGCCTAC 61.049 65.000 3.32 0.69 33.59 3.18
4750 5447 1.226104 TCCTCCTACCCTGTGGCCTA 61.226 60.000 3.32 0.00 33.59 3.93
4751 5448 2.041265 CCTCCTACCCTGTGGCCT 59.959 66.667 3.32 0.00 33.59 5.19
4752 5449 2.040606 TCCTCCTACCCTGTGGCC 59.959 66.667 0.00 0.00 33.59 5.36
4753 5450 2.066999 CCTCCTCCTACCCTGTGGC 61.067 68.421 0.00 0.00 33.59 5.01
4754 5451 0.042731 TTCCTCCTCCTACCCTGTGG 59.957 60.000 0.00 0.00 37.80 4.17
4755 5452 1.196012 GTTCCTCCTCCTACCCTGTG 58.804 60.000 0.00 0.00 0.00 3.66
4756 5453 0.042881 GGTTCCTCCTCCTACCCTGT 59.957 60.000 0.00 0.00 0.00 4.00
4757 5454 1.043673 CGGTTCCTCCTCCTACCCTG 61.044 65.000 0.00 0.00 0.00 4.45
4758 5455 1.310373 CGGTTCCTCCTCCTACCCT 59.690 63.158 0.00 0.00 0.00 4.34
4759 5456 1.001376 ACGGTTCCTCCTCCTACCC 59.999 63.158 0.00 0.00 0.00 3.69
4760 5457 0.324091 TGACGGTTCCTCCTCCTACC 60.324 60.000 0.00 0.00 0.00 3.18
4761 5458 0.816373 GTGACGGTTCCTCCTCCTAC 59.184 60.000 0.00 0.00 0.00 3.18
4762 5459 0.406750 TGTGACGGTTCCTCCTCCTA 59.593 55.000 0.00 0.00 0.00 2.94
4763 5460 0.900647 CTGTGACGGTTCCTCCTCCT 60.901 60.000 0.00 0.00 0.00 3.69
4764 5461 1.592223 CTGTGACGGTTCCTCCTCC 59.408 63.158 0.00 0.00 0.00 4.30
4765 5462 1.592223 CCTGTGACGGTTCCTCCTC 59.408 63.158 0.00 0.00 0.00 3.71
4810 5507 3.865929 AACTGTCAGGAGCACGCCG 62.866 63.158 4.53 0.00 0.00 6.46
4825 5522 6.328410 TCTGGTCATCAGATCAATATCCAACT 59.672 38.462 0.00 0.00 46.71 3.16
4847 5546 4.152045 GCATGTCAGTCACTTCTCTTTCTG 59.848 45.833 0.00 0.00 0.00 3.02
4853 5552 3.593096 TGATGCATGTCAGTCACTTCTC 58.407 45.455 2.46 0.00 0.00 2.87
4855 5554 4.959596 AATGATGCATGTCAGTCACTTC 57.040 40.909 2.46 0.00 0.00 3.01
4867 5566 5.126061 GTGAGGTACCTGAAAAATGATGCAT 59.874 40.000 22.10 0.00 0.00 3.96
4868 5567 4.458989 GTGAGGTACCTGAAAAATGATGCA 59.541 41.667 22.10 3.00 0.00 3.96
4870 5569 4.695455 ACGTGAGGTACCTGAAAAATGATG 59.305 41.667 22.10 0.00 0.00 3.07
4874 5573 6.155737 ACCTATACGTGAGGTACCTGAAAAAT 59.844 38.462 22.10 9.80 45.82 1.82
4877 5576 4.400251 CACCTATACGTGAGGTACCTGAAA 59.600 45.833 22.10 1.16 45.93 2.69
4879 5578 3.548770 CACCTATACGTGAGGTACCTGA 58.451 50.000 22.10 8.52 45.93 3.86
4883 5582 2.292845 GGAGCACCTATACGTGAGGTAC 59.707 54.545 20.08 15.87 45.93 3.34
4905 5604 1.183549 GTCACGGGGTCATCTACTGT 58.816 55.000 0.00 0.00 0.00 3.55
4906 5605 1.475403 AGTCACGGGGTCATCTACTG 58.525 55.000 0.00 0.00 0.00 2.74
4907 5606 2.100989 GAAGTCACGGGGTCATCTACT 58.899 52.381 0.00 0.00 0.00 2.57
4908 5607 1.202268 CGAAGTCACGGGGTCATCTAC 60.202 57.143 0.00 0.00 0.00 2.59
4909 5608 1.100510 CGAAGTCACGGGGTCATCTA 58.899 55.000 0.00 0.00 0.00 1.98
4910 5609 1.890894 CGAAGTCACGGGGTCATCT 59.109 57.895 0.00 0.00 0.00 2.90
4911 5610 1.810030 GCGAAGTCACGGGGTCATC 60.810 63.158 0.00 0.00 0.00 2.92
4912 5611 1.899437 ATGCGAAGTCACGGGGTCAT 61.899 55.000 0.00 0.00 0.00 3.06
4913 5612 2.107041 AATGCGAAGTCACGGGGTCA 62.107 55.000 0.00 0.00 0.00 4.02
4914 5613 1.375523 AATGCGAAGTCACGGGGTC 60.376 57.895 0.00 0.00 0.00 4.46
4915 5614 1.671054 CAATGCGAAGTCACGGGGT 60.671 57.895 0.00 0.00 0.00 4.95
4916 5615 1.375396 TCAATGCGAAGTCACGGGG 60.375 57.895 0.00 0.00 0.00 5.73
4917 5616 0.670546 AGTCAATGCGAAGTCACGGG 60.671 55.000 0.00 0.00 0.00 5.28
4918 5617 1.990799 TAGTCAATGCGAAGTCACGG 58.009 50.000 0.00 0.00 0.00 4.94
4919 5618 3.177838 CGTATAGTCAATGCGAAGTCACG 59.822 47.826 0.00 0.00 45.43 4.35
4920 5619 3.061139 GCGTATAGTCAATGCGAAGTCAC 60.061 47.826 0.00 0.00 45.43 3.67
4921 5620 3.113322 GCGTATAGTCAATGCGAAGTCA 58.887 45.455 0.00 0.00 45.43 3.41
4922 5621 3.372954 AGCGTATAGTCAATGCGAAGTC 58.627 45.455 0.00 0.00 45.43 3.01
4923 5622 3.438297 AGCGTATAGTCAATGCGAAGT 57.562 42.857 0.00 0.00 45.43 3.01
4924 5623 4.504461 AGAAAGCGTATAGTCAATGCGAAG 59.496 41.667 0.00 0.00 45.43 3.79
4925 5624 4.267690 CAGAAAGCGTATAGTCAATGCGAA 59.732 41.667 0.00 0.00 45.43 4.70
4926 5625 3.796717 CAGAAAGCGTATAGTCAATGCGA 59.203 43.478 0.00 0.00 45.43 5.10
4927 5626 3.551890 ACAGAAAGCGTATAGTCAATGCG 59.448 43.478 0.00 0.00 45.37 4.73
4928 5627 5.749109 ACTACAGAAAGCGTATAGTCAATGC 59.251 40.000 0.00 0.00 0.00 3.56
4929 5628 7.757097 AACTACAGAAAGCGTATAGTCAATG 57.243 36.000 0.00 0.00 0.00 2.82
4930 5629 8.656849 CAAAACTACAGAAAGCGTATAGTCAAT 58.343 33.333 0.00 0.00 0.00 2.57
4931 5630 7.359765 GCAAAACTACAGAAAGCGTATAGTCAA 60.360 37.037 0.00 0.00 0.00 3.18
4932 5631 6.090358 GCAAAACTACAGAAAGCGTATAGTCA 59.910 38.462 0.00 0.00 0.00 3.41
4933 5632 6.310711 AGCAAAACTACAGAAAGCGTATAGTC 59.689 38.462 0.00 0.00 0.00 2.59
4934 5633 6.090898 CAGCAAAACTACAGAAAGCGTATAGT 59.909 38.462 0.00 0.00 0.00 2.12
4935 5634 6.310467 TCAGCAAAACTACAGAAAGCGTATAG 59.690 38.462 0.00 0.00 0.00 1.31
4936 5635 6.090358 GTCAGCAAAACTACAGAAAGCGTATA 59.910 38.462 0.00 0.00 0.00 1.47
4937 5636 4.994852 TCAGCAAAACTACAGAAAGCGTAT 59.005 37.500 0.00 0.00 0.00 3.06
4938 5637 4.210537 GTCAGCAAAACTACAGAAAGCGTA 59.789 41.667 0.00 0.00 0.00 4.42
4939 5638 3.002348 GTCAGCAAAACTACAGAAAGCGT 59.998 43.478 0.00 0.00 0.00 5.07
4940 5639 3.002246 TGTCAGCAAAACTACAGAAAGCG 59.998 43.478 0.00 0.00 0.00 4.68
4941 5640 4.273480 TCTGTCAGCAAAACTACAGAAAGC 59.727 41.667 0.00 0.00 43.90 3.51
4942 5641 5.991328 TCTGTCAGCAAAACTACAGAAAG 57.009 39.130 0.00 0.00 43.90 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.