>input_sequence_25596
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---------------------------------------------------------------------ATGGCGCGCTC
CCGCCGGCCCCGCACGCCGC------------------------------------------------------------
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------------------------------------------AGGCCAAGTCCCCGCCGCCCAGATCGAGGGAGCCGGCC
GCGGTCGCTGCGGCTTCCCCGGGGCCC---GCCTCTCGCCCCCGCCCCCGCCGCCGGCTGCGCGTGCAGAGCCCCTCCCT
GGCGGCGTCCGCGCGCCGCGTGGCGGCCGCGCCGCCCGCCACCCCGCCGCTCCGCTGGCCCGGGGACGCCGCCGCGCGTG
TCGGCGCGGGGGCCGC------------CTCCGTGAGGAAGATCGCCGCGGCGCTCTGGCGGGTCCACCC----------
-----------GGTG---------------------CCCGAGGAACCGCGGCGACGGCCCGAGGTAGGGGTTTGTCTCCC
AGATCAGCGTGGATCTTCTTTCCCCGTGGCTGCGTGCGT-----CTGTGCTGCTGTGGCGTTCTAGGGTTTCGTTGTGGC
CGTCCTCTGGTGGAATGCAACCAGCGACGAACTAGTTAGAATTTTGGTCGTTTGGTGCTCTGTCACCCTTTT--------
------------------------------TCTACAAG-TTTTGAGCTGATTGTTCTGAAAGCTAG-GTGTCCCCGCATC
CGATGGGCGAAGGGAATCGGGTGCCATGGCTGCGAATTTTGTCACAATGTTACTGTCTCGGCACACCGCGTC-GCCGATT
CGACGGACGAAGGGACCATTTTGCCGCTGAGCATTTTTAGTTGGAGGTGGAATGTGACTATCTAGCATAAATG-------
-----------------------------------TTGCTTATTGCGTCATAATGTGTAGCAAGCTGTGCATCTACTTCG
CTGGGTAAATTTTGGTATTTAGGGAGAGATAGCAGGGTCCATGTTTCCGCATCAATTTGGTACCACTATCATGTCGGGTT
TTATGTTAGATTTGAGCATGTCCATGTCCTTTGTTGATCCAATTGGTGATCATTGCCGTCCTAGATTGCTTAGTGTTAGC
TGTATCTCCATTAATCGGGCCCAGGGATGTCACATCTCCATGTTTCCATTATTATCTACCCTCTAATCAGGGTCCTTGTG
GTCCCTATATATTGCTGTTAGTGTTAC-TATCTGTAATGGTGACCATCCAATGGGTGGCTTTGAACATTTTTTTCTCCAT
TTGACTTGTAGATTTTGTAACATA-TACTCCCTCTGTCCCCAAATAACTGTCACCTACTTAGTATAACTTTGTACTAAAT
CAGTGACGACACTTATTTTGGGACGGAGGGAGTATTAATATGTGGTTTTGAAGTGTTGGTGATGAGCTAACAGAGATAAT
TTGCAGCCTAACCCGAAGCCTCTGCATACGCCGGATCGGTGCAATTACTACAAAGCTGTCCTGGAAGGCAGGTCAGGAAG
AAAACCTCTTGGCAACGGCAGCATTCATGAGGTATATTCCTTGTTCACAAATTATTACTACTTAAGAGTACAGTTCACCA
TTTTCTTTTCTGATCTTGTTTTATTAATGAGAATGATTTTGATCCTAAATTAGGTGGGAGCTTACTCTCCATCACCTCGA
ATCGAAATGGAGGTGGCAACCAAGTGGGACCGTCGTTGCTTGAACACGTCGAGGGATGCTGACTGCGATTCCTTTGATCG
TTATCCAGTGAGTGCTGATGCAGAAATCTCTGCACTAAGAGCAGAGCTTATGCAGGCTCACAACAGGATTCATGAGCTTG
AAGCTGAGAGTCGGTCTGCAAAGAAGAAGCTTGATCACATGTTAAGGAGCCTTTCTGAGGAAAAGGCTTCCTGGAAGAGC
AGGGAGCATGACAAGGTTCGAGACATCTTTGATGGTGTTAAAGAGAGTCTGAACCGGGAGAGGAAGAACCGACAAAGGGC
AGAAATTATGAATTCCAAGTTGGCCACTGAGGTATCCGAGTTGAAGTTGGTGGCAAAGCGATACTTGCAAGATTATGAAA
AGGAGAGGAAGGCCAGGGAGCTTATGGAGGAGGTGTGTGATGAATTAGCAAAGGAGATTGCGGAAGACAAAGCTGAGGTT
GAGGCTCTGAAGAGTGAATCTATGAAGATGAGAGATGAGCTGGAGGAAGAAAGGAAGATGCTGCAGATGGCGGAGGTTTG
GCGCGAAGAGAGGGTTCAGATGAAGCTCGTTGATGCAAAGCTGACACTAGACAGCAAGTATTCACATCTGAGCGACCTTC
AGTCTGAGGTTGAGGCTTTCCTCAGTTCCCACGGAGGCAATACTGCAGATAAAGAGATGGTAAGAGATGCAGAAAGGCTA
AGGGAAGCAATTTGCTCTATGAAGTTTCATGATATTAAGGAGTTCTCTTACAAACCGCCACCTGCGTCAGAGGACATTTT
TGCTGTATTTGAGGAGCTCAGACAGAGGGAAGACACTGACGAGAAGGAGATTGGGCAGTGTAATGGAGATATCCCCATCG
GTCATGCAACAAAGATCCACACAGTTAGTCCTGAAACTGACATCTTCCTGGAAAAACCATCAAAGAGGTATCCCCATCAA
CCCTGTGCCAGAAATGAAGAGGAAGATGACAGCGGATGGGAGACTGTCAGCCATGTCGACGAGCACGGCTCGAGCAACTC
ACCAGGTGGGAGTGAACCATCAGTCAACGGCTTCTGTGGAGGAAACGGCGCATCGGTGAGCGGAACGGACTGCGACGACA
ATTCTGAAAACTGCAGGTCCATCAGCGGTATCAGCGAAGTATGTTCGACCACAGCAGAGAAGTACCGGAAGAGAGGGCCT
TCTTTCGCCAGACTCTGGAGATCATCAAACAACGACAATGGCCGCAAGAAAACAGGATCAGAGTTGTTGAACGGGATGCT
CTCCAGCGGCAGAATGTCGAACTCCGCTCTCTCGCCCACCCTGAAGGGCAGCGAGGTGTGCACGGTTTCGCCGAGCGTGG
GCGAGTGGAGCCCGGAGCTGGTGAACCCCCACGTGGTGCGCGCGATGAAAGGTCGCATCGAATGGCCCCAGGGCGCGAAG
AAGCAGAGCCTGAAGTCCAAGCCTCTGGATTCGAGATTCGACGGCCGCAAGGTCCAGCTGCGCCAAGCGTTGAAGCAGAA
GATATAG-------------------------------------------------------------------------
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-------------------------------------------------------------------
>chr1D_1_TraesCS1D01G317000
CCCCACTGTTGTGTTGGCCACCACCTTGACCATCCCTCTAAGCCCTTCGACCCACGACAACTCCGGTGACCACCCCATCC
CTTCTCATCAACCTGCACCCGTCAAGTTTTGGACTCACTCCTGTCAGCTATCGTCGGTTGCCGCTCGGCCTCGCCGTCCC
TGGTGATGCTCATGCT-GCCCCCGTTTCGGGCTCACGCTAAGCCGAAAAGGGG---------------------------
--ACTTGATGATTAGCAAATGCGAAAAAATTCAATTAGTTGGGCGCACACCTCCATGAAGTCAAAATACCATATGGTACA
TTGTGAAAAGTCGTAGCAAAATTTGTGAACTGCATGAGGTCAAATTTAATATGCATAGTTTTTGTTTTGCGAATATTTTT
GTATGTGTACTCGCTACCATAATCCCTCGCCCATTTCCATTCTTTTTCTTAGCACACGAAAAGTCATATTCATTCAAATT
TTAGCAAGTGATATTGCTACT--------------------AAATTTTTGTTCTAAAACTTTGAGGTATATACTCTCACA
--AACACAACTCACTGTGGATA---TCCCAT-AAGCCCTAAATCACTATTGTGTCTTTTAT---CCAAACAGCTCAACTT
AGACCATTTTTGACTCAACCCAAAAACATTTCACCATCAC--------AAGCCACAAATTCCAAATCCCAAATTACTACC
AAATCCACGAGAGAAGAGAAACAAAAGCAAAACAAATCCTTCCATTCCATTCCATCCATCTCCCTTTCCCCTTCCCTTTT
CCCTCATCCCACGTTCTCCAGCCTCCATCACGAGCCTACGCAGCTACCCCTACTACTACTACTAGTACTACTCGTAGCAC
TACCGCCAGTCGTATCAAAACCACCACTGGGC-------------ACACACACACCACGGCGTCCCCTGCCGTGGCACCA
GCAGTACTGGATCTCGCCCGCAGACCCGCACGCGCATCCG--------CCTCCCTCCCTCCACCG---------------
--GTGAATGCCACCGCCCCCGCCCGCCGCCGACGCCCACTGAGC----GAGCGAGCGAGCCCGCGGCCAATGGCGCGCTC
CCGCCGGCCCCGCACGCCGC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGGCCAAGTCCCCGCCGCCCAGATCGAGGGAGCCGGCC
GCGGTCGCTGCGGCTTCCCCGGGGCCC---GCCTCTCGCCCCCGCCCCCGCCGCCGGCTGCGCGTGCAGAGCCCCTCCCT
GGCGGCGTCCGCGCGCCGCGTGGCGGCCGCGCCGCCCGCCACCCCGCCGCTCCGCTGGCCCGGGGACGCCGCCGCGCGTG
TCGGCGCGGGGGCCGC------------CTCCGTGAGGAAGATCGCCGCGGCGCTCTGGCGGGTCCACCC----------
-----------GGTG---------------------CCCGAGGAACCGCGGCGACGGCCCGAGGTAGGGGTTTGTCTCCC
AGATCAGCGTGGATCTTCTTTCCCCGTGGCTGCGTGCGT-----CTGTGCTGCTGTGGCGTTCTAGGGTTTCGTTGTGGC
CGTCCTCTGGTGGAATGCAACCAGCGACGAACTAGTTAGAATTTTGGTCGTTTGGTGCTCTGTCACCCTTTT--------
------------------------------TCTACAAG-TTTTGAGCTGATTGTTCTGAAAGCTAG-GTGTCCCCGCATC
CGATGGGCGAAGGGAATCGGGTGCCATGGCTGCGAATTTTGTCACAATGTTACTGTCTCGGCACACCGCGTC-GCCGATT
CGACGGACGAAGGGACCATTTTGCCGCTGAGCATTTTTAGTTGGAGGTGGAATGTGACTATCTAGCATAAATG-------
-----------------------------------TTGCTTATTGCGTCATAATGTGTAGCAAGCTGTGCATCTACTTCG
CTGGGTAAATTTTGGTATTTAGGGAGAGATAGCAGGGTCCATGTTTCCGCATCAATTTGGTACCACTATCATGTCGGGTT
TTATGTTAGATTTGAGCATGTCCATGTCCTTTGTTGATCCAATTGGTGATCATTGCCGTCCTAGATTGCTTAGTGTTAGC
TGTATCTCCATTAATCGGGCCCAGGGATGTCACATCTCCATGTTTCCATTATTATCTACCCTCTAATCAGGGTCCTTGTG
GTCCCTATATATTGCTGTTAGTGTTAC-TATCTGTAATGGTGACCATCCAATGGGTGGCTTTGAACATTTTTTTCTCCAT
TTGACTTGTAGATTTTGTAACATA-TACTCCCTCTGTCCCCAAATAACTGTCACCTACTTAGTATAACTTTGTACTAAAT
CAGTGACGACACTTATTTTGGGACGGAGGGAGTATTAATATGTGGTTTTGAAGTGTTGGTGATGAGCTAACAGAGATAAT
TTGCAGCCTAACCCGAAGCCTCTGCATACGCCGGATCGGTGCAATTACTACAAAGCTGTCCTGGAAGGCAGGTCAGGAAG
AAAACCTCTTGGCAACGGCAGCATTCATGAGGTATATTCCTTGTTCACAAATTATTACTACTTAAGAGTACAGTTCACCA
TTTTCTTTTCTGATCTTGTTTTATTAATGAGAATGATTTTGATCCTAAATTAGGTGGGAGCTTACTCTCCATCACCTCGA
ATCGAAATGGAGGTGGCAACCAAGTGGGACCGTCGTTGCTTGAACACGTCGAGGGATGCTGACTGCGATTCCTTTGATCG
TTATCCAGTGAGTGCTGATGCAGAAATCTCTGCACTAAGAGCAGAGCTTATGCAGGCTCACAACAGGATTCATGAGCTTG
AAGCTGAGAGTCGGTCTGCAAAGAAGAAGCTTGATCACATGTTAAGGAGCCTTTCTGAGGAAAAGGCTTCCTGGAAGAGC
AGGGAGCATGACAAGGTTCGAGACATCTTTGATGGTGTTAAAGAGAGTCTGAACCGGGAGAGGAAGAACCGACAAAGGGC
AGAAATTATGAATTCCAAGTTGGCCACTGAGGTATCCGAGTTGAAGTTGGTGGCAAAGCGATACTTGCAAGATTATGAAA
AGGAGAGGAAGGCCAGGGAGCTTATGGAGGAGGTGTGTGATGAATTAGCAAAGGAGATTGCGGAAGACAAAGCTGAGGTT
GAGGCTCTGAAGAGTGAATCTATGAAGATGAGAGATGAGCTGGAGGAAGAAAGGAAGATGCTGCAGATGGCGGAGGTTTG
GCGCGAAGAGAGGGTTCAGATGAAGCTCGTTGATGCAAAGCTGACACTAGACAGCAAGTATTCACATCTGAGCGACCTTC
AGTCTGAGGTTGAGGCTTTCCTCAGTTCCCACGGAGGCAATACTGCAGATAAAGAGATGGTAAGAGATGCAGAAAGGCTA
AGGGAAGCAATTTGCTCTATGAAGTTTCATGATATTAAGGAGTTCTCTTACAAACCGCCACCTGCGTCAGAGGACATTTT
TGCTGTATTTGAGGAGCTCAGACAGAGGGAAGACACTGACGAGAAGGAGATTGGGCAGTGTAATGGAGATATCCCCATCG
GTCATGCAACAAAGATCCACACAGTTAGTCCTGAAACTGACATCTTCCTGGAAAAACCATCAAAGAGGTATCCCCATCAA
CCCTGTGCCAGAAATGAAGAGGAAGATGACAGCGGATGGGAGACTGTCAGCCATGTCGACGAGCACGGCTCGAGCAACTC
ACCAGGTGGGAGTGAACCATCAGTCAACGGCTTCTGTGGAGGAAACGGCGCATCGGTGAGCGGAACGGACTGCGACGACA
ATTCTGAAAACTGCAGGTCCATCAGCGGTATCAGCGAAGTATGTTCGACCACAGCAGAGAAGTACCGGAAGAGAGGGCCT
TCTTTCGCCAGACTCTGGAGATCATCAAACAACGACAATGGCCGCAAGAAAACAGGATCAGAGTTGTTGAACGGGATGCT
CTCCAGCGGCAGAATGTCGAACTCCGCTCTCTCGCCCACCCTGAAGGGCAGCGAGGTGTGCACGGTTTCGCCGAGCGTGG
GCGAGTGGAGCCCGGAGCTGGTGAACCCCCACGTGGTGCGCGCGATGAAAGGTCGCATCGAATGGCCCCAGGGCGCGAAG
AAGCAGAGCCTGAAGTCCAAGCCTCTGGATTCGAGATTCGACGGCCGCAAGGTCCAGCTGCGCCAAGCGTTGAAGCAGAA
GATATAGGATGGCCCGGCCACACGCTGTATCCTACTCGTATTTCTGAATATAGGACGATCTTGCCTTGTACACGGGGTGG
GTGCCTGATCTGGAAGAAGAAATCACTTGTAGTAACATTGGTCCCTGAAATGGGTGC-TATCATCGGCTGTACCTAATTG
ATGTTCTGATAGCCCTTTAGCTCGCATAGAAAATTTCACGACGCCCTTGTAATCAAATGTAGTATCAGTAGTATTTTTCA
ATCAAACGCATTACTTAGGCATGTCTCTAGACACTTTGA--CCGTGGCTGCTTCTGTCTGTTTCTTGTCCTGGTGATGAT
GTATGTTTCTTGAGCTGGACC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GAAACTTTGCGTAGGAACTGGAGGT-GCTGTGACCAAACTGATTTGAGAGGTCA
TCTGCT---GTAGAGGAGCTTCGCATTTATAGAGAAGTTTG----CGTGTGCTCATCTGGATGCTGGAGCTATCTTACTA
TGTGAAAGTGTGAGACTCATCATCTGCACCCTTGGGCTGTGG--AGTATTCGGTTTTGCTAAATCTCAGGTGCCTAAACT
TATTTGTGGCGTCAGTCAGTTTTCTCTGCCAAAGCGCGAAGCTGAAGGCGGGACAGCATGAGGAGCACCGGCCACAGCAA
GGCCGAGCCGTGTGCGAGTGGGAGCCGGCAATGGCGAGTCCGAAACTTAACCAGGGGTGCAGGAGAGGGGCTGCCGGAGG
TGTTCATCTGGGCGATGCTTAAGAGGGACGGTGGCCAACATGGCGATGGGGGAGGGGGGCGGCAGGTAGGGAATTATGGC
TATAGGTAGGCCACAGGGTAGGAGGAGGAACCGTCACAGGGAAGGAGGAAGAAGATGAACAGATGGCGGCGTGCTCCTGA
CAGTTGGATATTG--ATCTGATGACCAGAAAGAGAAGTGACTGACATGCATCATTTTTCAGGTACCTCACGTATAGGTGC
TCCACAGTAGATGACCCCGTGACTTCGCATTGACTATACGCTTTCTGTAGTTTTGCTGACAGATGAT
>chr1B_11
GTGC----------TGGCAACCAGCTCGACCATCCCTCTAAAACCTTCGACCTGCAACAACTTAGATGACCACCCCACTC
CCTCCCATTGACCTGCACCCGTCATGTTTTGGACTCGCTCCTGTCAGCTATCGTCGGTTGCCGCTCGGCCTCGCAGTGCC
TGGCGATGCTCATGCAAGCCCCGCTTTCGGCCTCACGCTAAGGGAAAAAGGTGTCTGACGCACATTTCTTATTCTCCCGG
ATACTTGATGATTAGCAAATGCGAAAAATG-CAATGAGTTGGGCGCACACCTTCATGGAGTCAAAAAAGTATATGGTACA
TTGTGAGAAGTCGTAGCAAAATTTGTGAAGTGCA-----TCAAATCTAATATGCATAGTTTTTATTTTGCGAATATTTTT
GTATGTGTACCGGCTACCATAATCCCTTGCCTATTTCCATTATTTTTCTTAGCACACGAAAAGTCACATTCATTCTTATA
AATTTATTTC-------------------------------AAATTTTTGTTCTAAAACTTTGAGGTATATACTCTCACA
--AACACAACTCACTCTGGATAATATCCCAT-AAGCTCTAAATCACTGGTGTTTTCTTTTTTAGCCAAACAGCTCAAATT
ATTCCATTTTCAACTCAACCCAAAG-CATTTCACTATCACATTTCACAAAGCCACAAATTCCAAAAGTCCAAAA--TACC
AAATCCACAAAGGGAGAAAACAAATCC-----------------TTCCATTCCATCCATCTCCCTTTCCCCTC-------
-----ATCCCACGTTCTCTAGCCTCCATCACGAGCCTACGCAGCTACCCCTACTGTACTAGAGTA--------GTAGCAC
TACCACCAGTCGTATCAAAACCACCACTGGGCG-------CACACACACACACACCACTGCGTCCCCTGCCGCGGCACCG
---GTACTGGATCTCGCTCGCAGACCCGCACGCGCATCCCCCTCCCTCCCTCCCTCCCTCCACCGCCCGCGCCACATCCC
CGGTGAATGCCACCGCCCCCGCCCGCCGCCGACGCCCACTGAGCGAG-------------CCGCGGCCAATGGCGCGCTC
CCGCCGCCCCCGCACGCCGCAGGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCCAAGTCCCCGCCTCCCAGATCGAGGGAGCCGGCC
GCGGCG---------TCCCCGGGCCCCGCGGCCTCCCGCCCCCGCCCCCGCCGCCGGCTGCGCGTGCAGAGCCCCTCCCT
GGCGGCGTCCGCGCGCCGCGTGGCGGCCGCGCCGCCCGCCACCCCGCCGCTTCGCTGGCCCGGGGACGCCGTCGCGCGTG
T------------CGGCGCGGGGGCCGTCTCCGTGAGGAAGATCGCCGCGGCGCTCTGGCGGGTCCACCC----------
-----------GCCGCAGGCGCCGCCGAGGGAGGTCCCCGAGGAACCGCGGCGACGGCCCGAGGTAGGGGTTTGTCTCCC
AGATCAGCGTGGATCTTCTTCCCCCGTTGTCTCGTGCGT-----CTGTGCTGCTGTGGCGTTCTAGGGTTTCGTTGTGGC
CATCCTCTGGTGGAATGCAACCAGCGACGAACTAGTTAGAATTTGGGTCGTTTGGCGCTCTGTCATCCTTTT--------
------------------------------TCTTCAAGTTTTTGAGCTGATTGTTCTGAAAGCTAG-GTATCTCCGCATC
CGATGGGTGAAGGGAATCGGGTGTGATGGGTGCGAATTTTGTCACAATGTTGCTGTCTCGGCACATTGCGTC-GCCGATT
CGAGGGACGAAGGGACCGTGTTGCCGCTGAACATTTTTAGTTGGAGGTGGAATTTGACTATCTAGCATAAATG-------
-----------------------------------TTGCTTATTGCGTCATAATGTGTAGCGAGCTGTGCATCTACTTCG
CTGGGTAAATTTTGGTATTTAGGGAGAGATAGCAGGGTCCATGTTGATCCTATTTTT-----------------------
----------------------------------------------TGATCATTGCCGTCCTAGATTGCTTAGTGTTCGC
TGTATCTCCATTAATCGGGCCCAGGGATGTCACATCTCCATGTTTCCATTATTATCTACCCTCTAATCAGGGTCCTTGTG
GTCCCTATATATTGCTGTTAGTGTTAC-TATCTGTAATGGTGACCATCCAATGGATGGCTTTGACCATTTTTTTCTCCAC
TTGACATGTAGATTTTGTAATATGC-------------------------------------------------------
--------------------------------TATTAATATGTGGTTTTGAAGTATTGGTGGTGAGCTAACAGAAATAAT
TTGCAGCCTAACCCGAAGCCTCTGCATACACCGGATCGGTGCAATTACTACAAAGCTGTCCTGGAAGGCAGGTCAGGAAG
AAAGCCTCTTGGCAACGGCAGCATTCATGAGGTATATTCCTTGTTCACGAATTACTACTTA--AAGAGTACAGTTCACCA
TTTTCTTTTCTTATCTTGTTTTATTAATGAGAATGATTTTGATCCTAAATTAGGTGGGAGCTTACTCTCCATCACCTCGA
ATCGAAATGGAGGTGGCAACCAAGTGGGACCGTCGTTGCTTGAACACGTCGAGGGATGCTGACTGTGATTCCTTTGATCG
TTATCCAGTGAGTGCTGATGCAGAAATCTCTGCACTAAGAGCAGAGCTTATGCAGGCTCACAACAGGATTCATGAGCTTG
AAGCTGAGAGTCGGTCTGCAAAGAAGAAGCTTGATCACATGTTAAGGAGCCTTTCTGAGGAAAAGGCTTCCTGGAAGAGC
AGGGAGCATGACAAGGTTCGAGACATCTTTGATGGTGTTAAAGAGAGTCTGAACCGGGAGAGGAAGAACCGCCAAAGGGC
AGAAATTATGAATTCCAAGTTGGCCACTGAGGTATCCGAGTTGAAGTTGGTGGCAAAGCGATACTTGCAAGATTATGAAA
AGGAGAGGAAGGCCAGGGAGCTTATGGAGGAGGTGTGTGATGAATTAGCAAAGGAGATTGCGGAAGACAAAGCTGAGGTT
GAGGCTCTGAAGAGTGAATCTATGAAGATGAGAGATGAGCTGGAGGAAGAAAGGAAGATGCTGCAGATGGCGGAGGTTTG
GCGCGAAGAGAGGGTTCAGATGAAGCTCGTTGATGCAAAGCTGACACTGGACAGCAAGTATTCACAGCTGAGCGACCTTC
AGTCTGAGGTTGAGGCTTTCCTCAGTTCCCACGGAGGCAATACTGCAGATAA---------AAGAGATGCAGAAAGGCTA
AGGGAAGCAATTTGCTCGATGAAGTTTCATGATATTAAGGAGTTCTCTTATAAACCGCCACCTGCTTCAGAGGACATTTT
TGCTGTATTTGAGGAGCTCAGACAGAGGGAAGACACTGACGAGAAGGAGATTGGGCAGTGTAATGGAGATATCCCCATAG
GTCATGCAACAAAGATCCACACAGTTAGTCCTGAAACTGACATCTTCCTGGAAAAACCATCAAAGAGGTATCCCCATCAA
CCCTGTGCCAGAAATGAAGATGAAGATGACAGTGGATGGGAGACTGTCAGCCATGTTGATGAGCACGGCTCGAGCAACTC
ACCAGGTGGGAGTGAACCATCAGTGAACGGCTTCTGTGGAGGAAACGGCGCATCGGTGAGTGGAACAGACTGCGACGACA
ATTCTGAAAACTGCAGGTCCATTAGCGGTATCAGCGAAGTATGTTCGACCACAGCAGAGAAGTACCGGAAGAGAGGGCCT
TCTTTCGCCAGGCTCTGGAGATCGTCAAACAACGACAATGGTCGCAAGAAAACTGGATCAGAGTTACTGAACGGGATGCT
CTCCAGTGGCAGAA------ACTCCGCCCTTTCGCCCACTCTGAAGGGCAGCGAGGTGTGCACGGTTTCGCCGAGCGTGG
GCGAGTGGAGCCCGGAGCTGGTGAACCCTCACGTGGTGCGCGCGATGAAAGGTCGCATCGAATGGCCCCAGGGCGCGAAG
AAGCAGAGCCTGAAGTCCAAGCCTCTGGATTCGAGATTCGACGGCCGCAAGGTCCAGCTGCGCCAAGCGTTGAAGCAGAA
GATATAGGATGGCCCGGCCACACGCTGTATCCA------ATTTCTGAATATAGGACGATCTTGCCTTGTAA-------GG
GTGCCTGGTCTGTAAGAAGAAACCACCTGTAG---CATTGGTCCCTGAAA--------------CGGCTGTACCTAATTG
ATGTTCTGATAGCCCTT-AGCTCGAATAGAAAATTTCACGACGCCCTTGTAATCAAATGTAGTATCAGTAGTATTTTTCA
ATCAAATGCAGTACTTAGGCATGTCTTTAGACGCTTGAT--TGGTGGCTGTTTCTGTCTGTTTCTTGTCCTGGTGATGAT
GTATGTTTCTTGAGCTGGACC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GAAACTTTGCGTAGGAACTGGAGGT-GCTGTGACCAAACTGATTTGAGAGGTCA
TCTGCT---GTAGAGGAGCTTCGCATTTATAGAGAAGTTTG----CGTGTGCTCATCTGGATGCTGGAGCTATCT---TA
TGTGAAAGTGTGAAACTCGCCATCTGCACCCTTGGGCTAGGAGTAGTATTCGGTTTTGCTAAATCTCAGGTGCCTAAACT
TATTTGTGGCGTCAGTCAGTTTTCTCTGCCAAA-----------------------------------------------
---------------------------------------------------------------------GCTGCCGGAGG
TGTTCATCTGGGCGATGCT-------------------CATGGCGATGGGGGAGGCAGGTTGTTATGGCTAGGCGCCACA
GGGT------------------AGGAGGAACCGTCACAGGGAAGGAGGAAGAAGATGAACAGATGGTGGCGTGCTCCTGA
CCGTGGATTCCCATTATCTGATGACAAGAAACAAAAGTGACTGACGCGTATCGTTCTACAGATACCTCACGTATAGGTGC
TCC----------------------------------------------------------------
>chr1A_339
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATATGCATAGTTTTT--TTTCCGAATATTTTT
GTATGCATGCTTGCTACGATAACCCCTCGCCTCTTTCCTTTCTCTTTCTTAGCACACGAAAAGTCACATTCATACACATT
TTATCAAGTGTTCTTGTTACATATAATGTTTTTATAAAAAAAACTTTTTGTTCGAAAACTTGGAGGTATATACTCTCACA
CAAACGCAACTCGCCGTGGAGA---CTCCATCAAACTCTAAATCACTAGTGCATTTTTCAT---TCAAACAGCTCAAACC
GTTCCATTTTCAACTCAACCCAAAACATTTTCACCACCACAATTCACAAAGCCACAAATTCCAAAAGTCCAAAA--TACC
AAATCCACAAGAGGAGAAAAAC-AAAGCCAAACAAATCCTTCCATTGCATTCCATCCATCTCCCTTTCCCCTCCCCTTTT
CCCCCATCCCACGTTCCCCAGCCTCCATCACGAGCCTACGCAGCTACCCCTACTACTAG---TAGTACTACTCGTAGCAC
TAGCACCAGTCGTATCAAAACCACCACTGGGCTCTGGGCACACACACACGCACCCCACCGCGTCCCCTGCCGCGGCACCG
---GTACTGGATCTCGCCCGCAGACCCGCACGCGCACCCCCCCTCCCT--------CCCCCACCGCCCGCGCCGCATCCC
CGGCGAATGCCACCGCCCCCGCCCGCCGCCGACGCGCTCTGAGCGACCGACCGAGCGAGCCCGCGCACAATGGCGCGCTC
CCGCCGCCCCCGCACGCCGCAGGCCAA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GTCCTCGCCGCCCAGATCGAGGGAGCCGGCC
GCGGTCGCTGCGGCTTCCCCGGGCCCAGCGGCCTCCCGCCCCCGCCCCCGCCGCCGGCTGCGCGTGCAGAGCCCCTCTCT
GGCCGCGTCCGCGCGCCGCGTGGCGGCCGCCCCGCCCGCCACCCCGCCGCTCCGCTGGCCCGGGGACGCCGTCGCGCGCG
T------------CGC------------CTCCGTGAGGAAGATCGCCGCGGCGCTCTGGAGGGTCCACCCGCCGCAGGCG
CCGCCGCGGGAGGTG---------------------CCCGAGGAACCGCGGCGACGGCCGCAGGTAGGGATTTGTCTCCC
AGATCAGCGTGGATCTTCTTCCCCCGTGGTCGCGTGCGTCTGTGCTGTGCTGCTGTGGCGTTCTAGGGTTTTGCTGTGGC
CGTCCTCTGGTGGGATGCAACCGGCGACGAACTGGTTAGAATTTAGGTGGTTTCGTGCTCTGTGATCCTTTGTTTTCGTC
CTTCTTCAGGAGGTCCAGCCTGGTATTTTCTCTACAGG-TTTTGGGCTGTTTGTTCTGAAAGCTACTGTGTCTGCGCATC
CAATGGGTGGAGGGAATTCGGCGAGATGGGTGCGAATTTTCTCACAATGTTGCTGTCTCAGCGCATTGTGTCTGCCAATT
CGAGGGACGAAGGGACGGCA--------GAACATTTTTAGTTGGAGGTGGAATTTGACTATCTAGCATAAATGTTGCTTA
CTGACTTGGACTTCCAACCCACGATTCGCCCCATTTTGCTTACTGCGTCATAATGCGTAGCAAGCTGTGCATCTACTTCG
CTGGGTAAATTTTGGT--TTAGGGAGAGGTAGCAGGGTCCATGTTTCCGCGTCAATTTGGTACCACCATCATGTCAGGTT
TTATGTTAGATTTGAGCATGTCCATGTCCTTTGTTGATCCAATTGCTGATCATTGCCGTCCTAGATTGCTTAGTGTTCGC
TGTATCTCCATTAATCGGGCCCAGGGATGTCACATCTCCATGTTTCCATTATTATCTACCCTCTAATTAGGGTCCTTGTG
GTCCCTATATATTGCTGTTAGTGTTATATATCTGCAATGCTGACCATCCAATGGTTGGCTTTGAACATTTTTTTCTCCAT
TTGACATGTAGATTTTGTAAGATGCTACTCCCCCTGTCCCAAAATAAGTGTTGCCTACTTAGTATAACTTTGTACTAAAT
CAGTGAC---ACTTATTTTGGGACGGAGGGAGTATTAATATGTGGTTTTGAAGTGTTGGTGATGAGCTAAAAGAAATAAT
TTGCAGCCTAACCCGAAGCCTCTGCATACGCCGGATCGGTGCAATTACTACAAAGCTGTCCTGGAAGGCAGGTCAGGAAG
AAAGCCTCTTGGCAACGGCAGCATTCATGAGGTATATTCCTTGTTCACGAATTATTACTT----AGAGTACAGTTCACCA
TTTTCTTTTCTCATCTTGTTTTATTAATGAGAATGATTTTGATCCTAAATTAGGTGGGAGCTTACTCTCCATCACCTCGA
ATCGAAATGGAGGTGGCAACCAAGTGGGACCGGCGTGGCTTGAACACGTCAAGGGATGCTGACTGTGATTCCTTTGATCA
TTATCCAGTGAGTGCTGATGCAGAAATCTCTGCACTAAGAGCAGAGCTTATGCAGGCTCACAACCGGATTCATGAGCTTG
AAGCTGAGAGTCGGTCTGCAAAGAAGAAGCTTGATCACATGTTAAGGAGCCTTTCTGAGGAAAAGGCTTCCTGGAAGAGC
AGGGAGCATGATAAGGTTCGAGACATCTTCGATGGTGTTAAAGAGAGTCTGAACCGGGAGAGGAAGAACCGACAAAGGGC
AGAAATTATGAATTCCAAGTTGGCCACTGAGGTATCCGAGTTGAAGTTGGTGGCAAAGCGATACTTGCAAGATTATGAAA
AGGAGAGGAAGGCCAGGGAGCTTATGGAGGAGGTGTGTGATGAATTAGCAAAGGAGATTGCCGAAGACAAAGCTGAGGTT
GAGGCTCTGAAGAGTGAATCTATGAAGATGAGAGATGAGCTGGAGGAAGAAAGGAAGATGCTGCAGATGGCGGAGGTTTG
GCGCGAAGAGAGGGTTCAGATGAAGCTCGTTGATGCAAAGCTGACACTAGACAGCAAGTATTCACAGCTGAGCGACCTTC
AGTCTGAGGTTGAGGCTTTCCTCAGTTCCCATGGAGGCAATACTGCAGATAAAGAGATGGTAAGAGATGCAGAAAGGCTA
AGGGAAGCAATTTGCTCGATGAAGTTTCATGATATTAAGGAGTTCTCTTACAAACCGCCACCTGCTTCAGAGGATATTTT
TGCTGTATTTGAGGAGCTCAGACAGAGGGAAGACACCGAGGAGAAGGAGATTGGGCAGTGTAACGGAGATATCCCCATCG
GTCATGCAACAAATATCCACACAGTTAGTCCTGAAAATGACATCTTCCTGGAAAAACCATCGAAGAGGTATCCCCATCAA
CCCTGTGCCAGAAACGAAGAGGAAGATGACAGCGGATGGGAGACTGTCAGCCATGTCGATGAGCACGGCTCGAGCAACTC
ACCAGGTGGGAGTGAACCATCAGTGAACGGCTTCTGTGGAGGAGACGGCGCATCGGTGAGTGGAACGGACTGCGATGACA
ATTCTGAAAACTGCAGGTCCATTAGCGGTATCAGCGAAGTATGTTCGACCACAGCAGAGAAGTACCGGAAGAGAGGGCCT
TCTTTCGCCAGACTCTGGAGATCATCAAACAACGACAATGGCCGCAAGAAAACAGGATCAGAGTTACTGAACGGGATGCT
CTCAAGTGGCAGAATGTCGAACTCCGCTCTTTCGCCCACTCTGAAGGGCAGCGAGGTGTGCACGGTTTCGCCGAGCGTGG
GCGAGTGGAGCCCGGAGCTGGTGAACCCTCACGTGGTCCGCGCGATGAAAGGTCGCATCGAATGGCCCCAGGGCGCGAAG
AAGCAGAGCCTGAAGTCAAAGCCTCTGGATTCGAGATTCGACGGCCGCAAGGTCCAGCTGCGCCAAGCATTGAAGCAGAA
GATATAGGATGGCCCGTCCACACGCTGTATCCA------ATTTCTGAATATAGGACCATCTTGCCTTGGAA-------GG
GTGCCTGGTCTGTAAGAAGAAATGACTTGTAGTAACATTGGTCCCTGAAATGGGTGCCTATCATCGGCTGTACCTAATTG
ATGTTCTGATAGCCCTTTAGCTCGCATAGAATA-TTCACGACGCCCTTGTAATCAAATGTAGTATTAGTAGTGTCTTTCA
ATCAAATGCATTACTTAGGCATGTCTCTGGACACTTTTGACTGGTGGCTGCTTCTGTCTATTTCCTGTGCTTGTGATGAT
GTATGTATCTACTTCTATCGGTCGCGGAGTCTGGCAGTTTAAGACGGCTCTGCTCCAACGACTTGAGAAGGTGAGACGCA
ATCTCCATGGCTCCATGTATTTTGCATGCTCTATAGCGTATGTGGTGTTTCCTTCGTTAGTTTCGTTCATTTCAGTTCAG
TTCGTTTCTAGTTGCTTGCTGTTTTGGATACTTTGCCTAGGAACTGGAGGTTGCTGTGACCAGACTGATCTGAGAGCTAA
TCTTCTACTGTAGAGGAGCAAAGCATTCATCGTGACGATCGTTCGCGTGTGCTCATCTGGATGCTGGAGCTATCC---TA
TGTGGAAG--TGTGACTCGTCATCTGCACCCTTGGGCTATGG--AGTATTCGGTTTTGCTAAATCTCAGGCGCCTAATTT
TTTTTGTG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>SNPs
SSS-SSSSSSSSSS----S----S--S--------------SS---------SS-S------SS-S-----------SS-
-S--S---SS--------------S-----------S-------------------------------------S--S--
---S-----------S------SS------S-----------SSS------S----------------------------
----------------------------SSS----S----------------S----S--------S-SS----------
------S----------------------S----SSSSS------S-----------------S----------------
-----------S-------------------S----------------------------------S---------S---
---S------S-S---S---S-----------------------------------------------------------
------------------------------------S-----------S---S-S----------------------S--
-SS-------SS-------------S---------------------------------------SSS-S--SSSS----
--------S----S---S----------S-------------------------------------------S-------
---S------------------------------------------------------SSSS------------------
----S-----------------------------------------------------S-------------S------S
SSS------------------------------------S----------------------------------------
--------------------------------------------------S-----------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S-----------S--------------------------------------------
-----------------------------------------------------------------------S--------
-SSSSSSSSSSSS-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S--------SS-------------------------------------------------
--------------------------------------------S--------------------S--------------
------------------------------------------------------------------------S-------
-------S---------------SS----S---------------------S-------------SS-------------
---S-------------S-S----------S----------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S---------------S--------S----
---------------------------------------------S-------------------------------S--
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
-----S--------------S--S--------S-------S------S---SS---------------------------
-------SSS----------------------------------------------------------------S-----
--------------------------------------------------------------------------------
---S--------------------------------------------S----------SSSS-----------------
-----------S--------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
-----------------S-----------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
------------------------S-----------------------------------S-------------------
----------------------S---------------------------------------------------------
-----------------------------------------------------------------SS-------------
------S-----------------------S--------S----------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------SSSSSSS-------------------------------SSSSSSSS--
-------S----S-------------------------------------------------------------------
--------------------------------------------------------------------------------
------S------------------------------SS--SS-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------SSS--
------------------S-------------------S-----------------------------------------
---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
-------------------SSSSSSSSSSSSSSSSSSS-----------------SS--SS-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS--------------------------------------------S-------------
-S--S-SS-SSSS------------S-----S-S-----------SS-S---S--S-S---S------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_432
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------GCTACCATAATCCCTCGCCC------------------------------------------------
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>reverse_1885
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--------------------------------------------TGGTCGTTTGGTGCTCTGTC----------------
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>forward_1791
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-----------GATCTTCTTTCCCCGTGGCT-------------------------------------------------
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>reverse_2804
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---ACCTCTTGGCAACGGCAG-----------------------------------------------------------
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>forward_2067
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-----------------------------------------------TGTTACTGTCTCGGCACACC-------------
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>reverse_4025
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------------------------CAACGGCTTCTGTGGAGGAA------------------------------------
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>forward_3980
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----------------------------------------AGACTGTCAGCCATGTCGAC--------------------
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>reverse_5326
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---------------------------------------------CTTAACCAGGGGTGCAGGAG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
