Multiple sequence alignment - TraesCS1D01G308300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G308300 chr1D 100.000 2715 0 0 457 3171 404240555 404237841 0.000000e+00 5014.0
1 TraesCS1D01G308300 chr1D 83.717 1259 94 47 985 2209 404261030 404259849 0.000000e+00 1086.0
2 TraesCS1D01G308300 chr1D 89.299 542 30 7 459 986 404261588 404261061 0.000000e+00 654.0
3 TraesCS1D01G308300 chr1D 100.000 212 0 0 1 212 404241011 404240800 2.970000e-105 392.0
4 TraesCS1D01G308300 chr1D 92.174 115 7 2 2626 2740 404259659 404259547 9.100000e-36 161.0
5 TraesCS1D01G308300 chr1D 91.089 101 8 1 1 100 404261957 404261857 5.520000e-28 135.0
6 TraesCS1D01G308300 chr1D 98.077 52 1 0 2278 2329 404259819 404259768 1.210000e-14 91.6
7 TraesCS1D01G308300 chr1B 85.729 1878 123 63 540 2344 543581691 543579886 0.000000e+00 1849.0
8 TraesCS1D01G308300 chr1B 84.299 1675 145 58 667 2271 543741406 543739780 0.000000e+00 1528.0
9 TraesCS1D01G308300 chr1B 82.210 371 25 22 2428 2764 543739762 543739399 6.700000e-72 281.0
10 TraesCS1D01G308300 chr1B 95.385 65 3 0 593 657 543741572 543741508 1.560000e-18 104.0
11 TraesCS1D01G308300 chr1B 100.000 28 0 0 807 834 543741304 543741277 6.000000e-03 52.8
12 TraesCS1D01G308300 chr1A 83.893 1341 103 48 458 1733 499809714 499808422 0.000000e+00 1175.0
13 TraesCS1D01G308300 chr1A 82.291 1327 116 56 464 1733 499928221 499926957 0.000000e+00 1038.0
14 TraesCS1D01G308300 chr1A 90.559 572 25 10 1780 2344 499808283 499807734 0.000000e+00 730.0
15 TraesCS1D01G308300 chr1A 88.196 449 21 13 1837 2264 499926840 499926403 1.010000e-139 507.0
16 TraesCS1D01G308300 chr1A 87.042 409 29 12 2769 3171 142103776 142103386 1.040000e-119 440.0
17 TraesCS1D01G308300 chr1A 92.121 165 10 3 2569 2733 499926174 499926013 2.460000e-56 230.0
18 TraesCS1D01G308300 chr1A 91.892 74 6 0 1 74 499809983 499809910 1.560000e-18 104.0
19 TraesCS1D01G308300 chr3D 97.573 412 9 1 2760 3171 75139862 75139452 0.000000e+00 704.0
20 TraesCS1D01G308300 chr3D 92.000 50 4 0 2766 2815 606927449 606927498 1.580000e-08 71.3
21 TraesCS1D01G308300 chr7D 97.761 402 9 0 2767 3168 10858686 10858285 0.000000e+00 693.0
22 TraesCS1D01G308300 chr7D 93.750 48 3 0 2768 2815 4171627 4171580 4.390000e-09 73.1
23 TraesCS1D01G308300 chr4D 97.761 402 9 0 2770 3171 50421557 50421958 0.000000e+00 693.0
24 TraesCS1D01G308300 chr2D 97.548 367 9 0 2805 3171 444757571 444757937 2.080000e-176 628.0
25 TraesCS1D01G308300 chr3B 92.676 355 26 0 2817 3171 424683001 424683355 2.180000e-141 512.0
26 TraesCS1D01G308300 chr3B 89.577 355 37 0 2817 3171 424697293 424697647 4.820000e-123 451.0
27 TraesCS1D01G308300 chr3A 83.738 412 56 9 2768 3171 180073193 180072785 2.310000e-101 379.0
28 TraesCS1D01G308300 chr5D 80.857 350 37 16 2825 3168 533117811 533118136 6.790000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G308300 chr1D 404237841 404241011 3170 True 2703.000000 5014 100.000000 1 3171 2 chr1D.!!$R1 3170
1 TraesCS1D01G308300 chr1D 404259547 404261957 2410 True 425.520000 1086 90.871200 1 2740 5 chr1D.!!$R2 2739
2 TraesCS1D01G308300 chr1B 543579886 543581691 1805 True 1849.000000 1849 85.729000 540 2344 1 chr1B.!!$R1 1804
3 TraesCS1D01G308300 chr1B 543739399 543741572 2173 True 491.450000 1528 90.473500 593 2764 4 chr1B.!!$R2 2171
4 TraesCS1D01G308300 chr1A 499807734 499809983 2249 True 669.666667 1175 88.781333 1 2344 3 chr1A.!!$R2 2343
5 TraesCS1D01G308300 chr1A 499926013 499928221 2208 True 591.666667 1038 87.536000 464 2733 3 chr1A.!!$R3 2269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 1064 0.670162 CATTTCCCATGCGGTCATCC 59.33 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 2752 0.106819 AATTAGCCTGCCTGCTCTGG 60.107 55.0 0.0 0.0 41.68 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.954970 CAGGTGGCCAAGCACCGT 62.955 66.667 7.24 0.00 45.62 4.83
50 51 1.135402 GGCCAAGCACCGTGATTTTAG 60.135 52.381 1.65 0.00 0.00 1.85
57 58 3.709653 AGCACCGTGATTTTAGGAGGATA 59.290 43.478 1.65 0.00 0.00 2.59
71 72 3.200825 AGGAGGATAATGTGTGGGTTGAG 59.799 47.826 0.00 0.00 0.00 3.02
85 87 3.769844 TGGGTTGAGAAGTTAGCTAGGAG 59.230 47.826 0.00 0.00 0.00 3.69
97 99 6.754193 AGTTAGCTAGGAGAGAATAATGCAC 58.246 40.000 0.00 0.00 0.00 4.57
100 102 6.924913 AGCTAGGAGAGAATAATGCACATA 57.075 37.500 0.00 0.00 0.00 2.29
101 103 6.934056 AGCTAGGAGAGAATAATGCACATAG 58.066 40.000 0.00 0.00 0.00 2.23
477 532 2.227149 GCACATGACATTGCTTCACAGA 59.773 45.455 0.00 0.00 35.74 3.41
502 565 1.396996 GACGCGTTGTAAGATGCCATT 59.603 47.619 15.53 0.00 0.00 3.16
504 567 2.176369 CGCGTTGTAAGATGCCATTTG 58.824 47.619 0.00 0.00 0.00 2.32
704 868 5.400485 GCGATCAAAATGGCAAAAGCTATAG 59.600 40.000 0.00 0.00 36.68 1.31
876 1057 2.589798 AGCAATTCATTTCCCATGCG 57.410 45.000 0.00 0.00 38.74 4.73
878 1059 1.134729 GCAATTCATTTCCCATGCGGT 60.135 47.619 0.00 0.00 0.00 5.68
879 1060 2.813061 CAATTCATTTCCCATGCGGTC 58.187 47.619 0.00 0.00 0.00 4.79
880 1061 2.142356 ATTCATTTCCCATGCGGTCA 57.858 45.000 0.00 0.00 0.00 4.02
881 1062 2.142356 TTCATTTCCCATGCGGTCAT 57.858 45.000 0.00 0.00 0.00 3.06
882 1063 1.679139 TCATTTCCCATGCGGTCATC 58.321 50.000 0.00 0.00 0.00 2.92
883 1064 0.670162 CATTTCCCATGCGGTCATCC 59.330 55.000 0.00 0.00 0.00 3.51
911 1092 1.826096 GACAAGGAGGTGGAGTAGGAC 59.174 57.143 0.00 0.00 0.00 3.85
912 1093 1.433592 ACAAGGAGGTGGAGTAGGACT 59.566 52.381 0.00 0.00 0.00 3.85
913 1094 1.827969 CAAGGAGGTGGAGTAGGACTG 59.172 57.143 0.00 0.00 0.00 3.51
914 1095 1.085715 AGGAGGTGGAGTAGGACTGT 58.914 55.000 0.00 0.00 0.00 3.55
915 1096 2.285707 AGGAGGTGGAGTAGGACTGTA 58.714 52.381 0.00 0.00 0.00 2.74
916 1097 2.242708 AGGAGGTGGAGTAGGACTGTAG 59.757 54.545 0.00 0.00 0.00 2.74
917 1098 2.657143 GAGGTGGAGTAGGACTGTAGG 58.343 57.143 0.00 0.00 0.00 3.18
918 1099 2.241685 GAGGTGGAGTAGGACTGTAGGA 59.758 54.545 0.00 0.00 0.00 2.94
927 1108 3.246416 AGGACTGTAGGAGTTCACACT 57.754 47.619 0.00 0.00 33.83 3.55
988 1204 2.002018 AACCCCGGAGCAAACCAAGA 62.002 55.000 0.73 0.00 0.00 3.02
1003 1219 4.156455 ACCAAGATCACAAGTCACAACT 57.844 40.909 0.00 0.00 37.32 3.16
1014 1234 0.874607 GTCACAACTCCGTGCTCGTT 60.875 55.000 7.47 0.00 36.80 3.85
1253 1497 0.324645 GGGAACATGAACCCCTGCAT 60.325 55.000 16.96 0.00 40.19 3.96
1317 1564 1.226802 CGAGATGTGAGTGAGGCGG 60.227 63.158 0.00 0.00 0.00 6.13
1329 1579 4.473520 AGGCGGCACCGATCCTTG 62.474 66.667 14.43 0.00 46.52 3.61
1335 1585 1.749258 GCACCGATCCTTGTTCCCC 60.749 63.158 0.00 0.00 0.00 4.81
1358 1608 0.175073 ATACTGCTTCCGTTCCGTCC 59.825 55.000 0.00 0.00 0.00 4.79
1359 1609 1.880819 TACTGCTTCCGTTCCGTCCC 61.881 60.000 0.00 0.00 0.00 4.46
1377 1652 3.761752 GTCCCCTTCATCCGATTTTCAAA 59.238 43.478 0.00 0.00 0.00 2.69
1378 1653 4.219725 GTCCCCTTCATCCGATTTTCAAAA 59.780 41.667 0.00 0.00 0.00 2.44
1379 1654 5.022787 TCCCCTTCATCCGATTTTCAAAAT 58.977 37.500 0.00 0.00 0.00 1.82
1380 1655 5.483583 TCCCCTTCATCCGATTTTCAAAATT 59.516 36.000 0.00 0.00 0.00 1.82
1381 1656 6.013812 TCCCCTTCATCCGATTTTCAAAATTT 60.014 34.615 0.00 0.00 0.00 1.82
1382 1657 6.313658 CCCCTTCATCCGATTTTCAAAATTTC 59.686 38.462 0.00 0.00 0.00 2.17
1383 1658 6.873076 CCCTTCATCCGATTTTCAAAATTTCA 59.127 34.615 0.00 0.00 0.00 2.69
1384 1659 7.387397 CCCTTCATCCGATTTTCAAAATTTCAA 59.613 33.333 0.00 0.00 0.00 2.69
1390 1666 7.371936 TCCGATTTTCAAAATTTCAATACGGT 58.628 30.769 13.57 0.00 36.33 4.83
1391 1667 7.327275 TCCGATTTTCAAAATTTCAATACGGTG 59.673 33.333 13.57 0.00 36.33 4.94
1417 1693 3.868757 TGTTCTGTCAGAGTAATCGGG 57.131 47.619 2.12 0.00 0.00 5.14
1535 1829 2.827959 GATTGTTCCGTTGACGCCGC 62.828 60.000 0.00 0.00 38.18 6.53
1740 2055 2.380249 AGTCCATGATCTCCTCCCGATA 59.620 50.000 0.00 0.00 0.00 2.92
1762 2103 8.097904 CGATATTTTTCTTTTCAAGCATGTTCG 58.902 33.333 0.00 0.00 0.00 3.95
1776 2117 0.885879 TGTTCGGCTCGTACAGTGAT 59.114 50.000 0.00 0.00 32.76 3.06
1778 2119 1.918609 GTTCGGCTCGTACAGTGATTC 59.081 52.381 0.00 0.00 0.00 2.52
1813 2220 2.298729 ACAAGTCTGGCTCTGAAGTCTC 59.701 50.000 0.00 0.00 0.00 3.36
1971 2389 4.272261 TCTCTTCTCTCTCGACGATCAATG 59.728 45.833 0.00 0.00 0.00 2.82
1991 2409 6.766467 TCAATGAATCCAGTGATCTTCATCTG 59.234 38.462 12.30 12.16 41.76 2.90
2069 2500 3.693085 CAGATGGTCCCTTCAAGAACATG 59.307 47.826 0.00 0.00 41.72 3.21
2220 2667 0.248215 GCGCCAGTTCATGCATGTAC 60.248 55.000 24.31 24.31 0.00 2.90
2223 2670 2.541346 CGCCAGTTCATGCATGTACTAG 59.459 50.000 30.92 26.18 36.46 2.57
2224 2671 2.289002 GCCAGTTCATGCATGTACTAGC 59.711 50.000 29.90 29.90 36.46 3.42
2225 2672 3.801698 CCAGTTCATGCATGTACTAGCT 58.198 45.455 30.92 15.67 36.46 3.32
2226 2673 4.740634 GCCAGTTCATGCATGTACTAGCTA 60.741 45.833 33.34 11.79 38.82 3.32
2227 2674 4.747108 CCAGTTCATGCATGTACTAGCTAC 59.253 45.833 30.92 15.30 36.46 3.58
2228 2675 5.452496 CCAGTTCATGCATGTACTAGCTACT 60.452 44.000 30.92 16.81 36.46 2.57
2229 2676 6.045318 CAGTTCATGCATGTACTAGCTACTT 58.955 40.000 30.92 10.76 36.46 2.24
2230 2677 7.203218 CAGTTCATGCATGTACTAGCTACTTA 58.797 38.462 30.92 5.33 36.46 2.24
2231 2678 7.380870 CAGTTCATGCATGTACTAGCTACTTAG 59.619 40.741 30.92 16.11 36.46 2.18
2232 2679 6.332735 TCATGCATGTACTAGCTACTTAGG 57.667 41.667 25.43 0.00 0.00 2.69
2233 2680 5.833667 TCATGCATGTACTAGCTACTTAGGT 59.166 40.000 25.43 0.00 37.80 3.08
2271 2743 2.477863 GGTTAATTTAGCTGCGTGCCAG 60.478 50.000 0.00 0.00 44.23 4.85
2272 2744 2.107950 TAATTTAGCTGCGTGCCAGT 57.892 45.000 0.00 0.00 43.71 4.00
2273 2745 0.523072 AATTTAGCTGCGTGCCAGTG 59.477 50.000 0.00 0.00 43.71 3.66
2274 2746 1.926511 ATTTAGCTGCGTGCCAGTGC 61.927 55.000 0.00 0.00 43.71 4.40
2329 2815 1.446099 TGCACAAGCCGAGATCGAC 60.446 57.895 3.31 0.00 41.13 4.20
2457 2954 4.035112 ACTTCCGGTACCTAATGGAATCA 58.965 43.478 16.57 0.00 39.60 2.57
2460 2957 2.132762 CGGTACCTAATGGAATCACGC 58.867 52.381 10.90 0.00 37.04 5.34
2475 2972 0.179240 CACGCTTAAGTTGCTGCTCG 60.179 55.000 4.02 0.00 0.00 5.03
2476 2973 0.319555 ACGCTTAAGTTGCTGCTCGA 60.320 50.000 4.02 0.00 0.00 4.04
2477 2974 1.002366 CGCTTAAGTTGCTGCTCGAT 58.998 50.000 4.02 0.00 0.00 3.59
2478 2975 1.005557 CGCTTAAGTTGCTGCTCGATC 60.006 52.381 4.02 0.00 0.00 3.69
2479 2976 1.005557 GCTTAAGTTGCTGCTCGATCG 60.006 52.381 9.36 9.36 0.00 3.69
2480 2977 2.530177 CTTAAGTTGCTGCTCGATCGA 58.470 47.619 18.32 18.32 0.00 3.59
2484 2981 1.134995 AGTTGCTGCTCGATCGAATCA 60.135 47.619 19.92 17.55 0.00 2.57
2487 2987 2.554142 TGCTGCTCGATCGAATCAATT 58.446 42.857 19.92 0.00 0.00 2.32
2493 2993 4.201812 TGCTCGATCGAATCAATTTTCACC 60.202 41.667 19.92 0.00 0.00 4.02
2501 3001 4.613622 CGAATCAATTTTCACCGAGTTGCT 60.614 41.667 0.00 0.00 0.00 3.91
2525 3025 1.338020 CTTTGGGTGCTTGAGTTGACC 59.662 52.381 0.00 0.00 0.00 4.02
2555 3055 0.935196 GTTTTCTGTTCCTGTCGCGT 59.065 50.000 5.77 0.00 0.00 6.01
2558 3058 0.596600 TTCTGTTCCTGTCGCGTGTC 60.597 55.000 5.77 0.00 0.00 3.67
2620 3140 9.847224 TTAGGAGTACTTCAGAACAGAAAATTT 57.153 29.630 3.42 0.00 0.00 1.82
2667 3187 7.851472 GCTCTAGAGTTAGACAAACAAACAAAC 59.149 37.037 20.75 0.00 40.83 2.93
2668 3188 8.780846 TCTAGAGTTAGACAAACAAACAAACA 57.219 30.769 0.00 0.00 40.83 2.83
2764 3294 0.321298 GAGCGGGCACTACCTTTTGA 60.321 55.000 0.00 0.00 39.10 2.69
2765 3295 0.605589 AGCGGGCACTACCTTTTGAC 60.606 55.000 0.00 0.00 39.10 3.18
2766 3296 0.605589 GCGGGCACTACCTTTTGACT 60.606 55.000 0.00 0.00 39.10 3.41
2767 3297 1.892209 CGGGCACTACCTTTTGACTT 58.108 50.000 0.00 0.00 39.10 3.01
2768 3298 2.872842 GCGGGCACTACCTTTTGACTTA 60.873 50.000 0.00 0.00 39.10 2.24
2769 3299 3.000727 CGGGCACTACCTTTTGACTTAG 58.999 50.000 0.00 0.00 39.10 2.18
2770 3300 3.344515 GGGCACTACCTTTTGACTTAGG 58.655 50.000 0.00 0.00 39.10 2.69
2771 3301 3.344515 GGCACTACCTTTTGACTTAGGG 58.655 50.000 0.00 0.00 35.79 3.53
2772 3302 2.747989 GCACTACCTTTTGACTTAGGGC 59.252 50.000 0.00 0.00 33.99 5.19
2773 3303 3.809324 GCACTACCTTTTGACTTAGGGCA 60.809 47.826 0.00 0.00 40.17 5.36
2774 3304 3.751698 CACTACCTTTTGACTTAGGGCAC 59.248 47.826 0.00 0.00 35.79 5.01
2775 3305 3.651423 ACTACCTTTTGACTTAGGGCACT 59.349 43.478 0.00 0.00 35.79 4.40
2776 3306 2.863809 ACCTTTTGACTTAGGGCACTG 58.136 47.619 0.00 0.00 35.79 3.66
2777 3307 2.441750 ACCTTTTGACTTAGGGCACTGA 59.558 45.455 0.00 0.00 35.79 3.41
2778 3308 3.074538 ACCTTTTGACTTAGGGCACTGAT 59.925 43.478 0.00 0.00 35.79 2.90
2779 3309 3.691609 CCTTTTGACTTAGGGCACTGATC 59.308 47.826 0.00 0.00 0.00 2.92
2780 3310 4.566488 CCTTTTGACTTAGGGCACTGATCT 60.566 45.833 0.00 0.00 0.00 2.75
2781 3311 3.616956 TTGACTTAGGGCACTGATCTG 57.383 47.619 0.00 0.00 0.00 2.90
2782 3312 1.208052 TGACTTAGGGCACTGATCTGC 59.792 52.381 0.00 0.00 36.33 4.26
2783 3313 0.176680 ACTTAGGGCACTGATCTGCG 59.823 55.000 0.00 0.00 38.12 5.18
2789 3319 2.887568 CACTGATCTGCGCCGGTC 60.888 66.667 4.18 4.63 0.00 4.79
2790 3320 4.498520 ACTGATCTGCGCCGGTCG 62.499 66.667 4.18 12.98 42.12 4.79
2791 3321 4.193334 CTGATCTGCGCCGGTCGA 62.193 66.667 20.06 4.73 41.67 4.20
2792 3322 4.492160 TGATCTGCGCCGGTCGAC 62.492 66.667 20.06 7.13 41.67 4.20
2819 3349 4.944372 CGCTCCGCCGGTCATACC 62.944 72.222 1.63 0.00 34.05 2.73
2820 3350 3.845259 GCTCCGCCGGTCATACCA 61.845 66.667 1.63 0.00 38.47 3.25
2821 3351 2.417516 CTCCGCCGGTCATACCAG 59.582 66.667 1.63 0.00 38.47 4.00
2822 3352 3.151710 TCCGCCGGTCATACCAGG 61.152 66.667 1.63 0.39 38.47 4.45
2823 3353 3.151710 CCGCCGGTCATACCAGGA 61.152 66.667 1.90 0.00 38.47 3.86
2824 3354 2.106332 CGCCGGTCATACCAGGAC 59.894 66.667 1.90 0.00 38.47 3.85
2828 3358 3.305314 GGTCATACCAGGACCGCA 58.695 61.111 0.00 0.00 44.80 5.69
2829 3359 1.144057 GGTCATACCAGGACCGCAG 59.856 63.158 0.00 0.00 44.80 5.18
2844 3374 1.742761 CGCAGGATGACTCCATTTGT 58.257 50.000 0.00 0.00 44.79 2.83
2845 3375 1.399440 CGCAGGATGACTCCATTTGTG 59.601 52.381 0.00 0.00 44.79 3.33
2846 3376 1.747355 GCAGGATGACTCCATTTGTGG 59.253 52.381 0.00 0.00 44.79 4.17
2847 3377 1.747355 CAGGATGACTCCATTTGTGGC 59.253 52.381 0.00 0.00 44.79 5.01
2848 3378 1.106285 GGATGACTCCATTTGTGGCC 58.894 55.000 0.00 0.00 41.64 5.36
2849 3379 0.734889 GATGACTCCATTTGTGGCCG 59.265 55.000 0.00 0.00 32.09 6.13
2850 3380 0.038166 ATGACTCCATTTGTGGCCGT 59.962 50.000 0.00 0.00 0.00 5.68
2851 3381 0.179004 TGACTCCATTTGTGGCCGTT 60.179 50.000 0.00 0.00 0.00 4.44
2852 3382 1.072489 TGACTCCATTTGTGGCCGTTA 59.928 47.619 0.00 0.00 0.00 3.18
2853 3383 1.737793 GACTCCATTTGTGGCCGTTAG 59.262 52.381 0.00 0.00 0.00 2.34
2854 3384 1.349688 ACTCCATTTGTGGCCGTTAGA 59.650 47.619 0.00 0.00 0.00 2.10
2855 3385 2.026262 ACTCCATTTGTGGCCGTTAGAT 60.026 45.455 0.00 0.00 0.00 1.98
2856 3386 3.016736 CTCCATTTGTGGCCGTTAGATT 58.983 45.455 0.00 0.00 0.00 2.40
2857 3387 4.196193 CTCCATTTGTGGCCGTTAGATTA 58.804 43.478 0.00 0.00 0.00 1.75
2858 3388 4.196193 TCCATTTGTGGCCGTTAGATTAG 58.804 43.478 0.00 0.00 0.00 1.73
2859 3389 4.080807 TCCATTTGTGGCCGTTAGATTAGA 60.081 41.667 0.00 0.00 0.00 2.10
2860 3390 4.638421 CCATTTGTGGCCGTTAGATTAGAA 59.362 41.667 0.00 0.00 0.00 2.10
2861 3391 5.299279 CCATTTGTGGCCGTTAGATTAGAAT 59.701 40.000 0.00 0.00 0.00 2.40
2862 3392 6.430451 CATTTGTGGCCGTTAGATTAGAATC 58.570 40.000 0.00 0.00 35.64 2.52
2863 3393 4.067972 TGTGGCCGTTAGATTAGAATCC 57.932 45.455 0.00 0.00 36.04 3.01
2864 3394 3.181458 TGTGGCCGTTAGATTAGAATCCC 60.181 47.826 0.00 0.00 36.04 3.85
2865 3395 3.042682 TGGCCGTTAGATTAGAATCCCA 58.957 45.455 0.00 0.00 36.04 4.37
2866 3396 3.181458 TGGCCGTTAGATTAGAATCCCAC 60.181 47.826 0.00 0.00 36.04 4.61
2867 3397 3.057734 GCCGTTAGATTAGAATCCCACG 58.942 50.000 13.26 13.26 39.34 4.94
2868 3398 3.492137 GCCGTTAGATTAGAATCCCACGT 60.492 47.826 16.59 0.00 38.61 4.49
2869 3399 4.296690 CCGTTAGATTAGAATCCCACGTC 58.703 47.826 16.59 0.00 38.61 4.34
2870 3400 4.202080 CCGTTAGATTAGAATCCCACGTCA 60.202 45.833 16.59 0.00 38.61 4.35
2871 3401 5.509163 CCGTTAGATTAGAATCCCACGTCAT 60.509 44.000 16.59 0.00 38.61 3.06
2872 3402 5.629849 CGTTAGATTAGAATCCCACGTCATC 59.370 44.000 12.47 0.00 36.95 2.92
2873 3403 6.515200 CGTTAGATTAGAATCCCACGTCATCT 60.515 42.308 12.47 0.00 36.95 2.90
2874 3404 5.878406 AGATTAGAATCCCACGTCATCTT 57.122 39.130 0.00 0.00 36.04 2.40
2875 3405 6.240549 AGATTAGAATCCCACGTCATCTTT 57.759 37.500 0.00 0.00 36.04 2.52
2876 3406 6.653989 AGATTAGAATCCCACGTCATCTTTT 58.346 36.000 0.00 0.00 36.04 2.27
2877 3407 6.763610 AGATTAGAATCCCACGTCATCTTTTC 59.236 38.462 0.00 0.00 36.04 2.29
2878 3408 3.610911 AGAATCCCACGTCATCTTTTCC 58.389 45.455 0.00 0.00 0.00 3.13
2879 3409 2.420058 ATCCCACGTCATCTTTTCCC 57.580 50.000 0.00 0.00 0.00 3.97
2880 3410 1.358152 TCCCACGTCATCTTTTCCCT 58.642 50.000 0.00 0.00 0.00 4.20
2881 3411 1.702957 TCCCACGTCATCTTTTCCCTT 59.297 47.619 0.00 0.00 0.00 3.95
2882 3412 2.084546 CCCACGTCATCTTTTCCCTTC 58.915 52.381 0.00 0.00 0.00 3.46
2883 3413 2.084546 CCACGTCATCTTTTCCCTTCC 58.915 52.381 0.00 0.00 0.00 3.46
2884 3414 2.084546 CACGTCATCTTTTCCCTTCCC 58.915 52.381 0.00 0.00 0.00 3.97
2885 3415 1.004394 ACGTCATCTTTTCCCTTCCCC 59.996 52.381 0.00 0.00 0.00 4.81
2886 3416 1.004277 CGTCATCTTTTCCCTTCCCCA 59.996 52.381 0.00 0.00 0.00 4.96
2887 3417 2.447443 GTCATCTTTTCCCTTCCCCAC 58.553 52.381 0.00 0.00 0.00 4.61
2888 3418 1.357761 TCATCTTTTCCCTTCCCCACC 59.642 52.381 0.00 0.00 0.00 4.61
2889 3419 0.331616 ATCTTTTCCCTTCCCCACCG 59.668 55.000 0.00 0.00 0.00 4.94
2890 3420 1.977009 CTTTTCCCTTCCCCACCGC 60.977 63.158 0.00 0.00 0.00 5.68
2891 3421 3.516949 TTTTCCCTTCCCCACCGCC 62.517 63.158 0.00 0.00 0.00 6.13
2892 3422 4.995058 TTCCCTTCCCCACCGCCT 62.995 66.667 0.00 0.00 0.00 5.52
2896 3426 4.452733 CTTCCCCACCGCCTCGTC 62.453 72.222 0.00 0.00 0.00 4.20
2900 3430 4.135153 CCCACCGCCTCGTCTCAG 62.135 72.222 0.00 0.00 0.00 3.35
2901 3431 3.062466 CCACCGCCTCGTCTCAGA 61.062 66.667 0.00 0.00 0.00 3.27
2902 3432 2.418910 CCACCGCCTCGTCTCAGAT 61.419 63.158 0.00 0.00 0.00 2.90
2903 3433 1.064946 CACCGCCTCGTCTCAGATC 59.935 63.158 0.00 0.00 0.00 2.75
2904 3434 1.378646 ACCGCCTCGTCTCAGATCA 60.379 57.895 0.00 0.00 0.00 2.92
2905 3435 1.358402 CCGCCTCGTCTCAGATCAG 59.642 63.158 0.00 0.00 0.00 2.90
2906 3436 1.098129 CCGCCTCGTCTCAGATCAGA 61.098 60.000 0.00 0.00 0.00 3.27
2907 3437 0.950836 CGCCTCGTCTCAGATCAGAT 59.049 55.000 0.00 0.00 0.00 2.90
2908 3438 1.069296 CGCCTCGTCTCAGATCAGATC 60.069 57.143 1.64 1.64 0.00 2.75
2909 3439 1.069296 GCCTCGTCTCAGATCAGATCG 60.069 57.143 4.67 1.21 0.00 3.69
2910 3440 2.488952 CCTCGTCTCAGATCAGATCGA 58.511 52.381 4.67 12.27 0.00 3.59
2911 3441 2.480037 CCTCGTCTCAGATCAGATCGAG 59.520 54.545 23.00 23.00 40.24 4.04
2912 3442 3.389221 CTCGTCTCAGATCAGATCGAGA 58.611 50.000 24.37 21.40 41.52 4.04
2913 3443 3.996363 CTCGTCTCAGATCAGATCGAGAT 59.004 47.826 25.01 3.73 41.52 2.75
2914 3444 5.140747 TCGTCTCAGATCAGATCGAGATA 57.859 43.478 25.01 18.08 39.35 1.98
2915 3445 5.167845 TCGTCTCAGATCAGATCGAGATAG 58.832 45.833 25.01 22.15 39.35 2.08
2916 3446 5.047660 TCGTCTCAGATCAGATCGAGATAGA 60.048 44.000 25.01 23.25 39.35 1.98
2917 3447 5.812127 CGTCTCAGATCAGATCGAGATAGAT 59.188 44.000 25.01 0.00 39.35 1.98
2918 3448 6.237915 CGTCTCAGATCAGATCGAGATAGATG 60.238 46.154 25.01 16.44 39.35 2.90
2919 3449 6.037500 GTCTCAGATCAGATCGAGATAGATGG 59.962 46.154 25.01 9.55 39.35 3.51
2920 3450 5.192176 TCAGATCAGATCGAGATAGATGGG 58.808 45.833 4.67 0.25 0.00 4.00
2921 3451 5.045286 TCAGATCAGATCGAGATAGATGGGA 60.045 44.000 4.67 1.99 0.00 4.37
2922 3452 5.651576 CAGATCAGATCGAGATAGATGGGAA 59.348 44.000 4.67 0.00 0.00 3.97
2923 3453 5.652014 AGATCAGATCGAGATAGATGGGAAC 59.348 44.000 4.67 0.00 0.00 3.62
2935 3465 3.886324 TGGGAACAACGTTGACCTT 57.114 47.368 33.66 18.10 37.44 3.50
2936 3466 1.670791 TGGGAACAACGTTGACCTTC 58.329 50.000 33.66 24.39 37.44 3.46
2937 3467 1.210967 TGGGAACAACGTTGACCTTCT 59.789 47.619 33.66 8.21 37.44 2.85
2938 3468 1.602377 GGGAACAACGTTGACCTTCTG 59.398 52.381 33.66 6.68 0.00 3.02
2939 3469 2.285977 GGAACAACGTTGACCTTCTGT 58.714 47.619 33.66 7.41 0.00 3.41
2940 3470 3.460103 GGAACAACGTTGACCTTCTGTA 58.540 45.455 33.66 0.00 0.00 2.74
2941 3471 3.493503 GGAACAACGTTGACCTTCTGTAG 59.506 47.826 33.66 3.74 0.00 2.74
2942 3472 4.365723 GAACAACGTTGACCTTCTGTAGA 58.634 43.478 33.66 0.00 0.00 2.59
2943 3473 3.714391 ACAACGTTGACCTTCTGTAGAC 58.286 45.455 33.66 0.00 0.00 2.59
2944 3474 3.131577 ACAACGTTGACCTTCTGTAGACA 59.868 43.478 33.66 0.00 0.00 3.41
2945 3475 4.116961 CAACGTTGACCTTCTGTAGACAA 58.883 43.478 23.90 0.00 0.00 3.18
2946 3476 4.395959 ACGTTGACCTTCTGTAGACAAA 57.604 40.909 0.00 0.00 0.00 2.83
2947 3477 4.117685 ACGTTGACCTTCTGTAGACAAAC 58.882 43.478 0.00 0.00 0.00 2.93
2948 3478 4.142004 ACGTTGACCTTCTGTAGACAAACT 60.142 41.667 0.00 0.00 0.00 2.66
2949 3479 4.209288 CGTTGACCTTCTGTAGACAAACTG 59.791 45.833 0.00 0.00 0.00 3.16
2950 3480 3.728845 TGACCTTCTGTAGACAAACTGC 58.271 45.455 0.00 0.00 0.00 4.40
2951 3481 3.067833 GACCTTCTGTAGACAAACTGCC 58.932 50.000 0.00 0.00 0.00 4.85
2952 3482 2.224548 ACCTTCTGTAGACAAACTGCCC 60.225 50.000 0.00 0.00 0.00 5.36
2953 3483 2.427506 CTTCTGTAGACAAACTGCCCC 58.572 52.381 0.00 0.00 0.00 5.80
2954 3484 1.729586 TCTGTAGACAAACTGCCCCT 58.270 50.000 0.00 0.00 0.00 4.79
2955 3485 1.623811 TCTGTAGACAAACTGCCCCTC 59.376 52.381 0.00 0.00 0.00 4.30
2956 3486 0.320374 TGTAGACAAACTGCCCCTCG 59.680 55.000 0.00 0.00 0.00 4.63
2957 3487 1.019805 GTAGACAAACTGCCCCTCGC 61.020 60.000 0.00 0.00 38.31 5.03
2967 3497 4.785453 CCCCTCGCAGGTTGCCTC 62.785 72.222 0.00 0.00 41.12 4.70
2969 3499 4.379243 CCTCGCAGGTTGCCTCGT 62.379 66.667 0.00 0.00 41.12 4.18
2970 3500 2.811317 CTCGCAGGTTGCCTCGTC 60.811 66.667 0.00 0.00 41.12 4.20
2971 3501 4.717629 TCGCAGGTTGCCTCGTCG 62.718 66.667 0.00 0.00 41.12 5.12
2986 3516 4.634703 TCGGCGGCAACACACCAT 62.635 61.111 10.53 0.00 0.00 3.55
2987 3517 4.101790 CGGCGGCAACACACCATC 62.102 66.667 10.53 0.00 0.00 3.51
2988 3518 2.672996 GGCGGCAACACACCATCT 60.673 61.111 3.07 0.00 0.00 2.90
2989 3519 2.690778 GGCGGCAACACACCATCTC 61.691 63.158 3.07 0.00 0.00 2.75
2990 3520 3.027170 GCGGCAACACACCATCTCG 62.027 63.158 0.00 0.00 0.00 4.04
2991 3521 2.870372 GGCAACACACCATCTCGC 59.130 61.111 0.00 0.00 0.00 5.03
2992 3522 2.690778 GGCAACACACCATCTCGCC 61.691 63.158 0.00 0.00 0.00 5.54
2993 3523 1.965930 GCAACACACCATCTCGCCA 60.966 57.895 0.00 0.00 0.00 5.69
2994 3524 1.308069 GCAACACACCATCTCGCCAT 61.308 55.000 0.00 0.00 0.00 4.40
2995 3525 0.448990 CAACACACCATCTCGCCATG 59.551 55.000 0.00 0.00 0.00 3.66
2997 3527 2.124570 ACACCATCTCGCCATGGC 60.125 61.111 27.67 27.67 46.71 4.40
2998 3528 2.903855 CACCATCTCGCCATGGCC 60.904 66.667 30.79 13.37 46.71 5.36
2999 3529 4.552365 ACCATCTCGCCATGGCCG 62.552 66.667 30.79 24.04 46.71 6.13
3000 3530 4.552365 CCATCTCGCCATGGCCGT 62.552 66.667 30.79 11.39 37.12 5.68
3001 3531 2.969238 CATCTCGCCATGGCCGTC 60.969 66.667 30.79 3.87 37.98 4.79
3002 3532 4.592192 ATCTCGCCATGGCCGTCG 62.592 66.667 30.79 16.82 37.98 5.12
3009 3539 3.630148 CATGGCCGTCGACGCATC 61.630 66.667 31.73 21.40 38.18 3.91
3010 3540 4.141965 ATGGCCGTCGACGCATCA 62.142 61.111 31.73 25.72 38.18 3.07
3022 3552 4.481112 GCATCACCGGCGCCTTTG 62.481 66.667 26.68 20.70 0.00 2.77
3023 3553 4.481112 CATCACCGGCGCCTTTGC 62.481 66.667 26.68 0.00 0.00 3.68
3043 3573 4.657824 CCGTCGCCTTCACCACGT 62.658 66.667 0.00 0.00 0.00 4.49
3044 3574 3.103911 CGTCGCCTTCACCACGTC 61.104 66.667 0.00 0.00 0.00 4.34
3045 3575 2.737376 GTCGCCTTCACCACGTCC 60.737 66.667 0.00 0.00 0.00 4.79
3046 3576 3.228017 TCGCCTTCACCACGTCCA 61.228 61.111 0.00 0.00 0.00 4.02
3047 3577 3.041940 CGCCTTCACCACGTCCAC 61.042 66.667 0.00 0.00 0.00 4.02
3048 3578 2.668550 GCCTTCACCACGTCCACC 60.669 66.667 0.00 0.00 0.00 4.61
3049 3579 2.032071 CCTTCACCACGTCCACCC 59.968 66.667 0.00 0.00 0.00 4.61
3050 3580 2.516888 CCTTCACCACGTCCACCCT 61.517 63.158 0.00 0.00 0.00 4.34
3051 3581 1.004918 CTTCACCACGTCCACCCTC 60.005 63.158 0.00 0.00 0.00 4.30
3052 3582 1.458777 TTCACCACGTCCACCCTCT 60.459 57.895 0.00 0.00 0.00 3.69
3053 3583 1.469335 TTCACCACGTCCACCCTCTC 61.469 60.000 0.00 0.00 0.00 3.20
3054 3584 2.989824 ACCACGTCCACCCTCTCG 60.990 66.667 0.00 0.00 0.00 4.04
3055 3585 4.436998 CCACGTCCACCCTCTCGC 62.437 72.222 0.00 0.00 0.00 5.03
3056 3586 4.436998 CACGTCCACCCTCTCGCC 62.437 72.222 0.00 0.00 0.00 5.54
3057 3587 4.988716 ACGTCCACCCTCTCGCCA 62.989 66.667 0.00 0.00 0.00 5.69
3058 3588 3.461773 CGTCCACCCTCTCGCCAT 61.462 66.667 0.00 0.00 0.00 4.40
3059 3589 2.501610 GTCCACCCTCTCGCCATC 59.498 66.667 0.00 0.00 0.00 3.51
3060 3590 2.764128 TCCACCCTCTCGCCATCC 60.764 66.667 0.00 0.00 0.00 3.51
3061 3591 4.227134 CCACCCTCTCGCCATCCG 62.227 72.222 0.00 0.00 38.61 4.18
3062 3592 3.461773 CACCCTCTCGCCATCCGT 61.462 66.667 0.00 0.00 38.35 4.69
3063 3593 2.683933 ACCCTCTCGCCATCCGTT 60.684 61.111 0.00 0.00 38.35 4.44
3064 3594 2.107141 CCCTCTCGCCATCCGTTC 59.893 66.667 0.00 0.00 38.35 3.95
3065 3595 2.278857 CCTCTCGCCATCCGTTCG 60.279 66.667 0.00 0.00 38.35 3.95
3066 3596 2.490217 CTCTCGCCATCCGTTCGT 59.510 61.111 0.00 0.00 38.35 3.85
3067 3597 1.874019 CTCTCGCCATCCGTTCGTG 60.874 63.158 0.00 0.00 38.35 4.35
3068 3598 2.180769 CTCGCCATCCGTTCGTGA 59.819 61.111 0.00 0.00 38.35 4.35
3069 3599 1.226974 CTCGCCATCCGTTCGTGAT 60.227 57.895 0.00 0.00 38.35 3.06
3070 3600 1.209275 CTCGCCATCCGTTCGTGATC 61.209 60.000 0.00 0.00 38.35 2.92
3071 3601 1.226974 CGCCATCCGTTCGTGATCT 60.227 57.895 0.00 0.00 0.00 2.75
3072 3602 0.030235 CGCCATCCGTTCGTGATCTA 59.970 55.000 0.00 0.00 0.00 1.98
3073 3603 1.488527 GCCATCCGTTCGTGATCTAC 58.511 55.000 0.00 0.00 0.00 2.59
3083 3613 2.998668 CGTGATCTACGCATCAAACC 57.001 50.000 5.07 0.00 46.92 3.27
3084 3614 2.267426 CGTGATCTACGCATCAAACCA 58.733 47.619 5.07 0.00 46.92 3.67
3085 3615 2.029244 CGTGATCTACGCATCAAACCAC 59.971 50.000 5.07 0.00 46.92 4.16
3086 3616 2.029244 GTGATCTACGCATCAAACCACG 59.971 50.000 0.00 0.00 34.50 4.94
3087 3617 1.004927 GATCTACGCATCAAACCACGC 60.005 52.381 0.00 0.00 0.00 5.34
3088 3618 1.017177 TCTACGCATCAAACCACGCC 61.017 55.000 0.00 0.00 0.00 5.68
3089 3619 2.291508 CTACGCATCAAACCACGCCG 62.292 60.000 0.00 0.00 0.00 6.46
3090 3620 3.722295 CGCATCAAACCACGCCGT 61.722 61.111 0.00 0.00 0.00 5.68
3091 3621 2.642700 GCATCAAACCACGCCGTT 59.357 55.556 0.00 0.00 0.00 4.44
3092 3622 1.729131 GCATCAAACCACGCCGTTG 60.729 57.895 0.00 0.00 0.00 4.10
3093 3623 1.652012 CATCAAACCACGCCGTTGT 59.348 52.632 0.00 0.00 0.00 3.32
3094 3624 0.660005 CATCAAACCACGCCGTTGTG 60.660 55.000 0.00 0.00 39.60 3.33
3120 3650 3.722295 CGTCGCCGGTTGCAACAT 61.722 61.111 29.55 0.00 41.33 2.71
3121 3651 2.384309 CGTCGCCGGTTGCAACATA 61.384 57.895 29.55 8.04 41.33 2.29
3122 3652 1.701545 CGTCGCCGGTTGCAACATAT 61.702 55.000 29.55 0.00 41.33 1.78
3123 3653 0.450184 GTCGCCGGTTGCAACATATT 59.550 50.000 29.55 0.00 41.33 1.28
3124 3654 0.449786 TCGCCGGTTGCAACATATTG 59.550 50.000 29.55 15.22 41.33 1.90
3125 3655 0.170116 CGCCGGTTGCAACATATTGT 59.830 50.000 29.55 0.00 41.33 2.71
3126 3656 1.398739 CGCCGGTTGCAACATATTGTA 59.601 47.619 29.55 0.00 41.33 2.41
3127 3657 2.789779 CGCCGGTTGCAACATATTGTAC 60.790 50.000 29.55 9.73 41.33 2.90
3128 3658 2.162608 GCCGGTTGCAACATATTGTACA 59.837 45.455 29.55 0.00 40.77 2.90
3129 3659 3.753842 CCGGTTGCAACATATTGTACAC 58.246 45.455 29.55 8.33 38.17 2.90
3130 3660 3.438781 CCGGTTGCAACATATTGTACACT 59.561 43.478 29.55 0.00 38.17 3.55
3131 3661 4.436852 CCGGTTGCAACATATTGTACACTC 60.437 45.833 29.55 7.63 38.17 3.51
3132 3662 4.647964 GGTTGCAACATATTGTACACTCG 58.352 43.478 29.55 0.00 38.17 4.18
3133 3663 4.088648 GTTGCAACATATTGTACACTCGC 58.911 43.478 24.52 0.00 38.17 5.03
3134 3664 2.675844 TGCAACATATTGTACACTCGCC 59.324 45.455 0.00 0.00 38.17 5.54
3135 3665 2.285602 GCAACATATTGTACACTCGCCG 60.286 50.000 0.00 0.00 38.17 6.46
3136 3666 2.927477 CAACATATTGTACACTCGCCGT 59.073 45.455 0.00 0.00 0.00 5.68
3137 3667 2.805845 ACATATTGTACACTCGCCGTC 58.194 47.619 0.00 0.00 0.00 4.79
3138 3668 1.779157 CATATTGTACACTCGCCGTCG 59.221 52.381 0.00 0.00 0.00 5.12
3139 3669 0.523968 TATTGTACACTCGCCGTCGC 60.524 55.000 0.00 0.00 35.26 5.19
3140 3670 2.480853 ATTGTACACTCGCCGTCGCA 62.481 55.000 0.00 0.00 35.26 5.10
3141 3671 2.874780 GTACACTCGCCGTCGCAG 60.875 66.667 0.00 0.00 35.26 5.18
3142 3672 4.771356 TACACTCGCCGTCGCAGC 62.771 66.667 0.00 0.00 35.26 5.25
3151 3681 4.803426 CGTCGCAGCCCTCCTGTC 62.803 72.222 0.00 0.00 43.71 3.51
3152 3682 4.459089 GTCGCAGCCCTCCTGTCC 62.459 72.222 0.00 0.00 43.71 4.02
3155 3685 4.459089 GCAGCCCTCCTGTCCGTC 62.459 72.222 0.00 0.00 43.71 4.79
3156 3686 2.681778 CAGCCCTCCTGTCCGTCT 60.682 66.667 0.00 0.00 36.79 4.18
3157 3687 2.363147 AGCCCTCCTGTCCGTCTC 60.363 66.667 0.00 0.00 0.00 3.36
3158 3688 2.363147 GCCCTCCTGTCCGTCTCT 60.363 66.667 0.00 0.00 0.00 3.10
3159 3689 2.716017 GCCCTCCTGTCCGTCTCTG 61.716 68.421 0.00 0.00 0.00 3.35
3160 3690 2.055042 CCCTCCTGTCCGTCTCTGG 61.055 68.421 0.00 0.00 0.00 3.86
3161 3691 1.304547 CCTCCTGTCCGTCTCTGGT 60.305 63.158 0.00 0.00 0.00 4.00
3162 3692 1.599606 CCTCCTGTCCGTCTCTGGTG 61.600 65.000 0.00 0.00 0.00 4.17
3163 3693 2.219325 CTCCTGTCCGTCTCTGGTGC 62.219 65.000 0.00 0.00 0.00 5.01
3164 3694 2.574018 CCTGTCCGTCTCTGGTGCA 61.574 63.158 0.00 0.00 0.00 4.57
3165 3695 1.080230 CTGTCCGTCTCTGGTGCAG 60.080 63.158 0.00 0.00 0.00 4.41
3166 3696 2.433318 GTCCGTCTCTGGTGCAGC 60.433 66.667 9.47 9.47 0.00 5.25
3167 3697 2.601666 TCCGTCTCTGGTGCAGCT 60.602 61.111 18.08 0.00 0.00 4.24
3168 3698 2.210013 TCCGTCTCTGGTGCAGCTT 61.210 57.895 18.08 0.00 0.00 3.74
3169 3699 1.739562 CCGTCTCTGGTGCAGCTTC 60.740 63.158 18.08 2.36 0.00 3.86
3170 3700 2.091112 CGTCTCTGGTGCAGCTTCG 61.091 63.158 18.08 10.25 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.069088 ACCCACACATTATCCTCCTAAAATCA 60.069 38.462 0.00 0.00 0.00 2.57
50 51 3.199946 TCTCAACCCACACATTATCCTCC 59.800 47.826 0.00 0.00 0.00 4.30
57 58 3.821033 GCTAACTTCTCAACCCACACATT 59.179 43.478 0.00 0.00 0.00 2.71
71 72 7.383843 GTGCATTATTCTCTCCTAGCTAACTTC 59.616 40.741 0.00 0.00 0.00 3.01
112 167 4.737054 TCTTTTCTATGGTACCGAACGTC 58.263 43.478 7.57 0.00 0.00 4.34
114 169 6.657836 ATTTCTTTTCTATGGTACCGAACG 57.342 37.500 7.57 0.00 0.00 3.95
456 511 2.227149 TCTGTGAAGCAATGTCATGTGC 59.773 45.455 10.30 10.30 41.22 4.57
477 532 2.348666 GCATCTTACAACGCGTCTGAAT 59.651 45.455 14.44 0.00 0.00 2.57
502 565 3.000041 GTTGTCCGAGTCATATGTGCAA 59.000 45.455 1.90 0.00 0.00 4.08
504 567 2.604914 CTGTTGTCCGAGTCATATGTGC 59.395 50.000 1.90 0.00 0.00 4.57
704 868 6.256686 ACTTATCGTCGTTGTTAGAGTCATC 58.743 40.000 0.00 0.00 0.00 2.92
861 1042 2.142356 TGACCGCATGGGAAATGAAT 57.858 45.000 12.02 0.00 40.75 2.57
864 1045 0.670162 GGATGACCGCATGGGAAATG 59.330 55.000 12.02 0.00 40.75 2.32
876 1057 2.154462 CTTGTCAACACTGGGATGACC 58.846 52.381 16.36 1.27 42.12 4.02
878 1059 2.038952 CTCCTTGTCAACACTGGGATGA 59.961 50.000 0.00 0.00 0.00 2.92
879 1060 2.430465 CTCCTTGTCAACACTGGGATG 58.570 52.381 0.00 0.00 0.00 3.51
880 1061 1.352352 CCTCCTTGTCAACACTGGGAT 59.648 52.381 0.00 0.00 0.00 3.85
881 1062 0.764890 CCTCCTTGTCAACACTGGGA 59.235 55.000 0.00 0.00 0.00 4.37
882 1063 0.474184 ACCTCCTTGTCAACACTGGG 59.526 55.000 2.71 0.00 0.00 4.45
883 1064 1.597742 CACCTCCTTGTCAACACTGG 58.402 55.000 0.00 0.00 0.00 4.00
911 1092 3.119919 GGTACGAGTGTGAACTCCTACAG 60.120 52.174 13.39 0.00 33.15 2.74
912 1093 2.816087 GGTACGAGTGTGAACTCCTACA 59.184 50.000 13.39 0.00 33.15 2.74
913 1094 2.816087 TGGTACGAGTGTGAACTCCTAC 59.184 50.000 0.00 4.01 33.38 3.18
914 1095 2.816087 GTGGTACGAGTGTGAACTCCTA 59.184 50.000 0.00 0.00 33.38 2.94
915 1096 1.612463 GTGGTACGAGTGTGAACTCCT 59.388 52.381 0.00 0.00 33.38 3.69
916 1097 1.336609 GGTGGTACGAGTGTGAACTCC 60.337 57.143 0.00 0.00 33.38 3.85
917 1098 1.338973 TGGTGGTACGAGTGTGAACTC 59.661 52.381 0.00 0.00 0.00 3.01
918 1099 1.068127 GTGGTGGTACGAGTGTGAACT 59.932 52.381 0.00 0.00 0.00 3.01
927 1108 2.990967 GACGGGGTGGTGGTACGA 60.991 66.667 0.00 0.00 0.00 3.43
954 1138 2.105993 CGGGGTTTTATAGGGGAAGGAG 59.894 54.545 0.00 0.00 0.00 3.69
988 1204 2.483876 CACGGAGTTGTGACTTGTGAT 58.516 47.619 6.92 0.00 41.61 3.06
1003 1219 2.649034 GAGTGGAACGAGCACGGA 59.351 61.111 8.74 0.00 45.86 4.69
1014 1234 0.325671 GGTGATCTGAGGGGAGTGGA 60.326 60.000 0.00 0.00 0.00 4.02
1078 1322 4.767255 GGTCAGCGACAGGGGCAG 62.767 72.222 10.14 0.00 33.68 4.85
1087 1331 1.215382 CCATGAAGACGGTCAGCGA 59.785 57.895 11.27 0.00 0.00 4.93
1090 1334 1.811266 CCGCCATGAAGACGGTCAG 60.811 63.158 11.27 0.00 42.01 3.51
1240 1484 1.617804 CCAGTTGATGCAGGGGTTCAT 60.618 52.381 0.00 0.00 0.00 2.57
1253 1497 1.444250 GTGACGTGGGACCAGTTGA 59.556 57.895 0.00 0.00 0.00 3.18
1317 1564 1.749258 GGGGAACAAGGATCGGTGC 60.749 63.158 0.00 0.00 0.00 5.01
1329 1579 1.134068 GGAAGCAGTATGGAGGGGAAC 60.134 57.143 0.00 0.00 35.86 3.62
1335 1585 1.941325 GGAACGGAAGCAGTATGGAG 58.059 55.000 0.00 0.00 35.86 3.86
1358 1608 6.873076 TGAAATTTTGAAAATCGGATGAAGGG 59.127 34.615 3.32 0.00 0.00 3.95
1359 1609 7.887996 TGAAATTTTGAAAATCGGATGAAGG 57.112 32.000 3.32 0.00 0.00 3.46
1377 1652 7.647715 CAGAACAAGAAACACCGTATTGAAATT 59.352 33.333 0.00 0.00 0.00 1.82
1378 1653 7.138736 CAGAACAAGAAACACCGTATTGAAAT 58.861 34.615 0.00 0.00 0.00 2.17
1379 1654 6.094325 ACAGAACAAGAAACACCGTATTGAAA 59.906 34.615 0.00 0.00 0.00 2.69
1380 1655 5.587043 ACAGAACAAGAAACACCGTATTGAA 59.413 36.000 0.00 0.00 0.00 2.69
1381 1656 5.120399 ACAGAACAAGAAACACCGTATTGA 58.880 37.500 0.00 0.00 0.00 2.57
1382 1657 5.007234 TGACAGAACAAGAAACACCGTATTG 59.993 40.000 0.00 0.00 0.00 1.90
1383 1658 5.120399 TGACAGAACAAGAAACACCGTATT 58.880 37.500 0.00 0.00 0.00 1.89
1384 1659 4.699637 TGACAGAACAAGAAACACCGTAT 58.300 39.130 0.00 0.00 0.00 3.06
1387 1663 3.194861 TCTGACAGAACAAGAAACACCG 58.805 45.455 1.64 0.00 0.00 4.94
1390 1666 6.420903 CGATTACTCTGACAGAACAAGAAACA 59.579 38.462 6.61 0.00 0.00 2.83
1391 1667 6.128795 CCGATTACTCTGACAGAACAAGAAAC 60.129 42.308 6.61 0.00 0.00 2.78
1394 1670 4.082190 CCCGATTACTCTGACAGAACAAGA 60.082 45.833 6.61 0.00 0.00 3.02
1395 1671 4.177026 CCCGATTACTCTGACAGAACAAG 58.823 47.826 6.61 0.00 0.00 3.16
1417 1693 0.942252 GTCCGGACAGGTTCACAAAC 59.058 55.000 29.75 0.00 41.99 2.93
1535 1829 6.657966 ACATGCCATATACTTTGATCCATCAG 59.342 38.462 0.00 0.00 38.19 2.90
1762 2103 3.119459 TGAGAAGAATCACTGTACGAGCC 60.119 47.826 0.00 0.00 0.00 4.70
1776 2117 7.094634 GCCAGACTTGTTTTATCATGAGAAGAA 60.095 37.037 2.58 1.60 0.00 2.52
1778 2119 6.373774 AGCCAGACTTGTTTTATCATGAGAAG 59.626 38.462 2.58 0.00 0.00 2.85
1813 2220 6.183360 CCTGTCAAATCATCATGCAAATGTTG 60.183 38.462 11.05 9.58 0.00 3.33
1971 2389 4.449131 TGCAGATGAAGATCACTGGATTC 58.551 43.478 0.00 0.00 32.67 2.52
1991 2409 1.868469 TCCTGCAAGCAAAACAATGC 58.132 45.000 0.00 0.00 46.78 3.56
2069 2500 2.174319 GTCGGCGAGGCTGGAATTC 61.174 63.158 11.20 0.00 35.34 2.17
2206 2653 5.860941 AGTAGCTAGTACATGCATGAACT 57.139 39.130 32.75 19.48 33.55 3.01
2220 2667 4.338682 ACGAATCCACACCTAAGTAGCTAG 59.661 45.833 0.00 0.00 0.00 3.42
2223 2670 3.119245 TCACGAATCCACACCTAAGTAGC 60.119 47.826 0.00 0.00 0.00 3.58
2224 2671 4.673441 CTCACGAATCCACACCTAAGTAG 58.327 47.826 0.00 0.00 0.00 2.57
2225 2672 3.119245 GCTCACGAATCCACACCTAAGTA 60.119 47.826 0.00 0.00 0.00 2.24
2226 2673 2.353803 GCTCACGAATCCACACCTAAGT 60.354 50.000 0.00 0.00 0.00 2.24
2227 2674 2.271800 GCTCACGAATCCACACCTAAG 58.728 52.381 0.00 0.00 0.00 2.18
2228 2675 1.403647 CGCTCACGAATCCACACCTAA 60.404 52.381 0.00 0.00 43.93 2.69
2229 2676 0.172578 CGCTCACGAATCCACACCTA 59.827 55.000 0.00 0.00 43.93 3.08
2230 2677 1.079819 CGCTCACGAATCCACACCT 60.080 57.895 0.00 0.00 43.93 4.00
2231 2678 3.474806 CGCTCACGAATCCACACC 58.525 61.111 0.00 0.00 43.93 4.16
2271 2743 3.054503 CTGCTCTGGCACTGGCAC 61.055 66.667 0.07 0.00 44.28 5.01
2272 2744 4.340246 CCTGCTCTGGCACTGGCA 62.340 66.667 5.02 5.02 44.28 4.92
2280 2752 0.106819 AATTAGCCTGCCTGCTCTGG 60.107 55.000 0.00 0.00 41.68 3.86
2281 2753 1.760192 AAATTAGCCTGCCTGCTCTG 58.240 50.000 0.00 0.00 41.68 3.35
2282 2754 3.117738 ACATAAATTAGCCTGCCTGCTCT 60.118 43.478 0.00 0.00 41.68 4.09
2329 2815 3.977244 GGCAACAGCCCACAACGG 61.977 66.667 0.00 0.00 42.80 4.44
2429 2926 9.725206 ATTCCATTAGGTACCGGAAGTATATAT 57.275 33.333 19.74 3.73 40.71 0.86
2430 2927 9.193806 GATTCCATTAGGTACCGGAAGTATATA 57.806 37.037 19.74 1.12 40.71 0.86
2431 2928 7.676893 TGATTCCATTAGGTACCGGAAGTATAT 59.323 37.037 19.74 6.98 40.71 0.86
2432 2929 7.011994 TGATTCCATTAGGTACCGGAAGTATA 58.988 38.462 19.74 7.43 40.71 1.47
2433 2930 5.842328 TGATTCCATTAGGTACCGGAAGTAT 59.158 40.000 19.74 7.57 40.71 2.12
2434 2931 5.069516 GTGATTCCATTAGGTACCGGAAGTA 59.930 44.000 19.74 11.14 40.71 2.24
2441 2938 3.470645 AGCGTGATTCCATTAGGTACC 57.529 47.619 2.73 2.73 35.89 3.34
2457 2954 0.319555 TCGAGCAGCAACTTAAGCGT 60.320 50.000 1.29 0.00 37.01 5.07
2460 2957 2.530177 TCGATCGAGCAGCAACTTAAG 58.470 47.619 15.15 0.00 0.00 1.85
2475 2972 5.470845 ACTCGGTGAAAATTGATTCGATC 57.529 39.130 0.00 0.00 31.80 3.69
2476 2973 5.631026 CAACTCGGTGAAAATTGATTCGAT 58.369 37.500 0.00 0.00 31.80 3.59
2477 2974 4.612712 GCAACTCGGTGAAAATTGATTCGA 60.613 41.667 0.00 0.00 31.80 3.71
2478 2975 3.603770 GCAACTCGGTGAAAATTGATTCG 59.396 43.478 0.00 0.00 31.80 3.34
2479 2976 4.798574 AGCAACTCGGTGAAAATTGATTC 58.201 39.130 0.00 0.00 0.00 2.52
2480 2977 4.853924 AGCAACTCGGTGAAAATTGATT 57.146 36.364 0.00 0.00 0.00 2.57
2484 2981 3.123050 GCAAAGCAACTCGGTGAAAATT 58.877 40.909 0.00 0.00 0.00 1.82
2487 2987 1.388547 AGCAAAGCAACTCGGTGAAA 58.611 45.000 0.00 0.00 0.00 2.69
2493 2993 0.385390 ACCCAAAGCAAAGCAACTCG 59.615 50.000 0.00 0.00 0.00 4.18
2501 3001 1.484038 ACTCAAGCACCCAAAGCAAA 58.516 45.000 0.00 0.00 0.00 3.68
2525 3025 2.294479 ACAGAAAACGAACGAATGCG 57.706 45.000 0.14 0.00 44.79 4.73
2555 3055 1.532604 CCTGTGAGCGGTACTGGACA 61.533 60.000 3.34 0.00 38.88 4.02
2558 3058 1.215647 GACCTGTGAGCGGTACTGG 59.784 63.158 3.34 14.11 41.36 4.00
2586 3106 8.836413 TGTTCTGAAGTACTCCTAAAAACATTG 58.164 33.333 0.00 0.00 0.00 2.82
2591 3111 9.675464 TTTTCTGTTCTGAAGTACTCCTAAAAA 57.325 29.630 0.00 0.00 0.00 1.94
2693 3213 2.158254 CACACCGTTGAGTCATGTGATG 59.842 50.000 16.30 10.44 42.63 3.07
2696 3216 0.867746 CCACACCGTTGAGTCATGTG 59.132 55.000 14.90 14.90 40.28 3.21
2740 3260 0.328258 AGGTAGTGCCCGCTCAAAAT 59.672 50.000 0.00 0.00 38.26 1.82
2764 3294 0.176680 CGCAGATCAGTGCCCTAAGT 59.823 55.000 0.00 0.00 40.62 2.24
2765 3295 1.156645 GCGCAGATCAGTGCCCTAAG 61.157 60.000 12.26 0.00 40.62 2.18
2766 3296 1.153369 GCGCAGATCAGTGCCCTAA 60.153 57.895 12.26 0.00 40.62 2.69
2767 3297 2.501128 GCGCAGATCAGTGCCCTA 59.499 61.111 12.26 0.00 40.62 3.53
2772 3302 2.887568 GACCGGCGCAGATCAGTG 60.888 66.667 10.83 0.00 0.00 3.66
2773 3303 4.498520 CGACCGGCGCAGATCAGT 62.499 66.667 10.83 0.00 0.00 3.41
2774 3304 4.193334 TCGACCGGCGCAGATCAG 62.193 66.667 10.83 0.00 40.61 2.90
2775 3305 4.492160 GTCGACCGGCGCAGATCA 62.492 66.667 10.83 0.00 40.61 2.92
2803 3333 3.792053 CTGGTATGACCGGCGGAGC 62.792 68.421 35.78 23.67 46.05 4.70
2804 3334 2.417516 CTGGTATGACCGGCGGAG 59.582 66.667 35.78 14.07 42.58 4.63
2805 3335 3.151710 CCTGGTATGACCGGCGGA 61.152 66.667 35.78 12.34 43.40 5.54
2806 3336 3.151710 TCCTGGTATGACCGGCGG 61.152 66.667 27.06 27.06 43.40 6.13
2807 3337 2.106332 GTCCTGGTATGACCGGCG 59.894 66.667 0.00 0.00 43.40 6.46
2808 3338 2.504519 GGTCCTGGTATGACCGGC 59.495 66.667 0.00 0.00 43.40 6.13
2812 3342 1.144057 CCTGCGGTCCTGGTATGAC 59.856 63.158 0.00 0.00 0.00 3.06
2813 3343 0.398522 ATCCTGCGGTCCTGGTATGA 60.399 55.000 0.00 0.00 34.39 2.15
2814 3344 0.250038 CATCCTGCGGTCCTGGTATG 60.250 60.000 0.00 0.00 34.39 2.39
2815 3345 0.398522 TCATCCTGCGGTCCTGGTAT 60.399 55.000 0.00 0.00 34.39 2.73
2816 3346 1.001120 TCATCCTGCGGTCCTGGTA 59.999 57.895 0.00 0.00 34.39 3.25
2817 3347 2.284625 TCATCCTGCGGTCCTGGT 60.285 61.111 0.00 0.00 34.39 4.00
2818 3348 2.187946 GTCATCCTGCGGTCCTGG 59.812 66.667 0.00 0.00 0.00 4.45
2819 3349 1.142748 GAGTCATCCTGCGGTCCTG 59.857 63.158 0.00 0.00 0.00 3.86
2820 3350 2.060980 GGAGTCATCCTGCGGTCCT 61.061 63.158 0.00 0.00 42.94 3.85
2821 3351 1.690219 ATGGAGTCATCCTGCGGTCC 61.690 60.000 0.00 0.00 46.80 4.46
2822 3352 0.179000 AATGGAGTCATCCTGCGGTC 59.821 55.000 0.00 0.00 46.80 4.79
2823 3353 0.620556 AAATGGAGTCATCCTGCGGT 59.379 50.000 0.00 0.00 46.80 5.68
2824 3354 1.019673 CAAATGGAGTCATCCTGCGG 58.980 55.000 0.00 0.00 46.80 5.69
2825 3355 1.399440 CACAAATGGAGTCATCCTGCG 59.601 52.381 0.00 0.00 46.80 5.18
2836 3366 8.595196 GATTCTAATCTAACGGCCACAAATGGA 61.595 40.741 2.24 0.00 39.16 3.41
2837 3367 6.513393 GATTCTAATCTAACGGCCACAAATGG 60.513 42.308 2.24 0.00 39.50 3.16
2838 3368 5.811399 TTCTAATCTAACGGCCACAAATG 57.189 39.130 2.24 0.00 0.00 2.32
2839 3369 5.531287 GGATTCTAATCTAACGGCCACAAAT 59.469 40.000 2.24 0.00 35.73 2.32
2840 3370 4.879545 GGATTCTAATCTAACGGCCACAAA 59.120 41.667 2.24 0.00 35.73 2.83
2841 3371 4.448210 GGATTCTAATCTAACGGCCACAA 58.552 43.478 2.24 0.00 35.73 3.33
2842 3372 3.181458 GGGATTCTAATCTAACGGCCACA 60.181 47.826 2.24 0.00 35.73 4.17
2843 3373 3.181458 TGGGATTCTAATCTAACGGCCAC 60.181 47.826 2.24 0.00 35.73 5.01
2844 3374 3.042682 TGGGATTCTAATCTAACGGCCA 58.957 45.455 2.24 0.00 35.73 5.36
2845 3375 3.400255 GTGGGATTCTAATCTAACGGCC 58.600 50.000 0.00 0.00 35.73 6.13
2846 3376 3.057734 CGTGGGATTCTAATCTAACGGC 58.942 50.000 16.21 0.00 38.89 5.68
2847 3377 4.202080 TGACGTGGGATTCTAATCTAACGG 60.202 45.833 22.47 12.33 42.69 4.44
2848 3378 4.928601 TGACGTGGGATTCTAATCTAACG 58.071 43.478 19.59 19.59 43.32 3.18
2849 3379 6.750148 AGATGACGTGGGATTCTAATCTAAC 58.250 40.000 0.00 1.73 35.73 2.34
2850 3380 6.978674 AGATGACGTGGGATTCTAATCTAA 57.021 37.500 0.00 0.00 35.73 2.10
2851 3381 6.978674 AAGATGACGTGGGATTCTAATCTA 57.021 37.500 0.00 0.00 35.73 1.98
2852 3382 5.878406 AAGATGACGTGGGATTCTAATCT 57.122 39.130 0.00 0.00 35.73 2.40
2853 3383 6.017852 GGAAAAGATGACGTGGGATTCTAATC 60.018 42.308 0.00 0.00 34.66 1.75
2854 3384 5.823045 GGAAAAGATGACGTGGGATTCTAAT 59.177 40.000 0.00 0.00 0.00 1.73
2855 3385 5.183228 GGAAAAGATGACGTGGGATTCTAA 58.817 41.667 0.00 0.00 0.00 2.10
2856 3386 4.383770 GGGAAAAGATGACGTGGGATTCTA 60.384 45.833 0.00 0.00 0.00 2.10
2857 3387 3.610911 GGAAAAGATGACGTGGGATTCT 58.389 45.455 0.00 0.00 0.00 2.40
2858 3388 2.683362 GGGAAAAGATGACGTGGGATTC 59.317 50.000 0.00 0.00 0.00 2.52
2859 3389 2.308866 AGGGAAAAGATGACGTGGGATT 59.691 45.455 0.00 0.00 0.00 3.01
2860 3390 1.916181 AGGGAAAAGATGACGTGGGAT 59.084 47.619 0.00 0.00 0.00 3.85
2861 3391 1.358152 AGGGAAAAGATGACGTGGGA 58.642 50.000 0.00 0.00 0.00 4.37
2862 3392 2.084546 GAAGGGAAAAGATGACGTGGG 58.915 52.381 0.00 0.00 0.00 4.61
2863 3393 2.084546 GGAAGGGAAAAGATGACGTGG 58.915 52.381 0.00 0.00 0.00 4.94
2864 3394 2.084546 GGGAAGGGAAAAGATGACGTG 58.915 52.381 0.00 0.00 0.00 4.49
2865 3395 1.004394 GGGGAAGGGAAAAGATGACGT 59.996 52.381 0.00 0.00 0.00 4.34
2866 3396 1.004277 TGGGGAAGGGAAAAGATGACG 59.996 52.381 0.00 0.00 0.00 4.35
2867 3397 2.447443 GTGGGGAAGGGAAAAGATGAC 58.553 52.381 0.00 0.00 0.00 3.06
2868 3398 1.357761 GGTGGGGAAGGGAAAAGATGA 59.642 52.381 0.00 0.00 0.00 2.92
2869 3399 1.852633 GGTGGGGAAGGGAAAAGATG 58.147 55.000 0.00 0.00 0.00 2.90
2870 3400 0.331616 CGGTGGGGAAGGGAAAAGAT 59.668 55.000 0.00 0.00 0.00 2.40
2871 3401 1.765074 CGGTGGGGAAGGGAAAAGA 59.235 57.895 0.00 0.00 0.00 2.52
2872 3402 1.977009 GCGGTGGGGAAGGGAAAAG 60.977 63.158 0.00 0.00 0.00 2.27
2873 3403 2.116556 GCGGTGGGGAAGGGAAAA 59.883 61.111 0.00 0.00 0.00 2.29
2874 3404 3.974293 GGCGGTGGGGAAGGGAAA 61.974 66.667 0.00 0.00 0.00 3.13
2875 3405 4.995058 AGGCGGTGGGGAAGGGAA 62.995 66.667 0.00 0.00 0.00 3.97
2879 3409 4.452733 GACGAGGCGGTGGGGAAG 62.453 72.222 0.00 0.00 0.00 3.46
2883 3413 4.135153 CTGAGACGAGGCGGTGGG 62.135 72.222 0.00 0.00 0.00 4.61
2884 3414 2.343163 GATCTGAGACGAGGCGGTGG 62.343 65.000 0.00 0.00 0.00 4.61
2885 3415 1.064946 GATCTGAGACGAGGCGGTG 59.935 63.158 0.00 0.00 0.00 4.94
2886 3416 1.378646 TGATCTGAGACGAGGCGGT 60.379 57.895 0.00 0.00 0.00 5.68
2887 3417 1.098129 TCTGATCTGAGACGAGGCGG 61.098 60.000 0.00 0.00 0.00 6.13
2888 3418 0.950836 ATCTGATCTGAGACGAGGCG 59.049 55.000 8.37 0.00 0.00 5.52
2889 3419 1.069296 CGATCTGATCTGAGACGAGGC 60.069 57.143 19.30 0.00 0.00 4.70
2890 3420 2.480037 CTCGATCTGATCTGAGACGAGG 59.520 54.545 30.62 21.20 38.53 4.63
2891 3421 3.389221 TCTCGATCTGATCTGAGACGAG 58.611 50.000 31.44 31.44 40.77 4.18
2892 3422 3.460857 TCTCGATCTGATCTGAGACGA 57.539 47.619 24.73 22.54 35.56 4.20
2893 3423 5.167845 TCTATCTCGATCTGATCTGAGACG 58.832 45.833 27.93 23.46 39.68 4.18
2894 3424 6.037500 CCATCTATCTCGATCTGATCTGAGAC 59.962 46.154 27.93 4.43 39.68 3.36
2895 3425 6.114767 CCATCTATCTCGATCTGATCTGAGA 58.885 44.000 27.72 27.72 40.45 3.27
2896 3426 5.297527 CCCATCTATCTCGATCTGATCTGAG 59.702 48.000 22.28 22.28 33.94 3.35
2897 3427 5.045286 TCCCATCTATCTCGATCTGATCTGA 60.045 44.000 15.16 12.78 0.00 3.27
2898 3428 5.192176 TCCCATCTATCTCGATCTGATCTG 58.808 45.833 15.16 9.09 0.00 2.90
2899 3429 5.449297 TCCCATCTATCTCGATCTGATCT 57.551 43.478 15.16 0.00 0.00 2.75
2900 3430 5.417266 TGTTCCCATCTATCTCGATCTGATC 59.583 44.000 7.60 7.60 0.00 2.92
2901 3431 5.328565 TGTTCCCATCTATCTCGATCTGAT 58.671 41.667 0.00 0.00 0.00 2.90
2902 3432 4.729868 TGTTCCCATCTATCTCGATCTGA 58.270 43.478 0.00 0.00 0.00 3.27
2903 3433 5.226396 GTTGTTCCCATCTATCTCGATCTG 58.774 45.833 0.00 0.00 0.00 2.90
2904 3434 4.022762 CGTTGTTCCCATCTATCTCGATCT 60.023 45.833 0.00 0.00 0.00 2.75
2905 3435 4.230657 CGTTGTTCCCATCTATCTCGATC 58.769 47.826 0.00 0.00 0.00 3.69
2906 3436 3.637229 ACGTTGTTCCCATCTATCTCGAT 59.363 43.478 0.00 0.00 0.00 3.59
2907 3437 3.021695 ACGTTGTTCCCATCTATCTCGA 58.978 45.455 0.00 0.00 0.00 4.04
2908 3438 3.438297 ACGTTGTTCCCATCTATCTCG 57.562 47.619 0.00 0.00 0.00 4.04
2909 3439 4.567159 GTCAACGTTGTTCCCATCTATCTC 59.433 45.833 26.47 0.00 0.00 2.75
2910 3440 4.504858 GTCAACGTTGTTCCCATCTATCT 58.495 43.478 26.47 0.00 0.00 1.98
2911 3441 3.621715 GGTCAACGTTGTTCCCATCTATC 59.378 47.826 26.47 1.80 0.00 2.08
2912 3442 3.263425 AGGTCAACGTTGTTCCCATCTAT 59.737 43.478 26.47 11.09 0.00 1.98
2913 3443 2.635915 AGGTCAACGTTGTTCCCATCTA 59.364 45.455 26.47 2.24 0.00 1.98
2914 3444 1.420138 AGGTCAACGTTGTTCCCATCT 59.580 47.619 26.47 10.78 0.00 2.90
2915 3445 1.892209 AGGTCAACGTTGTTCCCATC 58.108 50.000 26.47 8.55 0.00 3.51
2916 3446 2.158667 AGAAGGTCAACGTTGTTCCCAT 60.159 45.455 26.47 19.52 0.00 4.00
2917 3447 1.210967 AGAAGGTCAACGTTGTTCCCA 59.789 47.619 26.47 5.32 0.00 4.37
2918 3448 1.602377 CAGAAGGTCAACGTTGTTCCC 59.398 52.381 26.47 22.52 0.00 3.97
2919 3449 2.285977 ACAGAAGGTCAACGTTGTTCC 58.714 47.619 26.47 26.00 0.00 3.62
2920 3450 4.208666 GTCTACAGAAGGTCAACGTTGTTC 59.791 45.833 26.47 21.56 0.00 3.18
2921 3451 4.117685 GTCTACAGAAGGTCAACGTTGTT 58.882 43.478 26.47 14.66 0.00 2.83
2922 3452 3.131577 TGTCTACAGAAGGTCAACGTTGT 59.868 43.478 26.47 8.55 0.00 3.32
2923 3453 3.713288 TGTCTACAGAAGGTCAACGTTG 58.287 45.455 22.35 22.35 0.00 4.10
2924 3454 4.395959 TTGTCTACAGAAGGTCAACGTT 57.604 40.909 0.00 0.00 0.00 3.99
2925 3455 4.117685 GTTTGTCTACAGAAGGTCAACGT 58.882 43.478 0.00 0.00 0.00 3.99
2926 3456 4.209288 CAGTTTGTCTACAGAAGGTCAACG 59.791 45.833 0.00 0.00 0.00 4.10
2927 3457 4.024809 GCAGTTTGTCTACAGAAGGTCAAC 60.025 45.833 0.00 0.00 0.00 3.18
2928 3458 4.127171 GCAGTTTGTCTACAGAAGGTCAA 58.873 43.478 0.00 0.00 0.00 3.18
2929 3459 3.494398 GGCAGTTTGTCTACAGAAGGTCA 60.494 47.826 0.00 0.00 0.00 4.02
2930 3460 3.067833 GGCAGTTTGTCTACAGAAGGTC 58.932 50.000 0.00 0.00 0.00 3.85
2931 3461 2.224548 GGGCAGTTTGTCTACAGAAGGT 60.225 50.000 0.00 0.00 0.00 3.50
2932 3462 2.427506 GGGCAGTTTGTCTACAGAAGG 58.572 52.381 0.00 0.00 0.00 3.46
2933 3463 2.039084 AGGGGCAGTTTGTCTACAGAAG 59.961 50.000 0.00 0.00 0.00 2.85
2934 3464 2.038557 GAGGGGCAGTTTGTCTACAGAA 59.961 50.000 0.00 0.00 0.00 3.02
2935 3465 1.623811 GAGGGGCAGTTTGTCTACAGA 59.376 52.381 0.00 0.00 0.00 3.41
2936 3466 1.673033 CGAGGGGCAGTTTGTCTACAG 60.673 57.143 0.00 0.00 0.00 2.74
2937 3467 0.320374 CGAGGGGCAGTTTGTCTACA 59.680 55.000 0.00 0.00 0.00 2.74
2938 3468 1.019805 GCGAGGGGCAGTTTGTCTAC 61.020 60.000 0.00 0.00 42.87 2.59
2939 3469 1.295423 GCGAGGGGCAGTTTGTCTA 59.705 57.895 0.00 0.00 42.87 2.59
2940 3470 2.032681 GCGAGGGGCAGTTTGTCT 59.967 61.111 0.00 0.00 42.87 3.41
2950 3480 4.785453 GAGGCAACCTGCGAGGGG 62.785 72.222 7.06 0.00 46.21 4.79
2952 3482 4.379243 ACGAGGCAACCTGCGAGG 62.379 66.667 10.88 1.16 46.21 4.63
2953 3483 2.811317 GACGAGGCAACCTGCGAG 60.811 66.667 10.88 0.00 46.21 5.03
2954 3484 4.717629 CGACGAGGCAACCTGCGA 62.718 66.667 10.88 0.00 46.21 5.10
2969 3499 4.634703 ATGGTGTGTTGCCGCCGA 62.635 61.111 0.00 0.00 37.84 5.54
2970 3500 4.101790 GATGGTGTGTTGCCGCCG 62.102 66.667 0.00 0.00 37.84 6.46
2971 3501 2.672996 AGATGGTGTGTTGCCGCC 60.673 61.111 0.00 0.00 35.49 6.13
2972 3502 2.870372 GAGATGGTGTGTTGCCGC 59.130 61.111 0.00 0.00 0.00 6.53
2973 3503 3.027170 GCGAGATGGTGTGTTGCCG 62.027 63.158 0.00 0.00 0.00 5.69
2974 3504 2.690778 GGCGAGATGGTGTGTTGCC 61.691 63.158 0.00 0.00 42.86 4.52
2975 3505 1.308069 ATGGCGAGATGGTGTGTTGC 61.308 55.000 0.00 0.00 0.00 4.17
2976 3506 0.448990 CATGGCGAGATGGTGTGTTG 59.551 55.000 0.00 0.00 0.00 3.33
2977 3507 0.677731 CCATGGCGAGATGGTGTGTT 60.678 55.000 0.00 0.00 38.53 3.32
2978 3508 1.078214 CCATGGCGAGATGGTGTGT 60.078 57.895 0.00 0.00 38.53 3.72
2979 3509 2.475466 GCCATGGCGAGATGGTGTG 61.475 63.158 23.48 0.00 44.37 3.82
2980 3510 2.124570 GCCATGGCGAGATGGTGT 60.125 61.111 23.48 0.00 44.37 4.16
2981 3511 2.903855 GGCCATGGCGAGATGGTG 60.904 66.667 29.90 0.00 44.37 4.17
2992 3522 3.630148 GATGCGTCGACGGCCATG 61.630 66.667 36.13 10.72 40.23 3.66
2993 3523 4.141965 TGATGCGTCGACGGCCAT 62.142 61.111 36.13 29.93 40.23 4.40
3005 3535 4.481112 CAAAGGCGCCGGTGATGC 62.481 66.667 23.20 10.46 0.00 3.91
3006 3536 4.481112 GCAAAGGCGCCGGTGATG 62.481 66.667 29.59 21.28 0.00 3.07
3026 3556 4.657824 ACGTGGTGAAGGCGACGG 62.658 66.667 0.00 0.00 43.19 4.79
3027 3557 3.103911 GACGTGGTGAAGGCGACG 61.104 66.667 0.00 0.00 44.18 5.12
3028 3558 2.737376 GGACGTGGTGAAGGCGAC 60.737 66.667 0.00 0.00 0.00 5.19
3029 3559 3.228017 TGGACGTGGTGAAGGCGA 61.228 61.111 0.00 0.00 0.00 5.54
3030 3560 3.041940 GTGGACGTGGTGAAGGCG 61.042 66.667 0.00 0.00 0.00 5.52
3031 3561 2.668550 GGTGGACGTGGTGAAGGC 60.669 66.667 0.00 0.00 0.00 4.35
3032 3562 2.032071 GGGTGGACGTGGTGAAGG 59.968 66.667 0.00 0.00 0.00 3.46
3033 3563 1.004918 GAGGGTGGACGTGGTGAAG 60.005 63.158 0.00 0.00 0.00 3.02
3034 3564 1.458777 AGAGGGTGGACGTGGTGAA 60.459 57.895 0.00 0.00 0.00 3.18
3035 3565 1.906824 GAGAGGGTGGACGTGGTGA 60.907 63.158 0.00 0.00 0.00 4.02
3036 3566 2.657237 GAGAGGGTGGACGTGGTG 59.343 66.667 0.00 0.00 0.00 4.17
3037 3567 2.989824 CGAGAGGGTGGACGTGGT 60.990 66.667 0.00 0.00 0.00 4.16
3038 3568 4.436998 GCGAGAGGGTGGACGTGG 62.437 72.222 0.00 0.00 0.00 4.94
3039 3569 4.436998 GGCGAGAGGGTGGACGTG 62.437 72.222 0.00 0.00 0.00 4.49
3040 3570 4.988716 TGGCGAGAGGGTGGACGT 62.989 66.667 0.00 0.00 0.00 4.34
3041 3571 3.432051 GATGGCGAGAGGGTGGACG 62.432 68.421 0.00 0.00 0.00 4.79
3042 3572 2.501610 GATGGCGAGAGGGTGGAC 59.498 66.667 0.00 0.00 0.00 4.02
3043 3573 2.764128 GGATGGCGAGAGGGTGGA 60.764 66.667 0.00 0.00 0.00 4.02
3044 3574 4.227134 CGGATGGCGAGAGGGTGG 62.227 72.222 0.00 0.00 0.00 4.61
3045 3575 2.907897 GAACGGATGGCGAGAGGGTG 62.908 65.000 0.00 0.00 0.00 4.61
3046 3576 2.683933 AACGGATGGCGAGAGGGT 60.684 61.111 0.00 0.00 0.00 4.34
3047 3577 2.107141 GAACGGATGGCGAGAGGG 59.893 66.667 0.00 0.00 0.00 4.30
3048 3578 2.278857 CGAACGGATGGCGAGAGG 60.279 66.667 0.00 0.00 0.00 3.69
3049 3579 1.874019 CACGAACGGATGGCGAGAG 60.874 63.158 0.00 0.00 0.00 3.20
3050 3580 1.663379 ATCACGAACGGATGGCGAGA 61.663 55.000 0.00 0.00 0.00 4.04
3051 3581 1.209275 GATCACGAACGGATGGCGAG 61.209 60.000 0.00 0.00 0.00 5.03
3052 3582 1.226859 GATCACGAACGGATGGCGA 60.227 57.895 0.00 0.00 0.00 5.54
3053 3583 0.030235 TAGATCACGAACGGATGGCG 59.970 55.000 0.00 0.00 0.00 5.69
3054 3584 1.488527 GTAGATCACGAACGGATGGC 58.511 55.000 0.00 0.00 0.00 4.40
3065 3595 2.029244 CGTGGTTTGATGCGTAGATCAC 59.971 50.000 0.00 0.00 31.92 3.06
3066 3596 2.267426 CGTGGTTTGATGCGTAGATCA 58.733 47.619 0.00 0.00 0.00 2.92
3067 3597 1.004927 GCGTGGTTTGATGCGTAGATC 60.005 52.381 0.00 0.00 0.00 2.75
3068 3598 1.006832 GCGTGGTTTGATGCGTAGAT 58.993 50.000 0.00 0.00 0.00 1.98
3069 3599 1.017177 GGCGTGGTTTGATGCGTAGA 61.017 55.000 0.00 0.00 0.00 2.59
3070 3600 1.423845 GGCGTGGTTTGATGCGTAG 59.576 57.895 0.00 0.00 0.00 3.51
3071 3601 2.384309 CGGCGTGGTTTGATGCGTA 61.384 57.895 0.00 0.00 0.00 4.42
3072 3602 3.722295 CGGCGTGGTTTGATGCGT 61.722 61.111 0.00 0.00 0.00 5.24
3073 3603 3.248630 AACGGCGTGGTTTGATGCG 62.249 57.895 15.70 0.00 0.00 4.73
3074 3604 1.729131 CAACGGCGTGGTTTGATGC 60.729 57.895 15.70 0.00 0.00 3.91
3075 3605 0.660005 CACAACGGCGTGGTTTGATG 60.660 55.000 19.14 10.84 33.05 3.07
3076 3606 1.652012 CACAACGGCGTGGTTTGAT 59.348 52.632 19.14 0.00 33.05 2.57
3077 3607 3.102985 CACAACGGCGTGGTTTGA 58.897 55.556 19.14 0.00 33.05 2.69
3107 3637 2.162608 TGTACAATATGTTGCAACCGGC 59.837 45.455 26.14 2.21 45.13 6.13
3108 3638 3.438781 AGTGTACAATATGTTGCAACCGG 59.561 43.478 26.14 13.11 38.96 5.28
3109 3639 4.647964 GAGTGTACAATATGTTGCAACCG 58.352 43.478 26.14 11.91 38.96 4.44
3110 3640 4.647964 CGAGTGTACAATATGTTGCAACC 58.352 43.478 26.14 9.01 38.96 3.77
3111 3641 4.088648 GCGAGTGTACAATATGTTGCAAC 58.911 43.478 22.83 22.83 38.96 4.17
3112 3642 3.126171 GGCGAGTGTACAATATGTTGCAA 59.874 43.478 0.00 0.00 38.96 4.08
3113 3643 2.675844 GGCGAGTGTACAATATGTTGCA 59.324 45.455 0.00 0.00 38.96 4.08
3114 3644 2.285602 CGGCGAGTGTACAATATGTTGC 60.286 50.000 0.00 0.00 38.96 4.17
3115 3645 2.927477 ACGGCGAGTGTACAATATGTTG 59.073 45.455 16.62 0.00 41.20 3.33
3116 3646 3.184541 GACGGCGAGTGTACAATATGTT 58.815 45.455 16.62 0.00 0.00 2.71
3117 3647 2.793585 CGACGGCGAGTGTACAATATGT 60.794 50.000 16.62 0.00 40.82 2.29
3118 3648 1.779157 CGACGGCGAGTGTACAATATG 59.221 52.381 16.62 0.00 40.82 1.78
3119 3649 1.862815 GCGACGGCGAGTGTACAATAT 60.863 52.381 18.90 0.00 40.82 1.28
3120 3650 0.523968 GCGACGGCGAGTGTACAATA 60.524 55.000 18.90 0.00 40.82 1.90
3121 3651 1.804326 GCGACGGCGAGTGTACAAT 60.804 57.895 18.90 0.00 40.82 2.71
3122 3652 2.429571 GCGACGGCGAGTGTACAA 60.430 61.111 18.90 0.00 40.82 2.41
3123 3653 3.604494 CTGCGACGGCGAGTGTACA 62.604 63.158 18.90 0.00 44.10 2.90
3124 3654 2.874780 CTGCGACGGCGAGTGTAC 60.875 66.667 18.90 0.00 44.10 2.90
3125 3655 4.771356 GCTGCGACGGCGAGTGTA 62.771 66.667 18.90 0.69 44.10 2.90
3134 3664 4.803426 GACAGGAGGGCTGCGACG 62.803 72.222 0.00 0.00 0.00 5.12
3135 3665 4.459089 GGACAGGAGGGCTGCGAC 62.459 72.222 0.00 0.00 0.00 5.19
3138 3668 4.459089 GACGGACAGGAGGGCTGC 62.459 72.222 0.00 0.00 0.00 5.25
3139 3669 2.681778 AGACGGACAGGAGGGCTG 60.682 66.667 0.00 0.00 0.00 4.85
3140 3670 2.363147 GAGACGGACAGGAGGGCT 60.363 66.667 0.00 0.00 0.00 5.19
3141 3671 2.363147 AGAGACGGACAGGAGGGC 60.363 66.667 0.00 0.00 0.00 5.19
3142 3672 2.055042 CCAGAGACGGACAGGAGGG 61.055 68.421 0.00 0.00 0.00 4.30
3143 3673 1.304547 ACCAGAGACGGACAGGAGG 60.305 63.158 0.00 0.00 0.00 4.30
3144 3674 1.886585 CACCAGAGACGGACAGGAG 59.113 63.158 0.00 0.00 0.00 3.69
3145 3675 2.276116 GCACCAGAGACGGACAGGA 61.276 63.158 0.00 0.00 0.00 3.86
3146 3676 2.262915 GCACCAGAGACGGACAGG 59.737 66.667 0.00 0.00 0.00 4.00
3147 3677 1.080230 CTGCACCAGAGACGGACAG 60.080 63.158 0.00 0.00 32.44 3.51
3148 3678 3.051210 CTGCACCAGAGACGGACA 58.949 61.111 0.00 0.00 32.44 4.02
3149 3679 2.433318 GCTGCACCAGAGACGGAC 60.433 66.667 0.00 0.00 32.44 4.79
3150 3680 2.159819 GAAGCTGCACCAGAGACGGA 62.160 60.000 1.02 0.00 32.44 4.69
3151 3681 1.739562 GAAGCTGCACCAGAGACGG 60.740 63.158 1.02 0.00 32.44 4.79
3152 3682 2.091112 CGAAGCTGCACCAGAGACG 61.091 63.158 1.02 0.00 32.44 4.18
3153 3683 3.867771 CGAAGCTGCACCAGAGAC 58.132 61.111 1.02 0.00 32.44 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.