>input_sequence_58636
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AACTCCGT----GCTCGTTC--CACTCCCCTCAGATCACCGC---------------GCCACC--
-----CCAGCCCCCATGGCGCCCACGGCGGCCGGAGCCCGACTGCCCCTGTCGCTGACCGTCTTCATGGCGGTCGCGACG
ACCATGCTGCTGGCGCCCGCGGAGGCTGGCCTGTACGGCGACCGTGACGCGCTCATGGCCCTGCGGAGAGGCCTACAGGA
CCCTGACGGCGCGCTGCGTTCCTGGAGCCCGGAGCTGGGGAACATGAACCCCTGCATCAACTGGTCCCACGTCACCTGCG
ACCGCGTGGCCAACCGCGTCACCGAGATGTGAGTGAGGCG---GCACC---GATCCTTGTTCCCCTCCATACTGCTTCCG
TTCCGTCCC-------------------------CTTCATCCGATTTTCAAAATTTCAATA-CGGTGTTTCTTGTTCTGT
CAGAGTAATCGGGTTTGTGAACCTGTCCGGACCTCTGTCGCCGGAGCTGGGCAAGCTGGGCCAGCTAACCAAACTGTGAG
CCTCTC------TA--T--CCCATCTGTTTCTGCCTGTAGCG----ATTGTTCCGTT----GACGCCGCTGATGGATCAA
A------------------GTATATGGCATGTAATGAACACAGGTGGATTTCGTACACCAATATCCAAGGAACAATCCCT
GAAGAGCTGGGCAACTTGGAGAACCTGAACTCCATGCACCTGCACAACAACAGCCTCTCGGGGCAGATACCCGCATCGCT
CGGGAAACTCAAGTCTCTGAAACAGCTGTGAGTCC---ATGATCTCCTCCCGATA-------------------------
-TTTTTCTTTTCAAGCATGTTCGGCTCGTACAGTGATTC-----------------------------------------
-------------------------TTCTCATGATAAAACAAGTCTGGCTCTGAAGTCTCAACATTTGCATGATGATT--
---------TGACAGGCACCTTCAACAGAACCGCTTGACCGGCCCGATCCCCAGCGAGCTGGATGGGCTGTCCGACCAGA
CGAGTGTGTAAGTAGGACGATTTTCTCAGCGTTAATTCCAGTTGTTCTCTTCTCTCTCGACGATCAATGAATCCAGTGAT
CTTCATCTGCAT-------------TGTTTTGCTTGCAGGAATCTCTCAAGCAACGATCTGTGCGGCCCGATTCCGACAG
ATGGTCCCTTCAAGAACATGAATTCCAGCCTCGCCGACAACCCGCGGCTGGGCGGCAACTGCTAGACCGATGCACGGCGT
T--------GGCGGCCCGCCGGAGTGAAGAATAAACTGGCAGC----ACTACT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr1D_1_TraesCS1D01G308300
ATGCACAAAGTTTTACCACAAACTACAGGTGGCCAAGCACCGTGATTTTAGGAGGATAATGTGTGGGTTGAG-AAGTTAG
CTAGGAGAGAATAATGCACATAG-----------------------------------------------------AAAA
AACATAGACGTTCGGTACCATAGAAAAGAAATTACTATTCATTTGACCAAAATATATATATTGATAGAAATATAACTTTA
CGACAATTAAATTTACTATTCGCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACATGACATTGCTTCACAGATTCAGACGCGTTGTAAGAT--------G
CCATTTGCACATATGACTCGGACAACAGAAATATTTTGCAATCCAATATTGTTCAAGATT-TTTAGATTATATATCAAGC
CATGCATACATATAAATCCTATATATCTACCATG--GTGCTTGACTTCACGGAGTACACTT----TAATAACCGTAAAAA
AACTACACTACGCAT-----------------------------------------------------------------
-----------------------------ACTGCATAATGGATGCGATCAAAATGGCAAAAGCTATAG------------
ATGACTC--TAACAACGACGATAAGTCCAAGTTAAACCGGCAGTTCCGGAGGAAAAGGTGGCCAACTGCCATTGTCCAAA
AAC-TCACCATTTCGTAGCATTTCAAAGGTGGCCAGCTGCCA--TTGTCCAAAACCTTACCTTCTTGGGCAGCACATAGC
AATTCATTTCCCATGCGGTCATCCCAGTGTTGACAAGGAGGTGGAGTAGGACTGTAGGAGTTCACACTCG---TACCACC
ACCCCGTCGCCCGCGCCCTCCTTCCCCTATAAAACCCCGGAGCAAACCA-------------------------------
-AGATCACAAGTCACAACTCCGT----GCTCGTTC--CACTCCCCTCAGATCACCGC---------------GCCACC--
-----CCAGCCCCCATGGCGCCCACGGCGGCCGGAGCCCGACTGCCCCTGTCGCTGACCGTCTTCATGGCGGTCGCGACG
ACCATGCTGCTGGCGCCCGCGGAGGCTGGCCTGTACGGCGACCGTGACGCGCTCATGGCCCTGCGGAGAGGCCTACAGGA
CCCTGACGGCGCGCTGCGTTCCTGGAGCCCGGAGCTGGGGAACATGAACCCCTGCATCAACTGGTCCCACGTCACCTGCG
ACCGCGTGGCCAACCGCGTCACCGAGATGTGAGTGAGGCG---GCACC---GATCCTTGTTCCCCTCCATACTGCTTCCG
TTCCGTCCC-------------------------CTTCATCCGATTTTCAAAATTTCAATA-CGGTGTTTCTTGTTCTGT
CAGAGTAATCGGGTTTGTGAACCTGTCCGGACCTCTGTCGCCGGAGCTGGGCAAGCTGGGCCAGCTAACCAAACTGTGAG
CCTCTC------TA--T--CCCATCTGTTTCTGCCTGTAGCG----ATTGTTCCGTT----GACGCCGCTGATGGATCAA
A------------------GTATATGGCATGTAATGAACACAGGTGGATTTCGTACACCAATATCCAAGGAACAATCCCT
GAAGAGCTGGGCAACTTGGAGAACCTGAACTCCATGCACCTGCACAACAACAGCCTCTCGGGGCAGATACCCGCATCGCT
CGGGAAACTCAAGTCTCTGAAACAGCTGTGAGTCC---ATGATCTCCTCCCGATA-------------------------
-TTTTTCTTTTCAAGCATGTTCGGCTCGTACAGTGATTC-----------------------------------------
-------------------------TTCTCATGATAAAACAAGTCTGGCTCTGAAGTCTCAACATTTGCATGATGATT--
---------TGACAGGCACCTTCAACAGAACCGCTTGACCGGCCCGATCCCCAGCGAGCTGGATGGGCTGTCCGACCAGA
CGAGTGTGTAAGTAGGACGATTTTCTCAGCGTTAATTCCAGTTGTTCTCTTCTCTCTCGACGATCAATGAATCCAGTGAT
CTTCATCTGCAT-------------TGTTTTGCTTGCAGGAATCTCTCAAGCAACGATCTGTGCGGCCCGATTCCGACAG
ATGGTCCCTTCAAGAACATGAATTCCAGCCTCGCCGACAACCCGCGGCTGGGCGGCAACTGCTAGACCGATGCACGGCGT
T--------GGCGGCCCGCCGGAGTGAAGAATAAACTGGCAGC----ACTACTACTA---CTAGCATGCAGCCAGAGAAT
CGGGCGGCGC-CAGTTCATGCATGTACTAGCTACTTAGGTGT-------------------------GGATTCGTGAGCG
AGGTTAATTTAGCTGCGTGCCAGTGCCAGTGCCAG------------AGCAGGCAGGCTAATTTATGTA--TGTTGTGCA
CAAGCCGAGATCGACCGTTGTGGGCT-----------GTTGCCATCGATGGGATGAGTTTTATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATACTTCCGGTACCTAATGGAATCACGCTTA
AGTTGCTGCTCGATCGAATCA---ATTTTCACCGAGTTGCTTTGCTTTGGGTGCTTGAGTTGACCGCATTCGTTCGTTTT
CTGTTCCTGTCGCGTGTCCAGTACCGC--------------------TCACAGGTCAAATTTGACCAATGTTTTTAGGAG
TACTTCAGAACAGAAAATTTAGTTATGTTTTGAGTACTTTGCTCTAGAGTTAGACAAACAAACAAACAAAAATCTTTGAG
TTAGAAAATTTTCATCACATGACTCAACGGTGTGGATGCTACTTGGTAGTACCCACTACA----------TTTTGAGCGG
GCACTACCTTTTGACTTAGGGCACTGATCTGCGCCGGTCGACCGGCCGAAGCGCTCCGCCGGTCATACCAGGACCGCAGG
ATGACTCCATTTGTGGCCGTTAGATTAGAATCCCACGTCATCTTTTCCCTTCCCCACCGCCTCGTCTCAGATCAGATCGA
GATAGATGGGAACAACGTTGACCTTCTGTAGACAAACTGCCCCTCGCAGGTTGCCTCGTCGGCGGCAACACACCATCTCG
CCATGGCCGTCGACGCATCACCGGCGCCTTTGCGGCCGTCGCCTTCACCACGTCCACCCTCTCGCCATCCGTTCGTGATC
TACGCATCAAACCACGCCGTTGTGGCCCTTGCCGTCGCCGGTTGCAACATATTGTACACTCGCCGTCGCAGCCCTCCTGT
CCGTCTCTGGTGCAGCTTCG
>chr1D_1
ATGGACAAAGTTTTACCACAAACTACAGGTGGCCAAGCACTGAGATTTTAAGAGGATGATGTGTGGGTTGAAAAAGTTAG
CTAGGAAAGAATAATGCAAATCTTATCTCATCACACATGAAGAAACGATGTACCAAGTTTAGTTAATAATACCCATAAAA
AACATACATGTTCGGTATCATAGAAAAGAAATTACTATGCATT-GATCAAAATATATACATGGCCATAAATATAACTTCA
TGACAATTAAATTTACTATTCTTTTTTTGTGGGCTAATTAAATATACTATTCGCGTGTGCAAAAAAAAATGTGTGTATGG
AAGGGAGTGGGGGGTGGGTGTGGAAGAGCAAACTAGGAGAAATTATATGG------------------------------
--------------------------------------------------------------------------------
--------------------------------ACATGGCATTGCTTCACAGCTTCAAACGCGTTGTAAGAT--------G
CCATCTTCATATATGACTCGGACAACAAAAATATTTTCTAATCCATTATTGTCCAAGATT-TTTATGTTATATATCAAGC
CATGCATACATATAAATCCTATATATCTACCATG--GTGCTTGACTTCACGGAGTACACTT----TAATAACCGTAAAAA
AACTACACTACGCAT-----------------------------------------------------------------
-----------------------------ACTGCATAATGGATGCCAACAAAATGGCAAAAGCTATATATTACCGGACAT
ATATAATTATAACAACGACGATAAGTCCAAGTTAAACCGGCAGTTCCGGAGGAAAAGGTGGCCAACTGCCATTGTCCAAA
AAC-TCACCATTTCGTAGCATTTCAAAGGTGGCCAGCTGCCA--TTGTCCAAAACCCTACCTTATTGAGCAGCACATTGC
ATTTGATTTCCCATGCCA------CAGTGTTGACAAGGAGGTGGAGTAGGA--------GTTCACACGCGTAC---CATC
ACCCCGTCGCCCGCACCTTCCTTCCCCTATAAAACCCCCCATCAAACCACGGCATGACGATCATCCAAAGCACAGCTCGC
AAGTTCACAAGTCACAACACCGGCCGTGCTCGTCCCAC-----------------TCCCCTCAGATCACCTCCCCAAC--
-----CCAGTCCCCATGGCGCCCAATGCGGCCGTTGCCCGAGTGCCCCTGGCGGTGACCGTCTTCATGGCGGTCACGACG
AGCATGCTGCTGGCGCCCGCGGAGGCTGGCCTGTACAGCGACCGTGACGCGCTCTTGGCCCTGCGAGGCGGCCTACAGGA
CCCCGACGGCGCGCTGCGTTCCTGGATCCTGGAGGTGAACCCCT------------GCGAGTGGACCCAGGTCACCTGCG
ACCGCGTGGCCAACCGCGTCACCGAGATGTGAGTGAGGCCGCCACACC---GGTCCTTCTTCCCTTCCATACTGCTTCCA
TCGTATATTTCAATATTTCTGGACGCCTCGTCCTCTTCATCCGATTTTCAG--------TAC------------------
------AATCGGCCATGCGAACCTGTCCGGACCTCTGTCGCCGGAGCTGGGCAAGCTGGACCAGCTAACCAAACTGTGAG
CCTCTCCCTCTCTA--A--CCCATCTGTTTCTGCCCGT-------------------------------TGATGGATCAA
AATGTATTAACTCTTA----TATATGGCATCTAATGAACACAGGTGGATTTCGTACACCAATATCCAAGGAACAATCCCT
GAAGAGCTGGGCAACTTGGAGAACCTGAACTCCATGCACCTGCACAACAACAGCCTCTCGGGGCAGATACCCGCATCGCT
CGGGAAACTCAAGTCTCTGAAACAGCTGTGAGTCC---ACGATCTCCAGATTTGTTTTCTTTCCG---TCATGTTTTTTT
GTTTTCAAGT----------------------------------------------------------------------
----------------------------------------AAGTTTGGCTCTGAGGTCTGAACATTTGCATGATGAAT--
---------TGATAGGCACCTTCAACAGAACCGCTTGACCGGCCCGATCCCAAGCGAGCTGGATGGGATGTCCGAACAGA
CGAGTGTGTAAGTTAGACGA---------------------TTGTTCTCTTCTCTGTCGACGATCAATTAATCCAGTGAT
CTTCATGTCGATCGTTTTCCCGTCCTGTTTTGCTTGCAGTAATCTATCAAGCAACGATCTGTGCGGCCCGATTCCGACAG
ATGGTCCCTTCAAGAACATCAATTCCAGCCTCGCCGACAACCCACGGCTGGGCGGCAACTGCTAGACCGATGCATGGCGT
T--------GGCGGCCCGCCGGAGTGAAGAATAAACTGGCAGT----ACTACTACTA---CTAGCATGCAGCCAGAGAAT
CGGGCGGCGCCG----------------------------GT-------------------------GTATTCGTGAGTG
AGTTTAATTTAGCTGCGTGCCA------------G------------AGCAGGCAGGCTAATTTATGTA--TGTTGTGCA
CAAGCCGATATCGA------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ATCTATTCACAGAGTTACGTTGCTTTGGGTGCTTGAGTTGACTGCATTCGTTCGTTTT
TCGTTCCTGTCGCG-----------------ACGCTGACATATATGATAACAGGGCAAATTTGACAA-------------
------------------------ATGTTTTTAGTACTTTGCTCTAGAGTTAGACAAACAAACAAA--AAAAACCTTCAA
GTTAGAAATTTTAATTACATGACTCAACGGTGTGGATGCTACTTGGCAGTACCCACTAC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr1A_1
ATGCACACAGTTTTACCACAAACTACAGGTGGCCAAGCACCGACATTTTAAGAGGATGATGTGTGGGTTGAAAAAGG---
----------ATAATGCAAATCTTATCTCATCACACATGAAGAAACGATGTACCAATTTTAGTTAATAATACCCACAAAA
AA--TAAATGTTTGGTACCGTAGAAAAGAAATTTCGATGCATTTGACCAAAATATATACATGGACAGAAATATAACTCCA
CGACCATTAAATCTACTATTCGCACGAGCAAAGAAATGTATGCA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CACATGACATTGCTTCACAGCTTCAGACGCGTTGTAAGATACTAAGATG
CCATCTTCACATATGACTC-GACAACAGGAATATTTTGCAATCCAATATTGTCCAAGATT-TTCAGATTATATATCAAAC
CATGC---------------ATATATCTATCATG--GTGCATGACGACACAGAGTATATATAGTCTAATATCTGTCCAAA
AGCTG--CTATGCAT-----------------------------------------------------------------
-----------------------------AATGCATAATGGATGTGATCAAAACGGCAAAAGCTATATATGACCGGACAT
ATATAATTATAGCATAGACGATAAGTCCAAGTTAAACCGGCAGTTCCAGAGCAAAAGGTGGCCAACTGCCATTGTCCAAA
AAC-TCACCATTTCGTAGCATTTCAAAGGTGGCCAGCTGCCA--TTGTCCAAAACCCTACCTTCTTGAGCAGCACATTGC
ATTTGAGTTCCCATGCCG------CAGTGTTGACAAAGAGGTGGAGTAGGA--------GTTCACACGCG---CACCACC
ACCCCGTCGCCCACGCCTTCCTTCCCCTATAAAACCCCCCATCAAACCACGGCATGACGATCATCCAAAGCACAGCTCGA
AAGTTCACAAGTCACAACACCGGCCGTGCTCGTCCCAC-----------------TC---------------CCCGCC--
-----CCAGTCCCCATGGCGCCCAAGGCGGCCGGAGCCCGAGTGCCCCTGGCGGTGACCGTCTTCATGGCGGTCGTGACG
ACCATGCTGCTGCAGCCCGCGGCGGCTGGCCTGTACGGCGACCGTGACGCGCTCATGGCCCTGCGGAGAGGCCTACAGGA
CCCTGACGGTGCGCTGTATACCTGGATCCCGGAG---------GTGAGCCCCTGCAGCAACTGGTCCCACGTCACCTGCA
ACGGCCAGGCCAACCGCGTCACCGAGATGTGAGTGAGGCG---ACACC---GATCCTTCTTCCCTTCCATACTGCTTCCG
TTCCGTCGTATA----------------------CTTCATCCGATTTTCAA--------TACGGGGTTTCTTTGTTCTGT
CAGAGTAATCGGCTTTGTGAACCTGACCGGACCTCTGTCGCCGGAGCTGGGCAAGCTGGACCAGCTAACCAAACTGTGAG
CCTCTC------TCTCTAACCCATCTGTTTCTGCCCGTAGCG----ATTGTTCCGTT----GACGCGGTTGATGGATCAA
AATGTACTATAAACTCT-----TATGGCATCTAATGA--ACAGGTGGATTTCGTACACCAATATCCAAGGAACGATCCCT
GAAGAGCTGGGCAACTTGGAGAACCTGAACACCATGCACCTGCACAACAACAGCCTCTCGGGGCAGATACCTGCATCGCT
CGCGAAACTCAAGTCTCTGAAACAGCTGTGAGTCC---ATGATCTCCAGTTTTTTTTTCTTCTTCTCTTCATGTTTTTTG
TTTTTGCTTTTCAAGCATCGAATTGCCTCGTAGTACAATATTGGATTTGAAGTCTGAAGTCTGGTAAACAAGTTTCATGA
TAAAACAAAAACAAAAAATTTTGAATTCTCATGATAAAACAAGTTTGGCTCTGATGTCTGAACATTTGCATGATGATT--
---------TGGCAGGCACCTTCAACAGAACCGCTTGACCGGCCCGATCCCCAGCGAGCTGGATGGGCTGTCCGACCAGA
CGAGCGTGTACGTAGGACGATTTTCT------------CAGTTGTTCTCTTCTCTCTCGACGATCAATTAATCCAGTGAT
CTTCATCTCCAT-------------TGTTTTGCTTGCAGTAATCTGTCAAACAACGATCTGTGCGGCCCGATTCCGACGG
ATGGTCCCTTCAAGAACATCAATTCCAGCCTCGCCGACAACCCGCGGCTGGGCAGCAACTGCTAGGCCGATGCACGGCGT
T--------GGCTGCCCGCCGGAGTGAAGAATAAACTGGGTACTCCTACTCCTACTA---CTAGCATGCAGCCAGAGAAT
CGGGTGGCGCCG----------------------------GTTCATGCATGC----ACGACTTAGGTGGATTCGTGAGCG
AGGTTAATTTAGCTGTGTGCCA------------GTGCCAG----AGAGCAGGCAGGCTAATTTATGTATGTGTTGTGTA
CAAGCCGAGATCGATCGTTGTGGGCTTGTT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr1A_464
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ACATTGCTTCACAGCTTCAGATGCGTTGTAAGAT--------G
CCATGTTCACATATGACTCAGACAACAGAAATATTTTGCTATCGACTATTGTCCAAGATTTTTGAGGTTATATATGAAGC
CATGC---------------ATACGGAGCAAAATGAGTGCATGACTTCACGGAGTACACTT----CAATAACTGTCAAAA
AACTA--CTATGCAT-----------------------------------------------------------------
-----------------------------ATTGCATAATGGATGCGATCAAAATGGCAACAGTTATATATGACCGGACAT
ATTACTC--TAACAACGATGATAAGTCCAAATTAAACCGGTGTTTCCGGAGGAAAAGGTGGCCAACTGCCATTGTCCAAA
AAGTTCACCATTTCGTAGCATTTCAAAGGTGGCCAGCTGCCA--TTGGCCAAAACTTATCCATTTTGGGCTGCACGTAGC
ATTTGATTTCCCATGCCA------CAGTGTTGACAAGGAGGCGGAGTAGGA--------GTTCACACGCGTACTACCACC
ACCCCGTCGCCAGCACCTTCCTTCCCCTATAAACCCCCCGCCCCCCATCAAA------------CCAAAGCACAGCTCGC
AAGTTCACAAGTCATAAGACCGGCCGTGCTCGTCCCACACTCCCCTCAGATCACCTC---------------CCCGCC--
-----CCAGTCCCCATGGCGCCCAATGCGGCCGTTGCCCGAGTGCCCCTGGCGGTGACCATCTTCGTGGCGGTCGCGACG
AGCATGCTGCTGGCGCCCGCGGAGGCTGGCCTGTACAGCGACCGTGACGCGCTCTTGGCCCTGCGGGGCGGCCTACAGGA
CCCTGACGGCGCGCTGCGTTCCTGGATCCTGGAGGTGAACCCCT------------GCGAGTGGACCCAGGTCACCTGCG
ACCGCGTGGCCAACCGCGTCACCGAGATGTGAGTGAGGCC---ACACC---GATCCTTCTTCCCTTCCATACTCCTTCCC
TCGTATATTTCATTATTTCTGGACGCCTCGTCTTCTTCATCCCATTTTCAG--------TAC------------------
------AATCGGCCATGCGAACCTGTCCGGACCTCTGTCGCCGGAGCTGGGCAAGCTGGACCAGCTAACCAAACTGTGAG
CCTCTC------TCTCTGACCCATCTGTTTCTGCCC-------------------------------GTTGATGGATCAA
AATGTTTTAGCTCTTATACGTATATGGCATGTAATGAGCACAGGTGGATTTCGTGGACCAATATCCAAGGAACGATCCCT
GAAGAGCTGGGTAACTTGGAGAACCTGAACTCCCTGCACTTGCACAACAACAGCCTCTCGGGGCAGATACCCGCATCGCT
CGGGAAACTCAAGTCTCTGAAACAGCTGTGAGTCC---ATGATCTCCCGATGT------TTTCCG---TCATGTTTTTTG
TTTTTCAAGCGTCCAGTTGCTCATAGTTCCTACAG---------------------------------------------
------------------------------------AAACAAGTTTGGATCTGAACATTTATATATACCCTCCTAATACA
CGGACTGCATGGTAGGCACCTTCAACAGAACCACTTGACCGGCCCGATCCCCAGCGAGCTGGATGGGCTGTCCGACCAGA
CGAGTGTGTAAGTAGGACGATTTTCTCAGC----ATTCCAGTTGTTCTCTTCTCTCTCGACGATCAATTAATCCAGTGAT
CATCATCTCGATCGTTTTCCCGTCCTGTTTCGACTGCAGGAACCTCTCAAGCAACGATCTGTGCGGCCAGATTCCGACAG
ATGGTCCCTTCAAGAACATCAATTCCAGCCTCGCCGACAACCCACGGCTGGGTGGCAACTGCTAGACCGATGCAAGATGC
ACCATGCACGGCGGCCCGCCGGAGTGAAGAATAAACTAGCAGT----ACTACTACTA---CTAGCGTGCAGCCAGAGAAT
CGGGTGGCGCCG----------------------------GTTCATGCATGC----ACTACTTAGGTGGATTCGTGAGGG
TGGTTAATTAGCTGA-------------------------------------GCAGGCCAATTTATGGA--TGTTGTGTA
CAAACCGAGATCGATCGTTGTGGGCTTGTTTCTGGCTGTTGCCATCAATGGGATGAATTACATATATACT----------
-----------------------------------------------------TTCCCGTACCTAATGGAATCGCGATTA
AGTTGCTGCTCTGCTCGATCGAATCTGTTCACG-----------------------GAGTTGACTGCATTCGTTCGTTCT
CTGTTCCTGTCGCGCGTTCAGTACCGCTTCAAAGCTGACCTATATGATCACAGGTCAAATTTAACGAATA-TTTTAGTAG
TACTTCACAACAGAAAATTGAGTTATGTTTTGAGTACTTTGCTCTAGAGTTAGACAAACAAACAAA--AAAAACTTTGAG
TTAGAAAATTTTAATTACACGCCTCAACGGTGTGGATGCTACTTGGTAGTAC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr1B_540
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCCAAGATTGTCCAAGATT-TTTAGATTATATATCAAAC
CATGC---------------ATACATCCATCATG--GTGCATGACAACACAGTGTATATATAGTTTAGTATCTGTCCAAA
AACTA--CTATGCAT-----------------------------------------------------------------
-----------------------------AATGCATAATGGATGCGATCAGAATGGCAAAAGCTATATATGACCGGACAT
ATATAATTATAACATAGACGATAAGTCCAAGTTAAAACGGCAGTTC--GAGGAAAAGGTGGCCAACTGCCATTGTCCAAA
AAC-TCACCATTTCGTAGCATTTCAAAGGTAACCAGCTGCCA--TTGTCCAAAACCTTACCTTCTTGAGCAGCACATTGC
ATTTGATTTCCCATGGCA------CAGTGTTGACAAGGAGGTGGAGCAGGA--------CTTCACACGCG---TACCACC
ACCCCGTCGCCCGCGCCTTCCTTCCCCTATAAAACCCCGCATCTAACCACGGCATGACGATCATCCAAAGCACAGCTCGC
AAGTTCACAAGTCACAACACCGT----GCT------------CCCTTAGATTACCGC---------------GCCACCCC
AGCCCCCAGTCCCCATGGC---------GGCCGGAGCCCGAGTGCCCCTGGCGGCGACCGTCTTCGTGGCGGTCGCGTCG
ACCATGCTGCTGGCTGCCGCGGCGGCTGACCTGGACGGTGACCGTGACGCGCTCATGGCCCTCCGGAGAGGCCTACAGGA
CCCTGACGGCGCGCTGCGTTCCTGGAGCCCGGAGCTGGGGAACGTGAACCCCTGCAGCAACTGGTCCCACGTCACCTGCA
ACAGCCAGGCCAACCGCGTCACCGAGATGTGAGTGAGGCG---ACACC---GATCCTTCTTCCTTTCCGTACTGCTTCTG
TTCCATCGT---ATATTTCTGACCGCCTCGTCTTCTTCATCCGATTTTCAA--------TACGGGGTTTCTTTGTTCTGT
CAGAGTAATCGGCTTTGTGAACCTGTCCGGACCTCTGTCGCCGGAGCTGGGCAAGCTGGGCCAGCTAACCAGACTGTGAG
CCTCTC------TA--A--CCCATCTGTTTCTGCCTGTGGCGATTAATTGTTCCGTC----GACGCCGTTGATGGATCAA
AATGTATT---AACTCT-----TATGGCATCTAATGA--ACAGGTGGATTTCGTACACCAATATCCAAGGAACGATCCCT
GAAGAACTGGGCAACTTGGAGAACCTGAACACCATGCACCTGCACACCAACAGCCTCTCGGGGCACACCAACAGCCC-CT
CGGGAAACTCAAGTCTCTGAAACAGCTGTGAGTCC---ATGATCTCCTCCCGATG-------------------------
-TTTTTCTTTTCAAGCATGTTCTGCTCGTACAGTGCATG-----------------------------------------
------------------------ATTCTCATGATAAAACAAGTTTGGCTCTGAAGTCTGAACATTTGCATGATGATT--
---------TGACAGGCACCTTCAACAGAACCGCTTGACCGGCCCGATCCCAAGCGAGCTGGATGGGCTGTCCGACCAGA
CGAGCGTGTAACTAGGACGATTTTCTCAG------------TTGCTCTCTTCTCTCTCGACGATCAATTAATCCAGTGAT
CTTCATCTCCAT-------------TGTCTTGGTTGCAGTAACCTCTCAAACAACGATCTGTGCGGCCCGATTCCGACAG
ATGGTCCCTTCAAGAACATCAATTCCAGCCTCGCCGACAACCCGCGGTTGGGCGGCAACTGCTAGACCTAGGCACGGCGT
T--------GGCTGCCCGCCGGAGTGAAGAATAAACTGGCA-------------------------TGCAGCCAGAGAAG
CCGGCGGCGCCG----------------------------GTTCATGCATGTACGTACTGCTTAGGTGGATTCGTGAGCG
AGTTTAATTTAGCTGCGTGCCA------------GTGCCAGTGCCAGAGCAGGCAGGCTAATTTACGTA--TGATGTGTA
CAAGCCGAGATCGATCGTTGTGGGCTTGTT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr1B_593
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ATCTTATATATCTACCATG--GTGCATGACTTCACGGAGTACACTT----TAATAACCGTCAAAA
AACTA--CTCCCTCCGTCTCATAATACAGGACGTTTTTTGACACTAGTGTAGTGTCAAAAAAAAGTCTTACATTATGAGA
CGGAGGGAGTACTATGCAACCGTCAAAAAACTGCATAATGGATGCGATCAAAATGGCAAAAGCTGTATATGACCGGGCAT
ATGACTC--TAACAACGACGGTAAGTCCAAATTAAACCGGCAGTTCCGGAGGAAAAGGTGGCCAGCTGCCATTGTCCAAA
A-GTTCACCATTTCTTAGCATTTCAAAGGTGGCCAGCTGCCACATTGTTCAAAACCTTACTTTCTTGAGCAGCACATTGC
ATTTGATTTCCCATGCCA------CAGTGTTGACAAGGAGGTGGAGCAGGA--------CTTCACACGCG---TACCACC
ACC--------------TTCTTTCCCCTATAAAACCCCGCAGCAAACCACGGCATGAAGATCATCCAAAGCACAGCTCGC
AAGTTCACTAGTCACAACACCGGCCGGGCTCGTCC--CACTCCCCTCAGATCAGCTC---------------CCCACC--
-----CCAGTCCCCATGGC---------GGCCGGAGCCCGAGTGCCCCTGGCGGTGACCGTCTTCGTTGTGGTCGGGTCG
ACCATGCTGCTGGCAGCCGCGGCGGCTGACCTGGACGACGACCGTAGCGCGCTCGTGGACCAGTGGACCCGCCTACAGGA
CCCTGACGGCGCGCTGGGTATCTGGAACCCGGAGCTGAGCCCCT------------GCGACTGGCCCCACGTCACCTGCG
ACGGCCAGGGCAACCGCGTCACCGAGATGTGAGTGAGGCC---ACACCAACGATCCTTCTTCCCTTCCATACTGCTTCTG
TCGTATA---------TTCTGGACGCTTCGTCCTCTTCATCCGATTTTCAA--------TA-GGGGTTTCTTTGATCTGA
TAGAAAAATCGGCCATGCGAACCTGTCCGGACCTCTGTCGCCGGAGCTTGGCAAGCTGGACCAGCTAACCAAACTGTGAG
CCTCTC------TA--TAACCCATCTGTTTCTGCCTCTATTG----ATTGTTACTTTCCTTGACGAGGTTGATGGAT---
--------------------TATATGGCATCTAATGAACACAGGTGGATTTCGTGGACCAATATCCAAGGAACGATTCCT
GAAGAGCTGGGAAACTTGGAGAACCTGAATTCCATGCACTTGCACAACAATAGCCTCTCAGGGCAGATACCCGCATCGCT
CGGGAAACTCAAGTCTCTGAAACAGCTGTGAGTCCGTCATGATCTCCTCCCGATG-------------------------
-TTTTTCTTTTCAAGCATGTTCTGCTCGTACAGTGAC-------------------------------------------
--------------------------TCTCATGATAAAACAAGTCTGGCTCTGAAGTCTGAACATTTGCATGATGATT--
---------TGACAGGCACCTTCAACAGAACCGCATGACCGGCCCGATCCCCAGCGAGCTGGATGGGCTGTCCGACCAGA
CGAGTGTGTAAGTTGGACGAGTTTCTCAGCGTTAATTCCAGTTGTTCTCTTCTCTCTCGACGATCAATTAATCCAATGAT
CTTCATCTCTATCGTTTTCCCATCCTATTTTGCTTGCAGTAACCTCTCAAACAACGATCTGTGCGGCTCGATTCCGACAA
ATGGTCCCTTCAAGAACATCAATTCCAGCCTCGCCGACAACCCGCGGCTGGGCAGCAACTGCTAGACCGATGCACGGCGG
CCC----------GCCCGCCGGAGTGAAGAATAAACTGGCAGT----ACTACTACTACTACTAGCAAGCAGCCAGAGAAT
CGGGCGGCGCCCGGTTCATGCATGTATTA-------------------------------CTTGGGTGGATTCGTGAGTG
AGTTTAATTTAGCTGCGTGCCA----------------------------------------------------------
--------------------------------------------TCCATGGAATGAGTTACATATATAT-----------
---------------------------------------------------ACTTCCCGTACCTAACGGAATCGCGATTA
AGTTGCTGCTCTGCTCGATCGAATATATTCACAGAGTTGCATTGCTCTGGGTGCTTGAGTTGACTGCACTCGTTCGTTCT
CTGTTCCTGTCGTGCGTTCAGAACAGCTTCGACGCTGACATATATGATCACAGGTCAAATTTGACGAATG-TTTGC--AG
TACTTCAGAACAGAAAATT-AGTTATGTTTTGAGTACTTTGCTCTAGAGTTAGACAAACAAACAAA--AAAACATTTGAG
TTAGAAAATTATAATTACATGCCTCAACGGTGTGGATGCTATTTGGCAGTACAGTACCCTTTTGAGATTTTTTTGAGCGG
GCACTACCTTTTG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>SNPs
------------------------------------------S-------S------S-------------S--------
------S-----------S--SS---------------------------------------------------------
------S-S-----------------------------S-------------------S--S--S-------------S-
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S----------------------------
----S-S---------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S--S-----------S-SSSSSS---------------------------SSSSSSSS--------S------------
-----------------S--------------------------------------------------------------
---S--------------S--------------S----------------------------------------------
---------S--------------S----------------S--------S--S--------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------S-----------------------
-------------------------------------------S--------------S-----S---------------
-------SS------------------------------------------SSSSSSSS---S--SS--SS---------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
----------------------S-------------S-S-----------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------S-----------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-------------S--SSSSSSSSSSS----------------------------------------
----------------------SSSSSSSSSSSS----------------------------------------------
--------------S-------------------------------S------------SS--------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---------------S--S---
-----------SSSSSS---S-----S-----S-------S-----------------------S---------------
--------------S--S-----------------------------------------------S----S------S--
-------------------S----------------------------------------------SS----S-------
------------S--S-------------------------------------------S--------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_1064
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CATTTCCCATGCGGTCATCC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_2752
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CCAGAGCAGGCAGGCTAATT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
