Multiple sequence alignment - TraesCS1D01G307900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G307900 chr1D 100.000 3132 0 0 1 3132 404068525 404065394 0.000000e+00 5784.0
1 TraesCS1D01G307900 chr1A 91.251 1143 52 28 939 2060 499737070 499735955 0.000000e+00 1513.0
2 TraesCS1D01G307900 chr1A 89.655 319 23 6 2212 2521 499735889 499735572 6.290000e-107 398.0
3 TraesCS1D01G307900 chr1A 95.588 68 1 1 2086 2151 499735958 499735891 1.190000e-19 108.0
4 TraesCS1D01G307900 chr1A 90.667 75 7 0 1783 1857 27361948 27362022 1.990000e-17 100.0
5 TraesCS1D01G307900 chr1A 94.444 54 1 1 2509 2560 499735551 499735498 7.200000e-12 82.4
6 TraesCS1D01G307900 chr1B 91.910 890 47 14 863 1745 543480854 543479983 0.000000e+00 1221.0
7 TraesCS1D01G307900 chr1B 87.931 696 70 7 1 688 543483996 543483307 0.000000e+00 808.0
8 TraesCS1D01G307900 chr1B 84.553 492 32 15 2458 2930 543478890 543478424 6.160000e-122 448.0
9 TraesCS1D01G307900 chr1B 91.703 229 16 3 2241 2467 543479989 543479762 6.520000e-82 315.0
10 TraesCS1D01G307900 chr1B 89.216 102 10 1 587 688 543483222 543483122 3.280000e-25 126.0
11 TraesCS1D01G307900 chr1B 87.912 91 7 4 785 871 543482376 543482286 1.540000e-18 104.0
12 TraesCS1D01G307900 chr3A 94.406 143 7 1 2988 3129 635532033 635532175 5.260000e-53 219.0
13 TraesCS1D01G307900 chr5D 91.781 146 11 1 2988 3132 529059831 529059976 5.300000e-48 202.0
14 TraesCS1D01G307900 chr5D 90.909 99 8 1 3034 3131 386127174 386127272 7.050000e-27 132.0
15 TraesCS1D01G307900 chr5D 90.526 95 7 2 1771 1864 294637665 294637758 1.180000e-24 124.0
16 TraesCS1D01G307900 chr5D 96.970 66 1 1 2145 2209 476275257 476275192 3.300000e-20 110.0
17 TraesCS1D01G307900 chr5D 90.667 75 7 0 1783 1857 294637751 294637677 1.990000e-17 100.0
18 TraesCS1D01G307900 chr5D 92.647 68 3 2 2143 2210 469062810 469062745 2.570000e-16 97.1
19 TraesCS1D01G307900 chr3B 88.194 144 14 3 2990 3132 773467783 773467642 5.370000e-38 169.0
20 TraesCS1D01G307900 chr3B 89.691 97 9 1 3033 3128 741582113 741582017 4.240000e-24 122.0
21 TraesCS1D01G307900 chr3B 95.385 65 1 1 2147 2209 741709784 741709848 5.530000e-18 102.0
22 TraesCS1D01G307900 chr3B 97.826 46 1 0 2931 2976 514005330 514005375 2.590000e-11 80.5
23 TraesCS1D01G307900 chr2D 92.000 100 7 1 3034 3132 650719188 650719089 4.210000e-29 139.0
24 TraesCS1D01G307900 chr2D 89.286 84 8 1 1783 1865 579535259 579535342 1.540000e-18 104.0
25 TraesCS1D01G307900 chr2D 92.857 56 4 0 2931 2986 607311388 607311333 7.200000e-12 82.4
26 TraesCS1D01G307900 chr2A 92.000 100 7 1 3034 3132 36198020 36197921 4.210000e-29 139.0
27 TraesCS1D01G307900 chr7D 89.109 101 10 1 3026 3125 23075114 23075214 1.180000e-24 124.0
28 TraesCS1D01G307900 chr7D 90.667 75 7 0 1783 1857 165657940 165657866 1.990000e-17 100.0
29 TraesCS1D01G307900 chr7D 89.655 58 6 0 2930 2987 587384823 587384880 1.200000e-09 75.0
30 TraesCS1D01G307900 chr7A 89.000 100 10 1 3034 3132 486922605 486922506 4.240000e-24 122.0
31 TraesCS1D01G307900 chr5A 88.421 95 9 2 1771 1864 387927455 387927548 2.550000e-21 113.0
32 TraesCS1D01G307900 chr5B 96.923 65 1 1 2145 2208 583738390 583738326 1.190000e-19 108.0
33 TraesCS1D01G307900 chr4A 96.923 65 0 2 2144 2208 741472616 741472554 1.190000e-19 108.0
34 TraesCS1D01G307900 chr4A 90.411 73 3 4 2147 2217 336064342 336064412 3.330000e-15 93.5
35 TraesCS1D01G307900 chr6A 95.522 67 2 1 2145 2210 104308489 104308555 4.270000e-19 106.0
36 TraesCS1D01G307900 chr2B 95.455 66 2 1 2144 2209 790751515 790751451 1.540000e-18 104.0
37 TraesCS1D01G307900 chr2B 92.857 56 4 0 2931 2986 772635067 772635012 7.200000e-12 82.4
38 TraesCS1D01G307900 chr2B 90.909 55 4 1 2923 2977 770104079 770104132 4.330000e-09 73.1
39 TraesCS1D01G307900 chr2B 87.719 57 7 0 2931 2987 66524718 66524774 2.020000e-07 67.6
40 TraesCS1D01G307900 chr2B 87.500 56 7 0 2931 2986 47535331 47535276 7.250000e-07 65.8
41 TraesCS1D01G307900 chr2B 95.122 41 2 0 2931 2971 747505894 747505934 7.250000e-07 65.8
42 TraesCS1D01G307900 chr6D 95.385 65 2 1 2145 2208 86643236 86643300 5.530000e-18 102.0
43 TraesCS1D01G307900 chr6D 89.333 75 8 0 1783 1857 65053108 65053182 9.250000e-16 95.3
44 TraesCS1D01G307900 chr6B 90.667 75 7 0 1783 1857 139885221 139885295 1.990000e-17 100.0
45 TraesCS1D01G307900 chrUn 90.909 66 4 2 2927 2992 88622081 88622144 1.550000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G307900 chr1D 404065394 404068525 3131 True 5784.000000 5784 100.000000 1 3132 1 chr1D.!!$R1 3131
1 TraesCS1D01G307900 chr1A 499735498 499737070 1572 True 525.350000 1513 92.734500 939 2560 4 chr1A.!!$R1 1621
2 TraesCS1D01G307900 chr1B 543478424 543483996 5572 True 503.666667 1221 88.870833 1 2930 6 chr1B.!!$R1 2929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.034476 GACCCCTCGTTTCCTCGTTT 59.966 55.0 0.00 0.00 0.0 3.60 F
714 1207 0.036732 TTGAAACATGAGGGAGCGCT 59.963 50.0 11.27 11.27 0.0 5.92 F
1979 4291 0.037447 GGTCTTGCCTGCTTCCTCTT 59.963 55.0 0.00 0.00 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 3887 0.109086 CTAGCATAGATCCGGCGTGG 60.109 60.0 6.01 0.0 42.77 4.94 R
2072 4388 0.034896 ACAACGAGGTGCGAAGGATT 59.965 50.0 0.00 0.0 44.57 3.01 R
2996 6257 0.039074 CGGTGCTAGATCACGATCCC 60.039 60.0 3.39 0.0 38.58 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.228822 CGCTACCTTTGCAAATCCAACT 59.771 45.455 13.23 0.00 0.00 3.16
61 62 0.034476 GACCCCTCGTTTCCTCGTTT 59.966 55.000 0.00 0.00 0.00 3.60
62 63 1.273327 GACCCCTCGTTTCCTCGTTTA 59.727 52.381 0.00 0.00 0.00 2.01
112 113 2.150397 ACTCTAACAACGAGTGGTGC 57.850 50.000 0.00 0.00 40.07 5.01
128 137 4.342378 AGTGGTGCTATGTATCTTCATCGT 59.658 41.667 0.00 0.00 0.00 3.73
129 138 5.535030 AGTGGTGCTATGTATCTTCATCGTA 59.465 40.000 0.00 0.00 0.00 3.43
131 140 5.535030 TGGTGCTATGTATCTTCATCGTAGT 59.465 40.000 0.00 0.00 0.00 2.73
136 145 8.669243 TGCTATGTATCTTCATCGTAGTAGATG 58.331 37.037 0.89 0.89 46.90 2.90
143 152 2.885266 TCATCGTAGTAGATGGAGCACC 59.115 50.000 7.06 0.00 45.88 5.01
152 161 1.421268 AGATGGAGCACCTGTTCAACA 59.579 47.619 0.71 0.00 37.04 3.33
161 170 4.221262 AGCACCTGTTCAACAATGCAATAT 59.779 37.500 22.40 5.11 40.69 1.28
223 232 2.488153 GCCAACCTCCATAGAACAACAC 59.512 50.000 0.00 0.00 0.00 3.32
236 245 5.652994 AGAACAACACAACCTTTTGCTTA 57.347 34.783 0.00 0.00 36.00 3.09
240 249 4.142249 ACAACACAACCTTTTGCTTAGACC 60.142 41.667 0.00 0.00 36.00 3.85
248 257 1.896220 TTTGCTTAGACCTGCACCTG 58.104 50.000 0.00 0.00 39.05 4.00
255 264 1.821332 GACCTGCACCTGCCATAGC 60.821 63.158 0.00 0.00 41.18 2.97
257 266 2.124983 CTGCACCTGCCATAGCGT 60.125 61.111 0.00 0.00 44.31 5.07
259 268 0.877649 CTGCACCTGCCATAGCGTAG 60.878 60.000 0.00 0.00 44.31 3.51
309 318 6.462207 CCAATCGTCAGAATTCATAGGTCTCT 60.462 42.308 8.44 0.00 0.00 3.10
312 321 5.888724 TCGTCAGAATTCATAGGTCTCTCTT 59.111 40.000 8.44 0.00 0.00 2.85
354 363 9.640963 TCTTGCTCTTTGTACTTAATAGAAGAC 57.359 33.333 0.00 0.00 0.00 3.01
355 364 9.424319 CTTGCTCTTTGTACTTAATAGAAGACA 57.576 33.333 0.00 0.00 0.00 3.41
403 412 1.184970 TGGCCTTTGGTTGCTAAGCC 61.185 55.000 3.32 0.00 0.00 4.35
406 415 1.560505 CCTTTGGTTGCTAAGCCCAT 58.439 50.000 0.00 0.00 0.00 4.00
410 419 3.449746 TTGGTTGCTAAGCCCATAAGT 57.550 42.857 0.00 0.00 0.00 2.24
423 432 3.744660 CCCATAAGTCATCTAGTTGGCC 58.255 50.000 0.00 0.00 0.00 5.36
430 439 3.702045 AGTCATCTAGTTGGCCTGTACTC 59.298 47.826 3.32 0.00 0.00 2.59
431 440 3.447586 GTCATCTAGTTGGCCTGTACTCA 59.552 47.826 3.32 0.00 0.00 3.41
432 441 4.081642 GTCATCTAGTTGGCCTGTACTCAA 60.082 45.833 3.32 0.00 0.00 3.02
434 443 2.230508 TCTAGTTGGCCTGTACTCAACG 59.769 50.000 3.32 0.00 43.70 4.10
457 466 5.468746 CGGAGTCTTTACAATTTCCTCAACA 59.531 40.000 0.00 0.00 0.00 3.33
461 470 6.434340 AGTCTTTACAATTTCCTCAACATCCC 59.566 38.462 0.00 0.00 0.00 3.85
464 473 6.588719 TTACAATTTCCTCAACATCCCTTG 57.411 37.500 0.00 0.00 0.00 3.61
474 483 3.394274 TCAACATCCCTTGACAGGAAGAA 59.606 43.478 0.00 0.00 44.19 2.52
477 486 4.338879 ACATCCCTTGACAGGAAGAAATG 58.661 43.478 0.00 0.00 44.19 2.32
483 492 2.844946 TGACAGGAAGAAATGACGCAA 58.155 42.857 0.00 0.00 0.00 4.85
489 498 5.298276 ACAGGAAGAAATGACGCAACTTTTA 59.702 36.000 0.00 0.00 0.00 1.52
493 502 6.032460 GGAAGAAATGACGCAACTTTTATTCG 59.968 38.462 13.79 0.00 36.71 3.34
496 505 6.577427 AGAAATGACGCAACTTTTATTCGTTC 59.423 34.615 0.00 0.00 33.21 3.95
508 517 5.766702 TTTATTCGTTCGACGTTGCTAAT 57.233 34.783 0.00 0.00 43.14 1.73
530 539 4.051237 TGATGCTTCGATAAATCCACTCG 58.949 43.478 0.00 0.00 0.00 4.18
532 541 4.322080 TGCTTCGATAAATCCACTCGAT 57.678 40.909 0.00 0.00 40.69 3.59
536 545 7.599171 TGCTTCGATAAATCCACTCGATAATA 58.401 34.615 0.00 0.00 40.69 0.98
540 549 8.407457 TCGATAAATCCACTCGATAATATTGC 57.593 34.615 0.00 0.00 36.57 3.56
572 581 3.977427 TCATACATGCGATAGGACACAC 58.023 45.455 0.00 0.00 41.52 3.82
578 587 1.893137 TGCGATAGGACACACTGAACT 59.107 47.619 0.00 0.00 0.00 3.01
581 590 3.746492 GCGATAGGACACACTGAACTTTT 59.254 43.478 0.00 0.00 0.00 2.27
593 602 5.156355 CACTGAACTTTTCATTGGAATCCG 58.844 41.667 0.00 0.00 39.30 4.18
599 608 6.442513 ACTTTTCATTGGAATCCGATTCTC 57.557 37.500 18.46 10.62 39.24 2.87
618 627 4.070009 TCTCGTTACAAGCAGTAGTGAGA 58.930 43.478 0.42 13.55 39.97 3.27
624 633 2.164624 ACAAGCAGTAGTGAGATCGTCC 59.835 50.000 0.42 0.00 0.00 4.79
625 634 2.130272 AGCAGTAGTGAGATCGTCCA 57.870 50.000 0.42 0.00 0.00 4.02
637 646 5.923684 GTGAGATCGTCCATTCCTATTCTTC 59.076 44.000 0.00 0.00 0.00 2.87
666 859 2.485479 GCCCTGACTTCAAAGTGTCTCA 60.485 50.000 0.00 0.00 39.88 3.27
672 865 5.684704 TGACTTCAAAGTGTCTCATTCCTT 58.315 37.500 0.00 0.00 39.88 3.36
677 870 5.005740 TCAAAGTGTCTCATTCCTTGATGG 58.994 41.667 0.00 0.00 32.72 3.51
679 872 2.575279 AGTGTCTCATTCCTTGATGGCT 59.425 45.455 0.00 0.00 32.72 4.75
688 881 0.752009 CCTTGATGGCTGCTCTGCAT 60.752 55.000 0.00 0.00 38.13 3.96
706 1199 3.057104 TGCATGGAAGCTTGAAACATGAG 60.057 43.478 23.38 7.90 40.92 2.90
707 1200 3.675228 GCATGGAAGCTTGAAACATGAGG 60.675 47.826 23.38 7.41 40.92 3.86
713 1206 0.449388 CTTGAAACATGAGGGAGCGC 59.551 55.000 0.00 0.00 0.00 5.92
714 1207 0.036732 TTGAAACATGAGGGAGCGCT 59.963 50.000 11.27 11.27 0.00 5.92
715 1208 0.674581 TGAAACATGAGGGAGCGCTG 60.675 55.000 18.48 0.54 0.00 5.18
716 1209 0.674895 GAAACATGAGGGAGCGCTGT 60.675 55.000 18.48 1.38 0.00 4.40
717 1210 0.250901 AAACATGAGGGAGCGCTGTT 60.251 50.000 18.48 9.19 0.00 3.16
718 1211 0.250901 AACATGAGGGAGCGCTGTTT 60.251 50.000 18.48 0.00 0.00 2.83
719 1212 0.250901 ACATGAGGGAGCGCTGTTTT 60.251 50.000 18.48 0.00 0.00 2.43
742 1235 5.988310 TTTTTGAGACAATCATGGAGCAT 57.012 34.783 0.00 0.00 37.89 3.79
743 1236 5.988310 TTTTGAGACAATCATGGAGCATT 57.012 34.783 0.00 0.00 37.89 3.56
765 1258 1.974265 TTTTGGACAATGACGGAGCA 58.026 45.000 0.00 0.00 0.00 4.26
803 1652 1.825090 TGACGGAGCATTGCTGAATT 58.175 45.000 17.51 0.00 39.88 2.17
811 1660 4.285292 GAGCATTGCTGAATTCGGTATTG 58.715 43.478 17.51 16.88 39.88 1.90
822 1671 0.988832 TCGGTATTGGAGCCCAGTTT 59.011 50.000 0.00 0.00 33.81 2.66
932 3225 3.516578 GTGACCAACGGAGGAGAAG 57.483 57.895 2.13 0.00 0.00 2.85
978 3271 1.475403 CACGTCCTATCCACACTCCT 58.525 55.000 0.00 0.00 0.00 3.69
989 3283 1.674980 ACACTCCTCGGTCGACTCC 60.675 63.158 16.46 0.00 0.00 3.85
990 3284 1.674651 CACTCCTCGGTCGACTCCA 60.675 63.158 16.46 0.00 0.00 3.86
991 3285 1.674980 ACTCCTCGGTCGACTCCAC 60.675 63.158 16.46 0.00 0.00 4.02
992 3286 1.674651 CTCCTCGGTCGACTCCACA 60.675 63.158 16.46 0.00 0.00 4.17
993 3287 1.924320 CTCCTCGGTCGACTCCACAC 61.924 65.000 16.46 0.00 0.00 3.82
994 3288 2.265904 CCTCGGTCGACTCCACACA 61.266 63.158 16.46 0.00 0.00 3.72
995 3289 1.081376 CTCGGTCGACTCCACACAC 60.081 63.158 16.46 0.00 0.00 3.82
996 3290 1.792118 CTCGGTCGACTCCACACACA 61.792 60.000 16.46 0.00 0.00 3.72
1004 3298 0.739462 ACTCCACACACACACACACG 60.739 55.000 0.00 0.00 0.00 4.49
1330 3631 2.642254 CCAGGTCCCGTTCTACGCA 61.642 63.158 0.00 0.00 40.91 5.24
1378 3679 3.539107 GCCGCCGTACGTTTCTCG 61.539 66.667 15.21 8.97 46.00 4.04
1380 3681 1.866496 CCGCCGTACGTTTCTCGAG 60.866 63.158 15.21 5.93 42.86 4.04
1394 3695 4.657436 TTCTCGAGCCCTTCTTTATCTC 57.343 45.455 7.81 0.00 0.00 2.75
1575 3881 0.815213 CATCCCGACCTCCGTACGTA 60.815 60.000 15.21 0.00 36.31 3.57
1577 3883 1.450312 CCCGACCTCCGTACGTACT 60.450 63.158 22.55 4.09 36.31 2.73
1578 3884 1.432270 CCCGACCTCCGTACGTACTC 61.432 65.000 22.55 12.15 36.31 2.59
1579 3885 0.460987 CCGACCTCCGTACGTACTCT 60.461 60.000 22.55 1.15 36.31 3.24
1580 3886 0.649475 CGACCTCCGTACGTACTCTG 59.351 60.000 22.55 11.46 0.00 3.35
1581 3887 0.376502 GACCTCCGTACGTACTCTGC 59.623 60.000 22.55 4.60 0.00 4.26
1582 3888 1.028868 ACCTCCGTACGTACTCTGCC 61.029 60.000 22.55 0.00 0.00 4.85
1583 3889 1.028330 CCTCCGTACGTACTCTGCCA 61.028 60.000 22.55 0.46 0.00 4.92
1584 3890 0.098376 CTCCGTACGTACTCTGCCAC 59.902 60.000 22.55 0.00 0.00 5.01
1585 3891 1.226211 CCGTACGTACTCTGCCACG 60.226 63.158 22.55 9.99 43.63 4.94
1588 3894 3.042842 TACGTACTCTGCCACGCCG 62.043 63.158 0.00 0.00 41.80 6.46
1590 3896 3.755628 GTACTCTGCCACGCCGGA 61.756 66.667 5.05 0.00 36.56 5.14
1591 3897 2.758327 TACTCTGCCACGCCGGAT 60.758 61.111 5.05 0.00 36.56 4.18
1592 3898 2.782222 TACTCTGCCACGCCGGATC 61.782 63.158 5.05 0.00 36.56 3.36
1594 3900 2.441348 TCTGCCACGCCGGATCTA 60.441 61.111 5.05 0.00 36.56 1.98
1595 3901 1.810606 CTCTGCCACGCCGGATCTAT 61.811 60.000 5.05 0.00 36.56 1.98
1596 3902 1.665916 CTGCCACGCCGGATCTATG 60.666 63.158 5.05 0.00 36.56 2.23
1597 3903 3.044305 GCCACGCCGGATCTATGC 61.044 66.667 5.05 0.00 36.56 3.14
1598 3904 2.737180 CCACGCCGGATCTATGCT 59.263 61.111 5.05 0.00 36.56 3.79
1599 3905 1.964448 CCACGCCGGATCTATGCTA 59.036 57.895 5.05 0.00 36.56 3.49
1600 3906 0.109086 CCACGCCGGATCTATGCTAG 60.109 60.000 5.05 0.00 36.56 3.42
1601 3907 0.598562 CACGCCGGATCTATGCTAGT 59.401 55.000 5.05 0.00 0.00 2.57
1604 3910 2.290134 ACGCCGGATCTATGCTAGTAGA 60.290 50.000 5.05 0.00 35.33 2.59
1606 3912 3.378742 CGCCGGATCTATGCTAGTAGATT 59.621 47.826 5.05 0.00 40.57 2.40
1607 3913 4.575236 CGCCGGATCTATGCTAGTAGATTA 59.425 45.833 5.05 0.00 40.57 1.75
1608 3914 5.066117 CGCCGGATCTATGCTAGTAGATTAA 59.934 44.000 5.05 0.00 40.57 1.40
1610 3916 7.493367 GCCGGATCTATGCTAGTAGATTAAAT 58.507 38.462 5.05 0.00 40.57 1.40
1611 3917 7.982354 GCCGGATCTATGCTAGTAGATTAAATT 59.018 37.037 5.05 0.00 40.57 1.82
1772 4080 3.691118 AGCAATGAACACGCTGAACATAT 59.309 39.130 0.00 0.00 33.91 1.78
1773 4081 4.875536 AGCAATGAACACGCTGAACATATA 59.124 37.500 0.00 0.00 33.91 0.86
1780 4092 6.814146 TGAACACGCTGAACATATAATGTACA 59.186 34.615 0.00 0.00 44.07 2.90
1803 4115 7.001674 ACACCCTGTGTTCATTAATACAAGAA 58.998 34.615 0.00 0.00 45.08 2.52
1817 4129 9.830975 ATTAATACAAGAAGTTTTGGCAGTTTT 57.169 25.926 0.00 0.00 32.32 2.43
1821 4133 9.830975 ATACAAGAAGTTTTGGCAGTTTTATTT 57.169 25.926 0.00 0.00 32.32 1.40
1859 4171 9.962783 ACGTCTTATATTAATGAACAGAGGTAC 57.037 33.333 0.00 0.00 0.00 3.34
1933 4245 3.826157 CAGATGGGTTAGCACTGGAAAAA 59.174 43.478 0.00 0.00 0.00 1.94
1961 4273 2.093764 CAGGTGGACTAAGAGCAGAAGG 60.094 54.545 0.00 0.00 0.00 3.46
1978 4290 1.682257 GGTCTTGCCTGCTTCCTCT 59.318 57.895 0.00 0.00 0.00 3.69
1979 4291 0.037447 GGTCTTGCCTGCTTCCTCTT 59.963 55.000 0.00 0.00 0.00 2.85
1980 4292 1.447945 GTCTTGCCTGCTTCCTCTTC 58.552 55.000 0.00 0.00 0.00 2.87
1981 4293 1.003003 GTCTTGCCTGCTTCCTCTTCT 59.997 52.381 0.00 0.00 0.00 2.85
1982 4294 2.234908 GTCTTGCCTGCTTCCTCTTCTA 59.765 50.000 0.00 0.00 0.00 2.10
2027 4343 2.005451 CTCTGCGTTTGAATGGAGGAG 58.995 52.381 4.90 0.00 34.54 3.69
2028 4344 1.623311 TCTGCGTTTGAATGGAGGAGA 59.377 47.619 4.90 0.00 34.54 3.71
2032 4348 2.096496 GCGTTTGAATGGAGGAGATGTG 59.904 50.000 0.00 0.00 0.00 3.21
2055 4371 2.744202 CCGTTCAGTTTTCCCTGAGATG 59.256 50.000 0.00 0.00 42.16 2.90
2060 4376 2.738846 CAGTTTTCCCTGAGATGTCGTG 59.261 50.000 0.00 0.00 34.23 4.35
2061 4377 2.368875 AGTTTTCCCTGAGATGTCGTGT 59.631 45.455 0.00 0.00 0.00 4.49
2062 4378 3.139077 GTTTTCCCTGAGATGTCGTGTT 58.861 45.455 0.00 0.00 0.00 3.32
2063 4379 2.743636 TTCCCTGAGATGTCGTGTTC 57.256 50.000 0.00 0.00 0.00 3.18
2064 4380 0.526211 TCCCTGAGATGTCGTGTTCG 59.474 55.000 0.00 0.00 38.55 3.95
2065 4381 1.078759 CCCTGAGATGTCGTGTTCGC 61.079 60.000 0.00 0.00 36.96 4.70
2066 4382 1.078759 CCTGAGATGTCGTGTTCGCC 61.079 60.000 0.00 0.00 36.96 5.54
2067 4383 0.388520 CTGAGATGTCGTGTTCGCCA 60.389 55.000 0.00 0.00 36.96 5.69
2068 4384 0.246360 TGAGATGTCGTGTTCGCCAT 59.754 50.000 0.00 0.00 38.35 4.40
2069 4385 1.474879 TGAGATGTCGTGTTCGCCATA 59.525 47.619 0.00 0.00 35.80 2.74
2070 4386 1.852895 GAGATGTCGTGTTCGCCATAC 59.147 52.381 0.00 0.00 35.80 2.39
2071 4387 0.570734 GATGTCGTGTTCGCCATACG 59.429 55.000 0.00 0.00 35.80 3.06
2087 4403 3.693245 CGAATCCTTCGCACCTCG 58.307 61.111 0.00 0.00 46.97 4.63
2088 4404 1.153823 CGAATCCTTCGCACCTCGT 60.154 57.895 0.00 0.00 46.97 4.18
2148 4466 4.203226 TCCATCAACACACTTGCAAGTTA 58.797 39.130 29.23 11.00 37.08 2.24
2151 4469 4.875544 TCAACACACTTGCAAGTTACTC 57.124 40.909 29.23 0.00 37.08 2.59
2153 4471 2.572290 ACACACTTGCAAGTTACTCCC 58.428 47.619 29.23 0.00 37.08 4.30
2154 4472 2.172717 ACACACTTGCAAGTTACTCCCT 59.827 45.455 29.23 2.45 37.08 4.20
2155 4473 2.808543 CACACTTGCAAGTTACTCCCTC 59.191 50.000 29.23 0.00 37.08 4.30
2156 4474 2.224548 ACACTTGCAAGTTACTCCCTCC 60.225 50.000 29.23 0.00 37.08 4.30
2157 4475 1.002087 ACTTGCAAGTTACTCCCTCCG 59.998 52.381 26.36 0.00 35.21 4.63
2158 4476 1.002087 CTTGCAAGTTACTCCCTCCGT 59.998 52.381 18.65 0.00 0.00 4.69
2159 4477 1.927487 TGCAAGTTACTCCCTCCGTA 58.073 50.000 0.00 0.00 0.00 4.02
2160 4478 2.250031 TGCAAGTTACTCCCTCCGTAA 58.750 47.619 0.00 0.00 0.00 3.18
2161 4479 2.633967 TGCAAGTTACTCCCTCCGTAAA 59.366 45.455 0.00 0.00 0.00 2.01
2162 4480 3.259902 GCAAGTTACTCCCTCCGTAAAG 58.740 50.000 0.00 0.00 0.00 1.85
2163 4481 3.056322 GCAAGTTACTCCCTCCGTAAAGA 60.056 47.826 0.00 0.00 0.00 2.52
2164 4482 4.562143 GCAAGTTACTCCCTCCGTAAAGAA 60.562 45.833 0.00 0.00 0.00 2.52
2165 4483 5.544650 CAAGTTACTCCCTCCGTAAAGAAA 58.455 41.667 0.00 0.00 0.00 2.52
2166 4484 6.171213 CAAGTTACTCCCTCCGTAAAGAAAT 58.829 40.000 0.00 0.00 0.00 2.17
2167 4485 6.370186 AGTTACTCCCTCCGTAAAGAAATT 57.630 37.500 0.00 0.00 0.00 1.82
2168 4486 7.486407 AGTTACTCCCTCCGTAAAGAAATTA 57.514 36.000 0.00 0.00 0.00 1.40
2169 4487 7.554211 AGTTACTCCCTCCGTAAAGAAATTAG 58.446 38.462 0.00 0.00 0.00 1.73
2170 4488 7.179872 AGTTACTCCCTCCGTAAAGAAATTAGT 59.820 37.037 0.00 0.00 0.00 2.24
2171 4489 5.731591 ACTCCCTCCGTAAAGAAATTAGTG 58.268 41.667 0.00 0.00 0.00 2.74
2172 4490 5.482878 ACTCCCTCCGTAAAGAAATTAGTGA 59.517 40.000 0.00 0.00 0.00 3.41
2173 4491 6.156429 ACTCCCTCCGTAAAGAAATTAGTGAT 59.844 38.462 0.00 0.00 0.00 3.06
2174 4492 6.579865 TCCCTCCGTAAAGAAATTAGTGATC 58.420 40.000 0.00 0.00 0.00 2.92
2175 4493 6.383147 TCCCTCCGTAAAGAAATTAGTGATCT 59.617 38.462 0.00 0.00 0.00 2.75
2176 4494 7.562454 TCCCTCCGTAAAGAAATTAGTGATCTA 59.438 37.037 0.00 0.00 0.00 1.98
2177 4495 8.202137 CCCTCCGTAAAGAAATTAGTGATCTAA 58.798 37.037 0.00 0.00 39.95 2.10
2178 4496 9.595823 CCTCCGTAAAGAAATTAGTGATCTAAA 57.404 33.333 0.00 0.00 39.23 1.85
2180 4498 9.079833 TCCGTAAAGAAATTAGTGATCTAAACG 57.920 33.333 0.00 0.00 39.23 3.60
2181 4499 7.844653 CCGTAAAGAAATTAGTGATCTAAACGC 59.155 37.037 0.00 0.00 39.23 4.84
2182 4500 8.592998 CGTAAAGAAATTAGTGATCTAAACGCT 58.407 33.333 0.00 0.00 39.23 5.07
2183 4501 9.903185 GTAAAGAAATTAGTGATCTAAACGCTC 57.097 33.333 0.00 0.00 39.23 5.03
2184 4502 8.779354 AAAGAAATTAGTGATCTAAACGCTCT 57.221 30.769 0.00 0.00 39.23 4.09
2185 4503 8.779354 AAGAAATTAGTGATCTAAACGCTCTT 57.221 30.769 0.00 0.00 39.23 2.85
2186 4504 9.871238 AAGAAATTAGTGATCTAAACGCTCTTA 57.129 29.630 0.00 0.00 39.23 2.10
2202 4520 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
2203 4521 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
2204 4522 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
2205 4523 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
2206 4524 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
2212 4530 4.778534 TCTTTACAGAGGGAGTACAACG 57.221 45.455 0.00 0.00 0.00 4.10
2213 4531 3.057033 TCTTTACAGAGGGAGTACAACGC 60.057 47.826 0.00 0.00 0.00 4.84
2214 4532 1.913778 TACAGAGGGAGTACAACGCA 58.086 50.000 0.00 0.00 0.00 5.24
2215 4533 1.045407 ACAGAGGGAGTACAACGCAA 58.955 50.000 0.00 0.00 0.00 4.85
2216 4534 1.414919 ACAGAGGGAGTACAACGCAAA 59.585 47.619 0.00 0.00 0.00 3.68
2217 4535 1.798813 CAGAGGGAGTACAACGCAAAC 59.201 52.381 0.00 0.00 0.00 2.93
2218 4536 1.692519 AGAGGGAGTACAACGCAAACT 59.307 47.619 0.00 0.00 0.00 2.66
2219 4537 2.895404 AGAGGGAGTACAACGCAAACTA 59.105 45.455 0.00 0.00 0.00 2.24
2220 4538 3.056749 AGAGGGAGTACAACGCAAACTAG 60.057 47.826 0.00 0.00 0.00 2.57
2221 4539 2.631545 AGGGAGTACAACGCAAACTAGT 59.368 45.455 0.00 0.00 0.00 2.57
2244 4562 7.550712 AGTCTTTGCTCTGAAGTTTCATTTTT 58.449 30.769 0.00 0.00 36.46 1.94
2285 4604 2.832129 TGTCCTAGAGTACCAGCCTTTG 59.168 50.000 0.00 0.00 0.00 2.77
2340 4659 3.871594 GCATAAAACATCACGAGGCTAGT 59.128 43.478 0.00 0.00 0.00 2.57
2343 4662 1.557099 AACATCACGAGGCTAGTGGA 58.443 50.000 24.51 13.43 39.86 4.02
2417 4736 0.250295 TTCCCAGCGTTCAAGACCAG 60.250 55.000 0.00 0.00 0.00 4.00
2421 4740 1.354040 CAGCGTTCAAGACCAGCTAG 58.646 55.000 0.00 0.00 36.28 3.42
2424 4743 2.159170 AGCGTTCAAGACCAGCTAGATC 60.159 50.000 0.00 0.00 36.28 2.75
2425 4744 2.815478 CGTTCAAGACCAGCTAGATCC 58.185 52.381 0.00 0.00 0.00 3.36
2426 4745 2.428890 CGTTCAAGACCAGCTAGATCCT 59.571 50.000 0.00 0.00 0.00 3.24
2438 4762 0.255890 TAGATCCTTGGGCAGTTGGC 59.744 55.000 0.00 0.00 43.74 4.52
2521 5728 4.701956 TGCAAGTTAGGAGCTTTATTGC 57.298 40.909 10.96 10.96 41.36 3.56
2562 5804 9.965824 AACAATCACGAGAAATACAATCTTTTT 57.034 25.926 0.00 0.00 0.00 1.94
2563 5805 9.398170 ACAATCACGAGAAATACAATCTTTTTG 57.602 29.630 0.00 0.00 0.00 2.44
2564 5806 9.611284 CAATCACGAGAAATACAATCTTTTTGA 57.389 29.630 0.00 0.00 0.00 2.69
2612 5854 7.265599 TGAAGGAGGAAATACAGTTAATCCA 57.734 36.000 0.00 0.00 32.47 3.41
2695 5952 7.715249 TGGCCTCTCAATTATTGACATAAGTAC 59.285 37.037 3.32 0.00 35.46 2.73
2714 5971 4.292784 GCTCTCGCAAAGCTCCTT 57.707 55.556 0.00 0.00 36.80 3.36
2725 5982 4.201920 CGCAAAGCTCCTTTAATTACCTCC 60.202 45.833 0.00 0.00 31.96 4.30
2727 5984 6.120220 GCAAAGCTCCTTTAATTACCTCCTA 58.880 40.000 0.00 0.00 31.96 2.94
2735 5992 7.287810 TCCTTTAATTACCTCCTAGGAAATGC 58.712 38.462 13.77 0.00 37.67 3.56
2761 6018 5.838529 AGTTGCATAAGTTAACAACAACCC 58.161 37.500 23.47 6.66 43.74 4.11
2795 6052 5.698089 TCTCGAGCACAATATGATCAAATCC 59.302 40.000 7.81 0.00 44.41 3.01
2797 6054 5.999600 TCGAGCACAATATGATCAAATCCAT 59.000 36.000 0.00 0.00 44.41 3.41
2798 6055 7.160726 TCGAGCACAATATGATCAAATCCATA 58.839 34.615 0.00 0.00 44.41 2.74
2799 6056 7.332678 TCGAGCACAATATGATCAAATCCATAG 59.667 37.037 0.00 0.00 44.41 2.23
2800 6057 7.332678 CGAGCACAATATGATCAAATCCATAGA 59.667 37.037 0.00 0.00 44.41 1.98
2801 6058 9.175312 GAGCACAATATGATCAAATCCATAGAT 57.825 33.333 0.00 0.00 43.60 1.98
2802 6059 8.957466 AGCACAATATGATCAAATCCATAGATG 58.043 33.333 0.00 0.00 31.29 2.90
2840 6098 8.108551 AGCGTATACCCTCTACAAATAAGTAG 57.891 38.462 0.00 0.00 42.21 2.57
2861 6122 9.444600 AAGTAGATATGCTTAAAGGAAAACGAA 57.555 29.630 0.00 0.00 0.00 3.85
2876 6137 9.908152 AAGGAAAACGAATTTATTTCACTAAGG 57.092 29.630 11.31 0.00 35.32 2.69
2881 6142 9.893305 AAACGAATTTATTTCACTAAGGACTTG 57.107 29.630 0.00 0.00 33.66 3.16
2882 6143 8.040716 ACGAATTTATTTCACTAAGGACTTGG 57.959 34.615 0.00 0.00 33.66 3.61
2889 6150 4.901197 TCACTAAGGACTTGGCATTGTA 57.099 40.909 0.00 0.00 0.00 2.41
2890 6151 5.435686 TCACTAAGGACTTGGCATTGTAT 57.564 39.130 0.00 0.00 0.00 2.29
2895 6156 3.555966 AGGACTTGGCATTGTATAAGGC 58.444 45.455 0.00 0.00 42.54 4.35
2899 6160 5.182001 GGACTTGGCATTGTATAAGGCTATG 59.818 44.000 8.74 7.54 42.83 2.23
2927 6188 8.888419 ACTCCCATGATAGTTGATGAATAGATT 58.112 33.333 0.00 0.00 0.00 2.40
2930 6191 9.682465 CCCATGATAGTTGATGAATAGATTGAT 57.318 33.333 0.00 0.00 0.00 2.57
2937 6198 8.503428 AGTTGATGAATAGATTGATACTCCCT 57.497 34.615 0.00 0.00 0.00 4.20
2938 6199 8.943085 AGTTGATGAATAGATTGATACTCCCTT 58.057 33.333 0.00 0.00 0.00 3.95
2939 6200 9.213799 GTTGATGAATAGATTGATACTCCCTTC 57.786 37.037 0.00 0.00 0.00 3.46
2940 6201 7.606349 TGATGAATAGATTGATACTCCCTTCG 58.394 38.462 0.00 0.00 0.00 3.79
2941 6202 6.978674 TGAATAGATTGATACTCCCTTCGT 57.021 37.500 0.00 0.00 0.00 3.85
2942 6203 6.982852 TGAATAGATTGATACTCCCTTCGTC 58.017 40.000 0.00 0.00 0.00 4.20
2943 6204 5.986501 ATAGATTGATACTCCCTTCGTCC 57.013 43.478 0.00 0.00 0.00 4.79
2944 6205 2.966516 AGATTGATACTCCCTTCGTCCC 59.033 50.000 0.00 0.00 0.00 4.46
2945 6206 2.241281 TTGATACTCCCTTCGTCCCA 57.759 50.000 0.00 0.00 0.00 4.37
2946 6207 2.471815 TGATACTCCCTTCGTCCCAT 57.528 50.000 0.00 0.00 0.00 4.00
2947 6208 3.605726 TGATACTCCCTTCGTCCCATA 57.394 47.619 0.00 0.00 0.00 2.74
2948 6209 3.918566 TGATACTCCCTTCGTCCCATAA 58.081 45.455 0.00 0.00 0.00 1.90
2949 6210 4.489737 TGATACTCCCTTCGTCCCATAAT 58.510 43.478 0.00 0.00 0.00 1.28
2950 6211 4.283467 TGATACTCCCTTCGTCCCATAATG 59.717 45.833 0.00 0.00 0.00 1.90
2951 6212 2.478292 ACTCCCTTCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
2952 6213 3.649843 ACTCCCTTCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
2953 6214 4.035112 ACTCCCTTCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
2954 6215 4.472108 ACTCCCTTCGTCCCATAATGTAAA 59.528 41.667 0.00 0.00 0.00 2.01
2955 6216 5.045432 ACTCCCTTCGTCCCATAATGTAAAA 60.045 40.000 0.00 0.00 0.00 1.52
2956 6217 5.187687 TCCCTTCGTCCCATAATGTAAAAC 58.812 41.667 0.00 0.00 0.00 2.43
2957 6218 4.034742 CCCTTCGTCCCATAATGTAAAACG 59.965 45.833 0.00 0.00 0.00 3.60
2958 6219 4.632688 CCTTCGTCCCATAATGTAAAACGT 59.367 41.667 0.00 0.00 0.00 3.99
2959 6220 5.122711 CCTTCGTCCCATAATGTAAAACGTT 59.877 40.000 0.00 0.00 0.00 3.99
2960 6221 6.348704 CCTTCGTCCCATAATGTAAAACGTTT 60.349 38.462 7.96 7.96 0.00 3.60
2961 6222 6.557291 TCGTCCCATAATGTAAAACGTTTT 57.443 33.333 27.65 27.65 0.00 2.43
2962 6223 6.968250 TCGTCCCATAATGTAAAACGTTTTT 58.032 32.000 29.42 15.16 0.00 1.94
2986 6247 7.534085 TTCACACTACACTACTGTGAAAAAG 57.466 36.000 9.44 0.00 46.75 2.27
2987 6248 6.869695 TCACACTACACTACTGTGAAAAAGA 58.130 36.000 3.03 0.00 46.55 2.52
2988 6249 6.978659 TCACACTACACTACTGTGAAAAAGAG 59.021 38.462 3.03 0.00 46.55 2.85
2989 6250 6.201044 CACACTACACTACTGTGAAAAAGAGG 59.799 42.308 3.03 0.00 46.55 3.69
2990 6251 5.177696 CACTACACTACTGTGAAAAAGAGGC 59.822 44.000 3.03 0.00 46.55 4.70
2991 6252 4.423625 ACACTACTGTGAAAAAGAGGCT 57.576 40.909 3.03 0.00 46.55 4.58
2992 6253 5.546621 ACACTACTGTGAAAAAGAGGCTA 57.453 39.130 3.03 0.00 46.55 3.93
2993 6254 5.542779 ACACTACTGTGAAAAAGAGGCTAG 58.457 41.667 3.03 0.00 46.55 3.42
2994 6255 5.304614 ACACTACTGTGAAAAAGAGGCTAGA 59.695 40.000 3.03 0.00 46.55 2.43
2995 6256 6.183360 ACACTACTGTGAAAAAGAGGCTAGAA 60.183 38.462 3.03 0.00 46.55 2.10
2996 6257 6.367422 CACTACTGTGAAAAAGAGGCTAGAAG 59.633 42.308 0.00 0.00 46.55 2.85
2997 6258 4.646572 ACTGTGAAAAAGAGGCTAGAAGG 58.353 43.478 0.00 0.00 0.00 3.46
2998 6259 4.006319 CTGTGAAAAAGAGGCTAGAAGGG 58.994 47.826 0.00 0.00 0.00 3.95
2999 6260 3.650942 TGTGAAAAAGAGGCTAGAAGGGA 59.349 43.478 0.00 0.00 0.00 4.20
3000 6261 4.289672 TGTGAAAAAGAGGCTAGAAGGGAT 59.710 41.667 0.00 0.00 0.00 3.85
3001 6262 4.878971 GTGAAAAAGAGGCTAGAAGGGATC 59.121 45.833 0.00 0.00 0.00 3.36
3002 6263 3.828875 AAAAGAGGCTAGAAGGGATCG 57.171 47.619 0.00 0.00 0.00 3.69
3003 6264 2.463047 AAGAGGCTAGAAGGGATCGT 57.537 50.000 0.00 0.00 0.00 3.73
3004 6265 1.698506 AGAGGCTAGAAGGGATCGTG 58.301 55.000 0.00 0.00 0.00 4.35
3005 6266 1.215673 AGAGGCTAGAAGGGATCGTGA 59.784 52.381 0.00 0.00 0.00 4.35
3006 6267 2.158385 AGAGGCTAGAAGGGATCGTGAT 60.158 50.000 0.00 0.00 0.00 3.06
3007 6268 2.230266 GAGGCTAGAAGGGATCGTGATC 59.770 54.545 0.00 1.11 37.11 2.92
3008 6269 2.158385 AGGCTAGAAGGGATCGTGATCT 60.158 50.000 9.54 0.00 37.92 2.75
3009 6270 3.074687 AGGCTAGAAGGGATCGTGATCTA 59.925 47.826 9.54 0.00 37.92 1.98
3010 6271 3.442273 GGCTAGAAGGGATCGTGATCTAG 59.558 52.174 9.54 14.36 41.49 2.43
3011 6272 4.695217 CTAGAAGGGATCGTGATCTAGC 57.305 50.000 9.54 0.00 37.92 3.42
3012 6273 2.950781 AGAAGGGATCGTGATCTAGCA 58.049 47.619 9.54 0.00 37.92 3.49
3013 6274 2.625790 AGAAGGGATCGTGATCTAGCAC 59.374 50.000 9.54 0.00 37.92 4.40
3014 6275 1.333177 AGGGATCGTGATCTAGCACC 58.667 55.000 9.54 2.54 37.92 5.01
3015 6276 0.039074 GGGATCGTGATCTAGCACCG 60.039 60.000 9.54 0.00 37.92 4.94
3016 6277 0.664767 GGATCGTGATCTAGCACCGC 60.665 60.000 9.54 0.00 37.92 5.68
3017 6278 0.664767 GATCGTGATCTAGCACCGCC 60.665 60.000 2.60 0.00 35.37 6.13
3018 6279 1.391933 ATCGTGATCTAGCACCGCCA 61.392 55.000 0.00 0.00 35.37 5.69
3019 6280 1.878522 CGTGATCTAGCACCGCCAC 60.879 63.158 0.00 0.00 35.37 5.01
3020 6281 1.521681 GTGATCTAGCACCGCCACC 60.522 63.158 0.00 0.00 32.68 4.61
3021 6282 1.685765 TGATCTAGCACCGCCACCT 60.686 57.895 0.00 0.00 0.00 4.00
3022 6283 1.068250 GATCTAGCACCGCCACCTC 59.932 63.158 0.00 0.00 0.00 3.85
3023 6284 1.676678 GATCTAGCACCGCCACCTCA 61.677 60.000 0.00 0.00 0.00 3.86
3024 6285 1.961180 ATCTAGCACCGCCACCTCAC 61.961 60.000 0.00 0.00 0.00 3.51
3025 6286 3.665675 CTAGCACCGCCACCTCACC 62.666 68.421 0.00 0.00 0.00 4.02
3033 6294 4.065281 CCACCTCACCCCGACGAC 62.065 72.222 0.00 0.00 0.00 4.34
3034 6295 2.989824 CACCTCACCCCGACGACT 60.990 66.667 0.00 0.00 0.00 4.18
3035 6296 2.675772 ACCTCACCCCGACGACTC 60.676 66.667 0.00 0.00 0.00 3.36
3036 6297 3.450115 CCTCACCCCGACGACTCC 61.450 72.222 0.00 0.00 0.00 3.85
3037 6298 3.450115 CTCACCCCGACGACTCCC 61.450 72.222 0.00 0.00 0.00 4.30
3040 6301 4.755507 ACCCCGACGACTCCCCTC 62.756 72.222 0.00 0.00 0.00 4.30
3045 6306 4.077180 GACGACTCCCCTCCCCCT 62.077 72.222 0.00 0.00 0.00 4.79
3046 6307 4.077180 ACGACTCCCCTCCCCCTC 62.077 72.222 0.00 0.00 0.00 4.30
3112 6373 4.814041 AGCCCCTCCCTGCTCCTC 62.814 72.222 0.00 0.00 30.33 3.71
3114 6375 4.421554 CCCCTCCCTGCTCCTCCA 62.422 72.222 0.00 0.00 0.00 3.86
3115 6376 2.040043 CCCTCCCTGCTCCTCCAT 60.040 66.667 0.00 0.00 0.00 3.41
3116 6377 2.146061 CCCTCCCTGCTCCTCCATC 61.146 68.421 0.00 0.00 0.00 3.51
3117 6378 2.146061 CCTCCCTGCTCCTCCATCC 61.146 68.421 0.00 0.00 0.00 3.51
3118 6379 1.383664 CTCCCTGCTCCTCCATCCA 60.384 63.158 0.00 0.00 0.00 3.41
3119 6380 1.690633 TCCCTGCTCCTCCATCCAC 60.691 63.158 0.00 0.00 0.00 4.02
3120 6381 1.997311 CCCTGCTCCTCCATCCACA 60.997 63.158 0.00 0.00 0.00 4.17
3121 6382 1.525923 CCTGCTCCTCCATCCACAG 59.474 63.158 0.00 0.00 0.00 3.66
3122 6383 1.153208 CTGCTCCTCCATCCACAGC 60.153 63.158 0.00 0.00 0.00 4.40
3123 6384 2.191641 GCTCCTCCATCCACAGCC 59.808 66.667 0.00 0.00 0.00 4.85
3124 6385 2.503061 CTCCTCCATCCACAGCCG 59.497 66.667 0.00 0.00 0.00 5.52
3125 6386 3.746949 CTCCTCCATCCACAGCCGC 62.747 68.421 0.00 0.00 0.00 6.53
3126 6387 4.864334 CCTCCATCCACAGCCGCC 62.864 72.222 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.365293 GGTCAGTTGGATTTGCAAAGGT 59.635 45.455 18.19 0.87 0.00 3.50
41 42 1.117142 AACGAGGAAACGAGGGGTCA 61.117 55.000 0.00 0.00 37.03 4.02
61 62 4.023980 CCAGGTGTGTATCAACTCTCCTA 58.976 47.826 2.08 0.00 42.94 2.94
62 63 2.834549 CCAGGTGTGTATCAACTCTCCT 59.165 50.000 0.00 0.00 42.94 3.69
69 70 2.224992 ACCATTGCCAGGTGTGTATCAA 60.225 45.455 0.00 0.00 38.13 2.57
70 71 1.354031 ACCATTGCCAGGTGTGTATCA 59.646 47.619 0.00 0.00 38.13 2.15
71 72 2.128771 ACCATTGCCAGGTGTGTATC 57.871 50.000 0.00 0.00 38.13 2.24
112 113 9.384764 TCCATCTACTACGATGAAGATACATAG 57.615 37.037 2.57 0.00 42.63 2.23
128 137 3.708451 TGAACAGGTGCTCCATCTACTA 58.292 45.455 7.70 0.00 35.89 1.82
129 138 2.540383 TGAACAGGTGCTCCATCTACT 58.460 47.619 7.70 0.00 35.89 2.57
131 140 2.637382 TGTTGAACAGGTGCTCCATCTA 59.363 45.455 7.70 0.00 35.89 1.98
136 145 1.336240 GCATTGTTGAACAGGTGCTCC 60.336 52.381 22.25 0.00 38.04 4.70
139 148 2.222007 TTGCATTGTTGAACAGGTGC 57.778 45.000 22.55 22.55 40.01 5.01
143 152 9.142515 ACACATAAATATTGCATTGTTGAACAG 57.857 29.630 0.00 0.00 0.00 3.16
176 185 6.770286 AGCTATTCCTTCCTTTCATGGATA 57.230 37.500 0.00 0.00 35.83 2.59
182 191 3.356290 GCCAAGCTATTCCTTCCTTTCA 58.644 45.455 0.00 0.00 0.00 2.69
223 232 2.622942 TGCAGGTCTAAGCAAAAGGTTG 59.377 45.455 0.00 0.00 37.90 3.77
236 245 1.910722 CTATGGCAGGTGCAGGTCT 59.089 57.895 4.01 0.00 44.36 3.85
240 249 0.877649 CTACGCTATGGCAGGTGCAG 60.878 60.000 0.74 0.00 44.36 4.41
272 281 0.250989 ACGATTGGCGGGGAAAAGAA 60.251 50.000 0.00 0.00 46.49 2.52
273 282 0.675522 GACGATTGGCGGGGAAAAGA 60.676 55.000 0.00 0.00 46.49 2.52
275 284 0.958382 CTGACGATTGGCGGGGAAAA 60.958 55.000 0.00 0.00 46.49 2.29
276 285 1.376683 CTGACGATTGGCGGGGAAA 60.377 57.895 0.00 0.00 46.49 3.13
277 286 1.832719 TTCTGACGATTGGCGGGGAA 61.833 55.000 0.00 0.00 46.49 3.97
278 287 1.622607 ATTCTGACGATTGGCGGGGA 61.623 55.000 0.00 0.00 46.49 4.81
279 288 0.748005 AATTCTGACGATTGGCGGGG 60.748 55.000 0.00 0.00 46.49 5.73
280 289 0.657840 GAATTCTGACGATTGGCGGG 59.342 55.000 0.00 0.00 46.49 6.13
309 318 4.405756 AGAGGGAAGACTAGTTGGAAGA 57.594 45.455 0.00 0.00 0.00 2.87
312 321 2.567615 GCAAGAGGGAAGACTAGTTGGA 59.432 50.000 0.00 0.00 0.00 3.53
379 388 0.901580 AGCAACCAAAGGCCATCAGG 60.902 55.000 5.01 3.40 38.23 3.86
381 390 2.170166 CTTAGCAACCAAAGGCCATCA 58.830 47.619 5.01 0.00 0.00 3.07
403 412 4.141620 ACAGGCCAACTAGATGACTTATGG 60.142 45.833 5.01 0.00 0.00 2.74
406 415 5.269991 AGTACAGGCCAACTAGATGACTTA 58.730 41.667 5.01 0.00 0.00 2.24
410 419 3.708451 TGAGTACAGGCCAACTAGATGA 58.292 45.455 5.01 0.00 0.00 2.92
430 439 5.468746 TGAGGAAATTGTAAAGACTCCGTTG 59.531 40.000 0.00 0.00 29.74 4.10
431 440 5.617252 TGAGGAAATTGTAAAGACTCCGTT 58.383 37.500 0.00 0.00 29.74 4.44
432 441 5.223449 TGAGGAAATTGTAAAGACTCCGT 57.777 39.130 0.00 0.00 29.74 4.69
434 443 6.877611 TGTTGAGGAAATTGTAAAGACTCC 57.122 37.500 0.00 0.00 0.00 3.85
443 452 4.524328 GTCAAGGGATGTTGAGGAAATTGT 59.476 41.667 0.00 0.00 37.12 2.71
457 466 4.593956 GTCATTTCTTCCTGTCAAGGGAT 58.406 43.478 0.00 0.00 44.62 3.85
461 470 2.807967 TGCGTCATTTCTTCCTGTCAAG 59.192 45.455 0.00 0.00 0.00 3.02
464 473 2.808543 AGTTGCGTCATTTCTTCCTGTC 59.191 45.455 0.00 0.00 0.00 3.51
474 483 4.843984 CGAACGAATAAAAGTTGCGTCATT 59.156 37.500 0.00 0.00 33.66 2.57
477 486 3.831426 GTCGAACGAATAAAAGTTGCGTC 59.169 43.478 0.00 0.00 33.66 5.19
483 492 3.492011 AGCAACGTCGAACGAATAAAAGT 59.508 39.130 13.06 0.00 46.05 2.66
489 498 3.247442 TCATTAGCAACGTCGAACGAAT 58.753 40.909 13.06 1.45 46.05 3.34
493 502 2.348666 AGCATCATTAGCAACGTCGAAC 59.651 45.455 0.00 0.00 0.00 3.95
496 505 2.595188 CGAAGCATCATTAGCAACGTCG 60.595 50.000 0.00 0.00 0.00 5.12
508 517 4.051237 CGAGTGGATTTATCGAAGCATCA 58.949 43.478 0.00 0.00 38.72 3.07
530 539 7.934855 ATGAACCTGATCTGGCAATATTATC 57.065 36.000 17.94 5.32 0.00 1.75
532 541 7.744733 TGTATGAACCTGATCTGGCAATATTA 58.255 34.615 17.94 5.51 0.00 0.98
536 545 4.508551 TGTATGAACCTGATCTGGCAAT 57.491 40.909 17.94 11.38 0.00 3.56
540 549 2.804527 CGCATGTATGAACCTGATCTGG 59.195 50.000 16.56 16.56 0.00 3.86
572 581 5.627499 TCGGATTCCAATGAAAAGTTCAG 57.373 39.130 3.09 0.00 43.98 3.02
593 602 5.399858 TCACTACTGCTTGTAACGAGAATC 58.600 41.667 0.00 0.00 0.00 2.52
599 608 3.786576 CGATCTCACTACTGCTTGTAACG 59.213 47.826 0.00 0.00 0.00 3.18
618 627 6.127054 TGTGAAGAAGAATAGGAATGGACGAT 60.127 38.462 0.00 0.00 0.00 3.73
624 633 5.067023 GGGCTTGTGAAGAAGAATAGGAATG 59.933 44.000 0.00 0.00 0.00 2.67
625 634 5.044550 AGGGCTTGTGAAGAAGAATAGGAAT 60.045 40.000 0.00 0.00 0.00 3.01
637 646 2.260844 TGAAGTCAGGGCTTGTGAAG 57.739 50.000 0.00 0.00 0.00 3.02
666 859 2.022754 GCAGAGCAGCCATCAAGGAAT 61.023 52.381 0.00 0.00 41.22 3.01
672 865 1.453197 CCATGCAGAGCAGCCATCA 60.453 57.895 0.00 0.00 43.65 3.07
677 870 1.313812 AAGCTTCCATGCAGAGCAGC 61.314 55.000 14.12 9.01 43.65 5.25
679 872 0.037160 TCAAGCTTCCATGCAGAGCA 59.963 50.000 14.12 0.00 44.86 4.26
688 881 2.108075 TCCCTCATGTTTCAAGCTTCCA 59.892 45.455 0.00 0.00 0.00 3.53
754 1247 3.665745 AAAAAGCAATGCTCCGTCATT 57.334 38.095 8.71 0.00 38.25 2.57
793 1315 3.316308 GCTCCAATACCGAATTCAGCAAT 59.684 43.478 6.22 0.00 33.39 3.56
803 1652 0.988832 AAACTGGGCTCCAATACCGA 59.011 50.000 0.00 0.00 30.80 4.69
829 1678 3.433740 GGCTCAAATACTCCCCTAACAGG 60.434 52.174 0.00 0.00 34.30 4.00
830 1679 3.433740 GGGCTCAAATACTCCCCTAACAG 60.434 52.174 0.00 0.00 32.60 3.16
831 1680 2.508300 GGGCTCAAATACTCCCCTAACA 59.492 50.000 0.00 0.00 32.60 2.41
833 1682 2.777692 CTGGGCTCAAATACTCCCCTAA 59.222 50.000 0.00 0.00 37.97 2.69
922 3215 4.082523 TTGCCGGCTTCTCCTCCG 62.083 66.667 29.70 0.00 44.89 4.63
978 3271 1.824760 TGTGTGTGGAGTCGACCGA 60.825 57.895 13.01 0.00 0.00 4.69
989 3283 2.403186 GGCGTGTGTGTGTGTGTG 59.597 61.111 0.00 0.00 0.00 3.82
990 3284 3.192230 CGGCGTGTGTGTGTGTGT 61.192 61.111 0.00 0.00 0.00 3.72
991 3285 4.589700 GCGGCGTGTGTGTGTGTG 62.590 66.667 9.37 0.00 0.00 3.82
1330 3631 4.570663 GCGGACGCGAGCAGGTAT 62.571 66.667 15.93 0.00 0.00 2.73
1378 3679 1.422024 GGGGGAGATAAAGAAGGGCTC 59.578 57.143 0.00 0.00 0.00 4.70
1575 3881 4.148825 GATCCGGCGTGGCAGAGT 62.149 66.667 6.01 0.00 37.80 3.24
1577 3883 1.832608 ATAGATCCGGCGTGGCAGA 60.833 57.895 6.01 0.00 37.80 4.26
1578 3884 1.665916 CATAGATCCGGCGTGGCAG 60.666 63.158 6.01 0.00 37.80 4.85
1579 3885 2.421314 CATAGATCCGGCGTGGCA 59.579 61.111 6.01 0.00 37.80 4.92
1580 3886 2.154798 TAGCATAGATCCGGCGTGGC 62.155 60.000 6.01 0.00 37.80 5.01
1581 3887 0.109086 CTAGCATAGATCCGGCGTGG 60.109 60.000 6.01 0.00 42.77 4.94
1582 3888 0.598562 ACTAGCATAGATCCGGCGTG 59.401 55.000 6.01 0.00 42.77 5.34
1583 3889 2.085320 CTACTAGCATAGATCCGGCGT 58.915 52.381 6.01 0.00 42.77 5.68
1584 3890 2.357075 TCTACTAGCATAGATCCGGCG 58.643 52.381 0.00 0.00 42.77 6.46
1585 3891 4.993029 AATCTACTAGCATAGATCCGGC 57.007 45.455 0.00 0.00 42.77 6.13
1606 3912 8.293157 TCGATCAACAACTGCAATACAAATTTA 58.707 29.630 0.00 0.00 0.00 1.40
1607 3913 7.144661 TCGATCAACAACTGCAATACAAATTT 58.855 30.769 0.00 0.00 0.00 1.82
1608 3914 6.676950 TCGATCAACAACTGCAATACAAATT 58.323 32.000 0.00 0.00 0.00 1.82
1610 3916 5.238432 ACTCGATCAACAACTGCAATACAAA 59.762 36.000 0.00 0.00 0.00 2.83
1611 3917 4.754618 ACTCGATCAACAACTGCAATACAA 59.245 37.500 0.00 0.00 0.00 2.41
1613 3919 4.928661 ACTCGATCAACAACTGCAATAC 57.071 40.909 0.00 0.00 0.00 1.89
1614 3920 4.994217 TGAACTCGATCAACAACTGCAATA 59.006 37.500 0.00 0.00 0.00 1.90
1615 3921 3.814842 TGAACTCGATCAACAACTGCAAT 59.185 39.130 0.00 0.00 0.00 3.56
1650 3956 2.040178 GTACCACAGATACCCCTGGAG 58.960 57.143 0.00 0.00 38.44 3.86
1700 4007 3.385384 CTGCGGTCCTGCTCCTCA 61.385 66.667 7.14 0.00 35.36 3.86
1772 4080 9.386010 GTATTAATGAACACAGGGTGTACATTA 57.614 33.333 0.00 4.03 46.79 1.90
1773 4081 7.885922 TGTATTAATGAACACAGGGTGTACATT 59.114 33.333 0.00 4.87 46.79 2.71
1780 4092 7.231467 ACTTCTTGTATTAATGAACACAGGGT 58.769 34.615 0.00 0.00 0.00 4.34
1933 4245 0.322975 CTTAGTCCACCTGCTGCTGT 59.677 55.000 0.00 0.00 0.00 4.40
1961 4273 1.003003 AGAAGAGGAAGCAGGCAAGAC 59.997 52.381 0.00 0.00 0.00 3.01
1973 4285 2.820178 TGCTCCATGTGTAGAAGAGGA 58.180 47.619 0.00 0.00 0.00 3.71
1978 4290 2.279741 GCGAATGCTCCATGTGTAGAA 58.720 47.619 0.00 0.00 38.39 2.10
1979 4291 1.473257 GGCGAATGCTCCATGTGTAGA 60.473 52.381 0.00 0.00 42.25 2.59
1980 4292 0.940126 GGCGAATGCTCCATGTGTAG 59.060 55.000 0.00 0.00 42.25 2.74
1981 4293 0.809636 CGGCGAATGCTCCATGTGTA 60.810 55.000 0.00 0.00 42.25 2.90
1982 4294 2.108514 CGGCGAATGCTCCATGTGT 61.109 57.895 0.00 0.00 42.25 3.72
2027 4343 2.225727 GGGAAAACTGAACGGACACATC 59.774 50.000 0.00 0.00 0.00 3.06
2028 4344 2.158667 AGGGAAAACTGAACGGACACAT 60.159 45.455 0.00 0.00 0.00 3.21
2032 4348 2.143925 CTCAGGGAAAACTGAACGGAC 58.856 52.381 0.00 0.00 46.05 4.79
2071 4387 0.721718 CAACGAGGTGCGAAGGATTC 59.278 55.000 0.00 0.00 44.57 2.52
2072 4388 0.034896 ACAACGAGGTGCGAAGGATT 59.965 50.000 0.00 0.00 44.57 3.01
2073 4389 0.670546 CACAACGAGGTGCGAAGGAT 60.671 55.000 0.00 0.00 44.57 3.24
2074 4390 1.300620 CACAACGAGGTGCGAAGGA 60.301 57.895 0.00 0.00 44.57 3.36
2075 4391 1.284982 CTCACAACGAGGTGCGAAGG 61.285 60.000 6.38 0.00 44.57 3.46
2076 4392 0.597637 ACTCACAACGAGGTGCGAAG 60.598 55.000 7.88 3.57 46.98 3.79
2077 4393 0.874175 CACTCACAACGAGGTGCGAA 60.874 55.000 7.88 0.00 46.98 4.70
2078 4394 1.299850 CACTCACAACGAGGTGCGA 60.300 57.895 7.88 0.00 46.98 5.10
2079 4395 1.591594 ACACTCACAACGAGGTGCG 60.592 57.895 6.38 3.60 46.98 5.34
2080 4396 0.810031 ACACACTCACAACGAGGTGC 60.810 55.000 6.38 0.00 46.98 5.01
2081 4397 2.502213 TACACACTCACAACGAGGTG 57.498 50.000 0.00 0.00 46.98 4.00
2082 4398 4.461431 TCATATACACACTCACAACGAGGT 59.539 41.667 0.00 0.00 46.98 3.85
2083 4399 4.993905 TCATATACACACTCACAACGAGG 58.006 43.478 0.00 0.00 46.98 4.63
2085 4401 5.407502 CCTTCATATACACACTCACAACGA 58.592 41.667 0.00 0.00 0.00 3.85
2086 4402 4.032900 GCCTTCATATACACACTCACAACG 59.967 45.833 0.00 0.00 0.00 4.10
2087 4403 5.178797 AGCCTTCATATACACACTCACAAC 58.821 41.667 0.00 0.00 0.00 3.32
2088 4404 5.046663 TGAGCCTTCATATACACACTCACAA 60.047 40.000 0.00 0.00 0.00 3.33
2148 4466 5.482878 TCACTAATTTCTTTACGGAGGGAGT 59.517 40.000 0.00 0.00 0.00 3.85
2151 4469 6.583562 AGATCACTAATTTCTTTACGGAGGG 58.416 40.000 0.00 0.00 0.00 4.30
2154 4472 9.079833 CGTTTAGATCACTAATTTCTTTACGGA 57.920 33.333 0.00 0.00 38.23 4.69
2155 4473 7.844653 GCGTTTAGATCACTAATTTCTTTACGG 59.155 37.037 0.00 0.00 38.23 4.02
2156 4474 8.592998 AGCGTTTAGATCACTAATTTCTTTACG 58.407 33.333 0.00 0.00 38.23 3.18
2157 4475 9.903185 GAGCGTTTAGATCACTAATTTCTTTAC 57.097 33.333 0.00 0.00 38.23 2.01
2158 4476 9.871238 AGAGCGTTTAGATCACTAATTTCTTTA 57.129 29.630 0.00 0.00 38.23 1.85
2159 4477 8.779354 AGAGCGTTTAGATCACTAATTTCTTT 57.221 30.769 0.00 0.00 38.23 2.52
2160 4478 8.779354 AAGAGCGTTTAGATCACTAATTTCTT 57.221 30.769 0.00 0.00 38.23 2.52
2176 4494 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
2177 4495 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
2178 4496 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
2179 4497 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
2180 4498 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2186 4504 7.980099 CGTTGTACTCCCTCTGTAAAGAAATAT 59.020 37.037 0.00 0.00 0.00 1.28
2187 4505 7.318141 CGTTGTACTCCCTCTGTAAAGAAATA 58.682 38.462 0.00 0.00 0.00 1.40
2188 4506 6.164176 CGTTGTACTCCCTCTGTAAAGAAAT 58.836 40.000 0.00 0.00 0.00 2.17
2189 4507 5.535333 CGTTGTACTCCCTCTGTAAAGAAA 58.465 41.667 0.00 0.00 0.00 2.52
2190 4508 4.560108 GCGTTGTACTCCCTCTGTAAAGAA 60.560 45.833 0.00 0.00 0.00 2.52
2191 4509 3.057033 GCGTTGTACTCCCTCTGTAAAGA 60.057 47.826 0.00 0.00 0.00 2.52
2192 4510 3.251571 GCGTTGTACTCCCTCTGTAAAG 58.748 50.000 0.00 0.00 0.00 1.85
2193 4511 2.629137 TGCGTTGTACTCCCTCTGTAAA 59.371 45.455 0.00 0.00 0.00 2.01
2194 4512 2.241160 TGCGTTGTACTCCCTCTGTAA 58.759 47.619 0.00 0.00 0.00 2.41
2195 4513 1.913778 TGCGTTGTACTCCCTCTGTA 58.086 50.000 0.00 0.00 0.00 2.74
2196 4514 1.045407 TTGCGTTGTACTCCCTCTGT 58.955 50.000 0.00 0.00 0.00 3.41
2197 4515 1.798813 GTTTGCGTTGTACTCCCTCTG 59.201 52.381 0.00 0.00 0.00 3.35
2198 4516 1.692519 AGTTTGCGTTGTACTCCCTCT 59.307 47.619 0.00 0.00 0.00 3.69
2199 4517 2.165319 AGTTTGCGTTGTACTCCCTC 57.835 50.000 0.00 0.00 0.00 4.30
2200 4518 2.631545 ACTAGTTTGCGTTGTACTCCCT 59.368 45.455 0.00 0.00 0.00 4.20
2201 4519 2.991866 GACTAGTTTGCGTTGTACTCCC 59.008 50.000 0.00 0.00 0.00 4.30
2202 4520 3.910648 AGACTAGTTTGCGTTGTACTCC 58.089 45.455 0.00 0.00 0.00 3.85
2203 4521 5.667175 CAAAGACTAGTTTGCGTTGTACTC 58.333 41.667 0.00 0.00 30.94 2.59
2204 4522 5.652744 CAAAGACTAGTTTGCGTTGTACT 57.347 39.130 0.00 0.00 30.94 2.73
2213 4531 6.610741 AACTTCAGAGCAAAGACTAGTTTG 57.389 37.500 0.00 0.00 39.92 2.93
2214 4532 6.823689 TGAAACTTCAGAGCAAAGACTAGTTT 59.176 34.615 0.00 0.00 37.31 2.66
2215 4533 6.349300 TGAAACTTCAGAGCAAAGACTAGTT 58.651 36.000 0.00 0.00 32.50 2.24
2216 4534 5.918608 TGAAACTTCAGAGCAAAGACTAGT 58.081 37.500 0.00 0.00 32.50 2.57
2217 4535 7.432350 AATGAAACTTCAGAGCAAAGACTAG 57.568 36.000 0.00 0.00 41.08 2.57
2218 4536 7.807977 AAATGAAACTTCAGAGCAAAGACTA 57.192 32.000 0.00 0.00 41.08 2.59
2219 4537 6.705863 AAATGAAACTTCAGAGCAAAGACT 57.294 33.333 0.00 0.00 41.08 3.24
2220 4538 7.761651 AAAAATGAAACTTCAGAGCAAAGAC 57.238 32.000 0.00 0.00 41.08 3.01
2244 4562 6.938030 AGGACAAGGACGATTACATGTTTAAA 59.062 34.615 2.30 0.00 0.00 1.52
2247 4565 4.906618 AGGACAAGGACGATTACATGTTT 58.093 39.130 2.30 0.00 0.00 2.83
2262 4580 2.741145 AGGCTGGTACTCTAGGACAAG 58.259 52.381 0.00 0.00 0.00 3.16
2267 4585 3.600388 CAACAAAGGCTGGTACTCTAGG 58.400 50.000 0.00 0.00 0.00 3.02
2285 4604 3.369546 ACATTAAGCACAACCAGCAAC 57.630 42.857 0.00 0.00 0.00 4.17
2340 4659 7.760794 CAGCATAGCAACAAATCTAATTTTCCA 59.239 33.333 0.00 0.00 0.00 3.53
2343 4662 9.880157 ATTCAGCATAGCAACAAATCTAATTTT 57.120 25.926 0.00 0.00 0.00 1.82
2384 4703 2.290577 GCTGGGAAGAGACAAGGACATT 60.291 50.000 0.00 0.00 0.00 2.71
2417 4736 1.673168 CAACTGCCCAAGGATCTAGC 58.327 55.000 0.00 0.00 0.00 3.42
2421 4740 1.000396 AGCCAACTGCCCAAGGATC 60.000 57.895 0.00 0.00 42.71 3.36
2424 4743 1.228675 AAGAGCCAACTGCCCAAGG 60.229 57.895 0.00 0.00 42.71 3.61
2425 4744 0.825010 ACAAGAGCCAACTGCCCAAG 60.825 55.000 0.00 0.00 42.71 3.61
2426 4745 0.823356 GACAAGAGCCAACTGCCCAA 60.823 55.000 0.00 0.00 42.71 4.12
2438 4762 1.201181 AGCAGCGTAGAGTGACAAGAG 59.799 52.381 0.00 0.00 0.00 2.85
2567 5809 8.910944 CCTTCATCCAAGATTGTATTTCTTCAT 58.089 33.333 0.00 0.00 33.29 2.57
2568 5810 8.108999 TCCTTCATCCAAGATTGTATTTCTTCA 58.891 33.333 0.00 0.00 33.29 3.02
2569 5811 8.511604 TCCTTCATCCAAGATTGTATTTCTTC 57.488 34.615 0.00 0.00 33.29 2.87
2570 5812 7.559170 CCTCCTTCATCCAAGATTGTATTTCTT 59.441 37.037 0.00 0.00 33.29 2.52
2612 5854 4.464597 GTGAGTTGAGGAGAAGGTGTCTAT 59.535 45.833 0.00 0.00 36.41 1.98
2714 5971 8.113462 ACTTTGCATTTCCTAGGAGGTAATTAA 58.887 33.333 12.26 1.65 33.75 1.40
2735 5992 7.254286 GGGTTGTTGTTAACTTATGCAACTTTG 60.254 37.037 19.58 0.00 41.04 2.77
2761 6018 2.252855 GCTCGAGAGCGATACCCG 59.747 66.667 18.75 0.00 46.80 5.28
2802 6059 4.287720 GGTATACGCTTATTTGCAAAGGC 58.712 43.478 18.19 18.35 41.68 4.35
2858 6119 6.967199 GCCAAGTCCTTAGTGAAATAAATTCG 59.033 38.462 0.00 0.00 41.18 3.34
2859 6120 7.826690 TGCCAAGTCCTTAGTGAAATAAATTC 58.173 34.615 0.00 0.00 38.60 2.17
2860 6121 7.775053 TGCCAAGTCCTTAGTGAAATAAATT 57.225 32.000 0.00 0.00 0.00 1.82
2861 6122 7.961326 ATGCCAAGTCCTTAGTGAAATAAAT 57.039 32.000 0.00 0.00 0.00 1.40
2869 6130 6.260936 CCTTATACAATGCCAAGTCCTTAGTG 59.739 42.308 0.00 0.00 0.00 2.74
2876 6137 5.765182 ACATAGCCTTATACAATGCCAAGTC 59.235 40.000 0.00 0.00 0.00 3.01
2881 6142 5.875359 GGAGTACATAGCCTTATACAATGCC 59.125 44.000 0.00 0.00 0.00 4.40
2882 6143 5.875359 GGGAGTACATAGCCTTATACAATGC 59.125 44.000 0.00 0.00 0.00 3.56
2889 6150 7.192628 ACTATCATGGGAGTACATAGCCTTAT 58.807 38.462 0.00 0.00 0.00 1.73
2890 6151 6.562228 ACTATCATGGGAGTACATAGCCTTA 58.438 40.000 0.00 0.00 0.00 2.69
2895 6156 8.127150 TCATCAACTATCATGGGAGTACATAG 57.873 38.462 0.00 0.00 0.00 2.23
2899 6160 8.807118 TCTATTCATCAACTATCATGGGAGTAC 58.193 37.037 0.00 0.00 0.00 2.73
2927 6188 2.471815 ATGGGACGAAGGGAGTATCA 57.528 50.000 0.00 0.00 36.25 2.15
2930 6191 3.649843 ACATTATGGGACGAAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
2931 6192 2.478292 ACATTATGGGACGAAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
2932 6193 4.682778 TTACATTATGGGACGAAGGGAG 57.317 45.455 0.00 0.00 0.00 4.30
2933 6194 5.187687 GTTTTACATTATGGGACGAAGGGA 58.812 41.667 0.00 0.00 0.00 4.20
2934 6195 4.034742 CGTTTTACATTATGGGACGAAGGG 59.965 45.833 0.00 0.00 0.00 3.95
2935 6196 4.632688 ACGTTTTACATTATGGGACGAAGG 59.367 41.667 14.81 4.21 33.67 3.46
2936 6197 5.789710 ACGTTTTACATTATGGGACGAAG 57.210 39.130 14.81 0.00 33.67 3.79
2937 6198 6.557291 AAACGTTTTACATTATGGGACGAA 57.443 33.333 7.96 0.00 33.67 3.85
2938 6199 6.557291 AAAACGTTTTACATTATGGGACGA 57.443 33.333 24.13 0.00 33.67 4.20
2965 6226 6.281405 CCTCTTTTTCACAGTAGTGTAGTGT 58.719 40.000 2.08 0.00 46.01 3.55
2966 6227 5.177696 GCCTCTTTTTCACAGTAGTGTAGTG 59.822 44.000 2.08 0.00 46.01 2.74
2967 6228 5.070580 AGCCTCTTTTTCACAGTAGTGTAGT 59.929 40.000 2.08 0.00 46.01 2.73
2968 6229 5.542779 AGCCTCTTTTTCACAGTAGTGTAG 58.457 41.667 2.08 0.00 46.01 2.74
2969 6230 5.546621 AGCCTCTTTTTCACAGTAGTGTA 57.453 39.130 2.08 0.00 46.01 2.90
2970 6231 4.423625 AGCCTCTTTTTCACAGTAGTGT 57.576 40.909 0.00 0.00 46.01 3.55
2972 6233 6.420913 TTCTAGCCTCTTTTTCACAGTAGT 57.579 37.500 0.00 0.00 0.00 2.73
2973 6234 5.872070 CCTTCTAGCCTCTTTTTCACAGTAG 59.128 44.000 0.00 0.00 0.00 2.57
2974 6235 5.280011 CCCTTCTAGCCTCTTTTTCACAGTA 60.280 44.000 0.00 0.00 0.00 2.74
2975 6236 4.505742 CCCTTCTAGCCTCTTTTTCACAGT 60.506 45.833 0.00 0.00 0.00 3.55
2976 6237 4.006319 CCCTTCTAGCCTCTTTTTCACAG 58.994 47.826 0.00 0.00 0.00 3.66
2977 6238 3.650942 TCCCTTCTAGCCTCTTTTTCACA 59.349 43.478 0.00 0.00 0.00 3.58
2978 6239 4.287766 TCCCTTCTAGCCTCTTTTTCAC 57.712 45.455 0.00 0.00 0.00 3.18
2979 6240 4.383118 CGATCCCTTCTAGCCTCTTTTTCA 60.383 45.833 0.00 0.00 0.00 2.69
2980 6241 4.123506 CGATCCCTTCTAGCCTCTTTTTC 58.876 47.826 0.00 0.00 0.00 2.29
2981 6242 3.519913 ACGATCCCTTCTAGCCTCTTTTT 59.480 43.478 0.00 0.00 0.00 1.94
2982 6243 3.108376 ACGATCCCTTCTAGCCTCTTTT 58.892 45.455 0.00 0.00 0.00 2.27
2983 6244 2.432510 CACGATCCCTTCTAGCCTCTTT 59.567 50.000 0.00 0.00 0.00 2.52
2984 6245 2.035632 CACGATCCCTTCTAGCCTCTT 58.964 52.381 0.00 0.00 0.00 2.85
2985 6246 1.215673 TCACGATCCCTTCTAGCCTCT 59.784 52.381 0.00 0.00 0.00 3.69
2986 6247 1.693627 TCACGATCCCTTCTAGCCTC 58.306 55.000 0.00 0.00 0.00 4.70
2987 6248 2.158385 AGATCACGATCCCTTCTAGCCT 60.158 50.000 3.39 0.00 38.58 4.58
2988 6249 2.243810 AGATCACGATCCCTTCTAGCC 58.756 52.381 3.39 0.00 38.58 3.93
2989 6250 4.695217 CTAGATCACGATCCCTTCTAGC 57.305 50.000 3.39 0.00 38.58 3.42
2990 6251 4.075682 TGCTAGATCACGATCCCTTCTAG 58.924 47.826 3.39 10.23 39.13 2.43
2991 6252 3.821600 GTGCTAGATCACGATCCCTTCTA 59.178 47.826 3.39 0.00 38.58 2.10
2992 6253 2.625790 GTGCTAGATCACGATCCCTTCT 59.374 50.000 3.39 0.00 38.58 2.85
2993 6254 2.288518 GGTGCTAGATCACGATCCCTTC 60.289 54.545 3.39 0.00 38.58 3.46
2994 6255 1.689273 GGTGCTAGATCACGATCCCTT 59.311 52.381 3.39 0.00 38.58 3.95
2995 6256 1.333177 GGTGCTAGATCACGATCCCT 58.667 55.000 3.39 0.00 38.58 4.20
2996 6257 0.039074 CGGTGCTAGATCACGATCCC 60.039 60.000 3.39 0.00 38.58 3.85
2997 6258 0.664767 GCGGTGCTAGATCACGATCC 60.665 60.000 3.39 0.00 38.58 3.36
2998 6259 0.664767 GGCGGTGCTAGATCACGATC 60.665 60.000 0.00 0.00 37.83 3.69
2999 6260 1.364171 GGCGGTGCTAGATCACGAT 59.636 57.895 0.00 0.00 37.83 3.73
3000 6261 2.049767 TGGCGGTGCTAGATCACGA 61.050 57.895 0.00 0.00 37.83 4.35
3001 6262 1.878522 GTGGCGGTGCTAGATCACG 60.879 63.158 0.00 0.00 37.83 4.35
3002 6263 1.521681 GGTGGCGGTGCTAGATCAC 60.522 63.158 0.00 0.00 36.28 3.06
3003 6264 1.676678 GAGGTGGCGGTGCTAGATCA 61.677 60.000 0.00 0.00 0.00 2.92
3004 6265 1.068250 GAGGTGGCGGTGCTAGATC 59.932 63.158 0.00 0.00 0.00 2.75
3005 6266 1.685765 TGAGGTGGCGGTGCTAGAT 60.686 57.895 0.00 0.00 0.00 1.98
3006 6267 2.283604 TGAGGTGGCGGTGCTAGA 60.284 61.111 0.00 0.00 0.00 2.43
3007 6268 2.125512 GTGAGGTGGCGGTGCTAG 60.126 66.667 0.00 0.00 0.00 3.42
3008 6269 3.702048 GGTGAGGTGGCGGTGCTA 61.702 66.667 0.00 0.00 0.00 3.49
3016 6277 4.065281 GTCGTCGGGGTGAGGTGG 62.065 72.222 0.00 0.00 34.12 4.61
3017 6278 2.989824 AGTCGTCGGGGTGAGGTG 60.990 66.667 0.00 0.00 34.12 4.00
3018 6279 2.675772 GAGTCGTCGGGGTGAGGT 60.676 66.667 0.00 0.00 34.12 3.85
3019 6280 3.450115 GGAGTCGTCGGGGTGAGG 61.450 72.222 0.00 0.00 0.00 3.86
3020 6281 3.450115 GGGAGTCGTCGGGGTGAG 61.450 72.222 0.00 0.00 0.00 3.51
3023 6284 4.755507 GAGGGGAGTCGTCGGGGT 62.756 72.222 0.00 0.00 0.00 4.95
3028 6289 4.077180 AGGGGGAGGGGAGTCGTC 62.077 72.222 0.00 0.00 0.00 4.20
3029 6290 4.077180 GAGGGGGAGGGGAGTCGT 62.077 72.222 0.00 0.00 0.00 4.34
3067 6328 4.512914 GATCAGGGGCCCTGGTGC 62.513 72.222 44.07 30.97 46.20 5.01
3068 6329 3.813724 GGATCAGGGGCCCTGGTG 61.814 72.222 44.07 26.23 46.20 4.17
3095 6356 4.814041 GAGGAGCAGGGAGGGGCT 62.814 72.222 0.00 0.00 44.48 5.19
3097 6358 3.728305 ATGGAGGAGCAGGGAGGGG 62.728 68.421 0.00 0.00 0.00 4.79
3098 6359 2.040043 ATGGAGGAGCAGGGAGGG 60.040 66.667 0.00 0.00 0.00 4.30
3099 6360 2.146061 GGATGGAGGAGCAGGGAGG 61.146 68.421 0.00 0.00 0.00 4.30
3100 6361 1.383664 TGGATGGAGGAGCAGGGAG 60.384 63.158 0.00 0.00 0.00 4.30
3101 6362 1.690633 GTGGATGGAGGAGCAGGGA 60.691 63.158 0.00 0.00 0.00 4.20
3102 6363 1.980784 CTGTGGATGGAGGAGCAGGG 61.981 65.000 0.00 0.00 0.00 4.45
3103 6364 1.525923 CTGTGGATGGAGGAGCAGG 59.474 63.158 0.00 0.00 0.00 4.85
3104 6365 1.153208 GCTGTGGATGGAGGAGCAG 60.153 63.158 0.00 0.00 0.00 4.24
3105 6366 2.673200 GGCTGTGGATGGAGGAGCA 61.673 63.158 0.00 0.00 0.00 4.26
3106 6367 2.191641 GGCTGTGGATGGAGGAGC 59.808 66.667 0.00 0.00 0.00 4.70
3107 6368 2.503061 CGGCTGTGGATGGAGGAG 59.497 66.667 0.00 0.00 0.00 3.69
3108 6369 3.785859 GCGGCTGTGGATGGAGGA 61.786 66.667 0.00 0.00 0.00 3.71
3109 6370 4.864334 GGCGGCTGTGGATGGAGG 62.864 72.222 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.