>input_sequence_59817
--------------------------------------------------------------------------------
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-------------ACACGCCGCGCTCCAAGCTCTCCCACCGCAAGACCTCGCGCTCGCATCCAT----GGCCGCGGCAGC
CATCTCCCTCTGCGGCTCGCGCTGCGTCGGCCCGAGCCGGAAGCCCGAACCTCGCCTCGCCTCCCAAGCGGCCGCCGCGC
CGTGCG---CGCGGCCGTCGTCGTCGCGCCGAAAGCTGGTGGTCGCGGCCGCCAAGTCGTCGGGCAAGAAGGCGGACGAG
AAGGTCCCCTCCTGGGCCCGGCCGGGCTCCGACGAGCCTCCTCCGTGGGCGCGCGACGAAGGCGGGGCCTCGGGGCAGGA
AGGCGACGCCGCCCAGGTCCCGTTCTACGCATACCTGCTCGCGTCCGCCGTGACGGCCATCGCCGCCGTACGTTTCTCGA
GCCCTTCTTTATCTCCCC--CCTTCTTCTCCTCCTCCTCCGCTCCGC---TCCGCTGACCGTCGCATCCGCGTGCAGATC
GGGTCGATATTCGAGTACACGAACGGGCGGGCGGTGTTCGGCGTCGTGGGCACCGACAGCCCGCTCTACGCGCCCATCCT
CGGCTTCTTCGCCGTCACCGGCATCCCGACCTCCGTACGTACTCTGCCACGCCGGATCTATGCTAGTAGATTAAATTTGT
ATTGCAGTTGTTGATCGAGTTCATTCTCGTTTGGACT-CCAGGGGTATCTGTGGTACAAGGCCGTGCAGACGGCGAACAA
GGACGCTGAGGAGCAGGACCGCAGGGACGGCTTCCTCTGATTTGGTT-TCTTGGGAGAGCAATGAACACGCTGAACATAT
A----ATGTACACCCTGTGTTCATTAATACAAGAAGTTTTGGCAGTTTTATTTAAACTACCAAAACGTCTTATATTAATG
AACAGAGGTACTAGTACTTAGTAGTATTCGTTTTTGGTAAATTTGTTGCCGATCGAGCAGAGCAGATGGGTTAGCACTGG
AAAAACAGCAGCAGGTGGACTAAGAGCAGAAGGTCTTGCCTGCTTCCTCTTCTA----CACATGGAGCATTCGCCGTCTG
AACTCTGCGTTTGAATGGAGGAGATGTGTCCGTTCAGTTTTCCCTGAGATGTCGTGTTCGCCATACGAATCCTTCGCACC
TCGTTGTGAGTGTGTATATGAAGGCTCATGAATATATCGAATCCATC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>chr1D_1_TraesCS1D01G307900
ACAACCAAATTCTAGCGCATCGCTACCTTTGCAAATCCAACTGACCCCTCGTTTCCTCGTTTAGGAGAGTTGATACACAC
CTGGCAATGGTGCACTCTAACAACGAGTGGTGCTATGTATCT--------TCATCGTAGTAGATGGAGCACCTGTTCAAC
AATGCAATATTTATGTGTTTTATATATCCATGAAAGGAAGGAATAGCTTGGCCAACCTCCATAGAACAACACAACCTTTT
GCTTAGACCTGCACCTGCCATAGCGTAGTAGACGGTTTTTTTCTTTTCCCCGCCAATCGTCAGAATTCATAGGTCTCTCT
TCCAACTAGTCTTCCCTCTTGCTCTTTGTACTTAATAGAAGACAATGTGATGATCTCACTATGAATACCTGATGGCCTTT
GGTTGCTAAGCCCATAAGTCATCTAGTTGGCCTGTACTCAACGGAGTCTTTACAATTTCCTCAACATCCCTTGACAGGAA
GAAATGACGCAACTTTTATTCGTTCGACGTTGCTAATGATGCTTCGATAAATCCACTCGATAATATTGCCAGATCAGGTT
CATACATGCGATAGGACACACTGAACTTTTCATTGGAATCCGATTCTCGTTACAAGCAGTAGTGAGATCGTCCATTCCTA
TTCTTC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTCACAAGCCCTGACTTCAAAGTGTCTCATTCCTTGATGGCTGCTCTGCA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GGAAGCTTGAAACATGAGG
GAGCGCTGTTTTTTTTTGAGACAATCATGGAGCATTTTTTTTGGACAATGACGGAGCA----------------------
-------TTGCTTTTTTTTAGACAATGACGGAGCA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTGCTGAATTCGGTATTGGAGCCCAGTTTTTTTTTCCT
GTT----AGGGGAGTATTTGAGCCCAGCTCAATAAAAGCTTAA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------TGCGTCCCTCACACGTGGGCCGCTAAAGCTCAGCCCA
CAGCACGTGACCAACGGAGGAGAAGCCGGCAACCGTGCACCGTGCGCCGCGCACGTCCTATCCACACTCCT-CGGTCGAC
TCCACACACACACACACGCCGCGCTCCAAGCTCTCCCACCGCAAGACCTCGCGCTCGCATCCAT----GGCCGCGGCAGC
CATCTCCCTCTGCGGCTCGCGCTGCGTCGGCCCGAGCCGGAAGCCCGAACCTCGCCTCGCCTCCCAAGCGGCCGCCGCGC
CGTGCG---CGCGGCCGTCGTCGTCGCGCCGAAAGCTGGTGGTCGCGGCCGCCAAGTCGTCGGGCAAGAAGGCGGACGAG
AAGGTCCCCTCCTGGGCCCGGCCGGGCTCCGACGAGCCTCCTCCGTGGGCGCGCGACGAAGGCGGGGCCTCGGGGCAGGA
AGGCGACGCCGCCCAGGTCCCGTTCTACGCATACCTGCTCGCGTCCGCCGTGACGGCCATCGCCGCCGTACGTTTCTCGA
GCCCTTCTTTATCTCCCC--CCTTCTTCTCCTCCTCCTCCGCTCCGC---TCCGCTGACCGTCGCATCCGCGTGCAGATC
GGGTCGATATTCGAGTACACGAACGGGCGGGCGGTGTTCGGCGTCGTGGGCACCGACAGCCCGCTCTACGCGCCCATCCT
CGGCTTCTTCGCCGTCACCGGCATCCCGACCTCCGTACGTACTCTGCCACGCCGGATCTATGCTAGTAGATTAAATTTGT
ATTGCAGTTGTTGATCGAGTTCATTCTCGTTTGGACT-CCAGGGGTATCTGTGGTACAAGGCCGTGCAGACGGCGAACAA
GGACGCTGAGGAGCAGGACCGCAGGGACGGCTTCCTCTGATTTGGTT-TCTTGGGAGAGCAATGAACACGCTGAACATAT
A----ATGTACACCCTGTGTTCATTAATACAAGAAGTTTTGGCAGTTTTATTTAAACTACCAAAACGTCTTATATTAATG
AACAGAGGTACTAGTACTTAGTAGTATTCGTTTTTGGTAAATTTGTTGCCGATCGAGCAGAGCAGATGGGTTAGCACTGG
AAAAACAGCAGCAGGTGGACTAAGAGCAGAAGGTCTTGCCTGCTTCCTCTTCTA----CACATGGAGCATTCGCCGTCTG
AACTCTGCGTTTGAATGGAGGAGATGTGTCCGTTCAGTTTTCCCTGAGATGTCGTGTTCGCCATACGAATCCTTCGCACC
TCGTTGTGAGTGTGTATATGAAGGCTCATGAATATATCGAATCCATCAA--CACACTTGCAAGTTACTCCCTCCGTAAAG
AAATTAGTGATCTAAACGCTCTTATATTTCTTTACAGAGGGAGTACAACGCAAACTAGTCTTTGCTCTGAAGTTTCATTT
TTTTAAACATGTAATCGTCCTTGTCCTAGAGTACCAGCC-TTTGTTGCTGGTTGTGCTTAATGTTAACATAATTGAGCAT
AAAACATCACGAGGCTAGTGGAAAATTAGATTTGTTGCTATGCTGAATGCATGTCTAGTGACAATGTCCTTGTCTCTTCC
CAGCGTTCAAGACCAGCTAGATCCTT-----GGGCAGTTGGCTCTTGTCACTCTACGCTGC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TTGTTTTATATGTCCTC
TGATTACGTAGGTGTC-TTTTCTTTTTGCAAGTTAGGAGCTTTATTGCTTAACC--------------------------
---------ATGTTGGTAACAATCACGAGAAATACAATCTTTTTGAAAATGAAGAAATACAATCTTGGATGAAGGAGGAA
ATACAGTTAATCCATAGACACCTTCTCCTCAACTCACTAGCTTGATGGGCCCAACGTTGAGCAACCACGTTGGCCTCTCA
ATTATTGACATAAG---------------TACAGCTCTCGCAAAGCTCCTTTAATTACCTCCTAGGAAATGCAAAGTTGC
ATAAGTTAACAACAACCCGGGTATCGCTCTCGAGCACAATATGATCAAATCCATAGATG-CCTTTGCAAATAAGCGTATA
CCCTCTACAAATAAGTAG---ATATGCTTAAAGGAAAACGAATTTATTTCACTAAGGACTTGGCATTGTATAAGGCTATG
TACTCCCATGATAGTTGATGAATAGATTGATACTCCCTTCGTCCCATAATGTAAAACGTTTTTTCACACTACACTACTGT
GAAAAAGAGGCTAGAAGGGATCGTGATCTAGCACCGCCACCTCACCCCGACGACTCCCCTCCCCCTCGCGTCGCCTCCCC
TTGGGCGGCACCAGGGCCCCTGATCCCGCGCCGCCAGCCCCTCCCTGCTCCTCCATCCACAGCCGCCGCTGC
>chr1B_1
ACAACCAACTTCTAGCGCATCGCTCCCTTTGCAAATCCAACAGACCCCTCGTTTCCTCGTTAGGGAGAGCCCATACACAC
CTGGCAATGGTGCACTCTAACAACGAGTGGTGTTATGTATCTTCAATTCTTCATCGCCGCAGATCGAACACATGTTCAAC
GATGCAATA-TTATGTGTTTTATAGATCCACGAAAGGAAGGAATAGCTTGGCCAACCTCCATAGAACAACATAACCTTTT
GCTTGGACTTGCACCTACCATAGTGCAATAGACGTGTTTTCCCCA----CCGCCAATCGTCAGAATTCATAGGTCTCCCT
CCCAACTAGTCTTCCCTCTTGCTCTTTGTACTTAATAGAAGATGATGTGATGATCTCACTATGAATATCCGATGGCCTTT
GGTTGCTAAGCACAGAAGCCATCTAGTTGGCGTGTACTTGGCAGAGTCTTTTCAATTTCCTCAACGTCCATTAACAGGAA
GAGATCACGCAGCTTTTGTTCATTTGACGTTGCTAACGATGCTTCGATAAATCCACTCAACAATGTTGGCAGATCAGGTT
CATACATGCGATAGGACACATTGAACCTTCCATTGGAATCCAATTCTTGTTACAAGCAGTAGTGAGCTCGTCAGTTCCTA
TTCTTTTCACAAGCCCTAACTTCAAAGTGTCTCGTTCCTCGATGACAGCTCTGCAAACCTGTGGTGGATGAGAGCCAAGT
GACACATAAAAAAAAATCTCTATCTGGATAGTATTTTGACATGAGTATTTGAGCACTAGGGAATCCAATTCTTGTTACAA
GCAGTAGTGAGCTCGTTAGTTCCTATTCTTTTCACAAGCCCTGACTTCAAAGTGTCTCGTTCCTCGATGACAGCTCTGCA
AACCTGTGGTGGATGAGAGCCAAGTGACACATAAAAAAAAATCTCTATCTGGATAGTATTTTGACATGATTATTTGAGCA
CTAGGGCTTCCTGGATCATGCAAGATTCGGCACTTCTGACTGGCTAAGGGGGCAAGGTTGAAAGTCTCGAAACCTAGCCC
CCATAAATCTTGGTTTCCTTTTTTTATTGAAGTAATAAATCTTGGTTTCCACATATCATTTCATGAGACCCAACCCCTTT
CCCTTCTCTATCCTCCCACCAAAACTCCGGAGGATAAAATTCAATTTGACAAAGTCCATGAGGAAGCTTGAAACATGACA
GAGCG-------TTTTTTAAACAATGATGGAGCGGGTTTTTTTAGACAATATGGAGCTTTTTTTTTGTTGAGACAAGTGA
TGGAATGTTGCTTTTTTTTGGACAATGACGGAGCGGGGAAGTATGATACCATTCCTTACATGATACCATGATACTAACTT
GCAAAATTCAAATTTAAACATATTAAAAAATTCTGAAAAGAATCGTGCATGTTCGCAACACATATGTCGACAACCCCTAA
AAAATTCAGATCAAATTTGCCTTTTTTGTTTCCCTTTGGGTATTTTGAATTTCGATCTTAATTTTTTAGGGGTTGTCGAC
ATATTTGTTGTGGACATCCATGATATTTTTCAGATTTATTTGATATGTTTAAAACTAAATTTTGCAGGTTATTATTTATA
ATATCATGTAAGGAATGGTATCACACTTTCCCTGACGGACCGTTGCTGAATCCGGTATTTGAGCCCAGTTATTTTTTGAC
GATGATGAGGGGAGTATTTGAGCCCAGCTCAATAAAAGCTTAAGAGGAAAGTATCATTTCCCCCCTCAAATCCTTCATGA
TGGATCAAATCCCCCCTCAAGTCTAAAACCGGATTAATCACCCCCTCAAATCTGTAATACCGGATCAATCAGGCCCCGAG
CGGTTTTGAACAAGATTTTAGGTGGTTTTGATAGGAACTGCAAGATTTCTAACTTGTCGGCGTCGCCGACGACGTGGAAA
TTTTCTAGGATCTCGGCACCGGCGACGTGCTCCCCCGGCCGACCCCTTATTCTAGGGGAATCTGGCTCAGAAGGATCGCT
GACGCGGACTTCGGCTCGACGCACATGTTCGGGAGGCGAGCTCCCCGAGGAGGAAGACAGCCATATGCAAAACCTGCGCG
CTGACAGAGTTGAAGAGGACCTCCACAAAGCCATTGATCAGGGCGGCCGCCTCGCGCCAGAGTCGCCCGATCCTGCAGGC
GCATGTTTTATGCATGCTTGATGACCAGGCAATCTGAACCAGTTACATATGCAGTGCAGACATGATCAATCAGTCTAATT
TCCTGATTATGCAACTCACATCGGGCAGCACAACACGGGATAGGATTCCCAACATTCTTCTCAAGTAACCTGACAGTCTT
AACATGTGTACATACTTCAGTCCAATCCACAAGCGATTGCAGCACACCCACCAATTCAGGTCCTATTAAAAAAATCAGTT
CAACTAGATTCCCAGCACAAGTGATTTCTTCATATTAACACACATGCTCGTGCACCAGTTGTTTGGACAGGGCTGCCATT
GTCACGGACGAGGACTTGGAAGACACAACCTGAACCGGCTATGGAGGTTGTGCACGGCGATCCAATTGGAGGAGCATGAT
ATGGCTCACACTGGCCGACGACTATGCTGCGGCTGACCCCGATATGGCTCACACCGGCCGTCTACTTCCTCACCAACACG
CAAGCGCAGACCATGTTCGTGCAGCAGGGCACGAAGACGGACTCCCACATCACGGGCAGCGCCGCCGACGTCCATCGAGA
CGGTGCTCGTCGCCACCTGCGTCACGATCATAACAGGGCCGTCGCATCATCCGTGGCGTTCGCGCCGCTGCGGCTCATGG
GGATCGGGCACGCGACGGCGACTGGCACAGTGGCCACCATGGCCGCGTGCGCCGAGACGCGCAGGCTGCAGATGGCGGCA
CAAATGGGCATAGCGTGGCTACTGCTGCAGTACGTCATGATGGACACGTGGAGAATGAGCTGGTAGCAAAGTCCTCGACG
GGCTCGCTCGCCGCCACCCGACAAGTTCAAAATCGTGCGATTCTTCTCCAAAACCACCTAAAATCCTGCTCAAAACCACT
CGGGGCCTGATTGATCCGGTATTACAGATTTGAGGGGGTGATTAATCCGGTTTTAGACTTGAGGGGGATTTGATCCATCA
TGAAGGATTTGAGGGGGAAAACGATACTTTCCTCAAAGCTTAATGCGTCCCTCACACGTGGGCCGCTAAAGCTCAGCCCA
CAGCACGTGACCACTGGAGGAGAAACCGGGAACCGTTCACCGTGCGCCGCGCACGTCCTATCCACACTCCCCCGGTCGAC
TC--------CACACACACCGCGCTCCAAGCTCTCCCACCGCAAGACCTCGCGCTCGCATCCAT----GGCCGCGGCAGC
CATTTCCCTCTGCGGCTCGCGCTGCGTCGGCCCGAGCCGGACGCCCGAATCTCGCCTCGCCTCGCAAGCCGCCGCCGCGC
CGTGCG---CGCGGCCGTCGTCGTCGCGCCGAAGGCTGGTGGTCGTGGCCGCCAAGTCGTCGGGGAAGAAGGCGGACGAG
AAGGTCCCCTCCTGGGCCCGGCCGGGCTCCGACGAGCCTCCTCCGTGGGCGCGCGACGAAGGCGGGGCCTCGGGGCAGGA
AGGCGACGCCGTCCAGGTTCCTTTCTACGCGTACCTGCTCGCGTCCGCCGTGACGGCCATCGCCGCCGTACC-TTCTCCA
ACCCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCGCTCCGC---TCCGCTGACCGTCGCATCCG----CAGATC
GGGTCGATATTCGAGTACACGAACGGGCGGGCGGTGTTCGGCGTGGTGGGCACGGACAGCCCCCTCTACGCGCCCATCCT
GGGCTTCTTCGCCGTCACCGGCATCCCGACCTCCGTACGTGCATCTTTCATGCCCCGATCGATCCTAAGCTACTAAGT--
-TTGCACTTCTTGATGGAGTTCATTCTCGTTTGGATCCCCAGGGGTATCTGTGGTACAAGGCCGTGCAGACGGCGAACAA
GGACGCCGAGGAGCAGGACCGCAGGGACGGCTTCCTCTGATTTGGTT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
TCTTTAACATGTAATCGTCTTTGTTCTAGAGTACCAGCC-TTT-TTGCTGGTTGTGCTTAATGTTAACACAATTGAGCAT
AAAACATCACGAGGCTATGGGGAAATTAGATTTGTTGCTATGTTGAATGCATGTCTGGTGACCATGTCCTTGTCTCTTCC
CAGCGTTCAAGACCAACAAA----ATCCTTGGGGCAGTCGGATCTTGTCACTCTACGCTGCATTGTTTTATGGAAAACTC
TTAGTGCCAACCGGCGGATTTCTCTCGTTCATCCGCCGCCTCCCATGCACCGCTTTGGGTGCTGCCTCATCTTCTCATCG
GATTACTCCTAGCCATATCTTTTTTTTTCTTGCCTTCTTCCTTTCTTCCCCAAAGCCATCCAACCTCTTTCCATCAGGCA
TGCAAGCACAACAGCGCCAACCCATGCTCACTAGCAAGCCTCCGGTGGATACCACAACCCTGCCATGTTCTTCCCCAACC
CAGCCACGGATGTCCATGGAGGTAGCATGCAGCCAGCAGCTAGGGGCTACAACAACAATCACCCATGGAGTAGCATGCGA
GCTCGCCGGCCGGTGCAACTGGCGACGGGAATTGGTGGCGCTCGGGATAGGAACTCGGAGCTGGATGGCCTTGGGGTTGG
TGGCCACAACGGCGAACGATGGTGGTGCTGCTGACAAGGATGTTGACGTTTTTGCAACTTAATTTTCATTGAATTTTCTG
CAACATCATCCGTGTTGCAAAAACTTCTTCCGCAATAACACCCATGCTGCAGAAATTGAAGACGAAAAAAATATTCTACA
ACACATCTATGTTGCAAAAGTTCTTTCCGCAACAATATCCATATTGTAGAAAAGTGAAGACGAAATTTTTTATGTAACAT
CGTCTATGTTGCAAAAATTCATTCCGCAATAATATCAATGTTGCAGAAAAGTAAAGACGAAAAAAATTATGCAACAACAC
TAATGTTGCAAAAGAGTTTCTATAACATGTGCTCTATTGCAATGATGATGACGGGGTTGAGCCGTTCGATGGTGCCAAAT
CTAACGGTCACTGAGGAGGTGGATCTTTTCAGATTGTCCGTCGGCAGACACGTAGCGCTGCCCTTGTTTTATATGTCCTC
TGAGTATGTAGGTGTT-TTTTTTTTTTGCAAGTTAGGAGCTTTATCGATTAACC--------------------------
---------ATGTTGGTTACAATCACG-------------------------AGAAATACAATCTTGGATGAAGGAGGAA
ATACAGTTAATCCGTAGACACCTTCTCCTCAACTCACTAGCTTGATGGGCCCAACGTTGAGCAACCACGTTGGCCTCTCA
ATTATTGACATAAGGTAACTAAAAGCTAGTAAAGCTCTCGCAAAGCTCCTCTAATTACCTCATGGGAAATGAAAAGTTGC
ATAAGTTAACAACAACCGGGGTATCGCTCTCGAGCACAATATGATCAAGTCTAATAGACACCTTTGCAAATAAGCATATA
CCCTCTACAAATAAGTACAACATGTGCTTAAAGGAAAATTGGTTTATTTAACTAAGCACTTCACATTGTCCAAGGATATT
TACTCCCATGATAGTTGATGAATAGATCGA--------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr1A_939
--------------------------------------------------------------------------------
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------------------------------AACCGTGCACCGTGCGCCGCGCACGTCCTATCCACACTCGCCCGGTCGAT
TC--------CACACACACCGCGCTCCAAG--CTCCCACCGCAAGACCTCGCGCTCGCATCCATCCATGGCCGCGGCAGC
CATCTCCCTCTGCGGCTCGCGCTGCGTCGGCCCGAGCCGGAAGCCCGAACCTCGCCTCGCCTCCCAAGCGGGCGCCGCGC
CGTGCGCGACGCGGCCGTCGTCGTCGCGCCGAAGGCTGGTGGTCGCGGCCGCCAAGTCGTCGGGCAAGAAGGCGGACGAG
AAGGTCCCCTCCTGGGCCCGGCCGGGCTCCGACGAGGCCCCGCCGTGGGCGCGCGACGAGGGCGGGGCCTCGGGGCAGGA
CGGCGAGGCCGCCCAGGTCCCGTTCTACGCCTACCTGCTCGCGTCCGCCGTGACGGCCATCGCCGCCGTACGTTCCTCCA
ACCCTTCTTTAT---CCC--CCTTCTTCTCCTCCTCCTCCGCTCAAGGGATCCGCTGACCGTCGCGTCCGCGTGCAGATC
GGGTCGATATTCGAGTACACGAACGGGCGGGCGGTGTTCGGCGTGGTGGGCACCGACAGCCCGCTCTACGCGCCCATCCT
CGGCTTCTTCGCCGTCACCGGCATCCCGACCTCCGTACGTCCATCTTTTATCA---GATCGATCCTAC---ACTAAAT--
-TTGCACTTCTTGATCGAGGAGTT----GTCTGGATT-CCAGGGGTATCTGTGGTACAAGGCCGTGCAGACGGCGAACAA
GGACGCCGAGGAGCAGGACCGCAGGGACGGCTTCCTCTGATTTGGTTTTCTTGGGAGAGCAATGAACACGCTGAACATAC
TTATGATGTACGCCCTGTGTTCATTAATACAAGACGTTTTGGCAGTTTAATTCGAACTGCCAAAACGTCTTATGTTAATG
AACAGAGGTAGTGGTACTTAGTAGTATTCGTTTTTGGTAAATTTGTTGCCGATCGAGCAGAGCAGATGGGTTAGCACTGG
AAAAGCAGCAGCAGGTGGACTAAGAGCAGAAGATCTTGCCTGCTCCCTCCCTCCTCTGCACATGGAGCATTCGCCGTCTG
AACTCTGCGTTTGAATGGAGGAAGTGTCTCCGTTCAGTTTTCCCTGAGATATCGT-------------------------
----TGTGAGTGTGTATATGAAGGCTCATGAATATATCGAATCCATCAATGCACACTTGCAAGTTGCTGCGCAAAGTCGC
-----------------------------------------------------------CTTTGCTCTGAAGTTTCATTT
TCTTTAACATGTAATCGTCTTTGTTCTAGAGTACCAGCCTTTT-TTGCTGGTTGTGCTTAATGTTAACATAATCGAGCAT
AAACCCTCACGAGGCTAGGGGGTAATTACATTTGTTGCCATGCTGAATGCATGTCTAGCGACCATGTCCTTGTCTCTTCC
CAGCGTTCAAGACCAACTAAATAGATCCTTGGGGCAGTTGGGTCTTGTCACTCTAGA-TGCATTGTTTTA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TATATGTCCTC
TGATTACGTAGGTGTCCTTTTCTTTTTGCAAATTAGGATCTTTATTGATCATTATTTTTTGCGGGGGAGGAGCTTTATTG
ATTAACCAAATGTTGGTAACAATCACGAGAAATACAATCTT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>SNPs
--------S---------------S----------------S-------------------SS------SSS--------
--------------------------------S-----------------------SS-S----S--S---S--------
S--------S--------------S-----S----------------------------------------S--------
----S---S-------S------S-S-S------SS----SS-SSSSSS----------------------------S--
S-----------------------------------------SS-----------------------S-S----------
-----------S--S---S------------S------SSS-S--------S-------------S---S--S-------
--S--S-----S-----S---S--S-----------S---------------------S-S---S---S-----------
--------------------S-----S--S-----------S-----S------------------S-----SS------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S-----S----S-S--------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------SS
-----SSSSSSS-----S-S-----S-------SSS------SSSSS-SS-S-----S----------------------
-------------------S--------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S-------S----------S------SSS
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------SS---------S----S----------------------------------------S---------
--SSSSSSSS-------S--------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
------------------------------S-----------------------------------------------S-
S-------------S-----------------------------------------------------------------
--------------------------------------------S-----------------------------------
----------------------------------------S-SSSSSSSSS--SSSSS-SSSSSSSS--S-SSS-SS-SS
S-----S--S-------------------------S--------------------------------------------
------S------------------------------------------------------------------------S
S----------S----------------------S-------------S---SS----S--------------S------
----------S-S-------------------------------------------------------------------
----S---------------------------S-----------S----SSSSS--------------------------
----------------------SS---S----------------------S----SSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------------------------------------------------------------S--S-SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
-S--S--------------S----S------------------S------------------------------------
------------------S--S----------------------------------------S-----------------
---------------S---S--SSS----------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-----------------------------------------SSSSSSSSSSS----------------------------
-------------S------------------------------------------------------------------
-------------------------------S------------------S----------S-S-------S--------
-----------------S------------------------------S--S-SSSSSS----------------S----
-----------------S-----S--------------SSSS-------S------S----SS------SS----S---S
---------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_62
------------------------------------------GACCCCTCGTTTCCTCGTTT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_3887
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CCACGCCGGATCTATGCTAG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_1207
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TTGAAACATGAGG
GAGCGCT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_4388
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AATCCTTCGCACC
TCGTTGT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_4291
--------------------------------------------------------------------------------
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-------------------------------GGTCTTGCCTGCTTCCTCTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_6257
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------GGGATCGTGATCTAGCACCG--------------------------------------------
------------------------------------------------------------------------
