Multiple sequence alignment - TraesCS1D01G307000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G307000 chr1D 100.000 2533 0 0 1 2533 403666058 403668590 0.000000e+00 4678.0
1 TraesCS1D01G307000 chr1D 97.333 75 1 1 2459 2533 320215498 320215571 2.650000e-25 126.0
2 TraesCS1D01G307000 chr1A 88.593 1464 111 22 88 1536 499178039 499179461 0.000000e+00 1727.0
3 TraesCS1D01G307000 chr1A 94.595 74 4 0 2386 2459 499180836 499180909 5.730000e-22 115.0
4 TraesCS1D01G307000 chr3D 85.623 626 61 16 1785 2383 610473018 610472395 4.600000e-177 630.0
5 TraesCS1D01G307000 chr5D 85.479 606 62 21 1789 2383 24041902 24041312 2.150000e-170 608.0
6 TraesCS1D01G307000 chr5D 93.902 82 3 2 2453 2533 525331180 525331260 3.420000e-24 122.0
7 TraesCS1D01G307000 chr5D 92.857 84 4 2 2450 2533 480420026 480419945 1.230000e-23 121.0
8 TraesCS1D01G307000 chr2A 84.959 605 64 24 1784 2379 25194741 25195327 2.810000e-164 588.0
9 TraesCS1D01G307000 chr2A 85.260 597 57 18 1784 2369 25226992 25227568 1.010000e-163 586.0
10 TraesCS1D01G307000 chr2A 84.893 609 56 23 1784 2379 25137887 25138472 1.310000e-162 582.0
11 TraesCS1D01G307000 chr2A 84.551 602 56 24 1784 2369 25239937 25240517 1.700000e-156 562.0
12 TraesCS1D01G307000 chr2A 84.474 599 62 28 1784 2369 25289105 25289685 1.700000e-156 562.0
13 TraesCS1D01G307000 chr2A 84.307 599 61 20 1784 2369 25275110 25275688 2.850000e-154 555.0
14 TraesCS1D01G307000 chr2A 89.724 399 31 7 1988 2383 710769706 710770097 3.760000e-138 501.0
15 TraesCS1D01G307000 chr2A 93.023 86 3 3 2449 2533 334352626 334352709 3.420000e-24 122.0
16 TraesCS1D01G307000 chr1B 84.615 325 27 12 1465 1776 543004373 543004687 4.100000e-78 302.0
17 TraesCS1D01G307000 chr5B 77.824 239 44 8 286 520 132298268 132298501 3.400000e-29 139.0
18 TraesCS1D01G307000 chr6B 91.304 92 5 3 2443 2533 497676950 497676861 3.420000e-24 122.0
19 TraesCS1D01G307000 chr6B 89.130 92 8 2 2442 2533 184225455 184225544 2.060000e-21 113.0
20 TraesCS1D01G307000 chr6D 93.827 81 3 2 2453 2533 18339347 18339425 1.230000e-23 121.0
21 TraesCS1D01G307000 chr4D 93.827 81 3 2 2453 2533 312962701 312962779 1.230000e-23 121.0
22 TraesCS1D01G307000 chr4D 89.583 96 6 3 2441 2533 127138029 127137935 4.430000e-23 119.0
23 TraesCS1D01G307000 chr7B 94.203 69 4 0 88 156 149614678 149614746 3.450000e-19 106.0
24 TraesCS1D01G307000 chr7B 88.608 79 7 2 85 162 637478609 637478532 7.460000e-16 95.3
25 TraesCS1D01G307000 chr3A 93.939 66 4 0 88 153 647496183 647496118 1.600000e-17 100.0
26 TraesCS1D01G307000 chr3A 93.846 65 4 0 89 153 738218368 738218304 5.770000e-17 99.0
27 TraesCS1D01G307000 chr7D 92.424 66 5 0 88 153 620992816 620992751 7.460000e-16 95.3
28 TraesCS1D01G307000 chr7A 92.424 66 5 0 88 153 675403887 675403822 7.460000e-16 95.3
29 TraesCS1D01G307000 chr5A 92.424 66 5 0 88 153 400576444 400576509 7.460000e-16 95.3
30 TraesCS1D01G307000 chr2B 92.424 66 5 0 88 153 548017751 548017816 7.460000e-16 95.3
31 TraesCS1D01G307000 chr2B 85.556 90 7 5 995 1083 74333894 74333810 3.470000e-14 89.8
32 TraesCS1D01G307000 chr2D 82.222 90 9 6 995 1083 47006996 47006913 1.260000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G307000 chr1D 403666058 403668590 2532 False 4678 4678 100.000 1 2533 1 chr1D.!!$F2 2532
1 TraesCS1D01G307000 chr1A 499178039 499180909 2870 False 921 1727 91.594 88 2459 2 chr1A.!!$F1 2371
2 TraesCS1D01G307000 chr3D 610472395 610473018 623 True 630 630 85.623 1785 2383 1 chr3D.!!$R1 598
3 TraesCS1D01G307000 chr5D 24041312 24041902 590 True 608 608 85.479 1789 2383 1 chr5D.!!$R1 594
4 TraesCS1D01G307000 chr2A 25194741 25195327 586 False 588 588 84.959 1784 2379 1 chr2A.!!$F2 595
5 TraesCS1D01G307000 chr2A 25226992 25227568 576 False 586 586 85.260 1784 2369 1 chr2A.!!$F3 585
6 TraesCS1D01G307000 chr2A 25137887 25138472 585 False 582 582 84.893 1784 2379 1 chr2A.!!$F1 595
7 TraesCS1D01G307000 chr2A 25239937 25240517 580 False 562 562 84.551 1784 2369 1 chr2A.!!$F4 585
8 TraesCS1D01G307000 chr2A 25289105 25289685 580 False 562 562 84.474 1784 2369 1 chr2A.!!$F6 585
9 TraesCS1D01G307000 chr2A 25275110 25275688 578 False 555 555 84.307 1784 2369 1 chr2A.!!$F5 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.250234 CGGGTCCAGATCTTGAGCAA 59.750 55.0 22.97 0.0 0.0 3.91 F
1217 1232 0.179134 CGGATCTCCTCGTCAACCAC 60.179 60.0 0.00 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1438 1453 0.245266 TTCCATGCTCGAAGCGTACA 59.755 50.0 0.0 0.0 46.26 2.90 R
2475 3727 0.042731 CACCCTCCCCCTCTAGTCAA 59.957 60.0 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.332063 AGGCTGACATGTTAATCCGG 57.668 50.000 0.00 0.00 0.00 5.14
20 21 1.837439 AGGCTGACATGTTAATCCGGA 59.163 47.619 6.61 6.61 0.00 5.14
21 22 2.439507 AGGCTGACATGTTAATCCGGAT 59.560 45.455 12.38 12.38 0.00 4.18
22 23 2.549754 GGCTGACATGTTAATCCGGATG 59.450 50.000 19.95 8.49 0.00 3.51
23 24 3.206150 GCTGACATGTTAATCCGGATGT 58.794 45.455 19.95 12.26 0.00 3.06
24 25 4.377021 GCTGACATGTTAATCCGGATGTA 58.623 43.478 19.95 9.81 0.00 2.29
25 26 4.449068 GCTGACATGTTAATCCGGATGTAG 59.551 45.833 19.95 10.75 0.00 2.74
26 27 5.739070 GCTGACATGTTAATCCGGATGTAGA 60.739 44.000 19.95 8.06 0.00 2.59
27 28 5.597806 TGACATGTTAATCCGGATGTAGAC 58.402 41.667 19.95 14.26 0.00 2.59
28 29 5.128008 TGACATGTTAATCCGGATGTAGACA 59.872 40.000 19.95 19.13 0.00 3.41
29 30 5.357257 ACATGTTAATCCGGATGTAGACAC 58.643 41.667 19.95 9.08 0.00 3.67
30 31 5.128827 ACATGTTAATCCGGATGTAGACACT 59.871 40.000 19.95 1.41 0.00 3.55
31 32 6.322969 ACATGTTAATCCGGATGTAGACACTA 59.677 38.462 19.95 0.28 0.00 2.74
32 33 6.387041 TGTTAATCCGGATGTAGACACTAG 57.613 41.667 19.95 0.00 0.00 2.57
33 34 6.124340 TGTTAATCCGGATGTAGACACTAGA 58.876 40.000 19.95 0.00 0.00 2.43
34 35 6.039047 TGTTAATCCGGATGTAGACACTAGAC 59.961 42.308 19.95 5.96 0.00 2.59
35 36 3.639672 TCCGGATGTAGACACTAGACA 57.360 47.619 0.00 0.00 0.00 3.41
36 37 3.959293 TCCGGATGTAGACACTAGACAA 58.041 45.455 0.00 0.00 0.00 3.18
37 38 3.945921 TCCGGATGTAGACACTAGACAAG 59.054 47.826 0.00 0.00 0.00 3.16
38 39 3.489398 CCGGATGTAGACACTAGACAAGC 60.489 52.174 0.00 0.00 0.00 4.01
39 40 3.128764 CGGATGTAGACACTAGACAAGCA 59.871 47.826 0.00 0.00 0.00 3.91
40 41 4.202060 CGGATGTAGACACTAGACAAGCAT 60.202 45.833 0.00 0.00 0.00 3.79
41 42 5.046529 GGATGTAGACACTAGACAAGCATG 58.953 45.833 0.00 0.00 0.00 4.06
42 43 3.849911 TGTAGACACTAGACAAGCATGC 58.150 45.455 10.51 10.51 0.00 4.06
43 44 3.511540 TGTAGACACTAGACAAGCATGCT 59.488 43.478 16.30 16.30 0.00 3.79
44 45 2.969990 AGACACTAGACAAGCATGCTG 58.030 47.619 23.48 17.40 0.00 4.41
45 46 2.005451 GACACTAGACAAGCATGCTGG 58.995 52.381 23.48 22.16 0.00 4.85
46 47 1.625315 ACACTAGACAAGCATGCTGGA 59.375 47.619 29.07 5.38 0.00 3.86
47 48 2.238144 ACACTAGACAAGCATGCTGGAT 59.762 45.455 29.07 17.89 0.00 3.41
48 49 3.276857 CACTAGACAAGCATGCTGGATT 58.723 45.455 29.07 17.12 0.00 3.01
49 50 3.311871 CACTAGACAAGCATGCTGGATTC 59.688 47.826 29.07 16.22 0.00 2.52
50 51 2.803030 AGACAAGCATGCTGGATTCT 57.197 45.000 29.07 18.26 0.00 2.40
51 52 3.083122 AGACAAGCATGCTGGATTCTT 57.917 42.857 29.07 5.36 0.00 2.52
52 53 3.015327 AGACAAGCATGCTGGATTCTTC 58.985 45.455 29.07 14.74 0.00 2.87
53 54 2.097825 ACAAGCATGCTGGATTCTTCC 58.902 47.619 29.07 0.00 42.94 3.46
54 55 1.407979 CAAGCATGCTGGATTCTTCCC 59.592 52.381 23.48 0.00 41.83 3.97
55 56 0.924823 AGCATGCTGGATTCTTCCCT 59.075 50.000 21.98 0.00 41.83 4.20
56 57 2.130193 AGCATGCTGGATTCTTCCCTA 58.870 47.619 21.98 0.00 41.83 3.53
57 58 2.715336 AGCATGCTGGATTCTTCCCTAT 59.285 45.455 21.98 0.00 41.83 2.57
58 59 2.818432 GCATGCTGGATTCTTCCCTATG 59.182 50.000 11.37 0.00 41.83 2.23
59 60 3.497405 GCATGCTGGATTCTTCCCTATGA 60.497 47.826 11.37 0.00 41.83 2.15
60 61 4.810033 GCATGCTGGATTCTTCCCTATGAT 60.810 45.833 11.37 0.00 41.83 2.45
61 62 4.362470 TGCTGGATTCTTCCCTATGATG 57.638 45.455 0.00 0.00 41.83 3.07
62 63 3.975982 TGCTGGATTCTTCCCTATGATGA 59.024 43.478 0.00 0.00 41.83 2.92
63 64 4.413189 TGCTGGATTCTTCCCTATGATGAA 59.587 41.667 0.00 0.00 41.83 2.57
64 65 4.759183 GCTGGATTCTTCCCTATGATGAAC 59.241 45.833 0.00 0.00 41.83 3.18
65 66 5.688500 GCTGGATTCTTCCCTATGATGAACA 60.689 44.000 0.00 0.00 41.83 3.18
66 67 5.933617 TGGATTCTTCCCTATGATGAACAG 58.066 41.667 0.00 0.00 41.83 3.16
67 68 5.429762 TGGATTCTTCCCTATGATGAACAGT 59.570 40.000 0.00 0.00 41.83 3.55
68 69 5.762218 GGATTCTTCCCTATGATGAACAGTG 59.238 44.000 0.00 0.00 39.23 3.66
69 70 4.142609 TCTTCCCTATGATGAACAGTGC 57.857 45.455 0.00 0.00 0.00 4.40
70 71 3.519107 TCTTCCCTATGATGAACAGTGCA 59.481 43.478 0.00 0.00 0.00 4.57
71 72 3.998913 TCCCTATGATGAACAGTGCAA 57.001 42.857 0.00 0.00 0.00 4.08
72 73 3.877559 TCCCTATGATGAACAGTGCAAG 58.122 45.455 0.00 0.00 0.00 4.01
73 74 2.357009 CCCTATGATGAACAGTGCAAGC 59.643 50.000 0.00 0.00 0.00 4.01
74 75 3.011818 CCTATGATGAACAGTGCAAGCA 58.988 45.455 0.00 0.00 0.00 3.91
75 76 3.064958 CCTATGATGAACAGTGCAAGCAG 59.935 47.826 0.00 0.00 0.00 4.24
76 77 0.594602 TGATGAACAGTGCAAGCAGC 59.405 50.000 0.00 0.00 45.96 5.25
77 78 0.879765 GATGAACAGTGCAAGCAGCT 59.120 50.000 0.00 0.00 45.94 4.24
78 79 2.079158 GATGAACAGTGCAAGCAGCTA 58.921 47.619 0.00 0.00 45.94 3.32
79 80 1.516161 TGAACAGTGCAAGCAGCTAG 58.484 50.000 0.00 0.00 45.94 3.42
80 81 0.801251 GAACAGTGCAAGCAGCTAGG 59.199 55.000 0.00 0.00 45.94 3.02
81 82 1.239968 AACAGTGCAAGCAGCTAGGC 61.240 55.000 11.22 11.22 45.94 3.93
82 83 2.435586 AGTGCAAGCAGCTAGGCG 60.436 61.111 12.84 0.00 45.94 5.52
83 84 4.171416 GTGCAAGCAGCTAGGCGC 62.171 66.667 14.63 14.63 45.94 6.53
86 87 2.501128 CAAGCAGCTAGGCGCCTA 59.499 61.111 33.24 33.24 40.39 3.93
94 95 3.364277 CTAGGCGCCTAGGTCAAAC 57.636 57.895 43.43 10.14 41.58 2.93
147 148 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
149 150 4.699637 TGCAGACTAAAAAGAAACGGAGA 58.300 39.130 0.00 0.00 0.00 3.71
153 154 5.119434 CAGACTAAAAAGAAACGGAGAGAGC 59.881 44.000 0.00 0.00 0.00 4.09
155 156 5.552178 ACTAAAAAGAAACGGAGAGAGCAT 58.448 37.500 0.00 0.00 0.00 3.79
159 160 2.079925 AGAAACGGAGAGAGCATTTGC 58.920 47.619 0.00 0.00 42.49 3.68
217 218 3.090532 GGGCCGGGTCCAGATCTT 61.091 66.667 14.16 0.00 0.00 2.40
223 224 0.250234 CGGGTCCAGATCTTGAGCAA 59.750 55.000 22.97 0.00 0.00 3.91
224 225 1.743996 GGGTCCAGATCTTGAGCAAC 58.256 55.000 22.97 7.26 0.00 4.17
233 234 4.626604 CAGATCTTGAGCAACTGTTCTCTC 59.373 45.833 15.79 13.40 0.00 3.20
236 237 2.423926 TGAGCAACTGTTCTCTCGAC 57.576 50.000 15.79 0.00 0.00 4.20
260 261 1.153229 GGACTGATAACCGGGTGCC 60.153 63.158 0.00 0.00 0.00 5.01
263 264 1.068741 GACTGATAACCGGGTGCCTAG 59.931 57.143 0.00 0.00 0.00 3.02
277 279 1.117150 GCCTAGACACCGGGTATTCA 58.883 55.000 6.32 0.00 0.00 2.57
287 289 5.511363 ACACCGGGTATTCAAAATCCATTA 58.489 37.500 6.32 0.00 0.00 1.90
316 318 5.304101 TGGAACCAACATCAACTTTTGCTAT 59.696 36.000 0.00 0.00 0.00 2.97
320 322 4.853196 CCAACATCAACTTTTGCTATCACG 59.147 41.667 0.00 0.00 0.00 4.35
328 330 5.401531 ACTTTTGCTATCACGGTCTTAGA 57.598 39.130 0.00 0.00 0.00 2.10
334 336 4.570772 TGCTATCACGGTCTTAGATTTTGC 59.429 41.667 0.00 0.00 0.00 3.68
369 371 4.017126 ACATTTTTGCTACCCCTAGCTTC 58.983 43.478 0.00 0.00 45.20 3.86
384 386 2.205307 GCTTCGGCTATAACTGACGT 57.795 50.000 0.00 0.00 37.22 4.34
387 389 3.508762 CTTCGGCTATAACTGACGTTGT 58.491 45.455 0.00 0.00 37.22 3.32
388 390 3.581024 TCGGCTATAACTGACGTTGTT 57.419 42.857 11.55 11.55 37.22 2.83
405 407 0.799534 GTTGTCGCCATTGATGCTGC 60.800 55.000 0.00 0.00 0.00 5.25
407 409 1.242665 TGTCGCCATTGATGCTGCAA 61.243 50.000 6.36 0.00 0.00 4.08
411 413 1.140161 CCATTGATGCTGCAACCGG 59.860 57.895 6.36 0.00 0.00 5.28
474 476 1.142936 TGGAGCTACCATGGATGCAT 58.857 50.000 26.36 0.00 44.64 3.96
478 480 1.073444 AGCTACCATGGATGCATCAGG 59.927 52.381 27.25 24.77 0.00 3.86
480 482 1.701292 CTACCATGGATGCATCAGGGA 59.299 52.381 27.25 20.03 38.23 4.20
483 485 0.894184 CATGGATGCATCAGGGAGGC 60.894 60.000 27.25 9.25 39.95 4.70
534 536 5.275695 CCTTTTTGTTTTGTGATTGACGACG 60.276 40.000 0.00 0.00 0.00 5.12
535 537 4.343811 TTTGTTTTGTGATTGACGACGT 57.656 36.364 0.00 0.00 0.00 4.34
540 542 0.728129 TGTGATTGACGACGTCGAGC 60.728 55.000 41.52 30.55 43.02 5.03
598 600 4.559063 CGCCTGGCATGAGGGAGG 62.559 72.222 20.29 0.00 33.17 4.30
609 611 2.124236 AGGGAGGGAGCGTAGACG 60.124 66.667 0.00 0.00 43.27 4.18
635 637 2.590092 GGGGCAGTCGCTATGGTT 59.410 61.111 0.00 0.00 38.60 3.67
661 663 5.673337 TCTCGTGTTCTTTTCAGATTTGG 57.327 39.130 0.00 0.00 0.00 3.28
664 666 4.878971 TCGTGTTCTTTTCAGATTTGGACA 59.121 37.500 0.00 0.00 0.00 4.02
668 670 5.068987 TGTTCTTTTCAGATTTGGACAAGGG 59.931 40.000 0.00 0.00 0.00 3.95
669 671 4.803452 TCTTTTCAGATTTGGACAAGGGT 58.197 39.130 0.00 0.00 0.00 4.34
670 672 5.947663 TCTTTTCAGATTTGGACAAGGGTA 58.052 37.500 0.00 0.00 0.00 3.69
801 803 8.657074 ATTGCTCATTATTCAAACATTGGATG 57.343 30.769 0.00 0.00 29.81 3.51
878 880 7.413446 TCCCAATCAATAAAAGACTTCCTCAT 58.587 34.615 0.00 0.00 0.00 2.90
888 890 4.086706 AGACTTCCTCATTTTTCACCGT 57.913 40.909 0.00 0.00 0.00 4.83
931 933 2.096069 CCGTGATGCAGAACAGAAACAG 60.096 50.000 0.00 0.00 0.00 3.16
934 936 4.083643 CGTGATGCAGAACAGAAACAGAAT 60.084 41.667 0.00 0.00 0.00 2.40
976 991 5.587289 TCAGCAATACAGTTGTCAAAAACC 58.413 37.500 0.00 0.00 0.00 3.27
991 1006 2.234300 AAACCGTGACAACATCTCGT 57.766 45.000 0.00 0.00 41.66 4.18
1018 1033 0.811616 CATGGAGGCCAAGCTCGTAC 60.812 60.000 5.01 0.00 36.95 3.67
1029 1044 1.186200 AGCTCGTACTGATCCTTGCA 58.814 50.000 0.00 0.00 0.00 4.08
1035 1050 1.065854 GTACTGATCCTTGCAGCCTGT 60.066 52.381 0.00 0.00 36.86 4.00
1049 1064 3.350833 CAGCCTGTATCTTGCTTTCCTT 58.649 45.455 0.00 0.00 31.77 3.36
1050 1065 3.376546 CAGCCTGTATCTTGCTTTCCTTC 59.623 47.826 0.00 0.00 31.77 3.46
1051 1066 3.009473 AGCCTGTATCTTGCTTTCCTTCA 59.991 43.478 0.00 0.00 29.17 3.02
1071 1086 1.890876 TCAGCAACAAAGGTACGCAT 58.109 45.000 0.00 0.00 0.00 4.73
1072 1087 1.535028 TCAGCAACAAAGGTACGCATG 59.465 47.619 0.00 0.00 0.00 4.06
1073 1088 1.266718 CAGCAACAAAGGTACGCATGT 59.733 47.619 0.00 0.00 0.00 3.21
1114 1129 3.781079 TTTTGCACACACAAGGAAGAG 57.219 42.857 0.00 0.00 0.00 2.85
1115 1130 1.679139 TTGCACACACAAGGAAGAGG 58.321 50.000 0.00 0.00 0.00 3.69
1116 1131 0.836606 TGCACACACAAGGAAGAGGA 59.163 50.000 0.00 0.00 0.00 3.71
1117 1132 1.211703 TGCACACACAAGGAAGAGGAA 59.788 47.619 0.00 0.00 0.00 3.36
1118 1133 1.604278 GCACACACAAGGAAGAGGAAC 59.396 52.381 0.00 0.00 0.00 3.62
1161 1176 5.576447 AACAAACACCAGGAACTAACAAG 57.424 39.130 0.00 0.00 36.02 3.16
1217 1232 0.179134 CGGATCTCCTCGTCAACCAC 60.179 60.000 0.00 0.00 0.00 4.16
1336 1351 1.374758 GGCTCAACTCCACCGTCAG 60.375 63.158 0.00 0.00 0.00 3.51
1400 1415 2.386660 GCTCTGCACTCTCAACGGC 61.387 63.158 0.00 0.00 0.00 5.68
1403 1418 3.865929 CTGCACTCTCAACGGCGGT 62.866 63.158 13.24 0.00 0.00 5.68
1418 1433 3.945434 GGTCAGCCGATGCATGCG 61.945 66.667 14.09 7.77 41.13 4.73
1438 1453 0.383231 AACGAGACGGTCTTGTTCGT 59.617 50.000 29.60 22.40 45.45 3.85
1445 1460 0.662374 CGGTCTTGTTCGTGTACGCT 60.662 55.000 4.67 0.00 39.60 5.07
1452 1467 1.000233 GTTCGTGTACGCTTCGAGCA 61.000 55.000 4.67 0.00 42.58 4.26
1453 1468 0.109458 TTCGTGTACGCTTCGAGCAT 60.109 50.000 4.67 0.00 42.58 3.79
1455 1470 1.742900 CGTGTACGCTTCGAGCATGG 61.743 60.000 4.67 0.00 42.58 3.66
1457 1472 0.245266 TGTACGCTTCGAGCATGGAA 59.755 50.000 0.00 0.00 42.58 3.53
1481 1496 3.685214 CTTCAGGCCCGTCTCGTCG 62.685 68.421 0.00 0.00 0.00 5.12
1483 1498 4.052229 CAGGCCCGTCTCGTCGTT 62.052 66.667 0.00 0.00 0.00 3.85
1485 1500 4.790861 GGCCCGTCTCGTCGTTCC 62.791 72.222 0.00 0.00 0.00 3.62
1497 1512 1.602605 TCGTTCCTCGACTGCTCCA 60.603 57.895 0.00 0.00 44.01 3.86
1536 1551 3.174313 AGGCTGCACCCTGATGTT 58.826 55.556 0.00 0.00 40.58 2.71
1537 1552 1.001641 AGGCTGCACCCTGATGTTC 60.002 57.895 0.00 0.00 40.58 3.18
1540 1555 0.607489 GCTGCACCCTGATGTTCAGT 60.607 55.000 0.00 0.00 42.80 3.41
1541 1556 1.162698 CTGCACCCTGATGTTCAGTG 58.837 55.000 4.00 0.00 42.80 3.66
1551 1849 3.096852 TGATGTTCAGTGATACTCCGGT 58.903 45.455 0.00 0.00 0.00 5.28
1554 1852 2.426024 TGTTCAGTGATACTCCGGTAGC 59.574 50.000 0.00 0.00 35.17 3.58
1564 1862 3.202001 CCGGTAGCCATGCAACGG 61.202 66.667 0.00 0.00 34.84 4.44
1565 1863 2.435938 CGGTAGCCATGCAACGGT 60.436 61.111 7.32 0.74 0.00 4.83
1566 1864 2.749865 CGGTAGCCATGCAACGGTG 61.750 63.158 0.00 0.00 0.00 4.94
1575 1873 2.175811 GCAACGGTGCCGCTTTAG 59.824 61.111 16.48 0.00 45.68 1.85
1576 1874 2.322081 GCAACGGTGCCGCTTTAGA 61.322 57.895 16.48 0.00 45.68 2.10
1577 1875 1.847890 GCAACGGTGCCGCTTTAGAA 61.848 55.000 16.48 0.00 45.68 2.10
1579 1877 0.872388 AACGGTGCCGCTTTAGAAAG 59.128 50.000 10.87 0.00 44.19 2.62
1580 1878 0.250166 ACGGTGCCGCTTTAGAAAGT 60.250 50.000 10.87 0.00 44.19 2.66
1581 1879 0.165944 CGGTGCCGCTTTAGAAAGTG 59.834 55.000 8.32 8.32 44.10 3.16
1587 1885 1.234821 CGCTTTAGAAAGTGGCACCA 58.765 50.000 15.27 0.00 41.56 4.17
1589 1887 2.604614 CGCTTTAGAAAGTGGCACCAAC 60.605 50.000 15.27 5.73 41.56 3.77
1590 1888 2.360801 GCTTTAGAAAGTGGCACCAACA 59.639 45.455 15.27 0.00 38.28 3.33
1591 1889 3.005791 GCTTTAGAAAGTGGCACCAACAT 59.994 43.478 15.27 0.00 38.28 2.71
1592 1890 4.798574 CTTTAGAAAGTGGCACCAACATC 58.201 43.478 15.27 5.86 0.00 3.06
1593 1891 2.664402 AGAAAGTGGCACCAACATCT 57.336 45.000 15.27 8.10 0.00 2.90
1595 1893 2.624838 AGAAAGTGGCACCAACATCTTG 59.375 45.455 15.27 0.00 0.00 3.02
1597 1895 2.071778 AGTGGCACCAACATCTTGTT 57.928 45.000 15.27 0.00 42.08 2.83
1599 1897 2.362077 AGTGGCACCAACATCTTGTTTC 59.638 45.455 15.27 0.00 38.77 2.78
1600 1898 1.336440 TGGCACCAACATCTTGTTTCG 59.664 47.619 0.00 0.00 38.77 3.46
1609 1990 2.612212 ACATCTTGTTTCGTTGTTCGCT 59.388 40.909 0.00 0.00 39.67 4.93
1617 1998 4.135493 GTTGTTCGCTCTCGCCGC 62.135 66.667 0.00 0.00 35.26 6.53
1652 2034 3.438781 GTCAAAACCAAGCGATGACCATA 59.561 43.478 0.00 0.00 35.51 2.74
1669 2051 3.239449 CCATAGTCATGGCCAGGTAGTA 58.761 50.000 18.43 11.43 45.29 1.82
1677 2059 2.999331 TGGCCAGGTAGTAGAAATTGC 58.001 47.619 0.00 0.00 0.00 3.56
1683 2065 2.092375 AGGTAGTAGAAATTGCCCAGCC 60.092 50.000 0.00 0.00 0.00 4.85
1694 2076 4.157607 CCCAGCCGGCGATAAAAT 57.842 55.556 23.20 0.00 0.00 1.82
1695 2077 1.654220 CCCAGCCGGCGATAAAATG 59.346 57.895 23.20 12.00 0.00 2.32
1696 2078 1.101049 CCCAGCCGGCGATAAAATGT 61.101 55.000 23.20 0.00 0.00 2.71
1699 2081 2.450160 CAGCCGGCGATAAAATGTTTC 58.550 47.619 23.20 0.00 0.00 2.78
1700 2082 2.088423 AGCCGGCGATAAAATGTTTCA 58.912 42.857 23.20 0.00 0.00 2.69
1701 2083 2.687935 AGCCGGCGATAAAATGTTTCAT 59.312 40.909 23.20 0.00 0.00 2.57
1704 2086 4.026886 GCCGGCGATAAAATGTTTCATTTC 60.027 41.667 12.58 0.00 0.00 2.17
1705 2087 5.098893 CCGGCGATAAAATGTTTCATTTCA 58.901 37.500 9.30 0.00 0.00 2.69
1736 2120 4.350368 AAACAAAGGCTTGTATTTGGGG 57.650 40.909 0.00 0.00 45.25 4.96
1744 2128 3.513515 GGCTTGTATTTGGGGATCACAAA 59.486 43.478 14.62 14.62 41.50 2.83
1751 2135 4.599047 TTTGGGGATCACAAACACAATC 57.401 40.909 9.85 0.00 33.26 2.67
1754 2138 3.244596 TGGGGATCACAAACACAATCGTA 60.245 43.478 0.00 0.00 0.00 3.43
1755 2139 3.126343 GGGGATCACAAACACAATCGTAC 59.874 47.826 0.00 0.00 0.00 3.67
1757 2141 4.394920 GGGATCACAAACACAATCGTACAT 59.605 41.667 0.00 0.00 0.00 2.29
1759 2143 4.140518 TCACAAACACAATCGTACATGC 57.859 40.909 0.00 0.00 0.00 4.06
1765 2149 4.678509 ACACAATCGTACATGCGAAAAT 57.321 36.364 0.00 0.00 44.38 1.82
1779 2919 1.373570 GAAAATCAGGGTCCGAGCAG 58.626 55.000 0.00 0.00 0.00 4.24
1848 2994 4.827087 CCATGCCTCGCTGCTCGT 62.827 66.667 0.00 0.00 39.67 4.18
1849 2995 3.260483 CATGCCTCGCTGCTCGTC 61.260 66.667 0.00 0.00 39.67 4.20
1850 2996 4.862092 ATGCCTCGCTGCTCGTCG 62.862 66.667 0.00 0.00 39.67 5.12
2039 3283 4.021925 GCTGCTCGTCCCAACCCT 62.022 66.667 0.00 0.00 0.00 4.34
2041 3285 2.525629 TGCTCGTCCCAACCCTGA 60.526 61.111 0.00 0.00 0.00 3.86
2346 3597 7.851822 AATGTATTGTAGTGTTTTTCGCAAG 57.148 32.000 0.00 0.00 0.00 4.01
2383 3635 4.973663 GTGGTGGTTTGTGAAATTTACTCG 59.026 41.667 0.00 0.00 0.00 4.18
2384 3636 3.978855 GGTGGTTTGTGAAATTTACTCGC 59.021 43.478 0.00 0.00 0.00 5.03
2393 3645 5.968848 TGTGAAATTTACTCGCAAACAAGTC 59.031 36.000 0.00 0.00 30.59 3.01
2404 3656 2.737252 GCAAACAAGTCTAGGAACTCGG 59.263 50.000 0.00 0.00 41.75 4.63
2413 3665 1.459592 CTAGGAACTCGGCAAACAACG 59.540 52.381 0.00 0.00 41.75 4.10
2443 3695 1.759445 CCCAACCATGTGTCAAACCAA 59.241 47.619 0.00 0.00 0.00 3.67
2459 3711 1.453155 CCAAAAGATGGTCCCGTCTG 58.547 55.000 8.80 0.00 44.85 3.51
2460 3712 1.003118 CCAAAAGATGGTCCCGTCTGA 59.997 52.381 8.80 0.00 44.85 3.27
2461 3713 2.552155 CCAAAAGATGGTCCCGTCTGAA 60.552 50.000 8.80 0.00 44.85 3.02
2462 3714 3.146066 CAAAAGATGGTCCCGTCTGAAA 58.854 45.455 8.80 0.00 41.02 2.69
2463 3715 2.770164 AAGATGGTCCCGTCTGAAAG 57.230 50.000 8.80 0.00 41.02 2.62
2464 3716 0.905357 AGATGGTCCCGTCTGAAAGG 59.095 55.000 7.26 0.00 40.44 3.11
2465 3717 0.902531 GATGGTCCCGTCTGAAAGGA 59.097 55.000 0.00 0.00 0.00 3.36
2466 3718 1.486726 GATGGTCCCGTCTGAAAGGAT 59.513 52.381 0.00 0.00 30.92 3.24
2467 3719 0.902531 TGGTCCCGTCTGAAAGGATC 59.097 55.000 0.72 1.09 30.92 3.36
2468 3720 0.179108 GGTCCCGTCTGAAAGGATCG 60.179 60.000 0.72 0.00 30.92 3.69
2469 3721 0.815734 GTCCCGTCTGAAAGGATCGA 59.184 55.000 0.00 0.00 30.92 3.59
2470 3722 1.409427 GTCCCGTCTGAAAGGATCGAT 59.591 52.381 0.00 0.00 30.92 3.59
2471 3723 2.621998 GTCCCGTCTGAAAGGATCGATA 59.378 50.000 0.00 0.00 30.92 2.92
2472 3724 3.256136 GTCCCGTCTGAAAGGATCGATAT 59.744 47.826 0.00 0.00 30.92 1.63
2473 3725 4.458295 GTCCCGTCTGAAAGGATCGATATA 59.542 45.833 0.00 0.00 30.92 0.86
2474 3726 4.700692 TCCCGTCTGAAAGGATCGATATAG 59.299 45.833 0.00 0.00 0.00 1.31
2475 3727 4.459685 CCCGTCTGAAAGGATCGATATAGT 59.540 45.833 0.00 0.00 0.00 2.12
2476 3728 5.047943 CCCGTCTGAAAGGATCGATATAGTT 60.048 44.000 0.00 0.00 0.00 2.24
2477 3729 5.859114 CCGTCTGAAAGGATCGATATAGTTG 59.141 44.000 0.00 0.00 0.00 3.16
2478 3730 6.294010 CCGTCTGAAAGGATCGATATAGTTGA 60.294 42.308 0.00 0.00 0.00 3.18
2479 3731 6.579292 CGTCTGAAAGGATCGATATAGTTGAC 59.421 42.308 0.00 1.69 0.00 3.18
2480 3732 7.520776 CGTCTGAAAGGATCGATATAGTTGACT 60.521 40.741 0.00 0.00 0.00 3.41
2481 3733 8.784994 GTCTGAAAGGATCGATATAGTTGACTA 58.215 37.037 0.00 0.00 0.00 2.59
2482 3734 9.004717 TCTGAAAGGATCGATATAGTTGACTAG 57.995 37.037 0.00 0.00 0.00 2.57
2483 3735 8.919777 TGAAAGGATCGATATAGTTGACTAGA 57.080 34.615 0.00 0.00 0.00 2.43
2484 3736 9.004717 TGAAAGGATCGATATAGTTGACTAGAG 57.995 37.037 0.00 0.00 0.00 2.43
2485 3737 7.931578 AAGGATCGATATAGTTGACTAGAGG 57.068 40.000 0.00 0.00 0.00 3.69
2486 3738 6.419791 AGGATCGATATAGTTGACTAGAGGG 58.580 44.000 0.00 0.00 0.00 4.30
2487 3739 5.591067 GGATCGATATAGTTGACTAGAGGGG 59.409 48.000 0.00 0.00 0.00 4.79
2488 3740 4.919793 TCGATATAGTTGACTAGAGGGGG 58.080 47.826 0.00 0.00 0.00 5.40
2489 3741 4.600547 TCGATATAGTTGACTAGAGGGGGA 59.399 45.833 0.00 0.00 0.00 4.81
2490 3742 4.944930 CGATATAGTTGACTAGAGGGGGAG 59.055 50.000 0.00 0.00 0.00 4.30
2491 3743 3.621682 ATAGTTGACTAGAGGGGGAGG 57.378 52.381 0.00 0.00 0.00 4.30
2492 3744 0.340208 AGTTGACTAGAGGGGGAGGG 59.660 60.000 0.00 0.00 0.00 4.30
2493 3745 0.042881 GTTGACTAGAGGGGGAGGGT 59.957 60.000 0.00 0.00 0.00 4.34
2494 3746 0.042731 TTGACTAGAGGGGGAGGGTG 59.957 60.000 0.00 0.00 0.00 4.61
2495 3747 0.854039 TGACTAGAGGGGGAGGGTGA 60.854 60.000 0.00 0.00 0.00 4.02
2496 3748 0.338814 GACTAGAGGGGGAGGGTGAA 59.661 60.000 0.00 0.00 0.00 3.18
2497 3749 1.027815 ACTAGAGGGGGAGGGTGAAT 58.972 55.000 0.00 0.00 0.00 2.57
2498 3750 2.179424 GACTAGAGGGGGAGGGTGAATA 59.821 54.545 0.00 0.00 0.00 1.75
2499 3751 2.180308 ACTAGAGGGGGAGGGTGAATAG 59.820 54.545 0.00 0.00 0.00 1.73
2500 3752 0.269173 AGAGGGGGAGGGTGAATAGG 59.731 60.000 0.00 0.00 0.00 2.57
2501 3753 1.386057 AGGGGGAGGGTGAATAGGC 60.386 63.158 0.00 0.00 0.00 3.93
2502 3754 1.696314 GGGGGAGGGTGAATAGGCA 60.696 63.158 0.00 0.00 0.00 4.75
2503 3755 1.286305 GGGGGAGGGTGAATAGGCAA 61.286 60.000 0.00 0.00 0.00 4.52
2504 3756 0.106669 GGGGAGGGTGAATAGGCAAC 60.107 60.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.837439 TCCGGATTAACATGTCAGCCT 59.163 47.619 0.00 0.00 0.00 4.58
1 2 2.325583 TCCGGATTAACATGTCAGCC 57.674 50.000 0.00 0.00 0.00 4.85
2 3 3.206150 ACATCCGGATTAACATGTCAGC 58.794 45.455 16.19 0.00 0.00 4.26
3 4 5.692204 GTCTACATCCGGATTAACATGTCAG 59.308 44.000 16.19 8.59 31.83 3.51
4 5 5.128008 TGTCTACATCCGGATTAACATGTCA 59.872 40.000 16.19 1.82 31.83 3.58
5 6 5.462398 GTGTCTACATCCGGATTAACATGTC 59.538 44.000 16.19 0.00 31.83 3.06
6 7 5.128827 AGTGTCTACATCCGGATTAACATGT 59.871 40.000 16.19 12.96 33.95 3.21
7 8 5.601662 AGTGTCTACATCCGGATTAACATG 58.398 41.667 16.19 6.57 0.00 3.21
8 9 5.871396 AGTGTCTACATCCGGATTAACAT 57.129 39.130 16.19 0.52 0.00 2.71
9 10 6.039047 GTCTAGTGTCTACATCCGGATTAACA 59.961 42.308 16.19 13.41 0.00 2.41
10 11 6.039047 TGTCTAGTGTCTACATCCGGATTAAC 59.961 42.308 16.19 10.92 0.00 2.01
11 12 6.124340 TGTCTAGTGTCTACATCCGGATTAA 58.876 40.000 16.19 4.62 0.00 1.40
12 13 5.687780 TGTCTAGTGTCTACATCCGGATTA 58.312 41.667 16.19 9.90 0.00 1.75
13 14 4.533815 TGTCTAGTGTCTACATCCGGATT 58.466 43.478 16.19 9.22 0.00 3.01
14 15 4.166246 TGTCTAGTGTCTACATCCGGAT 57.834 45.455 12.38 12.38 0.00 4.18
15 16 3.639672 TGTCTAGTGTCTACATCCGGA 57.360 47.619 6.61 6.61 0.00 5.14
16 17 3.489398 GCTTGTCTAGTGTCTACATCCGG 60.489 52.174 0.00 0.00 0.00 5.14
17 18 3.128764 TGCTTGTCTAGTGTCTACATCCG 59.871 47.826 0.00 0.00 0.00 4.18
18 19 4.720649 TGCTTGTCTAGTGTCTACATCC 57.279 45.455 0.00 0.00 0.00 3.51
19 20 4.505922 GCATGCTTGTCTAGTGTCTACATC 59.494 45.833 11.37 0.00 0.00 3.06
20 21 4.161189 AGCATGCTTGTCTAGTGTCTACAT 59.839 41.667 16.30 0.00 0.00 2.29
21 22 3.511540 AGCATGCTTGTCTAGTGTCTACA 59.488 43.478 16.30 0.00 0.00 2.74
22 23 3.862267 CAGCATGCTTGTCTAGTGTCTAC 59.138 47.826 19.98 0.00 0.00 2.59
23 24 3.118992 CCAGCATGCTTGTCTAGTGTCTA 60.119 47.826 19.98 0.00 31.97 2.59
24 25 2.354503 CCAGCATGCTTGTCTAGTGTCT 60.355 50.000 19.98 0.00 31.97 3.41
25 26 2.005451 CCAGCATGCTTGTCTAGTGTC 58.995 52.381 19.98 0.00 31.97 3.67
26 27 1.625315 TCCAGCATGCTTGTCTAGTGT 59.375 47.619 19.98 0.00 31.97 3.55
27 28 2.391616 TCCAGCATGCTTGTCTAGTG 57.608 50.000 19.98 4.76 31.97 2.74
28 29 3.199508 AGAATCCAGCATGCTTGTCTAGT 59.800 43.478 19.98 0.00 31.97 2.57
29 30 3.806380 AGAATCCAGCATGCTTGTCTAG 58.194 45.455 19.98 5.37 31.97 2.43
30 31 3.920231 AGAATCCAGCATGCTTGTCTA 57.080 42.857 19.98 0.00 31.97 2.59
31 32 2.803030 AGAATCCAGCATGCTTGTCT 57.197 45.000 19.98 14.69 31.97 3.41
32 33 2.098770 GGAAGAATCCAGCATGCTTGTC 59.901 50.000 19.98 12.60 45.79 3.18
33 34 2.097825 GGAAGAATCCAGCATGCTTGT 58.902 47.619 19.98 3.69 45.79 3.16
34 35 2.865343 GGAAGAATCCAGCATGCTTG 57.135 50.000 19.98 15.87 45.79 4.01
44 45 5.762218 CACTGTTCATCATAGGGAAGAATCC 59.238 44.000 0.00 0.00 45.77 3.01
45 46 5.238214 GCACTGTTCATCATAGGGAAGAATC 59.762 44.000 0.00 0.00 35.84 2.52
46 47 5.128919 GCACTGTTCATCATAGGGAAGAAT 58.871 41.667 0.00 0.00 35.84 2.40
47 48 4.019411 TGCACTGTTCATCATAGGGAAGAA 60.019 41.667 0.00 0.00 31.22 2.52
48 49 3.519107 TGCACTGTTCATCATAGGGAAGA 59.481 43.478 0.00 0.00 0.00 2.87
49 50 3.877559 TGCACTGTTCATCATAGGGAAG 58.122 45.455 0.00 0.00 0.00 3.46
50 51 3.998913 TGCACTGTTCATCATAGGGAA 57.001 42.857 0.00 0.00 0.00 3.97
51 52 3.877559 CTTGCACTGTTCATCATAGGGA 58.122 45.455 0.00 0.00 0.00 4.20
52 53 2.357009 GCTTGCACTGTTCATCATAGGG 59.643 50.000 0.00 0.00 0.00 3.53
53 54 3.011818 TGCTTGCACTGTTCATCATAGG 58.988 45.455 0.00 0.00 0.00 2.57
54 55 3.487042 GCTGCTTGCACTGTTCATCATAG 60.487 47.826 0.00 0.00 42.31 2.23
55 56 2.421073 GCTGCTTGCACTGTTCATCATA 59.579 45.455 0.00 0.00 42.31 2.15
56 57 1.201647 GCTGCTTGCACTGTTCATCAT 59.798 47.619 0.00 0.00 42.31 2.45
57 58 0.594602 GCTGCTTGCACTGTTCATCA 59.405 50.000 0.00 0.00 42.31 3.07
58 59 0.879765 AGCTGCTTGCACTGTTCATC 59.120 50.000 0.00 0.00 45.94 2.92
59 60 2.082231 CTAGCTGCTTGCACTGTTCAT 58.918 47.619 7.79 0.00 45.94 2.57
60 61 1.516161 CTAGCTGCTTGCACTGTTCA 58.484 50.000 7.79 0.00 45.94 3.18
61 62 0.801251 CCTAGCTGCTTGCACTGTTC 59.199 55.000 7.79 0.00 45.94 3.18
62 63 1.239968 GCCTAGCTGCTTGCACTGTT 61.240 55.000 7.79 0.00 45.94 3.16
63 64 1.673665 GCCTAGCTGCTTGCACTGT 60.674 57.895 7.79 0.00 45.94 3.55
64 65 2.747822 CGCCTAGCTGCTTGCACTG 61.748 63.158 19.44 3.45 45.94 3.66
65 66 2.435586 CGCCTAGCTGCTTGCACT 60.436 61.111 19.44 0.00 45.94 4.40
66 67 4.171416 GCGCCTAGCTGCTTGCAC 62.171 66.667 19.44 9.54 45.94 4.57
75 76 0.810426 GTTTGACCTAGGCGCCTAGC 60.810 60.000 44.85 34.99 43.35 3.42
76 77 0.824759 AGTTTGACCTAGGCGCCTAG 59.175 55.000 43.78 43.78 44.07 3.02
77 78 1.272807 AAGTTTGACCTAGGCGCCTA 58.727 50.000 33.24 33.24 0.00 3.93
78 79 0.400594 AAAGTTTGACCTAGGCGCCT 59.599 50.000 34.85 34.85 0.00 5.52
79 80 2.103537 TAAAGTTTGACCTAGGCGCC 57.896 50.000 21.89 21.89 0.00 6.53
80 81 5.353400 ACTTTATAAAGTTTGACCTAGGCGC 59.647 40.000 22.49 0.00 46.52 6.53
81 82 6.980051 ACTTTATAAAGTTTGACCTAGGCG 57.020 37.500 22.49 0.00 46.52 5.52
121 122 9.391006 TCCGTTTCTTTTTAGTCTGCATATAAT 57.609 29.630 0.00 0.00 0.00 1.28
140 141 1.806542 TGCAAATGCTCTCTCCGTTTC 59.193 47.619 6.97 0.00 42.66 2.78
143 144 0.322975 ACTGCAAATGCTCTCTCCGT 59.677 50.000 6.97 0.00 42.66 4.69
144 145 1.005340 GACTGCAAATGCTCTCTCCG 58.995 55.000 6.97 0.00 42.66 4.63
146 147 2.278854 GGAGACTGCAAATGCTCTCTC 58.721 52.381 18.43 17.98 40.28 3.20
147 148 1.065564 GGGAGACTGCAAATGCTCTCT 60.066 52.381 18.43 12.48 40.28 3.10
149 150 0.392193 CGGGAGACTGCAAATGCTCT 60.392 55.000 6.97 1.94 42.66 4.09
153 154 0.036010 AGGACGGGAGACTGCAAATG 60.036 55.000 0.00 0.00 41.93 2.32
155 156 0.895530 CTAGGACGGGAGACTGCAAA 59.104 55.000 0.00 0.00 41.93 3.68
159 160 0.256464 AGGTCTAGGACGGGAGACTG 59.744 60.000 2.37 0.00 41.56 3.51
190 191 4.404098 CCCGGCCCTGTACCACAC 62.404 72.222 0.00 0.00 0.00 3.82
191 192 4.966274 ACCCGGCCCTGTACCACA 62.966 66.667 0.00 0.00 0.00 4.17
217 218 1.335051 CGTCGAGAGAACAGTTGCTCA 60.335 52.381 11.44 0.09 45.01 4.26
223 224 1.575576 CCGTCCGTCGAGAGAACAGT 61.576 60.000 0.00 0.00 45.01 3.55
224 225 1.134901 CCGTCCGTCGAGAGAACAG 59.865 63.158 0.00 0.00 45.01 3.16
233 234 0.248377 GTTATCAGTCCCGTCCGTCG 60.248 60.000 0.00 0.00 39.52 5.12
236 237 1.065273 CGGTTATCAGTCCCGTCCG 59.935 63.158 0.00 0.00 37.00 4.79
244 245 1.120530 CTAGGCACCCGGTTATCAGT 58.879 55.000 0.00 0.00 0.00 3.41
245 246 1.068741 GTCTAGGCACCCGGTTATCAG 59.931 57.143 0.00 0.00 0.00 2.90
260 261 4.814771 GGATTTTGAATACCCGGTGTCTAG 59.185 45.833 0.00 0.00 0.00 2.43
263 264 3.349022 TGGATTTTGAATACCCGGTGTC 58.651 45.455 0.00 0.00 0.00 3.67
277 279 7.977789 GTTGGTTCCAACAATAATGGATTTT 57.022 32.000 24.34 0.00 45.99 1.82
303 305 4.002906 AGACCGTGATAGCAAAAGTTGA 57.997 40.909 0.00 0.00 0.00 3.18
304 306 4.749245 AAGACCGTGATAGCAAAAGTTG 57.251 40.909 0.00 0.00 0.00 3.16
316 318 5.654603 TCTAGCAAAATCTAAGACCGTGA 57.345 39.130 0.00 0.00 0.00 4.35
320 322 5.065346 GCTGGTTCTAGCAAAATCTAAGACC 59.935 44.000 3.39 0.00 43.17 3.85
328 330 2.171003 GTGGGCTGGTTCTAGCAAAAT 58.829 47.619 10.07 0.00 45.46 1.82
334 336 3.614870 GCAAAAATGTGGGCTGGTTCTAG 60.615 47.826 0.00 0.00 0.00 2.43
369 371 2.991190 ACAACAACGTCAGTTATAGCCG 59.009 45.455 6.09 0.00 38.79 5.52
422 424 2.982130 CACCCTTCCTCTCCGGTG 59.018 66.667 0.00 0.00 39.85 4.94
428 430 3.382832 CCGCGACACCCTTCCTCT 61.383 66.667 8.23 0.00 0.00 3.69
448 450 2.345991 TGGTAGCTCCACAACGCC 59.654 61.111 0.00 0.00 41.93 5.68
474 476 3.185299 TTTTTCGCCGCCTCCCTGA 62.185 57.895 0.00 0.00 0.00 3.86
478 480 1.081442 CAACTTTTTCGCCGCCTCC 60.081 57.895 0.00 0.00 0.00 4.30
480 482 0.887387 TAGCAACTTTTTCGCCGCCT 60.887 50.000 0.00 0.00 0.00 5.52
483 485 0.452122 CCGTAGCAACTTTTTCGCCG 60.452 55.000 0.00 0.00 0.00 6.46
635 637 7.487829 CCAAATCTGAAAAGAACACGAGAAAAA 59.512 33.333 0.00 0.00 0.00 1.94
645 647 5.069119 ACCCTTGTCCAAATCTGAAAAGAAC 59.931 40.000 0.00 0.00 0.00 3.01
658 660 3.842007 TCGTCTTTTACCCTTGTCCAA 57.158 42.857 0.00 0.00 0.00 3.53
661 663 4.320870 TCCAATCGTCTTTTACCCTTGTC 58.679 43.478 0.00 0.00 0.00 3.18
664 666 4.521639 GGTTTCCAATCGTCTTTTACCCTT 59.478 41.667 0.00 0.00 0.00 3.95
668 670 4.915667 GCTTGGTTTCCAATCGTCTTTTAC 59.084 41.667 1.58 0.00 43.07 2.01
669 671 4.022676 GGCTTGGTTTCCAATCGTCTTTTA 60.023 41.667 1.58 0.00 43.07 1.52
670 672 3.243737 GGCTTGGTTTCCAATCGTCTTTT 60.244 43.478 1.58 0.00 43.07 2.27
744 746 4.779696 ACAAATGTTTGGTCTTGGCATTT 58.220 34.783 9.98 0.00 42.34 2.32
752 754 9.974980 AATTATTAAACGACAAATGTTTGGTCT 57.025 25.926 9.98 0.00 42.34 3.85
829 831 9.971922 GGAAGAATTAATTTGATTCATGGTAGG 57.028 33.333 14.23 0.00 36.26 3.18
830 832 9.971922 GGGAAGAATTAATTTGATTCATGGTAG 57.028 33.333 14.23 0.00 36.26 3.18
831 833 9.486123 TGGGAAGAATTAATTTGATTCATGGTA 57.514 29.630 14.23 0.00 36.26 3.25
832 834 8.378115 TGGGAAGAATTAATTTGATTCATGGT 57.622 30.769 14.23 0.01 36.26 3.55
833 835 9.841295 ATTGGGAAGAATTAATTTGATTCATGG 57.159 29.630 14.23 0.00 36.26 3.66
853 855 6.789268 TGAGGAAGTCTTTTATTGATTGGGA 58.211 36.000 0.00 0.00 0.00 4.37
872 874 4.062293 CACTGTACGGTGAAAAATGAGGA 58.938 43.478 27.62 0.00 39.34 3.71
878 880 1.134037 AGCCCACTGTACGGTGAAAAA 60.134 47.619 32.04 0.00 39.34 1.94
888 890 4.266714 GTTGCCTTTTATAGCCCACTGTA 58.733 43.478 0.00 0.00 0.00 2.74
951 953 6.459573 GGTTTTTGACAACTGTATTGCTGAGA 60.460 38.462 0.00 0.00 0.00 3.27
954 956 4.440758 CGGTTTTTGACAACTGTATTGCTG 59.559 41.667 0.00 0.00 0.00 4.41
955 957 4.097286 ACGGTTTTTGACAACTGTATTGCT 59.903 37.500 0.00 0.00 43.23 3.91
957 959 5.454232 GTCACGGTTTTTGACAACTGTATTG 59.546 40.000 0.00 0.00 43.19 1.90
958 960 5.575019 GTCACGGTTTTTGACAACTGTATT 58.425 37.500 0.00 0.00 43.19 1.89
960 962 4.603231 GTCACGGTTTTTGACAACTGTA 57.397 40.909 0.00 0.00 43.19 2.74
961 963 3.481112 GTCACGGTTTTTGACAACTGT 57.519 42.857 0.00 0.00 45.47 3.55
991 1006 0.332293 TTGGCCTCCATGCTGATCAA 59.668 50.000 3.32 0.00 31.53 2.57
1018 1033 2.104451 AGATACAGGCTGCAAGGATCAG 59.896 50.000 15.89 0.00 34.79 2.90
1029 1044 3.009473 TGAAGGAAAGCAAGATACAGGCT 59.991 43.478 0.00 0.00 40.14 4.58
1035 1050 4.847198 TGCTGATGAAGGAAAGCAAGATA 58.153 39.130 0.00 0.00 42.42 1.98
1049 1064 1.804151 GCGTACCTTTGTTGCTGATGA 59.196 47.619 0.00 0.00 0.00 2.92
1050 1065 1.535028 TGCGTACCTTTGTTGCTGATG 59.465 47.619 0.00 0.00 0.00 3.07
1051 1066 1.890876 TGCGTACCTTTGTTGCTGAT 58.109 45.000 0.00 0.00 0.00 2.90
1105 1120 0.321671 TGCCGAGTTCCTCTTCCTTG 59.678 55.000 0.00 0.00 0.00 3.61
1121 1136 0.676736 TTTTGGTGTCCGGAAATGCC 59.323 50.000 5.23 6.82 0.00 4.40
1122 1137 1.067821 TGTTTTGGTGTCCGGAAATGC 59.932 47.619 5.23 0.00 0.00 3.56
1123 1138 3.444703 TTGTTTTGGTGTCCGGAAATG 57.555 42.857 5.23 0.00 0.00 2.32
1124 1139 3.195825 TGTTTGTTTTGGTGTCCGGAAAT 59.804 39.130 5.23 0.00 0.00 2.17
1125 1140 2.561419 TGTTTGTTTTGGTGTCCGGAAA 59.439 40.909 5.23 0.00 0.00 3.13
1126 1141 2.094649 GTGTTTGTTTTGGTGTCCGGAA 60.095 45.455 5.23 0.00 0.00 4.30
1127 1142 1.473278 GTGTTTGTTTTGGTGTCCGGA 59.527 47.619 0.00 0.00 0.00 5.14
1128 1143 1.470112 GGTGTTTGTTTTGGTGTCCGG 60.470 52.381 0.00 0.00 0.00 5.14
1129 1144 1.202582 TGGTGTTTGTTTTGGTGTCCG 59.797 47.619 0.00 0.00 0.00 4.79
1130 1145 2.418060 CCTGGTGTTTGTTTTGGTGTCC 60.418 50.000 0.00 0.00 0.00 4.02
1131 1146 2.494073 TCCTGGTGTTTGTTTTGGTGTC 59.506 45.455 0.00 0.00 0.00 3.67
1132 1147 2.530701 TCCTGGTGTTTGTTTTGGTGT 58.469 42.857 0.00 0.00 0.00 4.16
1133 1148 3.056179 AGTTCCTGGTGTTTGTTTTGGTG 60.056 43.478 0.00 0.00 0.00 4.17
1134 1149 3.169908 AGTTCCTGGTGTTTGTTTTGGT 58.830 40.909 0.00 0.00 0.00 3.67
1135 1150 3.885724 AGTTCCTGGTGTTTGTTTTGG 57.114 42.857 0.00 0.00 0.00 3.28
1136 1151 5.715070 TGTTAGTTCCTGGTGTTTGTTTTG 58.285 37.500 0.00 0.00 0.00 2.44
1191 1206 2.413765 GAGGAGATCCGACGGTGC 59.586 66.667 14.79 7.20 42.08 5.01
1217 1232 4.358841 TTCCCCGGCATGGTGGTG 62.359 66.667 0.00 0.00 35.15 4.17
1260 1275 0.321671 CACCTGTTCTCCACCGTCAT 59.678 55.000 0.00 0.00 0.00 3.06
1403 1418 2.125188 TTCGCATGCATCGGCTGA 60.125 55.556 19.57 0.00 41.91 4.26
1418 1433 1.050767 CGAACAAGACCGTCTCGTTC 58.949 55.000 18.66 18.66 34.10 3.95
1436 1451 1.625870 CATGCTCGAAGCGTACACG 59.374 57.895 0.00 0.00 46.26 4.49
1438 1453 0.245266 TTCCATGCTCGAAGCGTACA 59.755 50.000 0.00 0.00 46.26 2.90
1445 1460 2.408271 AGCTGATTTCCATGCTCGAA 57.592 45.000 0.00 0.00 0.00 3.71
1452 1467 1.687368 GGGCCTGAAGCTGATTTCCAT 60.687 52.381 0.84 0.00 43.05 3.41
1453 1468 0.323725 GGGCCTGAAGCTGATTTCCA 60.324 55.000 0.84 0.00 43.05 3.53
1455 1470 0.678048 ACGGGCCTGAAGCTGATTTC 60.678 55.000 21.41 0.00 43.05 2.17
1457 1472 1.078143 GACGGGCCTGAAGCTGATT 60.078 57.895 21.41 0.00 43.05 2.57
1481 1496 2.500509 CTATGGAGCAGTCGAGGAAC 57.499 55.000 0.00 0.00 0.00 3.62
1536 1551 1.064240 TGGCTACCGGAGTATCACTGA 60.064 52.381 9.46 0.00 36.25 3.41
1537 1552 1.399714 TGGCTACCGGAGTATCACTG 58.600 55.000 9.46 0.00 36.25 3.66
1540 1555 0.679505 GCATGGCTACCGGAGTATCA 59.320 55.000 9.46 0.00 36.25 2.15
1541 1556 0.679505 TGCATGGCTACCGGAGTATC 59.320 55.000 9.46 0.00 0.00 2.24
1567 1865 0.521735 GGTGCCACTTTCTAAAGCGG 59.478 55.000 5.34 5.34 40.38 5.52
1568 1866 1.234821 TGGTGCCACTTTCTAAAGCG 58.765 50.000 2.37 0.00 39.63 4.68
1569 1867 2.360801 TGTTGGTGCCACTTTCTAAAGC 59.639 45.455 2.37 0.00 39.63 3.51
1570 1868 4.520492 AGATGTTGGTGCCACTTTCTAAAG 59.480 41.667 0.00 0.90 41.73 1.85
1574 1872 2.624838 CAAGATGTTGGTGCCACTTTCT 59.375 45.455 0.00 0.00 0.00 2.52
1575 1873 2.362077 ACAAGATGTTGGTGCCACTTTC 59.638 45.455 7.59 0.00 38.07 2.62
1576 1874 2.387757 ACAAGATGTTGGTGCCACTTT 58.612 42.857 7.59 0.00 38.07 2.66
1577 1875 2.071778 ACAAGATGTTGGTGCCACTT 57.928 45.000 7.59 0.00 38.07 3.16
1579 1877 2.742774 GAAACAAGATGTTGGTGCCAC 58.257 47.619 7.59 0.00 40.14 5.01
1580 1878 1.336440 CGAAACAAGATGTTGGTGCCA 59.664 47.619 7.59 0.00 40.14 4.92
1581 1879 1.336755 ACGAAACAAGATGTTGGTGCC 59.663 47.619 7.59 0.00 40.14 5.01
1583 1881 4.027572 ACAACGAAACAAGATGTTGGTG 57.972 40.909 7.59 0.00 44.47 4.17
1585 1883 3.723764 CGAACAACGAAACAAGATGTTGG 59.276 43.478 7.59 0.00 44.47 3.77
1586 1884 3.177643 GCGAACAACGAAACAAGATGTTG 59.822 43.478 0.13 0.13 45.39 3.33
1587 1885 3.064820 AGCGAACAACGAAACAAGATGTT 59.935 39.130 0.00 0.00 45.77 2.71
1589 1887 3.059597 AGAGCGAACAACGAAACAAGATG 60.060 43.478 0.00 0.00 45.77 2.90
1590 1888 3.131396 AGAGCGAACAACGAAACAAGAT 58.869 40.909 0.00 0.00 45.77 2.40
1591 1889 2.538449 GAGAGCGAACAACGAAACAAGA 59.462 45.455 0.00 0.00 45.77 3.02
1592 1890 2.656632 CGAGAGCGAACAACGAAACAAG 60.657 50.000 0.00 0.00 45.77 3.16
1593 1891 1.256895 CGAGAGCGAACAACGAAACAA 59.743 47.619 0.00 0.00 45.77 2.83
1595 1893 3.615763 CGAGAGCGAACAACGAAAC 57.384 52.632 0.00 0.00 45.77 2.78
1609 1990 4.569023 CGGTATGCAGCGGCGAGA 62.569 66.667 12.98 0.00 45.35 4.04
1630 2011 1.606668 TGGTCATCGCTTGGTTTTGAC 59.393 47.619 0.00 0.00 36.76 3.18
1652 2034 2.848678 TCTACTACCTGGCCATGACT 57.151 50.000 15.66 0.00 0.00 3.41
1666 2048 0.394352 CCGGCTGGGCAATTTCTACT 60.394 55.000 2.57 0.00 0.00 2.57
1677 2059 1.101049 ACATTTTATCGCCGGCTGGG 61.101 55.000 26.68 9.50 39.58 4.45
1683 2065 6.810888 ATGAAATGAAACATTTTATCGCCG 57.189 33.333 10.35 0.00 0.00 6.46
1699 2081 8.400186 AGCCTTTGTTTTCTCAAAAATGAAATG 58.600 29.630 0.00 0.00 36.77 2.32
1700 2082 8.510243 AGCCTTTGTTTTCTCAAAAATGAAAT 57.490 26.923 0.00 0.00 36.77 2.17
1701 2083 7.920160 AGCCTTTGTTTTCTCAAAAATGAAA 57.080 28.000 0.00 0.00 36.77 2.69
1704 2086 7.075674 ACAAGCCTTTGTTTTCTCAAAAATG 57.924 32.000 0.00 0.00 45.01 2.32
1705 2087 8.962884 ATACAAGCCTTTGTTTTCTCAAAAAT 57.037 26.923 0.00 0.00 45.01 1.82
1721 2105 2.311542 TGTGATCCCCAAATACAAGCCT 59.688 45.455 0.00 0.00 0.00 4.58
1722 2106 2.733956 TGTGATCCCCAAATACAAGCC 58.266 47.619 0.00 0.00 0.00 4.35
1736 2120 4.788100 GCATGTACGATTGTGTTTGTGATC 59.212 41.667 0.00 0.00 0.00 2.92
1744 2128 4.153296 TGATTTTCGCATGTACGATTGTGT 59.847 37.500 0.00 0.00 42.54 3.72
1751 2135 2.006888 ACCCTGATTTTCGCATGTACG 58.993 47.619 0.00 0.00 0.00 3.67
1754 2138 1.463674 GGACCCTGATTTTCGCATGT 58.536 50.000 0.00 0.00 0.00 3.21
1755 2139 0.378257 CGGACCCTGATTTTCGCATG 59.622 55.000 0.00 0.00 0.00 4.06
1757 2141 0.391130 CTCGGACCCTGATTTTCGCA 60.391 55.000 0.00 0.00 0.00 5.10
1759 2143 0.391130 TGCTCGGACCCTGATTTTCG 60.391 55.000 0.00 0.00 0.00 3.46
1765 2149 1.109920 GCTATCTGCTCGGACCCTGA 61.110 60.000 0.00 0.00 38.95 3.86
1831 2974 4.827087 ACGAGCAGCGAGGCATGG 62.827 66.667 5.99 0.00 44.57 3.66
1832 2975 3.260483 GACGAGCAGCGAGGCATG 61.260 66.667 5.99 0.00 44.57 4.06
1833 2976 4.862092 CGACGAGCAGCGAGGCAT 62.862 66.667 5.99 0.00 44.57 4.40
2041 3285 1.152030 TGGAGACCTCTGCCTTGGT 60.152 57.895 0.00 0.00 39.60 3.67
2158 3402 2.943036 AACGTTTACTGGACATGGGT 57.057 45.000 0.00 0.00 0.00 4.51
2170 3414 5.292834 TCACACCGTTACATGAAAACGTTTA 59.707 36.000 25.21 0.00 46.26 2.01
2346 3597 1.168714 CACCACTTTGAAGGCTAGGC 58.831 55.000 8.55 8.55 0.00 3.93
2383 3635 2.737252 CCGAGTTCCTAGACTTGTTTGC 59.263 50.000 0.00 0.00 30.44 3.68
2384 3636 2.737252 GCCGAGTTCCTAGACTTGTTTG 59.263 50.000 0.00 0.00 30.44 2.93
2393 3645 1.459592 CGTTGTTTGCCGAGTTCCTAG 59.540 52.381 0.00 0.00 0.00 3.02
2404 3656 0.521735 GGTGGATCTCCGTTGTTTGC 59.478 55.000 0.00 0.00 39.43 3.68
2413 3665 0.106519 CATGGTTGGGGTGGATCTCC 60.107 60.000 0.00 0.00 37.17 3.71
2443 3695 2.290323 CCTTTCAGACGGGACCATCTTT 60.290 50.000 0.00 0.00 0.00 2.52
2459 3711 8.455682 CCTCTAGTCAACTATATCGATCCTTTC 58.544 40.741 0.00 0.00 0.00 2.62
2460 3712 7.394923 CCCTCTAGTCAACTATATCGATCCTTT 59.605 40.741 0.00 0.00 0.00 3.11
2461 3713 6.887545 CCCTCTAGTCAACTATATCGATCCTT 59.112 42.308 0.00 0.00 0.00 3.36
2462 3714 6.419791 CCCTCTAGTCAACTATATCGATCCT 58.580 44.000 0.00 0.00 0.00 3.24
2463 3715 5.591067 CCCCTCTAGTCAACTATATCGATCC 59.409 48.000 0.00 0.00 0.00 3.36
2464 3716 5.591067 CCCCCTCTAGTCAACTATATCGATC 59.409 48.000 0.00 0.00 0.00 3.69
2465 3717 5.253330 TCCCCCTCTAGTCAACTATATCGAT 59.747 44.000 2.16 2.16 0.00 3.59
2466 3718 4.600547 TCCCCCTCTAGTCAACTATATCGA 59.399 45.833 0.00 0.00 0.00 3.59
2467 3719 4.919793 TCCCCCTCTAGTCAACTATATCG 58.080 47.826 0.00 0.00 0.00 2.92
2468 3720 5.265989 CCTCCCCCTCTAGTCAACTATATC 58.734 50.000 0.00 0.00 0.00 1.63
2469 3721 4.046103 CCCTCCCCCTCTAGTCAACTATAT 59.954 50.000 0.00 0.00 0.00 0.86
2470 3722 3.401683 CCCTCCCCCTCTAGTCAACTATA 59.598 52.174 0.00 0.00 0.00 1.31
2471 3723 2.180308 CCCTCCCCCTCTAGTCAACTAT 59.820 54.545 0.00 0.00 0.00 2.12
2472 3724 1.574339 CCCTCCCCCTCTAGTCAACTA 59.426 57.143 0.00 0.00 0.00 2.24
2473 3725 0.340208 CCCTCCCCCTCTAGTCAACT 59.660 60.000 0.00 0.00 0.00 3.16
2474 3726 0.042881 ACCCTCCCCCTCTAGTCAAC 59.957 60.000 0.00 0.00 0.00 3.18
2475 3727 0.042731 CACCCTCCCCCTCTAGTCAA 59.957 60.000 0.00 0.00 0.00 3.18
2476 3728 0.854039 TCACCCTCCCCCTCTAGTCA 60.854 60.000 0.00 0.00 0.00 3.41
2477 3729 0.338814 TTCACCCTCCCCCTCTAGTC 59.661 60.000 0.00 0.00 0.00 2.59
2478 3730 1.027815 ATTCACCCTCCCCCTCTAGT 58.972 55.000 0.00 0.00 0.00 2.57
2479 3731 2.493687 CCTATTCACCCTCCCCCTCTAG 60.494 59.091 0.00 0.00 0.00 2.43
2480 3732 1.508185 CCTATTCACCCTCCCCCTCTA 59.492 57.143 0.00 0.00 0.00 2.43
2481 3733 0.269173 CCTATTCACCCTCCCCCTCT 59.731 60.000 0.00 0.00 0.00 3.69
2482 3734 1.419720 GCCTATTCACCCTCCCCCTC 61.420 65.000 0.00 0.00 0.00 4.30
2483 3735 1.386057 GCCTATTCACCCTCCCCCT 60.386 63.158 0.00 0.00 0.00 4.79
2484 3736 1.286305 TTGCCTATTCACCCTCCCCC 61.286 60.000 0.00 0.00 0.00 5.40
2485 3737 0.106669 GTTGCCTATTCACCCTCCCC 60.107 60.000 0.00 0.00 0.00 4.81
2486 3738 0.919710 AGTTGCCTATTCACCCTCCC 59.080 55.000 0.00 0.00 0.00 4.30
2487 3739 3.054655 TGTTAGTTGCCTATTCACCCTCC 60.055 47.826 0.00 0.00 0.00 4.30
2488 3740 4.216411 TGTTAGTTGCCTATTCACCCTC 57.784 45.455 0.00 0.00 0.00 4.30
2489 3741 4.862641 ATGTTAGTTGCCTATTCACCCT 57.137 40.909 0.00 0.00 0.00 4.34
2490 3742 5.914898 AAATGTTAGTTGCCTATTCACCC 57.085 39.130 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.