Multiple sequence alignment - TraesCS1D01G301500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G301500 chr1D 100.000 3053 0 0 1 3053 399264876 399261824 0.000000e+00 5638.0
1 TraesCS1D01G301500 chr1D 79.945 1092 191 21 991 2065 464030119 464029039 0.000000e+00 778.0
2 TraesCS1D01G301500 chr1D 79.133 623 84 20 2403 2994 119408315 119407708 3.690000e-104 388.0
3 TraesCS1D01G301500 chr1A 90.506 2570 145 26 512 3051 496090578 496088078 0.000000e+00 3302.0
4 TraesCS1D01G301500 chr1A 92.857 84 6 0 1 84 496117785 496117702 4.130000e-24 122.0
5 TraesCS1D01G301500 chr1A 90.244 82 8 0 89 170 496090654 496090573 1.160000e-19 108.0
6 TraesCS1D01G301500 chr6D 87.929 1458 144 17 801 2238 14509826 14511271 0.000000e+00 1688.0
7 TraesCS1D01G301500 chr6D 88.576 1383 128 18 877 2238 14722176 14720803 0.000000e+00 1652.0
8 TraesCS1D01G301500 chr6D 90.476 84 6 2 394 477 20237252 20237333 3.220000e-20 110.0
9 TraesCS1D01G301500 chr6A 86.475 695 75 7 943 1626 15875918 15875232 0.000000e+00 745.0
10 TraesCS1D01G301500 chr6A 86.116 605 63 10 1654 2238 15875236 15874633 1.540000e-177 632.0
11 TraesCS1D01G301500 chr6A 82.216 343 58 2 964 1304 15712248 15712589 2.980000e-75 292.0
12 TraesCS1D01G301500 chr6A 88.421 95 7 3 401 495 20233023 20233113 8.950000e-21 111.0
13 TraesCS1D01G301500 chr1B 79.500 1000 167 22 1073 2065 640074581 640073613 0.000000e+00 676.0
14 TraesCS1D01G301500 chr1B 80.048 421 53 11 2577 2993 182201979 182201586 1.790000e-72 283.0
15 TraesCS1D01G301500 chr6B 91.322 484 38 3 1144 1625 26728763 26728282 0.000000e+00 658.0
16 TraesCS1D01G301500 chr7B 89.646 367 23 7 175 526 12189481 12189847 1.290000e-123 453.0
17 TraesCS1D01G301500 chr7B 80.597 134 22 3 2392 2523 467448601 467448732 1.940000e-17 100.0
18 TraesCS1D01G301500 chr5D 79.160 667 97 21 2396 3028 254632795 254632137 1.010000e-114 424.0
19 TraesCS1D01G301500 chr5D 77.743 319 56 13 2396 2709 197370131 197370439 6.720000e-42 182.0
20 TraesCS1D01G301500 chr4D 89.595 346 16 2 168 502 397502588 397502252 3.640000e-114 422.0
21 TraesCS1D01G301500 chr4D 81.022 137 22 4 2400 2534 400784502 400784636 4.160000e-19 106.0
22 TraesCS1D01G301500 chr5B 79.027 658 95 23 2396 3019 287811281 287811929 7.880000e-111 411.0
23 TraesCS1D01G301500 chr5B 81.092 238 31 8 168 392 582185310 582185074 8.700000e-41 178.0
24 TraesCS1D01G301500 chr5A 81.568 472 59 13 2582 3028 338178537 338178069 6.220000e-97 364.0
25 TraesCS1D01G301500 chr7D 77.188 377 73 12 2587 2956 590814111 590813741 1.110000e-49 207.0
26 TraesCS1D01G301500 chr7D 88.000 75 9 0 2396 2470 213125548 213125622 4.190000e-14 89.8
27 TraesCS1D01G301500 chr2A 88.000 75 9 0 2396 2470 664077849 664077775 4.190000e-14 89.8
28 TraesCS1D01G301500 chr3D 90.909 66 5 1 2600 2665 105148573 105148637 1.510000e-13 87.9
29 TraesCS1D01G301500 chr4B 86.667 75 10 0 2396 2470 341492419 341492493 1.950000e-12 84.2
30 TraesCS1D01G301500 chrUn 85.526 76 8 3 2396 2470 282637094 282637021 3.260000e-10 76.8
31 TraesCS1D01G301500 chrUn 85.526 76 8 3 2396 2470 290484864 290484937 3.260000e-10 76.8
32 TraesCS1D01G301500 chrUn 80.000 105 18 2 2417 2520 286006174 286006072 1.170000e-09 75.0
33 TraesCS1D01G301500 chr2B 100.000 28 0 0 3026 3053 174822491 174822464 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G301500 chr1D 399261824 399264876 3052 True 5638.0 5638 100.0000 1 3053 1 chr1D.!!$R2 3052
1 TraesCS1D01G301500 chr1D 464029039 464030119 1080 True 778.0 778 79.9450 991 2065 1 chr1D.!!$R3 1074
2 TraesCS1D01G301500 chr1D 119407708 119408315 607 True 388.0 388 79.1330 2403 2994 1 chr1D.!!$R1 591
3 TraesCS1D01G301500 chr1A 496088078 496090654 2576 True 1705.0 3302 90.3750 89 3051 2 chr1A.!!$R2 2962
4 TraesCS1D01G301500 chr6D 14509826 14511271 1445 False 1688.0 1688 87.9290 801 2238 1 chr6D.!!$F1 1437
5 TraesCS1D01G301500 chr6D 14720803 14722176 1373 True 1652.0 1652 88.5760 877 2238 1 chr6D.!!$R1 1361
6 TraesCS1D01G301500 chr6A 15874633 15875918 1285 True 688.5 745 86.2955 943 2238 2 chr6A.!!$R1 1295
7 TraesCS1D01G301500 chr1B 640073613 640074581 968 True 676.0 676 79.5000 1073 2065 1 chr1B.!!$R2 992
8 TraesCS1D01G301500 chr5D 254632137 254632795 658 True 424.0 424 79.1600 2396 3028 1 chr5D.!!$R1 632
9 TraesCS1D01G301500 chr5B 287811281 287811929 648 False 411.0 411 79.0270 2396 3019 1 chr5B.!!$F1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 661 0.034476 GACGACCGGGAAAGTTCCTT 59.966 55.0 6.32 0.0 46.72 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2570 2645 0.040425 ATGTTTGAAGTTGTCGCGCC 60.04 50.0 0.0 0.0 0.0 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.647297 GCACCAGAAGCCAGCAAC 59.353 61.111 0.00 0.00 0.00 4.17
23 24 2.924105 GCACCAGAAGCCAGCAACC 61.924 63.158 0.00 0.00 0.00 3.77
24 25 2.116125 ACCAGAAGCCAGCAACCC 59.884 61.111 0.00 0.00 0.00 4.11
25 26 2.115910 CCAGAAGCCAGCAACCCA 59.884 61.111 0.00 0.00 0.00 4.51
26 27 1.304713 CCAGAAGCCAGCAACCCAT 60.305 57.895 0.00 0.00 0.00 4.00
27 28 1.601419 CCAGAAGCCAGCAACCCATG 61.601 60.000 0.00 0.00 0.00 3.66
28 29 1.304713 AGAAGCCAGCAACCCATGG 60.305 57.895 4.14 4.14 39.73 3.66
32 33 2.364579 CCAGCAACCCATGGCCAT 60.365 61.111 14.09 14.09 0.00 4.40
33 34 2.727392 CCAGCAACCCATGGCCATG 61.727 63.158 34.82 34.82 38.51 3.66
41 42 4.203245 CATGGCCATGGGGATTCC 57.797 61.111 34.31 6.10 35.24 3.01
42 43 1.545211 CATGGCCATGGGGATTCCT 59.455 57.895 34.31 0.00 35.24 3.36
43 44 0.830444 CATGGCCATGGGGATTCCTG 60.830 60.000 34.31 9.56 35.24 3.86
44 45 2.522680 GGCCATGGGGATTCCTGC 60.523 66.667 15.13 0.00 35.59 4.85
45 46 2.279743 GCCATGGGGATTCCTGCA 59.720 61.111 15.13 0.00 35.59 4.41
46 47 1.152398 GCCATGGGGATTCCTGCAT 60.152 57.895 15.13 0.00 35.59 3.96
47 48 1.183676 GCCATGGGGATTCCTGCATC 61.184 60.000 15.13 0.00 35.59 3.91
48 49 0.541296 CCATGGGGATTCCTGCATCC 60.541 60.000 2.85 0.00 42.09 3.51
49 50 0.892358 CATGGGGATTCCTGCATCCG 60.892 60.000 2.01 0.00 43.58 4.18
50 51 2.595754 GGGGATTCCTGCATCCGC 60.596 66.667 5.48 5.48 45.94 5.54
66 67 3.127533 GCATCGGCAGGTGGTGTC 61.128 66.667 0.00 0.00 40.72 3.67
71 72 3.890674 GGCAGGTGGTGTCGAATC 58.109 61.111 0.00 0.00 0.00 2.52
72 73 1.296715 GGCAGGTGGTGTCGAATCT 59.703 57.895 0.00 0.00 0.00 2.40
73 74 0.321653 GGCAGGTGGTGTCGAATCTT 60.322 55.000 0.00 0.00 0.00 2.40
74 75 1.523758 GCAGGTGGTGTCGAATCTTT 58.476 50.000 0.00 0.00 0.00 2.52
75 76 1.197721 GCAGGTGGTGTCGAATCTTTG 59.802 52.381 0.00 0.00 0.00 2.77
76 77 1.197721 CAGGTGGTGTCGAATCTTTGC 59.802 52.381 0.00 0.00 0.00 3.68
77 78 1.202758 AGGTGGTGTCGAATCTTTGCA 60.203 47.619 0.00 0.00 0.00 4.08
78 79 1.812571 GGTGGTGTCGAATCTTTGCAT 59.187 47.619 0.00 0.00 0.00 3.96
79 80 2.228822 GGTGGTGTCGAATCTTTGCATT 59.771 45.455 0.00 0.00 0.00 3.56
80 81 3.236816 GTGGTGTCGAATCTTTGCATTG 58.763 45.455 0.00 0.00 0.00 2.82
81 82 2.228582 TGGTGTCGAATCTTTGCATTGG 59.771 45.455 0.00 0.00 0.00 3.16
82 83 2.228822 GGTGTCGAATCTTTGCATTGGT 59.771 45.455 0.00 0.00 0.00 3.67
83 84 3.438781 GGTGTCGAATCTTTGCATTGGTA 59.561 43.478 0.00 0.00 0.00 3.25
84 85 4.096382 GGTGTCGAATCTTTGCATTGGTAT 59.904 41.667 0.00 0.00 0.00 2.73
85 86 5.295787 GGTGTCGAATCTTTGCATTGGTATA 59.704 40.000 0.00 0.00 0.00 1.47
86 87 6.017109 GGTGTCGAATCTTTGCATTGGTATAT 60.017 38.462 0.00 0.00 0.00 0.86
87 88 7.172532 GGTGTCGAATCTTTGCATTGGTATATA 59.827 37.037 0.00 0.00 0.00 0.86
116 117 5.067283 TCGTAGAAGAGCATGTATACTGCAA 59.933 40.000 21.50 0.00 42.15 4.08
121 122 7.331026 AGAAGAGCATGTATACTGCAAAAGTA 58.669 34.615 21.50 0.00 45.47 2.24
124 125 7.752695 AGAGCATGTATACTGCAAAAGTAAAC 58.247 34.615 21.50 7.82 44.57 2.01
157 158 3.885297 CTCCGGATTAGTTGGATTTGCAT 59.115 43.478 3.57 0.00 0.00 3.96
163 164 6.404184 CGGATTAGTTGGATTTGCATGTTACA 60.404 38.462 0.00 0.00 0.00 2.41
164 165 6.751888 GGATTAGTTGGATTTGCATGTTACAC 59.248 38.462 0.00 0.00 0.00 2.90
165 166 6.892658 TTAGTTGGATTTGCATGTTACACT 57.107 33.333 0.00 0.00 0.00 3.55
166 167 7.987750 TTAGTTGGATTTGCATGTTACACTA 57.012 32.000 0.00 0.00 0.00 2.74
167 168 6.892658 AGTTGGATTTGCATGTTACACTAA 57.107 33.333 0.00 0.00 0.00 2.24
168 169 6.913170 AGTTGGATTTGCATGTTACACTAAG 58.087 36.000 0.00 0.00 0.00 2.18
169 170 5.895636 TGGATTTGCATGTTACACTAAGG 57.104 39.130 0.00 0.00 0.00 2.69
170 171 4.704540 TGGATTTGCATGTTACACTAAGGG 59.295 41.667 0.00 0.00 0.00 3.95
171 172 4.440112 GGATTTGCATGTTACACTAAGGGC 60.440 45.833 0.00 0.00 0.00 5.19
172 173 2.869101 TGCATGTTACACTAAGGGCA 57.131 45.000 0.00 0.00 0.00 5.36
173 174 3.364460 TGCATGTTACACTAAGGGCAT 57.636 42.857 0.00 0.00 0.00 4.40
174 175 3.016031 TGCATGTTACACTAAGGGCATG 58.984 45.455 0.00 0.00 37.39 4.06
175 176 3.016736 GCATGTTACACTAAGGGCATGT 58.983 45.455 0.00 0.00 36.88 3.21
176 177 4.196193 GCATGTTACACTAAGGGCATGTA 58.804 43.478 0.00 0.00 36.88 2.29
177 178 4.035208 GCATGTTACACTAAGGGCATGTAC 59.965 45.833 0.00 0.00 36.88 2.90
178 179 4.893829 TGTTACACTAAGGGCATGTACA 57.106 40.909 0.00 0.00 0.00 2.90
179 180 5.230323 TGTTACACTAAGGGCATGTACAA 57.770 39.130 0.00 0.00 0.00 2.41
180 181 4.998672 TGTTACACTAAGGGCATGTACAAC 59.001 41.667 0.00 0.00 0.00 3.32
181 182 3.780804 ACACTAAGGGCATGTACAACA 57.219 42.857 0.00 0.00 0.00 3.33
182 183 4.093472 ACACTAAGGGCATGTACAACAA 57.907 40.909 0.00 0.00 0.00 2.83
183 184 4.662278 ACACTAAGGGCATGTACAACAAT 58.338 39.130 0.00 0.00 0.00 2.71
184 185 4.458989 ACACTAAGGGCATGTACAACAATG 59.541 41.667 0.00 0.00 0.00 2.82
185 186 4.458989 CACTAAGGGCATGTACAACAATGT 59.541 41.667 0.00 0.00 43.74 2.71
186 187 4.700213 ACTAAGGGCATGTACAACAATGTC 59.300 41.667 0.00 0.00 41.05 3.06
187 188 2.446435 AGGGCATGTACAACAATGTCC 58.554 47.619 9.39 9.39 41.05 4.02
188 189 2.166829 GGGCATGTACAACAATGTCCA 58.833 47.619 12.01 0.00 41.05 4.02
189 190 2.164219 GGGCATGTACAACAATGTCCAG 59.836 50.000 12.01 0.00 41.05 3.86
190 191 2.819608 GGCATGTACAACAATGTCCAGT 59.180 45.455 0.00 0.00 41.05 4.00
191 192 3.119849 GGCATGTACAACAATGTCCAGTC 60.120 47.826 0.00 0.00 41.05 3.51
192 193 3.501828 GCATGTACAACAATGTCCAGTCA 59.498 43.478 0.00 0.00 41.05 3.41
193 194 4.378770 GCATGTACAACAATGTCCAGTCAG 60.379 45.833 0.00 0.00 41.05 3.51
194 195 3.138304 TGTACAACAATGTCCAGTCAGC 58.862 45.455 0.00 0.00 41.05 4.26
195 196 2.645838 ACAACAATGTCCAGTCAGCT 57.354 45.000 0.00 0.00 33.41 4.24
196 197 2.498167 ACAACAATGTCCAGTCAGCTC 58.502 47.619 0.00 0.00 33.41 4.09
197 198 2.105477 ACAACAATGTCCAGTCAGCTCT 59.895 45.455 0.00 0.00 33.41 4.09
198 199 2.740981 CAACAATGTCCAGTCAGCTCTC 59.259 50.000 0.00 0.00 0.00 3.20
199 200 2.255406 ACAATGTCCAGTCAGCTCTCT 58.745 47.619 0.00 0.00 0.00 3.10
200 201 2.028294 ACAATGTCCAGTCAGCTCTCTG 60.028 50.000 7.48 7.48 41.67 3.35
206 207 0.536260 CAGTCAGCTCTCTGGAAGGG 59.464 60.000 6.74 0.00 40.69 3.95
207 208 0.411452 AGTCAGCTCTCTGGAAGGGA 59.589 55.000 0.00 0.00 44.94 4.20
214 215 1.645710 TCTCTGGAAGGGAGGACAAC 58.354 55.000 0.00 0.00 39.68 3.32
215 216 1.150135 TCTCTGGAAGGGAGGACAACT 59.850 52.381 0.00 0.00 39.68 3.16
216 217 2.382305 TCTCTGGAAGGGAGGACAACTA 59.618 50.000 0.00 0.00 39.68 2.24
217 218 2.763448 CTCTGGAAGGGAGGACAACTAG 59.237 54.545 0.00 0.00 35.24 2.57
218 219 1.834263 CTGGAAGGGAGGACAACTAGG 59.166 57.143 0.00 0.00 0.00 3.02
219 220 1.435563 TGGAAGGGAGGACAACTAGGA 59.564 52.381 0.00 0.00 0.00 2.94
220 221 2.045885 TGGAAGGGAGGACAACTAGGAT 59.954 50.000 0.00 0.00 0.00 3.24
221 222 3.116174 GGAAGGGAGGACAACTAGGATT 58.884 50.000 0.00 0.00 0.00 3.01
222 223 3.523972 GGAAGGGAGGACAACTAGGATTT 59.476 47.826 0.00 0.00 0.00 2.17
223 224 4.018324 GGAAGGGAGGACAACTAGGATTTT 60.018 45.833 0.00 0.00 0.00 1.82
224 225 5.191124 GGAAGGGAGGACAACTAGGATTTTA 59.809 44.000 0.00 0.00 0.00 1.52
225 226 5.959583 AGGGAGGACAACTAGGATTTTAG 57.040 43.478 0.00 0.00 0.00 1.85
226 227 5.600749 AGGGAGGACAACTAGGATTTTAGA 58.399 41.667 0.00 0.00 0.00 2.10
227 228 6.030082 AGGGAGGACAACTAGGATTTTAGAA 58.970 40.000 0.00 0.00 0.00 2.10
228 229 6.157123 AGGGAGGACAACTAGGATTTTAGAAG 59.843 42.308 0.00 0.00 0.00 2.85
229 230 6.156429 GGGAGGACAACTAGGATTTTAGAAGA 59.844 42.308 0.00 0.00 0.00 2.87
230 231 7.147461 GGGAGGACAACTAGGATTTTAGAAGAT 60.147 40.741 0.00 0.00 0.00 2.40
231 232 7.713073 GGAGGACAACTAGGATTTTAGAAGATG 59.287 40.741 0.00 0.00 0.00 2.90
232 233 8.152023 AGGACAACTAGGATTTTAGAAGATGT 57.848 34.615 0.00 0.00 0.00 3.06
233 234 8.043710 AGGACAACTAGGATTTTAGAAGATGTG 58.956 37.037 0.00 0.00 0.00 3.21
234 235 7.281100 GGACAACTAGGATTTTAGAAGATGTGG 59.719 40.741 0.00 0.00 0.00 4.17
235 236 7.918076 ACAACTAGGATTTTAGAAGATGTGGA 58.082 34.615 0.00 0.00 0.00 4.02
236 237 8.383175 ACAACTAGGATTTTAGAAGATGTGGAA 58.617 33.333 0.00 0.00 0.00 3.53
237 238 8.887717 CAACTAGGATTTTAGAAGATGTGGAAG 58.112 37.037 0.00 0.00 0.00 3.46
238 239 8.380742 ACTAGGATTTTAGAAGATGTGGAAGA 57.619 34.615 0.00 0.00 0.00 2.87
239 240 8.482128 ACTAGGATTTTAGAAGATGTGGAAGAG 58.518 37.037 0.00 0.00 0.00 2.85
240 241 7.502060 AGGATTTTAGAAGATGTGGAAGAGA 57.498 36.000 0.00 0.00 0.00 3.10
241 242 7.563906 AGGATTTTAGAAGATGTGGAAGAGAG 58.436 38.462 0.00 0.00 0.00 3.20
242 243 7.401493 AGGATTTTAGAAGATGTGGAAGAGAGA 59.599 37.037 0.00 0.00 0.00 3.10
243 244 7.710475 GGATTTTAGAAGATGTGGAAGAGAGAG 59.290 40.741 0.00 0.00 0.00 3.20
244 245 7.782897 TTTTAGAAGATGTGGAAGAGAGAGA 57.217 36.000 0.00 0.00 0.00 3.10
245 246 7.782897 TTTAGAAGATGTGGAAGAGAGAGAA 57.217 36.000 0.00 0.00 0.00 2.87
246 247 7.782897 TTAGAAGATGTGGAAGAGAGAGAAA 57.217 36.000 0.00 0.00 0.00 2.52
247 248 6.036577 AGAAGATGTGGAAGAGAGAGAAAC 57.963 41.667 0.00 0.00 0.00 2.78
248 249 5.541868 AGAAGATGTGGAAGAGAGAGAAACA 59.458 40.000 0.00 0.00 0.00 2.83
249 250 5.815233 AGATGTGGAAGAGAGAGAAACAA 57.185 39.130 0.00 0.00 0.00 2.83
250 251 6.371595 AGATGTGGAAGAGAGAGAAACAAT 57.628 37.500 0.00 0.00 0.00 2.71
251 252 6.405538 AGATGTGGAAGAGAGAGAAACAATC 58.594 40.000 0.00 0.00 0.00 2.67
252 253 5.815233 TGTGGAAGAGAGAGAAACAATCT 57.185 39.130 0.00 0.00 42.61 2.40
253 254 5.545588 TGTGGAAGAGAGAGAAACAATCTG 58.454 41.667 0.00 0.00 38.96 2.90
254 255 5.070981 TGTGGAAGAGAGAGAAACAATCTGT 59.929 40.000 0.00 0.00 38.96 3.41
255 256 5.637387 GTGGAAGAGAGAGAAACAATCTGTC 59.363 44.000 0.00 0.00 46.30 3.51
261 262 5.312120 GAGAGAAACAATCTGTCGGTAGA 57.688 43.478 0.00 0.00 38.53 2.59
262 263 5.710984 GAGAGAAACAATCTGTCGGTAGAA 58.289 41.667 0.00 0.00 38.53 2.10
263 264 6.287589 AGAGAAACAATCTGTCGGTAGAAT 57.712 37.500 0.00 0.00 38.96 2.40
264 265 6.702329 AGAGAAACAATCTGTCGGTAGAATT 58.298 36.000 0.00 0.00 38.96 2.17
265 266 7.837863 AGAGAAACAATCTGTCGGTAGAATTA 58.162 34.615 0.00 0.00 38.96 1.40
266 267 7.760340 AGAGAAACAATCTGTCGGTAGAATTAC 59.240 37.037 0.00 0.00 38.96 1.89
267 268 6.817140 AGAAACAATCTGTCGGTAGAATTACC 59.183 38.462 0.00 0.00 40.57 2.85
268 269 7.526526 AGAAACAATCTGTCGGTAGAATTACCA 60.527 37.037 4.76 0.00 42.37 3.25
280 281 6.750775 GTAGAATTACCAACGATCTGTAGC 57.249 41.667 0.00 0.00 0.00 3.58
281 282 4.694339 AGAATTACCAACGATCTGTAGCC 58.306 43.478 0.00 0.00 0.00 3.93
282 283 2.973694 TTACCAACGATCTGTAGCCC 57.026 50.000 0.00 0.00 0.00 5.19
283 284 2.154567 TACCAACGATCTGTAGCCCT 57.845 50.000 0.00 0.00 0.00 5.19
284 285 0.537188 ACCAACGATCTGTAGCCCTG 59.463 55.000 0.00 0.00 0.00 4.45
285 286 0.824109 CCAACGATCTGTAGCCCTGA 59.176 55.000 0.00 0.00 0.00 3.86
286 287 1.207089 CCAACGATCTGTAGCCCTGAA 59.793 52.381 0.00 0.00 0.00 3.02
287 288 2.354704 CCAACGATCTGTAGCCCTGAAA 60.355 50.000 0.00 0.00 0.00 2.69
288 289 3.334691 CAACGATCTGTAGCCCTGAAAA 58.665 45.455 0.00 0.00 0.00 2.29
289 290 3.914426 ACGATCTGTAGCCCTGAAAAT 57.086 42.857 0.00 0.00 0.00 1.82
290 291 3.798202 ACGATCTGTAGCCCTGAAAATC 58.202 45.455 0.00 0.00 0.00 2.17
291 292 3.197766 ACGATCTGTAGCCCTGAAAATCA 59.802 43.478 0.00 0.00 0.00 2.57
292 293 4.191544 CGATCTGTAGCCCTGAAAATCAA 58.808 43.478 0.00 0.00 0.00 2.57
293 294 4.272018 CGATCTGTAGCCCTGAAAATCAAG 59.728 45.833 0.00 0.00 0.00 3.02
294 295 4.640771 TCTGTAGCCCTGAAAATCAAGT 57.359 40.909 0.00 0.00 0.00 3.16
295 296 4.985538 TCTGTAGCCCTGAAAATCAAGTT 58.014 39.130 0.00 0.00 0.00 2.66
296 297 4.761739 TCTGTAGCCCTGAAAATCAAGTTG 59.238 41.667 0.00 0.00 0.00 3.16
297 298 3.255642 TGTAGCCCTGAAAATCAAGTTGC 59.744 43.478 0.00 0.00 0.00 4.17
298 299 2.601905 AGCCCTGAAAATCAAGTTGCT 58.398 42.857 0.00 0.00 0.00 3.91
299 300 3.766545 AGCCCTGAAAATCAAGTTGCTA 58.233 40.909 0.00 0.00 0.00 3.49
300 301 3.507622 AGCCCTGAAAATCAAGTTGCTAC 59.492 43.478 0.00 0.00 0.00 3.58
301 302 3.255642 GCCCTGAAAATCAAGTTGCTACA 59.744 43.478 0.13 0.00 0.00 2.74
302 303 4.616835 GCCCTGAAAATCAAGTTGCTACAG 60.617 45.833 0.13 3.72 0.00 2.74
303 304 4.761739 CCCTGAAAATCAAGTTGCTACAGA 59.238 41.667 0.13 0.00 0.00 3.41
304 305 5.335191 CCCTGAAAATCAAGTTGCTACAGAC 60.335 44.000 0.13 0.00 0.00 3.51
305 306 5.342806 TGAAAATCAAGTTGCTACAGACG 57.657 39.130 0.13 0.00 0.00 4.18
306 307 4.213270 TGAAAATCAAGTTGCTACAGACGG 59.787 41.667 0.13 0.00 0.00 4.79
307 308 1.726853 ATCAAGTTGCTACAGACGGC 58.273 50.000 0.13 0.00 0.00 5.68
308 309 0.679505 TCAAGTTGCTACAGACGGCT 59.320 50.000 0.13 0.00 0.00 5.52
309 310 1.070134 TCAAGTTGCTACAGACGGCTT 59.930 47.619 0.00 0.00 0.00 4.35
310 311 1.873591 CAAGTTGCTACAGACGGCTTT 59.126 47.619 0.00 0.00 0.00 3.51
311 312 2.256117 AGTTGCTACAGACGGCTTTT 57.744 45.000 0.00 0.00 0.00 2.27
312 313 2.572290 AGTTGCTACAGACGGCTTTTT 58.428 42.857 0.00 0.00 0.00 1.94
313 314 3.735591 AGTTGCTACAGACGGCTTTTTA 58.264 40.909 0.00 0.00 0.00 1.52
314 315 3.497262 AGTTGCTACAGACGGCTTTTTAC 59.503 43.478 0.00 0.00 0.00 2.01
315 316 2.419667 TGCTACAGACGGCTTTTTACC 58.580 47.619 0.00 0.00 0.00 2.85
324 325 3.125698 CGGCTTTTTACCGTTGTATGG 57.874 47.619 0.00 0.00 45.70 2.74
325 326 2.743126 CGGCTTTTTACCGTTGTATGGA 59.257 45.455 0.00 0.00 45.70 3.41
326 327 3.181514 CGGCTTTTTACCGTTGTATGGAG 60.182 47.826 0.00 0.00 45.70 3.86
327 328 3.754850 GGCTTTTTACCGTTGTATGGAGT 59.245 43.478 0.00 0.00 0.00 3.85
328 329 4.379082 GGCTTTTTACCGTTGTATGGAGTG 60.379 45.833 0.00 0.00 0.00 3.51
329 330 4.719040 CTTTTTACCGTTGTATGGAGTGC 58.281 43.478 0.00 0.00 0.00 4.40
330 331 2.389962 TTACCGTTGTATGGAGTGCC 57.610 50.000 0.00 0.00 0.00 5.01
331 332 0.173935 TACCGTTGTATGGAGTGCCG 59.826 55.000 0.00 0.00 36.79 5.69
332 333 1.079405 CCGTTGTATGGAGTGCCGT 60.079 57.895 0.00 0.00 36.79 5.68
333 334 1.082117 CCGTTGTATGGAGTGCCGTC 61.082 60.000 0.00 0.00 36.79 4.79
334 335 0.108804 CGTTGTATGGAGTGCCGTCT 60.109 55.000 0.00 0.00 36.79 4.18
335 336 1.359848 GTTGTATGGAGTGCCGTCTG 58.640 55.000 0.00 0.00 36.79 3.51
336 337 0.391130 TTGTATGGAGTGCCGTCTGC 60.391 55.000 0.00 0.00 41.77 4.26
345 346 2.563427 GCCGTCTGCAAAGCTTCC 59.437 61.111 0.00 0.00 40.77 3.46
346 347 2.863153 CCGTCTGCAAAGCTTCCG 59.137 61.111 0.00 0.00 0.00 4.30
347 348 2.680913 CCGTCTGCAAAGCTTCCGG 61.681 63.158 0.00 0.00 0.00 5.14
348 349 2.680913 CGTCTGCAAAGCTTCCGGG 61.681 63.158 0.00 0.00 0.00 5.73
349 350 1.302511 GTCTGCAAAGCTTCCGGGA 60.303 57.895 0.00 0.00 0.00 5.14
350 351 0.889186 GTCTGCAAAGCTTCCGGGAA 60.889 55.000 9.52 9.52 0.00 3.97
351 352 0.889186 TCTGCAAAGCTTCCGGGAAC 60.889 55.000 5.09 3.43 0.00 3.62
352 353 0.890996 CTGCAAAGCTTCCGGGAACT 60.891 55.000 5.09 5.76 0.00 3.01
353 354 1.172180 TGCAAAGCTTCCGGGAACTG 61.172 55.000 5.09 0.00 0.00 3.16
354 355 1.581447 CAAAGCTTCCGGGAACTGC 59.419 57.895 5.09 9.12 0.00 4.40
355 356 1.603739 AAAGCTTCCGGGAACTGCC 60.604 57.895 15.18 1.72 0.00 4.85
356 357 2.069165 AAAGCTTCCGGGAACTGCCT 62.069 55.000 15.18 2.43 36.66 4.75
357 358 2.034221 GCTTCCGGGAACTGCCTT 59.966 61.111 5.09 0.00 36.66 4.35
358 359 2.041115 GCTTCCGGGAACTGCCTTC 61.041 63.158 5.09 0.00 36.66 3.46
359 360 1.679898 CTTCCGGGAACTGCCTTCT 59.320 57.895 5.09 0.00 36.66 2.85
360 361 0.036875 CTTCCGGGAACTGCCTTCTT 59.963 55.000 5.09 0.00 36.66 2.52
361 362 1.278127 CTTCCGGGAACTGCCTTCTTA 59.722 52.381 5.09 0.00 36.66 2.10
362 363 1.354101 TCCGGGAACTGCCTTCTTAA 58.646 50.000 0.00 0.00 36.66 1.85
363 364 1.278127 TCCGGGAACTGCCTTCTTAAG 59.722 52.381 0.00 0.00 36.66 1.85
364 365 1.087501 CGGGAACTGCCTTCTTAAGC 58.912 55.000 0.00 0.00 36.66 3.09
365 366 1.087501 GGGAACTGCCTTCTTAAGCG 58.912 55.000 0.00 0.00 36.66 4.68
366 367 1.087501 GGAACTGCCTTCTTAAGCGG 58.912 55.000 0.00 1.96 41.32 5.52
368 369 3.233355 ACTGCCTTCTTAAGCGGTG 57.767 52.632 10.95 7.78 46.64 4.94
369 370 0.321653 ACTGCCTTCTTAAGCGGTGG 60.322 55.000 10.95 5.79 46.64 4.61
370 371 0.036388 CTGCCTTCTTAAGCGGTGGA 60.036 55.000 10.95 0.00 0.00 4.02
371 372 0.618458 TGCCTTCTTAAGCGGTGGAT 59.382 50.000 10.95 0.00 0.00 3.41
372 373 1.004277 TGCCTTCTTAAGCGGTGGATT 59.996 47.619 10.95 0.00 0.00 3.01
373 374 2.237643 TGCCTTCTTAAGCGGTGGATTA 59.762 45.455 10.95 0.00 0.00 1.75
374 375 2.872858 GCCTTCTTAAGCGGTGGATTAG 59.127 50.000 10.95 0.00 0.00 1.73
375 376 3.681874 GCCTTCTTAAGCGGTGGATTAGT 60.682 47.826 10.95 0.00 0.00 2.24
376 377 4.120589 CCTTCTTAAGCGGTGGATTAGTC 58.879 47.826 0.00 0.00 0.00 2.59
377 378 4.141914 CCTTCTTAAGCGGTGGATTAGTCT 60.142 45.833 0.00 0.00 0.00 3.24
378 379 5.416271 TTCTTAAGCGGTGGATTAGTCTT 57.584 39.130 0.00 0.00 0.00 3.01
379 380 5.007385 TCTTAAGCGGTGGATTAGTCTTC 57.993 43.478 0.00 0.00 0.00 2.87
380 381 2.693267 AAGCGGTGGATTAGTCTTCC 57.307 50.000 0.00 0.00 0.00 3.46
381 382 1.568504 AGCGGTGGATTAGTCTTCCA 58.431 50.000 0.00 0.00 40.96 3.53
382 383 1.482593 AGCGGTGGATTAGTCTTCCAG 59.517 52.381 0.00 0.00 43.78 3.86
383 384 1.207329 GCGGTGGATTAGTCTTCCAGT 59.793 52.381 0.00 0.00 43.78 4.00
384 385 2.738964 GCGGTGGATTAGTCTTCCAGTC 60.739 54.545 0.00 0.00 43.78 3.51
385 386 2.159085 CGGTGGATTAGTCTTCCAGTCC 60.159 54.545 0.00 0.00 43.78 3.85
386 387 3.108376 GGTGGATTAGTCTTCCAGTCCT 58.892 50.000 0.00 0.00 43.78 3.85
387 388 3.133183 GGTGGATTAGTCTTCCAGTCCTC 59.867 52.174 0.00 0.00 43.78 3.71
388 389 3.133183 GTGGATTAGTCTTCCAGTCCTCC 59.867 52.174 0.00 0.00 43.78 4.30
389 390 3.245984 TGGATTAGTCTTCCAGTCCTCCA 60.246 47.826 0.00 0.00 38.35 3.86
390 391 3.970640 GGATTAGTCTTCCAGTCCTCCAT 59.029 47.826 0.00 0.00 33.21 3.41
391 392 5.148502 GGATTAGTCTTCCAGTCCTCCATA 58.851 45.833 0.00 0.00 33.21 2.74
392 393 5.782845 GGATTAGTCTTCCAGTCCTCCATAT 59.217 44.000 0.00 0.00 33.21 1.78
393 394 6.271159 GGATTAGTCTTCCAGTCCTCCATATT 59.729 42.308 0.00 0.00 33.21 1.28
394 395 7.202139 GGATTAGTCTTCCAGTCCTCCATATTT 60.202 40.741 0.00 0.00 33.21 1.40
395 396 7.510675 TTAGTCTTCCAGTCCTCCATATTTT 57.489 36.000 0.00 0.00 0.00 1.82
396 397 8.618240 TTAGTCTTCCAGTCCTCCATATTTTA 57.382 34.615 0.00 0.00 0.00 1.52
397 398 7.130681 AGTCTTCCAGTCCTCCATATTTTAG 57.869 40.000 0.00 0.00 0.00 1.85
398 399 6.903534 AGTCTTCCAGTCCTCCATATTTTAGA 59.096 38.462 0.00 0.00 0.00 2.10
399 400 7.403231 AGTCTTCCAGTCCTCCATATTTTAGAA 59.597 37.037 0.00 0.00 0.00 2.10
400 401 8.214364 GTCTTCCAGTCCTCCATATTTTAGAAT 58.786 37.037 0.00 0.00 0.00 2.40
401 402 8.213679 TCTTCCAGTCCTCCATATTTTAGAATG 58.786 37.037 0.00 0.00 0.00 2.67
402 403 6.299141 TCCAGTCCTCCATATTTTAGAATGC 58.701 40.000 0.00 0.00 0.00 3.56
403 404 6.101734 TCCAGTCCTCCATATTTTAGAATGCT 59.898 38.462 0.00 0.00 0.00 3.79
404 405 7.292356 TCCAGTCCTCCATATTTTAGAATGCTA 59.708 37.037 0.00 0.00 0.00 3.49
405 406 7.389053 CCAGTCCTCCATATTTTAGAATGCTAC 59.611 40.741 0.00 0.00 0.00 3.58
406 407 7.933577 CAGTCCTCCATATTTTAGAATGCTACA 59.066 37.037 0.00 0.00 0.00 2.74
407 408 8.153550 AGTCCTCCATATTTTAGAATGCTACAG 58.846 37.037 0.00 0.00 0.00 2.74
408 409 8.150945 GTCCTCCATATTTTAGAATGCTACAGA 58.849 37.037 0.00 0.00 0.00 3.41
409 410 8.150945 TCCTCCATATTTTAGAATGCTACAGAC 58.849 37.037 0.00 0.00 0.00 3.51
410 411 7.933577 CCTCCATATTTTAGAATGCTACAGACA 59.066 37.037 0.00 0.00 0.00 3.41
411 412 8.893219 TCCATATTTTAGAATGCTACAGACAG 57.107 34.615 0.00 0.00 0.00 3.51
412 413 8.486210 TCCATATTTTAGAATGCTACAGACAGT 58.514 33.333 0.00 0.00 0.00 3.55
413 414 9.764363 CCATATTTTAGAATGCTACAGACAGTA 57.236 33.333 0.00 0.00 0.00 2.74
424 425 2.584236 ACAGACAGTAGAACGACCAGT 58.416 47.619 0.00 0.00 0.00 4.00
425 426 2.553172 ACAGACAGTAGAACGACCAGTC 59.447 50.000 0.00 0.00 0.00 3.51
426 427 2.814919 CAGACAGTAGAACGACCAGTCT 59.185 50.000 0.00 0.00 36.30 3.24
427 428 4.001652 CAGACAGTAGAACGACCAGTCTA 58.998 47.826 0.00 0.00 34.96 2.59
428 429 4.636648 CAGACAGTAGAACGACCAGTCTAT 59.363 45.833 0.00 0.00 34.96 1.98
429 430 5.124138 CAGACAGTAGAACGACCAGTCTATT 59.876 44.000 0.00 0.00 34.96 1.73
430 431 5.124138 AGACAGTAGAACGACCAGTCTATTG 59.876 44.000 0.00 0.00 34.96 1.90
431 432 4.765856 ACAGTAGAACGACCAGTCTATTGT 59.234 41.667 3.76 3.76 33.36 2.71
432 433 5.942236 ACAGTAGAACGACCAGTCTATTGTA 59.058 40.000 6.96 0.00 34.78 2.41
433 434 6.128063 ACAGTAGAACGACCAGTCTATTGTAC 60.128 42.308 6.96 9.25 34.78 2.90
434 435 4.352600 AGAACGACCAGTCTATTGTACG 57.647 45.455 0.00 0.00 0.00 3.67
435 436 3.755378 AGAACGACCAGTCTATTGTACGT 59.245 43.478 0.00 0.00 32.48 3.57
436 437 3.482722 ACGACCAGTCTATTGTACGTG 57.517 47.619 0.00 0.00 30.95 4.49
437 438 2.163010 ACGACCAGTCTATTGTACGTGG 59.837 50.000 0.00 0.00 30.95 4.94
438 439 2.163010 CGACCAGTCTATTGTACGTGGT 59.837 50.000 0.00 0.00 41.04 4.16
439 440 3.508762 GACCAGTCTATTGTACGTGGTG 58.491 50.000 0.00 0.00 38.42 4.17
440 441 2.895404 ACCAGTCTATTGTACGTGGTGT 59.105 45.455 0.00 0.00 36.92 4.16
441 442 3.322828 ACCAGTCTATTGTACGTGGTGTT 59.677 43.478 0.00 0.00 36.92 3.32
442 443 4.202284 ACCAGTCTATTGTACGTGGTGTTT 60.202 41.667 0.00 0.00 36.92 2.83
443 444 4.753107 CCAGTCTATTGTACGTGGTGTTTT 59.247 41.667 0.00 0.00 0.00 2.43
444 445 5.237779 CCAGTCTATTGTACGTGGTGTTTTT 59.762 40.000 0.00 0.00 0.00 1.94
445 446 6.424509 CCAGTCTATTGTACGTGGTGTTTTTA 59.575 38.462 0.00 0.00 0.00 1.52
446 447 7.285788 CAGTCTATTGTACGTGGTGTTTTTAC 58.714 38.462 0.00 0.00 0.00 2.01
447 448 6.424812 AGTCTATTGTACGTGGTGTTTTTACC 59.575 38.462 0.00 0.00 41.24 2.85
459 460 7.069877 TGGTGTTTTTACCACTGTCTATAGT 57.930 36.000 0.00 0.00 45.46 2.12
460 461 7.511268 TGGTGTTTTTACCACTGTCTATAGTT 58.489 34.615 0.00 0.00 45.46 2.24
461 462 7.442969 TGGTGTTTTTACCACTGTCTATAGTTG 59.557 37.037 0.00 0.00 45.46 3.16
462 463 7.658575 GGTGTTTTTACCACTGTCTATAGTTGA 59.341 37.037 0.00 0.00 40.54 3.18
463 464 8.709646 GTGTTTTTACCACTGTCTATAGTTGAG 58.290 37.037 0.00 0.00 0.00 3.02
464 465 7.876068 TGTTTTTACCACTGTCTATAGTTGAGG 59.124 37.037 0.00 2.69 0.00 3.86
465 466 7.549147 TTTTACCACTGTCTATAGTTGAGGT 57.451 36.000 0.00 7.86 31.67 3.85
466 467 6.525578 TTACCACTGTCTATAGTTGAGGTG 57.474 41.667 15.43 11.29 30.10 4.00
467 468 3.769844 ACCACTGTCTATAGTTGAGGTGG 59.230 47.826 20.18 20.18 40.75 4.61
468 469 4.023980 CCACTGTCTATAGTTGAGGTGGA 58.976 47.826 18.57 0.00 39.06 4.02
469 470 4.098654 CCACTGTCTATAGTTGAGGTGGAG 59.901 50.000 18.57 0.00 39.06 3.86
470 471 4.707448 CACTGTCTATAGTTGAGGTGGAGT 59.293 45.833 0.00 0.00 0.00 3.85
471 472 4.707448 ACTGTCTATAGTTGAGGTGGAGTG 59.293 45.833 0.00 0.00 0.00 3.51
472 473 4.673968 TGTCTATAGTTGAGGTGGAGTGT 58.326 43.478 0.00 0.00 0.00 3.55
473 474 4.705507 TGTCTATAGTTGAGGTGGAGTGTC 59.294 45.833 0.00 0.00 0.00 3.67
474 475 3.945921 TCTATAGTTGAGGTGGAGTGTCG 59.054 47.826 0.00 0.00 0.00 4.35
475 476 1.991121 TAGTTGAGGTGGAGTGTCGT 58.009 50.000 0.00 0.00 0.00 4.34
476 477 1.120530 AGTTGAGGTGGAGTGTCGTT 58.879 50.000 0.00 0.00 0.00 3.85
477 478 2.313317 AGTTGAGGTGGAGTGTCGTTA 58.687 47.619 0.00 0.00 0.00 3.18
478 479 2.296471 AGTTGAGGTGGAGTGTCGTTAG 59.704 50.000 0.00 0.00 0.00 2.34
479 480 2.281539 TGAGGTGGAGTGTCGTTAGA 57.718 50.000 0.00 0.00 0.00 2.10
480 481 2.160205 TGAGGTGGAGTGTCGTTAGAG 58.840 52.381 0.00 0.00 0.00 2.43
481 482 2.224695 TGAGGTGGAGTGTCGTTAGAGA 60.225 50.000 0.00 0.00 0.00 3.10
482 483 2.161030 AGGTGGAGTGTCGTTAGAGAC 58.839 52.381 0.00 0.00 40.58 3.36
490 491 2.734670 TGTCGTTAGAGACAACCGTTG 58.265 47.619 9.80 9.80 46.81 4.10
491 492 2.099592 TGTCGTTAGAGACAACCGTTGT 59.900 45.455 16.83 16.83 46.81 3.32
505 506 7.412137 ACAACCGTTGTCTAAACTAATGTAC 57.588 36.000 11.24 0.00 40.56 2.90
506 507 6.985645 ACAACCGTTGTCTAAACTAATGTACA 59.014 34.615 11.24 0.00 40.56 2.90
507 508 7.658575 ACAACCGTTGTCTAAACTAATGTACAT 59.341 33.333 11.24 1.41 40.56 2.29
508 509 7.591006 ACCGTTGTCTAAACTAATGTACATG 57.409 36.000 9.63 0.00 0.00 3.21
509 510 7.156673 ACCGTTGTCTAAACTAATGTACATGT 58.843 34.615 9.63 2.69 0.00 3.21
510 511 7.330208 ACCGTTGTCTAAACTAATGTACATGTC 59.670 37.037 9.63 0.00 0.00 3.06
654 659 0.389556 GAGACGACCGGGAAAGTTCC 60.390 60.000 6.32 1.10 46.82 3.62
655 660 0.830866 AGACGACCGGGAAAGTTCCT 60.831 55.000 6.32 0.00 46.72 3.36
656 661 0.034476 GACGACCGGGAAAGTTCCTT 59.966 55.000 6.32 0.00 46.72 3.36
657 662 0.034476 ACGACCGGGAAAGTTCCTTC 59.966 55.000 6.32 4.03 46.72 3.46
658 663 0.672711 CGACCGGGAAAGTTCCTTCC 60.673 60.000 6.32 0.00 46.72 3.46
659 664 0.672711 GACCGGGAAAGTTCCTTCCG 60.673 60.000 6.32 5.34 45.13 4.30
660 665 1.373812 CCGGGAAAGTTCCTTCCGT 59.626 57.895 9.88 0.00 45.13 4.69
661 666 0.250597 CCGGGAAAGTTCCTTCCGTT 60.251 55.000 9.88 0.00 45.13 4.44
662 667 1.601166 CGGGAAAGTTCCTTCCGTTT 58.399 50.000 9.88 0.00 45.13 3.60
663 668 1.951602 CGGGAAAGTTCCTTCCGTTTT 59.048 47.619 9.88 0.00 45.13 2.43
664 669 2.359848 CGGGAAAGTTCCTTCCGTTTTT 59.640 45.455 9.88 0.00 45.13 1.94
760 765 0.878961 GGTTCACGGCCGATGGATAC 60.879 60.000 35.90 21.90 0.00 2.24
842 847 3.119101 GCCCAACACGAGAAAGAGAGATA 60.119 47.826 0.00 0.00 0.00 1.98
848 853 4.095185 ACACGAGAAAGAGAGATACCTTCG 59.905 45.833 0.00 0.00 0.00 3.79
860 865 6.465084 AGAGATACCTTCGCTTTGTAGTTTT 58.535 36.000 0.00 0.00 29.03 2.43
863 868 8.252964 AGATACCTTCGCTTTGTAGTTTTTAG 57.747 34.615 0.00 0.00 0.00 1.85
933 938 4.521146 AGTATTTATGTGCAGCTTGCTCT 58.479 39.130 9.12 0.92 45.31 4.09
954 965 1.449246 GGCGCTTGCTCATCAGACT 60.449 57.895 7.64 0.00 39.13 3.24
955 966 1.427592 GGCGCTTGCTCATCAGACTC 61.428 60.000 7.64 0.00 39.13 3.36
956 967 0.738762 GCGCTTGCTCATCAGACTCA 60.739 55.000 0.00 0.00 35.07 3.41
957 968 1.937278 CGCTTGCTCATCAGACTCAT 58.063 50.000 0.00 0.00 0.00 2.90
958 969 1.859703 CGCTTGCTCATCAGACTCATC 59.140 52.381 0.00 0.00 0.00 2.92
959 970 2.737679 CGCTTGCTCATCAGACTCATCA 60.738 50.000 0.00 0.00 0.00 3.07
960 971 2.867368 GCTTGCTCATCAGACTCATCAG 59.133 50.000 0.00 0.00 0.00 2.90
961 972 3.430513 GCTTGCTCATCAGACTCATCAGA 60.431 47.826 0.00 0.00 0.00 3.27
979 990 4.408276 TCAGAGTTGCACTTACTCCTACT 58.592 43.478 12.39 0.00 42.35 2.57
1013 1028 0.465705 CACGAGATGGCCCATGTACT 59.534 55.000 0.00 0.00 0.00 2.73
1065 1080 3.127533 GCGCTGACGGCAAGGAAT 61.128 61.111 7.13 0.00 41.91 3.01
1071 1086 1.353103 GACGGCAAGGAATGATGCG 59.647 57.895 0.00 0.00 0.00 4.73
1188 1204 3.625897 CCCGAGTGGCACCTGTCA 61.626 66.667 15.27 0.00 0.00 3.58
1361 1385 0.958091 CTCCACAAAAACCCGCATGA 59.042 50.000 0.00 0.00 0.00 3.07
1415 1439 4.651008 GGTCGACGTTGTGCGGGA 62.651 66.667 9.92 0.00 46.52 5.14
1529 1553 0.668535 CGGATCGTCTACATCTGCCA 59.331 55.000 0.00 0.00 0.00 4.92
1690 1717 1.910722 GAGCATTGGGAGGAGAGCA 59.089 57.895 0.00 0.00 0.00 4.26
1746 1773 0.259065 AGGAGATGCTACGAGACCCA 59.741 55.000 0.00 0.00 0.00 4.51
1848 1875 0.250467 TCTTGGAGTTGTGCAGCCTC 60.250 55.000 0.00 0.00 0.00 4.70
1878 1905 1.140312 AGAAGCTGGAGGTGAACCAA 58.860 50.000 1.62 0.00 38.89 3.67
2090 2140 1.273606 CACATATCTCCTGGTAGCCCG 59.726 57.143 0.00 0.00 0.00 6.13
2091 2141 1.147191 ACATATCTCCTGGTAGCCCGA 59.853 52.381 0.00 0.00 0.00 5.14
2165 2217 4.039366 TCACCTTGGGGTTTTTATTTTCCG 59.961 41.667 0.00 0.00 44.73 4.30
2167 2219 4.039488 ACCTTGGGGTTTTTATTTTCCGTC 59.961 41.667 0.00 0.00 44.73 4.79
2213 2271 0.247185 GCTTGGCTTGCTTGGCATTA 59.753 50.000 6.60 0.00 42.07 1.90
2258 2316 2.293122 GAGTGTTTGCATGCTGTTGGTA 59.707 45.455 20.33 0.00 0.00 3.25
2335 2394 3.133141 TGCTTTGTGTATGTGTGCCTA 57.867 42.857 0.00 0.00 0.00 3.93
2359 2418 6.012658 TGTTGTTTCATCTCCAGCAAATAC 57.987 37.500 0.00 0.00 0.00 1.89
2363 2422 4.906065 TTCATCTCCAGCAAATACATGC 57.094 40.909 0.00 0.00 46.78 4.06
2523 2586 7.861629 ACTCCAACAGATGATGTAAAATAGGA 58.138 34.615 0.00 0.00 43.00 2.94
2529 2604 5.178252 CAGATGATGTAAAATAGGACAGCCG 59.822 44.000 0.00 0.00 39.96 5.52
2530 2605 3.202906 TGATGTAAAATAGGACAGCCGC 58.797 45.455 0.00 0.00 39.96 6.53
2531 2606 2.772077 TGTAAAATAGGACAGCCGCA 57.228 45.000 0.00 0.00 39.96 5.69
2532 2607 3.275617 TGTAAAATAGGACAGCCGCAT 57.724 42.857 0.00 0.00 39.96 4.73
2533 2608 2.942376 TGTAAAATAGGACAGCCGCATG 59.058 45.455 0.00 0.00 39.96 4.06
2534 2609 1.392589 AAAATAGGACAGCCGCATGG 58.607 50.000 0.00 0.00 39.96 3.66
2570 2645 1.737838 TGATGTAGAAAAGGCCAGCG 58.262 50.000 5.01 0.00 0.00 5.18
2723 2815 3.636300 AGCACAAATACAACAAGGCTCAA 59.364 39.130 0.00 0.00 0.00 3.02
2734 2826 4.223320 ACAAGGCTCAACAAACAATACG 57.777 40.909 0.00 0.00 0.00 3.06
2799 2913 2.636005 AGGCTTGCCCTCCATGATATA 58.364 47.619 8.17 0.00 41.21 0.86
2889 3003 0.040646 TCTTCCCTTCTACTCGGCCA 59.959 55.000 2.24 0.00 0.00 5.36
2892 3006 1.354101 TCCCTTCTACTCGGCCAAAA 58.646 50.000 2.24 0.00 0.00 2.44
2914 3028 5.290493 AGCGTATTTCCATGAGGTCATAA 57.710 39.130 0.00 0.00 34.26 1.90
2972 3089 2.222663 CGATCGTTGTGCTTGATCACAG 60.223 50.000 7.03 0.00 46.28 3.66
2990 3108 3.620374 CACAGAAGCAGTCATGATGTACC 59.380 47.826 0.00 0.00 0.00 3.34
2996 3114 2.098117 GCAGTCATGATGTACCAAAGGC 59.902 50.000 0.00 0.00 0.00 4.35
3019 3137 5.046735 GCTCTTCTGATCCCAATATCTAGCA 60.047 44.000 0.00 0.00 0.00 3.49
3024 3142 6.080682 TCTGATCCCAATATCTAGCAAGTCT 58.919 40.000 0.00 0.00 0.00 3.24
3028 3146 6.560003 TCCCAATATCTAGCAAGTCTTCAA 57.440 37.500 0.00 0.00 0.00 2.69
3051 3169 0.250945 TATGTCCAAGCAAACCGGCA 60.251 50.000 0.00 0.00 35.83 5.69
3052 3170 1.805428 ATGTCCAAGCAAACCGGCAC 61.805 55.000 0.00 0.00 35.83 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.647297 GTTGCTGGCTTCTGGTGC 59.353 61.111 0.00 0.00 0.00 5.01
6 7 2.270986 GGGTTGCTGGCTTCTGGTG 61.271 63.158 0.00 0.00 0.00 4.17
7 8 2.085343 ATGGGTTGCTGGCTTCTGGT 62.085 55.000 0.00 0.00 0.00 4.00
8 9 1.304713 ATGGGTTGCTGGCTTCTGG 60.305 57.895 0.00 0.00 0.00 3.86
9 10 1.601419 CCATGGGTTGCTGGCTTCTG 61.601 60.000 2.85 0.00 0.00 3.02
10 11 1.304713 CCATGGGTTGCTGGCTTCT 60.305 57.895 2.85 0.00 0.00 2.85
11 12 3.291611 CCATGGGTTGCTGGCTTC 58.708 61.111 2.85 0.00 0.00 3.86
15 16 2.364579 ATGGCCATGGGTTGCTGG 60.365 61.111 20.04 0.00 35.53 4.85
16 17 2.897207 CATGGCCATGGGTTGCTG 59.103 61.111 34.31 11.13 35.24 4.41
24 25 0.830444 CAGGAATCCCCATGGCCATG 60.830 60.000 34.82 34.82 37.41 3.66
25 26 1.545211 CAGGAATCCCCATGGCCAT 59.455 57.895 14.09 14.09 37.41 4.40
26 27 3.018019 CAGGAATCCCCATGGCCA 58.982 61.111 8.56 8.56 37.41 5.36
27 28 2.522680 GCAGGAATCCCCATGGCC 60.523 66.667 6.09 1.00 37.41 5.36
28 29 1.152398 ATGCAGGAATCCCCATGGC 60.152 57.895 6.09 0.00 37.41 4.40
29 30 0.541296 GGATGCAGGAATCCCCATGG 60.541 60.000 4.14 4.14 40.36 3.66
30 31 0.892358 CGGATGCAGGAATCCCCATG 60.892 60.000 7.63 0.00 42.86 3.66
31 32 1.457604 CGGATGCAGGAATCCCCAT 59.542 57.895 0.00 0.00 42.86 4.00
32 33 2.918248 CGGATGCAGGAATCCCCA 59.082 61.111 0.00 0.00 42.86 4.96
33 34 2.595754 GCGGATGCAGGAATCCCC 60.596 66.667 0.00 0.00 42.86 4.81
49 50 3.127533 GACACCACCTGCCGATGC 61.128 66.667 0.00 0.00 38.26 3.91
50 51 2.779951 TTCGACACCACCTGCCGATG 62.780 60.000 0.00 0.00 0.00 3.84
51 52 1.899437 ATTCGACACCACCTGCCGAT 61.899 55.000 0.00 0.00 0.00 4.18
52 53 2.501223 GATTCGACACCACCTGCCGA 62.501 60.000 0.00 0.00 0.00 5.54
53 54 2.047274 ATTCGACACCACCTGCCG 60.047 61.111 0.00 0.00 0.00 5.69
54 55 0.321653 AAGATTCGACACCACCTGCC 60.322 55.000 0.00 0.00 0.00 4.85
55 56 1.197721 CAAAGATTCGACACCACCTGC 59.802 52.381 0.00 0.00 0.00 4.85
56 57 1.197721 GCAAAGATTCGACACCACCTG 59.802 52.381 0.00 0.00 0.00 4.00
57 58 1.202758 TGCAAAGATTCGACACCACCT 60.203 47.619 0.00 0.00 0.00 4.00
58 59 1.234821 TGCAAAGATTCGACACCACC 58.765 50.000 0.00 0.00 0.00 4.61
59 60 3.236816 CAATGCAAAGATTCGACACCAC 58.763 45.455 0.00 0.00 0.00 4.16
60 61 2.228582 CCAATGCAAAGATTCGACACCA 59.771 45.455 0.00 0.00 0.00 4.17
61 62 2.228822 ACCAATGCAAAGATTCGACACC 59.771 45.455 0.00 0.00 0.00 4.16
62 63 3.559238 ACCAATGCAAAGATTCGACAC 57.441 42.857 0.00 0.00 0.00 3.67
63 64 8.846943 ATATATACCAATGCAAAGATTCGACA 57.153 30.769 0.00 0.00 0.00 4.35
87 88 9.847706 CAGTATACATGCTCTTCTACGAAATAT 57.152 33.333 5.50 0.00 0.00 1.28
94 95 7.278868 ACTTTTGCAGTATACATGCTCTTCTAC 59.721 37.037 20.56 0.00 44.17 2.59
103 104 8.039603 TGAGGTTTACTTTTGCAGTATACATG 57.960 34.615 5.50 2.10 40.13 3.21
108 109 5.652452 GGGATGAGGTTTACTTTTGCAGTAT 59.348 40.000 0.00 0.00 37.84 2.12
116 117 4.384208 CGGAGATGGGATGAGGTTTACTTT 60.384 45.833 0.00 0.00 0.00 2.66
121 122 0.839946 CCGGAGATGGGATGAGGTTT 59.160 55.000 0.00 0.00 0.00 3.27
124 125 1.356124 AATCCGGAGATGGGATGAGG 58.644 55.000 11.34 0.00 43.43 3.86
157 158 4.893829 TGTACATGCCCTTAGTGTAACA 57.106 40.909 0.00 0.00 41.43 2.41
163 164 4.662278 ACATTGTTGTACATGCCCTTAGT 58.338 39.130 0.00 0.00 33.16 2.24
164 165 4.096382 GGACATTGTTGTACATGCCCTTAG 59.904 45.833 0.00 0.00 36.62 2.18
165 166 4.013728 GGACATTGTTGTACATGCCCTTA 58.986 43.478 0.00 0.00 36.62 2.69
166 167 2.825532 GGACATTGTTGTACATGCCCTT 59.174 45.455 0.00 0.00 36.62 3.95
167 168 2.224992 TGGACATTGTTGTACATGCCCT 60.225 45.455 0.00 0.00 41.92 5.19
168 169 2.164219 CTGGACATTGTTGTACATGCCC 59.836 50.000 0.00 0.00 45.68 5.36
169 170 2.819608 ACTGGACATTGTTGTACATGCC 59.180 45.455 0.00 0.00 45.68 4.40
170 171 3.501828 TGACTGGACATTGTTGTACATGC 59.498 43.478 0.00 0.00 45.68 4.06
171 172 4.378770 GCTGACTGGACATTGTTGTACATG 60.379 45.833 0.00 0.00 45.68 3.21
172 173 3.753272 GCTGACTGGACATTGTTGTACAT 59.247 43.478 0.00 0.00 45.68 2.29
173 174 3.138304 GCTGACTGGACATTGTTGTACA 58.862 45.455 0.00 0.00 44.65 2.90
174 175 3.403038 AGCTGACTGGACATTGTTGTAC 58.597 45.455 0.00 0.00 35.79 2.90
175 176 3.324846 AGAGCTGACTGGACATTGTTGTA 59.675 43.478 0.00 0.00 35.79 2.41
176 177 2.105477 AGAGCTGACTGGACATTGTTGT 59.895 45.455 0.00 0.00 39.32 3.32
177 178 2.740981 GAGAGCTGACTGGACATTGTTG 59.259 50.000 0.00 0.00 0.00 3.33
178 179 2.636893 AGAGAGCTGACTGGACATTGTT 59.363 45.455 0.00 0.00 0.00 2.83
179 180 2.028294 CAGAGAGCTGACTGGACATTGT 60.028 50.000 0.00 0.00 45.17 2.71
180 181 2.619147 CAGAGAGCTGACTGGACATTG 58.381 52.381 0.00 0.00 45.17 2.82
187 188 0.536260 CCCTTCCAGAGAGCTGACTG 59.464 60.000 0.00 0.00 45.17 3.51
188 189 0.411452 TCCCTTCCAGAGAGCTGACT 59.589 55.000 0.00 0.00 45.17 3.41
189 190 0.823460 CTCCCTTCCAGAGAGCTGAC 59.177 60.000 0.00 0.00 45.17 3.51
190 191 0.325110 CCTCCCTTCCAGAGAGCTGA 60.325 60.000 0.00 0.00 45.17 4.26
191 192 0.325110 TCCTCCCTTCCAGAGAGCTG 60.325 60.000 0.00 0.00 41.93 4.24
192 193 0.325203 GTCCTCCCTTCCAGAGAGCT 60.325 60.000 0.00 0.00 32.86 4.09
193 194 0.616111 TGTCCTCCCTTCCAGAGAGC 60.616 60.000 0.00 0.00 32.86 4.09
194 195 1.552792 GTTGTCCTCCCTTCCAGAGAG 59.447 57.143 0.00 0.00 32.86 3.20
195 196 1.150135 AGTTGTCCTCCCTTCCAGAGA 59.850 52.381 0.00 0.00 32.86 3.10
196 197 1.650528 AGTTGTCCTCCCTTCCAGAG 58.349 55.000 0.00 0.00 0.00 3.35
197 198 2.559931 CCTAGTTGTCCTCCCTTCCAGA 60.560 54.545 0.00 0.00 0.00 3.86
198 199 1.834263 CCTAGTTGTCCTCCCTTCCAG 59.166 57.143 0.00 0.00 0.00 3.86
199 200 1.435563 TCCTAGTTGTCCTCCCTTCCA 59.564 52.381 0.00 0.00 0.00 3.53
200 201 2.249309 TCCTAGTTGTCCTCCCTTCC 57.751 55.000 0.00 0.00 0.00 3.46
201 202 4.846168 AAATCCTAGTTGTCCTCCCTTC 57.154 45.455 0.00 0.00 0.00 3.46
202 203 6.030082 TCTAAAATCCTAGTTGTCCTCCCTT 58.970 40.000 0.00 0.00 0.00 3.95
203 204 5.600749 TCTAAAATCCTAGTTGTCCTCCCT 58.399 41.667 0.00 0.00 0.00 4.20
204 205 5.952347 TCTAAAATCCTAGTTGTCCTCCC 57.048 43.478 0.00 0.00 0.00 4.30
205 206 7.184067 TCTTCTAAAATCCTAGTTGTCCTCC 57.816 40.000 0.00 0.00 0.00 4.30
206 207 8.261522 ACATCTTCTAAAATCCTAGTTGTCCTC 58.738 37.037 0.00 0.00 0.00 3.71
207 208 8.043710 CACATCTTCTAAAATCCTAGTTGTCCT 58.956 37.037 0.00 0.00 0.00 3.85
208 209 7.281100 CCACATCTTCTAAAATCCTAGTTGTCC 59.719 40.741 0.00 0.00 0.00 4.02
209 210 8.041323 TCCACATCTTCTAAAATCCTAGTTGTC 58.959 37.037 0.00 0.00 0.00 3.18
210 211 7.918076 TCCACATCTTCTAAAATCCTAGTTGT 58.082 34.615 0.00 0.00 0.00 3.32
211 212 8.792830 TTCCACATCTTCTAAAATCCTAGTTG 57.207 34.615 0.00 0.00 0.00 3.16
212 213 8.826765 TCTTCCACATCTTCTAAAATCCTAGTT 58.173 33.333 0.00 0.00 0.00 2.24
213 214 8.380742 TCTTCCACATCTTCTAAAATCCTAGT 57.619 34.615 0.00 0.00 0.00 2.57
214 215 8.700051 TCTCTTCCACATCTTCTAAAATCCTAG 58.300 37.037 0.00 0.00 0.00 3.02
215 216 8.609617 TCTCTTCCACATCTTCTAAAATCCTA 57.390 34.615 0.00 0.00 0.00 2.94
216 217 7.401493 TCTCTCTTCCACATCTTCTAAAATCCT 59.599 37.037 0.00 0.00 0.00 3.24
217 218 7.560368 TCTCTCTTCCACATCTTCTAAAATCC 58.440 38.462 0.00 0.00 0.00 3.01
218 219 8.474025 TCTCTCTCTTCCACATCTTCTAAAATC 58.526 37.037 0.00 0.00 0.00 2.17
219 220 8.372877 TCTCTCTCTTCCACATCTTCTAAAAT 57.627 34.615 0.00 0.00 0.00 1.82
220 221 7.782897 TCTCTCTCTTCCACATCTTCTAAAA 57.217 36.000 0.00 0.00 0.00 1.52
221 222 7.782897 TTCTCTCTCTTCCACATCTTCTAAA 57.217 36.000 0.00 0.00 0.00 1.85
222 223 7.233553 TGTTTCTCTCTCTTCCACATCTTCTAA 59.766 37.037 0.00 0.00 0.00 2.10
223 224 6.721668 TGTTTCTCTCTCTTCCACATCTTCTA 59.278 38.462 0.00 0.00 0.00 2.10
224 225 5.541868 TGTTTCTCTCTCTTCCACATCTTCT 59.458 40.000 0.00 0.00 0.00 2.85
225 226 5.788450 TGTTTCTCTCTCTTCCACATCTTC 58.212 41.667 0.00 0.00 0.00 2.87
226 227 5.815233 TGTTTCTCTCTCTTCCACATCTT 57.185 39.130 0.00 0.00 0.00 2.40
227 228 5.815233 TTGTTTCTCTCTCTTCCACATCT 57.185 39.130 0.00 0.00 0.00 2.90
228 229 6.313411 CAGATTGTTTCTCTCTCTTCCACATC 59.687 42.308 0.00 0.00 29.93 3.06
229 230 6.171921 CAGATTGTTTCTCTCTCTTCCACAT 58.828 40.000 0.00 0.00 29.93 3.21
230 231 5.070981 ACAGATTGTTTCTCTCTCTTCCACA 59.929 40.000 0.00 0.00 29.93 4.17
231 232 5.546526 ACAGATTGTTTCTCTCTCTTCCAC 58.453 41.667 0.00 0.00 29.93 4.02
232 233 5.565637 CGACAGATTGTTTCTCTCTCTTCCA 60.566 44.000 0.00 0.00 29.93 3.53
233 234 4.862018 CGACAGATTGTTTCTCTCTCTTCC 59.138 45.833 0.00 0.00 29.93 3.46
234 235 4.862018 CCGACAGATTGTTTCTCTCTCTTC 59.138 45.833 0.00 0.00 29.93 2.87
235 236 4.282195 ACCGACAGATTGTTTCTCTCTCTT 59.718 41.667 0.00 0.00 29.93 2.85
236 237 3.829601 ACCGACAGATTGTTTCTCTCTCT 59.170 43.478 0.00 0.00 29.93 3.10
237 238 4.181309 ACCGACAGATTGTTTCTCTCTC 57.819 45.455 0.00 0.00 29.93 3.20
238 239 5.010933 TCTACCGACAGATTGTTTCTCTCT 58.989 41.667 0.00 0.00 29.93 3.10
239 240 5.312120 TCTACCGACAGATTGTTTCTCTC 57.688 43.478 0.00 0.00 29.93 3.20
240 241 5.723672 TTCTACCGACAGATTGTTTCTCT 57.276 39.130 0.00 0.00 29.93 3.10
241 242 6.969828 AATTCTACCGACAGATTGTTTCTC 57.030 37.500 0.00 0.00 29.93 2.87
242 243 6.817140 GGTAATTCTACCGACAGATTGTTTCT 59.183 38.462 0.00 0.00 38.43 2.52
243 244 7.001695 GGTAATTCTACCGACAGATTGTTTC 57.998 40.000 0.00 0.00 38.43 2.78
244 245 6.980051 GGTAATTCTACCGACAGATTGTTT 57.020 37.500 0.00 0.00 38.43 2.83
257 258 5.690857 GGCTACAGATCGTTGGTAATTCTAC 59.309 44.000 0.00 0.00 0.00 2.59
258 259 5.221382 GGGCTACAGATCGTTGGTAATTCTA 60.221 44.000 0.00 0.00 0.00 2.10
259 260 4.443034 GGGCTACAGATCGTTGGTAATTCT 60.443 45.833 0.00 0.00 0.00 2.40
260 261 3.808174 GGGCTACAGATCGTTGGTAATTC 59.192 47.826 0.00 0.00 0.00 2.17
261 262 3.454812 AGGGCTACAGATCGTTGGTAATT 59.545 43.478 0.00 0.00 0.00 1.40
262 263 3.039011 AGGGCTACAGATCGTTGGTAAT 58.961 45.455 0.00 0.00 0.00 1.89
263 264 2.167693 CAGGGCTACAGATCGTTGGTAA 59.832 50.000 0.00 0.00 0.00 2.85
264 265 1.754803 CAGGGCTACAGATCGTTGGTA 59.245 52.381 0.00 0.00 0.00 3.25
265 266 0.537188 CAGGGCTACAGATCGTTGGT 59.463 55.000 0.00 0.00 0.00 3.67
266 267 0.824109 TCAGGGCTACAGATCGTTGG 59.176 55.000 0.00 0.00 0.00 3.77
267 268 2.672961 TTCAGGGCTACAGATCGTTG 57.327 50.000 0.00 0.00 0.00 4.10
268 269 3.695830 TTTTCAGGGCTACAGATCGTT 57.304 42.857 0.00 0.00 0.00 3.85
269 270 3.197766 TGATTTTCAGGGCTACAGATCGT 59.802 43.478 0.00 0.00 0.00 3.73
270 271 3.797039 TGATTTTCAGGGCTACAGATCG 58.203 45.455 0.00 0.00 0.00 3.69
271 272 5.189180 ACTTGATTTTCAGGGCTACAGATC 58.811 41.667 0.00 0.00 0.00 2.75
272 273 5.184892 ACTTGATTTTCAGGGCTACAGAT 57.815 39.130 0.00 0.00 0.00 2.90
273 274 4.640771 ACTTGATTTTCAGGGCTACAGA 57.359 40.909 0.00 0.00 0.00 3.41
274 275 4.616835 GCAACTTGATTTTCAGGGCTACAG 60.617 45.833 0.00 0.00 0.00 2.74
275 276 3.255642 GCAACTTGATTTTCAGGGCTACA 59.744 43.478 0.00 0.00 0.00 2.74
276 277 3.507622 AGCAACTTGATTTTCAGGGCTAC 59.492 43.478 0.00 0.00 0.00 3.58
277 278 3.766545 AGCAACTTGATTTTCAGGGCTA 58.233 40.909 0.00 0.00 0.00 3.93
278 279 2.601905 AGCAACTTGATTTTCAGGGCT 58.398 42.857 0.00 0.00 0.00 5.19
279 280 3.255642 TGTAGCAACTTGATTTTCAGGGC 59.744 43.478 0.00 0.00 0.00 5.19
280 281 4.761739 TCTGTAGCAACTTGATTTTCAGGG 59.238 41.667 0.00 0.00 0.00 4.45
281 282 5.615544 CGTCTGTAGCAACTTGATTTTCAGG 60.616 44.000 0.00 0.00 0.00 3.86
282 283 5.377358 CGTCTGTAGCAACTTGATTTTCAG 58.623 41.667 0.00 0.00 0.00 3.02
283 284 4.213270 CCGTCTGTAGCAACTTGATTTTCA 59.787 41.667 0.00 0.00 0.00 2.69
284 285 4.712763 CCGTCTGTAGCAACTTGATTTTC 58.287 43.478 0.00 0.00 0.00 2.29
285 286 3.058224 GCCGTCTGTAGCAACTTGATTTT 60.058 43.478 0.00 0.00 0.00 1.82
286 287 2.484264 GCCGTCTGTAGCAACTTGATTT 59.516 45.455 0.00 0.00 0.00 2.17
287 288 2.076863 GCCGTCTGTAGCAACTTGATT 58.923 47.619 0.00 0.00 0.00 2.57
288 289 1.276421 AGCCGTCTGTAGCAACTTGAT 59.724 47.619 0.00 0.00 0.00 2.57
289 290 0.679505 AGCCGTCTGTAGCAACTTGA 59.320 50.000 0.00 0.00 0.00 3.02
290 291 1.512926 AAGCCGTCTGTAGCAACTTG 58.487 50.000 0.00 0.00 0.00 3.16
291 292 2.256117 AAAGCCGTCTGTAGCAACTT 57.744 45.000 0.00 0.00 0.00 2.66
292 293 2.256117 AAAAGCCGTCTGTAGCAACT 57.744 45.000 0.00 0.00 0.00 3.16
293 294 3.364664 GGTAAAAAGCCGTCTGTAGCAAC 60.365 47.826 0.00 0.00 0.00 4.17
294 295 2.809696 GGTAAAAAGCCGTCTGTAGCAA 59.190 45.455 0.00 0.00 0.00 3.91
295 296 2.419667 GGTAAAAAGCCGTCTGTAGCA 58.580 47.619 0.00 0.00 0.00 3.49
296 297 1.392510 CGGTAAAAAGCCGTCTGTAGC 59.607 52.381 0.00 0.00 43.84 3.58
305 306 3.754850 ACTCCATACAACGGTAAAAAGCC 59.245 43.478 0.00 0.00 32.19 4.35
306 307 4.719040 CACTCCATACAACGGTAAAAAGC 58.281 43.478 0.00 0.00 32.19 3.51
307 308 4.379082 GGCACTCCATACAACGGTAAAAAG 60.379 45.833 0.00 0.00 32.19 2.27
308 309 3.502979 GGCACTCCATACAACGGTAAAAA 59.497 43.478 0.00 0.00 32.19 1.94
309 310 3.075884 GGCACTCCATACAACGGTAAAA 58.924 45.455 0.00 0.00 32.19 1.52
310 311 2.702261 GGCACTCCATACAACGGTAAA 58.298 47.619 0.00 0.00 32.19 2.01
311 312 1.404449 CGGCACTCCATACAACGGTAA 60.404 52.381 0.00 0.00 32.19 2.85
312 313 0.173935 CGGCACTCCATACAACGGTA 59.826 55.000 0.00 0.00 0.00 4.02
313 314 1.079405 CGGCACTCCATACAACGGT 60.079 57.895 0.00 0.00 0.00 4.83
314 315 1.079405 ACGGCACTCCATACAACGG 60.079 57.895 0.00 0.00 0.00 4.44
315 316 0.108804 AGACGGCACTCCATACAACG 60.109 55.000 0.00 0.00 0.00 4.10
316 317 1.359848 CAGACGGCACTCCATACAAC 58.640 55.000 0.00 0.00 0.00 3.32
317 318 0.391130 GCAGACGGCACTCCATACAA 60.391 55.000 0.00 0.00 43.97 2.41
318 319 1.218047 GCAGACGGCACTCCATACA 59.782 57.895 0.00 0.00 43.97 2.29
319 320 4.110493 GCAGACGGCACTCCATAC 57.890 61.111 0.00 0.00 43.97 2.39
328 329 2.563427 GGAAGCTTTGCAGACGGC 59.437 61.111 0.00 0.00 45.13 5.68
329 330 2.680913 CCGGAAGCTTTGCAGACGG 61.681 63.158 0.00 4.92 34.97 4.79
330 331 2.680913 CCCGGAAGCTTTGCAGACG 61.681 63.158 0.73 0.00 0.00 4.18
331 332 0.889186 TTCCCGGAAGCTTTGCAGAC 60.889 55.000 0.73 0.00 0.00 3.51
332 333 0.889186 GTTCCCGGAAGCTTTGCAGA 60.889 55.000 0.73 0.00 0.00 4.26
333 334 0.890996 AGTTCCCGGAAGCTTTGCAG 60.891 55.000 0.73 0.00 0.00 4.41
334 335 1.150536 AGTTCCCGGAAGCTTTGCA 59.849 52.632 0.73 0.00 0.00 4.08
335 336 1.581447 CAGTTCCCGGAAGCTTTGC 59.419 57.895 0.73 0.00 0.00 3.68
336 337 1.581447 GCAGTTCCCGGAAGCTTTG 59.419 57.895 0.73 0.00 0.00 2.77
337 338 1.603739 GGCAGTTCCCGGAAGCTTT 60.604 57.895 0.73 0.00 0.00 3.51
338 339 2.034221 GGCAGTTCCCGGAAGCTT 59.966 61.111 0.73 0.00 0.00 3.74
339 340 2.470938 GAAGGCAGTTCCCGGAAGCT 62.471 60.000 0.73 0.00 34.51 3.74
340 341 2.034221 AAGGCAGTTCCCGGAAGC 59.966 61.111 0.73 1.20 34.51 3.86
341 342 0.036875 AAGAAGGCAGTTCCCGGAAG 59.963 55.000 0.73 0.00 35.51 3.46
342 343 1.354101 TAAGAAGGCAGTTCCCGGAA 58.646 50.000 0.73 0.00 35.51 4.30
343 344 1.278127 CTTAAGAAGGCAGTTCCCGGA 59.722 52.381 0.73 0.00 35.51 5.14
344 345 1.739067 CTTAAGAAGGCAGTTCCCGG 58.261 55.000 0.00 0.00 35.51 5.73
345 346 1.087501 GCTTAAGAAGGCAGTTCCCG 58.912 55.000 6.67 0.00 35.51 5.14
346 347 1.087501 CGCTTAAGAAGGCAGTTCCC 58.912 55.000 6.67 0.00 35.51 3.97
347 348 1.087501 CCGCTTAAGAAGGCAGTTCC 58.912 55.000 6.67 0.00 35.51 3.62
348 349 1.464997 CACCGCTTAAGAAGGCAGTTC 59.535 52.381 6.67 0.00 35.08 3.01
349 350 1.523758 CACCGCTTAAGAAGGCAGTT 58.476 50.000 6.67 0.00 0.00 3.16
350 351 0.321653 CCACCGCTTAAGAAGGCAGT 60.322 55.000 6.67 0.00 0.00 4.40
351 352 0.036388 TCCACCGCTTAAGAAGGCAG 60.036 55.000 6.67 5.28 0.00 4.85
352 353 0.618458 ATCCACCGCTTAAGAAGGCA 59.382 50.000 6.67 0.00 0.00 4.75
353 354 1.751437 AATCCACCGCTTAAGAAGGC 58.249 50.000 6.67 0.00 0.00 4.35
354 355 4.120589 GACTAATCCACCGCTTAAGAAGG 58.879 47.826 6.67 11.06 0.00 3.46
355 356 5.012328 AGACTAATCCACCGCTTAAGAAG 57.988 43.478 6.67 0.00 0.00 2.85
356 357 5.416271 AAGACTAATCCACCGCTTAAGAA 57.584 39.130 6.67 0.00 0.00 2.52
357 358 4.142004 GGAAGACTAATCCACCGCTTAAGA 60.142 45.833 6.67 0.00 36.92 2.10
358 359 4.120589 GGAAGACTAATCCACCGCTTAAG 58.879 47.826 0.00 0.00 36.92 1.85
359 360 3.516300 TGGAAGACTAATCCACCGCTTAA 59.484 43.478 0.00 0.00 41.98 1.85
360 361 3.101437 TGGAAGACTAATCCACCGCTTA 58.899 45.455 0.00 0.00 41.98 3.09
361 362 1.906574 TGGAAGACTAATCCACCGCTT 59.093 47.619 0.00 0.00 41.98 4.68
362 363 1.482593 CTGGAAGACTAATCCACCGCT 59.517 52.381 0.00 0.00 41.98 5.52
363 364 1.207329 ACTGGAAGACTAATCCACCGC 59.793 52.381 0.00 0.00 41.98 5.68
364 365 2.159085 GGACTGGAAGACTAATCCACCG 60.159 54.545 0.00 0.00 41.98 4.94
365 366 3.108376 AGGACTGGAAGACTAATCCACC 58.892 50.000 0.00 0.00 41.98 4.61
366 367 3.133183 GGAGGACTGGAAGACTAATCCAC 59.867 52.174 0.00 0.00 41.98 4.02
367 368 3.245984 TGGAGGACTGGAAGACTAATCCA 60.246 47.826 0.00 0.00 44.58 3.41
368 369 3.375699 TGGAGGACTGGAAGACTAATCC 58.624 50.000 0.00 0.00 37.43 3.01
369 370 6.926630 ATATGGAGGACTGGAAGACTAATC 57.073 41.667 0.00 0.00 37.43 1.75
370 371 7.698163 AAATATGGAGGACTGGAAGACTAAT 57.302 36.000 0.00 0.00 37.43 1.73
371 372 7.510675 AAAATATGGAGGACTGGAAGACTAA 57.489 36.000 0.00 0.00 37.43 2.24
372 373 8.065627 TCTAAAATATGGAGGACTGGAAGACTA 58.934 37.037 0.00 0.00 37.43 2.59
373 374 6.903534 TCTAAAATATGGAGGACTGGAAGACT 59.096 38.462 0.00 0.00 37.43 3.24
374 375 7.125792 TCTAAAATATGGAGGACTGGAAGAC 57.874 40.000 0.00 0.00 37.43 3.01
375 376 7.749377 TTCTAAAATATGGAGGACTGGAAGA 57.251 36.000 0.00 0.00 37.43 2.87
376 377 7.040823 GCATTCTAAAATATGGAGGACTGGAAG 60.041 40.741 0.00 0.00 42.29 3.46
377 378 6.772716 GCATTCTAAAATATGGAGGACTGGAA 59.227 38.462 0.00 0.00 0.00 3.53
378 379 6.101734 AGCATTCTAAAATATGGAGGACTGGA 59.898 38.462 0.00 0.00 0.00 3.86
379 380 6.302269 AGCATTCTAAAATATGGAGGACTGG 58.698 40.000 0.00 0.00 0.00 4.00
380 381 7.933577 TGTAGCATTCTAAAATATGGAGGACTG 59.066 37.037 0.00 0.00 0.00 3.51
381 382 8.034313 TGTAGCATTCTAAAATATGGAGGACT 57.966 34.615 0.00 0.00 0.00 3.85
382 383 8.150945 TCTGTAGCATTCTAAAATATGGAGGAC 58.849 37.037 0.00 0.00 0.00 3.85
383 384 8.150945 GTCTGTAGCATTCTAAAATATGGAGGA 58.849 37.037 0.00 0.00 0.00 3.71
384 385 7.933577 TGTCTGTAGCATTCTAAAATATGGAGG 59.066 37.037 0.00 0.00 0.00 4.30
385 386 8.893219 TGTCTGTAGCATTCTAAAATATGGAG 57.107 34.615 0.00 0.00 0.00 3.86
386 387 8.486210 ACTGTCTGTAGCATTCTAAAATATGGA 58.514 33.333 0.00 0.00 0.00 3.41
387 388 8.668510 ACTGTCTGTAGCATTCTAAAATATGG 57.331 34.615 0.00 0.00 0.00 2.74
391 392 9.372369 GTTCTACTGTCTGTAGCATTCTAAAAT 57.628 33.333 11.10 0.00 46.15 1.82
392 393 7.541091 CGTTCTACTGTCTGTAGCATTCTAAAA 59.459 37.037 11.10 0.00 46.15 1.52
393 394 7.027760 CGTTCTACTGTCTGTAGCATTCTAAA 58.972 38.462 11.10 0.00 46.15 1.85
394 395 6.373495 TCGTTCTACTGTCTGTAGCATTCTAA 59.627 38.462 11.10 0.00 46.15 2.10
395 396 5.878669 TCGTTCTACTGTCTGTAGCATTCTA 59.121 40.000 11.10 0.00 46.15 2.10
396 397 4.700692 TCGTTCTACTGTCTGTAGCATTCT 59.299 41.667 11.10 0.00 46.15 2.40
397 398 4.794246 GTCGTTCTACTGTCTGTAGCATTC 59.206 45.833 11.10 2.79 46.15 2.67
398 399 4.380655 GGTCGTTCTACTGTCTGTAGCATT 60.381 45.833 11.10 0.00 46.15 3.56
399 400 3.128938 GGTCGTTCTACTGTCTGTAGCAT 59.871 47.826 11.10 0.00 46.15 3.79
400 401 2.486982 GGTCGTTCTACTGTCTGTAGCA 59.513 50.000 11.10 0.00 46.15 3.49
401 402 2.486982 TGGTCGTTCTACTGTCTGTAGC 59.513 50.000 11.10 0.00 46.15 3.58
402 403 6.312983 AGACTGGTCGTTCTACTGTCTGTAG 61.313 48.000 9.95 9.95 41.10 2.74
403 404 3.748083 ACTGGTCGTTCTACTGTCTGTA 58.252 45.455 0.00 0.00 0.00 2.74
404 405 2.553172 GACTGGTCGTTCTACTGTCTGT 59.447 50.000 0.00 0.00 0.00 3.41
405 406 2.814919 AGACTGGTCGTTCTACTGTCTG 59.185 50.000 0.00 0.00 34.45 3.51
406 407 3.143211 AGACTGGTCGTTCTACTGTCT 57.857 47.619 0.00 0.00 32.53 3.41
407 408 5.106237 ACAATAGACTGGTCGTTCTACTGTC 60.106 44.000 0.00 0.00 34.09 3.51
408 409 4.765856 ACAATAGACTGGTCGTTCTACTGT 59.234 41.667 0.00 0.00 34.09 3.55
409 410 5.312120 ACAATAGACTGGTCGTTCTACTG 57.688 43.478 0.00 0.00 34.09 2.74
410 411 5.064452 CGTACAATAGACTGGTCGTTCTACT 59.936 44.000 0.00 0.00 34.09 2.57
411 412 5.163814 ACGTACAATAGACTGGTCGTTCTAC 60.164 44.000 0.00 0.00 34.09 2.59
412 413 4.937620 ACGTACAATAGACTGGTCGTTCTA 59.062 41.667 0.00 0.00 34.09 2.10
413 414 3.755378 ACGTACAATAGACTGGTCGTTCT 59.245 43.478 0.00 0.00 34.09 3.01
414 415 3.850273 CACGTACAATAGACTGGTCGTTC 59.150 47.826 0.00 0.00 31.17 3.95
415 416 3.366679 CCACGTACAATAGACTGGTCGTT 60.367 47.826 0.00 0.00 31.17 3.85
416 417 2.163010 CCACGTACAATAGACTGGTCGT 59.837 50.000 0.00 0.00 32.79 4.34
417 418 2.163010 ACCACGTACAATAGACTGGTCG 59.837 50.000 0.00 0.00 34.09 4.79
418 419 3.057033 ACACCACGTACAATAGACTGGTC 60.057 47.826 0.00 0.00 30.64 4.02
419 420 2.895404 ACACCACGTACAATAGACTGGT 59.105 45.455 0.00 0.00 32.17 4.00
420 421 3.587797 ACACCACGTACAATAGACTGG 57.412 47.619 0.00 0.00 0.00 4.00
421 422 5.917541 AAAACACCACGTACAATAGACTG 57.082 39.130 0.00 0.00 0.00 3.51
422 423 6.424812 GGTAAAAACACCACGTACAATAGACT 59.575 38.462 0.00 0.00 38.55 3.24
423 424 6.202570 TGGTAAAAACACCACGTACAATAGAC 59.797 38.462 0.00 0.00 43.76 2.59
424 425 6.286758 TGGTAAAAACACCACGTACAATAGA 58.713 36.000 0.00 0.00 43.76 1.98
425 426 6.542574 TGGTAAAAACACCACGTACAATAG 57.457 37.500 0.00 0.00 43.76 1.73
435 436 7.069877 ACTATAGACAGTGGTAAAAACACCA 57.930 36.000 6.78 0.00 46.46 4.17
436 437 7.658575 TCAACTATAGACAGTGGTAAAAACACC 59.341 37.037 6.78 0.00 39.63 4.16
437 438 8.597662 TCAACTATAGACAGTGGTAAAAACAC 57.402 34.615 6.78 0.00 39.10 3.32
438 439 7.876068 CCTCAACTATAGACAGTGGTAAAAACA 59.124 37.037 6.78 0.00 0.00 2.83
439 440 7.876582 ACCTCAACTATAGACAGTGGTAAAAAC 59.123 37.037 6.78 0.00 0.00 2.43
440 441 7.876068 CACCTCAACTATAGACAGTGGTAAAAA 59.124 37.037 6.78 0.00 0.00 1.94
441 442 7.383687 CACCTCAACTATAGACAGTGGTAAAA 58.616 38.462 6.78 0.00 0.00 1.52
442 443 6.070995 CCACCTCAACTATAGACAGTGGTAAA 60.071 42.308 6.78 0.00 38.93 2.01
443 444 5.421056 CCACCTCAACTATAGACAGTGGTAA 59.579 44.000 6.78 0.00 38.93 2.85
444 445 4.954202 CCACCTCAACTATAGACAGTGGTA 59.046 45.833 6.78 0.00 38.93 3.25
445 446 3.769844 CCACCTCAACTATAGACAGTGGT 59.230 47.826 6.78 8.84 38.93 4.16
446 447 4.023980 TCCACCTCAACTATAGACAGTGG 58.976 47.826 6.78 14.34 43.89 4.00
447 448 4.707448 ACTCCACCTCAACTATAGACAGTG 59.293 45.833 6.78 6.48 0.00 3.66
448 449 4.707448 CACTCCACCTCAACTATAGACAGT 59.293 45.833 6.78 0.00 0.00 3.55
449 450 4.707448 ACACTCCACCTCAACTATAGACAG 59.293 45.833 6.78 0.00 0.00 3.51
450 451 4.673968 ACACTCCACCTCAACTATAGACA 58.326 43.478 6.78 0.00 0.00 3.41
451 452 4.201930 CGACACTCCACCTCAACTATAGAC 60.202 50.000 6.78 0.00 0.00 2.59
452 453 3.945921 CGACACTCCACCTCAACTATAGA 59.054 47.826 6.78 0.00 0.00 1.98
453 454 3.695060 ACGACACTCCACCTCAACTATAG 59.305 47.826 0.00 0.00 0.00 1.31
454 455 3.693807 ACGACACTCCACCTCAACTATA 58.306 45.455 0.00 0.00 0.00 1.31
455 456 2.526432 ACGACACTCCACCTCAACTAT 58.474 47.619 0.00 0.00 0.00 2.12
456 457 1.991121 ACGACACTCCACCTCAACTA 58.009 50.000 0.00 0.00 0.00 2.24
457 458 1.120530 AACGACACTCCACCTCAACT 58.879 50.000 0.00 0.00 0.00 3.16
458 459 2.295349 TCTAACGACACTCCACCTCAAC 59.705 50.000 0.00 0.00 0.00 3.18
459 460 2.557056 CTCTAACGACACTCCACCTCAA 59.443 50.000 0.00 0.00 0.00 3.02
460 461 2.160205 CTCTAACGACACTCCACCTCA 58.840 52.381 0.00 0.00 0.00 3.86
461 462 2.162008 GTCTCTAACGACACTCCACCTC 59.838 54.545 0.00 0.00 34.11 3.85
462 463 2.161030 GTCTCTAACGACACTCCACCT 58.839 52.381 0.00 0.00 34.11 4.00
463 464 1.884579 TGTCTCTAACGACACTCCACC 59.115 52.381 0.00 0.00 38.89 4.61
464 465 3.306818 GTTGTCTCTAACGACACTCCAC 58.693 50.000 0.00 0.00 43.11 4.02
465 466 2.295349 GGTTGTCTCTAACGACACTCCA 59.705 50.000 0.00 0.00 43.11 3.86
466 467 2.667724 CGGTTGTCTCTAACGACACTCC 60.668 54.545 0.00 0.00 43.11 3.85
467 468 2.031333 ACGGTTGTCTCTAACGACACTC 60.031 50.000 0.00 0.00 43.11 3.51
468 469 1.952296 ACGGTTGTCTCTAACGACACT 59.048 47.619 0.00 0.00 43.11 3.55
469 470 2.412421 ACGGTTGTCTCTAACGACAC 57.588 50.000 0.00 0.00 43.11 3.67
470 471 2.099592 ACAACGGTTGTCTCTAACGACA 59.900 45.455 20.23 0.00 43.20 4.35
471 472 2.735823 ACAACGGTTGTCTCTAACGAC 58.264 47.619 20.23 0.00 40.56 4.34
482 483 7.410800 TGTACATTAGTTTAGACAACGGTTG 57.589 36.000 18.81 18.81 0.00 3.77
483 484 7.658575 ACATGTACATTAGTTTAGACAACGGTT 59.341 33.333 5.37 0.00 0.00 4.44
484 485 7.156673 ACATGTACATTAGTTTAGACAACGGT 58.843 34.615 5.37 0.00 0.00 4.83
485 486 7.201496 GGACATGTACATTAGTTTAGACAACGG 60.201 40.741 5.37 0.00 0.00 4.44
486 487 7.544566 AGGACATGTACATTAGTTTAGACAACG 59.455 37.037 11.55 0.00 0.00 4.10
487 488 8.773404 AGGACATGTACATTAGTTTAGACAAC 57.227 34.615 11.55 0.00 0.00 3.32
490 491 9.530633 CCTTAGGACATGTACATTAGTTTAGAC 57.469 37.037 11.55 0.00 0.00 2.59
491 492 8.202137 GCCTTAGGACATGTACATTAGTTTAGA 58.798 37.037 11.55 0.00 0.00 2.10
492 493 7.169308 CGCCTTAGGACATGTACATTAGTTTAG 59.831 40.741 11.55 0.67 0.00 1.85
493 494 6.982141 CGCCTTAGGACATGTACATTAGTTTA 59.018 38.462 11.55 0.00 0.00 2.01
494 495 5.815740 CGCCTTAGGACATGTACATTAGTTT 59.184 40.000 11.55 0.00 0.00 2.66
495 496 5.357257 CGCCTTAGGACATGTACATTAGTT 58.643 41.667 11.55 0.00 0.00 2.24
496 497 4.202223 CCGCCTTAGGACATGTACATTAGT 60.202 45.833 11.55 1.61 0.00 2.24
497 498 4.038763 TCCGCCTTAGGACATGTACATTAG 59.961 45.833 11.55 4.07 34.92 1.73
498 499 3.962063 TCCGCCTTAGGACATGTACATTA 59.038 43.478 11.55 0.00 34.92 1.90
499 500 2.769663 TCCGCCTTAGGACATGTACATT 59.230 45.455 11.55 0.00 34.92 2.71
500 501 2.394632 TCCGCCTTAGGACATGTACAT 58.605 47.619 11.55 1.41 34.92 2.29
501 502 1.855295 TCCGCCTTAGGACATGTACA 58.145 50.000 11.55 0.00 34.92 2.90
502 503 2.093869 TGTTCCGCCTTAGGACATGTAC 60.094 50.000 0.69 0.00 40.56 2.90
503 504 2.181125 TGTTCCGCCTTAGGACATGTA 58.819 47.619 0.69 0.00 40.56 2.29
504 505 0.981183 TGTTCCGCCTTAGGACATGT 59.019 50.000 0.69 0.00 40.56 3.21
505 506 2.009774 CTTGTTCCGCCTTAGGACATG 58.990 52.381 0.69 0.00 40.56 3.21
506 507 1.679032 GCTTGTTCCGCCTTAGGACAT 60.679 52.381 0.69 0.00 40.56 3.06
507 508 0.321298 GCTTGTTCCGCCTTAGGACA 60.321 55.000 0.69 0.00 40.56 4.02
508 509 0.036294 AGCTTGTTCCGCCTTAGGAC 60.036 55.000 0.69 0.00 40.56 3.85
509 510 1.480954 CTAGCTTGTTCCGCCTTAGGA 59.519 52.381 0.69 0.00 38.79 2.94
510 511 1.941325 CTAGCTTGTTCCGCCTTAGG 58.059 55.000 0.00 0.00 0.00 2.69
744 749 2.725641 CGTATCCATCGGCCGTGA 59.274 61.111 27.15 20.07 0.00 4.35
745 750 2.355837 CCGTATCCATCGGCCGTG 60.356 66.667 27.15 21.41 41.48 4.94
746 751 2.520020 TCCGTATCCATCGGCCGT 60.520 61.111 27.15 10.00 46.49 5.68
747 752 2.049433 GTCCGTATCCATCGGCCG 60.049 66.667 22.12 22.12 46.49 6.13
748 753 2.049433 CGTCCGTATCCATCGGCC 60.049 66.667 0.00 0.00 46.49 6.13
749 754 2.733593 GCGTCCGTATCCATCGGC 60.734 66.667 0.00 0.00 46.49 5.54
751 756 2.428569 CCGCGTCCGTATCCATCG 60.429 66.667 4.92 0.00 0.00 3.84
752 757 1.371389 GTCCGCGTCCGTATCCATC 60.371 63.158 4.92 0.00 0.00 3.51
753 758 2.726274 GTCCGCGTCCGTATCCAT 59.274 61.111 4.92 0.00 0.00 3.41
754 759 3.879682 CGTCCGCGTCCGTATCCA 61.880 66.667 4.92 0.00 0.00 3.41
842 847 7.280652 TGTTACTAAAAACTACAAAGCGAAGGT 59.719 33.333 0.00 0.00 44.60 3.50
860 865 9.944663 GTCACTTTCATTCATGTTTGTTACTAA 57.055 29.630 0.00 0.00 0.00 2.24
863 868 7.591426 GGAGTCACTTTCATTCATGTTTGTTAC 59.409 37.037 0.00 0.00 0.00 2.50
933 938 0.606130 TCTGATGAGCAAGCGCCAAA 60.606 50.000 2.29 0.00 39.83 3.28
956 967 8.553943 CCTAGTAGGAGTAAGTGCAACTCTGAT 61.554 44.444 11.09 6.22 43.03 2.90
957 968 7.303244 CCTAGTAGGAGTAAGTGCAACTCTGA 61.303 46.154 11.09 3.07 43.03 3.27
958 969 5.163602 CCTAGTAGGAGTAAGTGCAACTCTG 60.164 48.000 11.09 0.00 43.03 3.35
959 970 4.951094 CCTAGTAGGAGTAAGTGCAACTCT 59.049 45.833 11.09 5.86 43.03 3.24
960 971 4.705991 ACCTAGTAGGAGTAAGTGCAACTC 59.294 45.833 23.50 8.28 43.03 3.01
961 972 4.675038 ACCTAGTAGGAGTAAGTGCAACT 58.325 43.478 23.50 0.00 45.35 3.16
962 973 5.402997 AACCTAGTAGGAGTAAGTGCAAC 57.597 43.478 23.50 0.00 37.67 4.17
979 990 5.452776 CCATCTCGTGCCTATTACAAACCTA 60.453 44.000 0.00 0.00 0.00 3.08
1013 1028 3.510360 ACTAGGCTCGAGTTTTTGCTCTA 59.490 43.478 15.13 2.86 33.55 2.43
1059 1074 1.004745 AGGTTGTCCGCATCATTCCTT 59.995 47.619 0.00 0.00 39.05 3.36
1071 1086 1.446966 GAGCTCAGCGAGGTTGTCC 60.447 63.158 9.40 0.00 40.67 4.02
1083 1098 2.755876 AGCGACGGGATGAGCTCA 60.756 61.111 20.79 20.79 34.48 4.26
1415 1439 2.768492 GGGTACGCCTCGACGATGT 61.768 63.158 0.00 0.19 36.70 3.06
1529 1553 1.229529 ACCACGTCCTTGGGATCCT 60.230 57.895 12.58 0.00 41.49 3.24
1690 1717 1.128188 ACCTTGTCGGGCCTTCTTCT 61.128 55.000 0.84 0.00 36.97 2.85
1719 1746 3.823873 CTCGTAGCATCTCCTCATACCTT 59.176 47.826 0.00 0.00 0.00 3.50
1746 1773 1.912043 AGCCTCCTAAGATTGCACTGT 59.088 47.619 0.00 0.00 0.00 3.55
1878 1905 3.502211 CGTCCTTAATCTTGTTGCCACTT 59.498 43.478 0.00 0.00 0.00 3.16
1935 1962 1.153823 GATCCAGTCACCGGACACG 60.154 63.158 9.46 0.64 46.80 4.49
2019 2057 4.023291 TGGAGATGCCAAAGTTAAATCCC 58.977 43.478 0.00 0.00 45.87 3.85
2090 2140 2.206576 ATGCCTTCACAGTTCCCTTC 57.793 50.000 0.00 0.00 0.00 3.46
2091 2141 2.108952 AGAATGCCTTCACAGTTCCCTT 59.891 45.455 4.48 0.00 33.56 3.95
2145 2197 4.282449 AGACGGAAAATAAAAACCCCAAGG 59.718 41.667 0.00 0.00 40.04 3.61
2165 2217 3.843426 CGATGAATCGGCTTACAAGAC 57.157 47.619 4.77 0.00 45.93 3.01
2243 2301 2.025981 AGAGGATACCAACAGCATGCAA 60.026 45.455 21.98 0.00 36.86 4.08
2312 2371 3.052036 GGCACACATACACAAAGCAAAG 58.948 45.455 0.00 0.00 0.00 2.77
2319 2378 4.393834 ACAACATAGGCACACATACACAA 58.606 39.130 0.00 0.00 0.00 3.33
2321 2380 5.049060 TGAAACAACATAGGCACACATACAC 60.049 40.000 0.00 0.00 0.00 2.90
2335 2394 5.733620 ATTTGCTGGAGATGAAACAACAT 57.266 34.783 0.00 0.00 0.00 2.71
2382 2441 5.717119 AGATGCTCTTAAAGGCAACATTTG 58.283 37.500 6.18 0.00 41.90 2.32
2478 2541 6.038356 GGAGTTGAACGTTTCCGATAATCTA 58.962 40.000 0.46 0.00 37.88 1.98
2480 2543 4.628333 TGGAGTTGAACGTTTCCGATAATC 59.372 41.667 0.46 0.00 37.88 1.75
2487 2550 2.940410 TCTGTTGGAGTTGAACGTTTCC 59.060 45.455 0.46 5.98 0.00 3.13
2530 2605 2.831742 ATTGGAGCGGCTGCCATG 60.832 61.111 20.29 4.16 44.31 3.66
2531 2606 2.831742 CATTGGAGCGGCTGCCAT 60.832 61.111 20.29 10.71 44.31 4.40
2532 2607 2.842188 ATTCATTGGAGCGGCTGCCA 62.842 55.000 20.29 16.49 44.31 4.92
2533 2608 2.123428 ATTCATTGGAGCGGCTGCC 61.123 57.895 19.11 9.11 44.31 4.85
2534 2609 1.065273 CATTCATTGGAGCGGCTGC 59.935 57.895 15.13 15.13 43.24 5.25
2535 2610 1.001706 CATCATTCATTGGAGCGGCTG 60.002 52.381 7.50 0.00 0.00 4.85
2536 2611 1.315690 CATCATTCATTGGAGCGGCT 58.684 50.000 0.00 0.00 0.00 5.52
2537 2612 1.027357 ACATCATTCATTGGAGCGGC 58.973 50.000 0.00 0.00 0.00 6.53
2538 2613 3.732212 TCTACATCATTCATTGGAGCGG 58.268 45.455 0.00 0.00 0.00 5.52
2539 2614 5.739752 TTTCTACATCATTCATTGGAGCG 57.260 39.130 0.00 0.00 0.00 5.03
2570 2645 0.040425 ATGTTTGAAGTTGTCGCGCC 60.040 50.000 0.00 0.00 0.00 6.53
2702 2794 3.641437 TGAGCCTTGTTGTATTTGTGC 57.359 42.857 0.00 0.00 0.00 4.57
2723 2815 6.542852 GCATGAACTATGACGTATTGTTTGT 58.457 36.000 0.00 0.00 39.21 2.83
2734 2826 4.794248 TGTATTGCGCATGAACTATGAC 57.206 40.909 12.75 1.04 39.21 3.06
2799 2913 4.685169 ACGCACGATGATCTTCAAAAAT 57.315 36.364 9.10 0.00 0.00 1.82
2866 2980 2.035321 GCCGAGTAGAAGGGAAGATCAG 59.965 54.545 0.00 0.00 0.00 2.90
2889 3003 4.331968 TGACCTCATGGAAATACGCTTTT 58.668 39.130 0.00 0.00 37.04 2.27
2892 3006 3.845781 ATGACCTCATGGAAATACGCT 57.154 42.857 0.00 0.00 34.83 5.07
2914 3028 7.145323 CGTGAACAAAATTTGGATTAGACCTT 58.855 34.615 10.71 0.00 34.12 3.50
2972 3089 4.095483 CCTTTGGTACATCATGACTGCTTC 59.905 45.833 0.00 0.00 39.30 3.86
2996 3114 6.602410 TGCTAGATATTGGGATCAGAAGAG 57.398 41.667 0.00 0.00 0.00 2.85
3019 3137 4.397417 GCTTGGACATAGCATTGAAGACTT 59.603 41.667 0.00 0.00 38.51 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.