Multiple sequence alignment - TraesCS1D01G301300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G301300 chr1D 100.000 3984 0 0 1 3984 398983160 398979177 0.000000e+00 7358.0
1 TraesCS1D01G301300 chr1A 91.710 1737 95 20 1 1697 495709800 495708073 0.000000e+00 2364.0
2 TraesCS1D01G301300 chr1A 93.369 1478 48 12 2081 3527 495707659 495706201 0.000000e+00 2141.0
3 TraesCS1D01G301300 chr1A 89.262 149 9 5 3712 3855 495706050 495705904 3.160000e-41 180.0
4 TraesCS1D01G301300 chr1A 87.413 143 12 4 1842 1981 495707914 495707775 4.120000e-35 159.0
5 TraesCS1D01G301300 chr1B 91.916 903 40 10 3 882 534672711 534671819 0.000000e+00 1232.0
6 TraesCS1D01G301300 chr1B 93.095 782 47 6 2790 3568 534669876 534669099 0.000000e+00 1138.0
7 TraesCS1D01G301300 chr1B 93.775 755 32 4 945 1697 534671821 534671080 0.000000e+00 1120.0
8 TraesCS1D01G301300 chr1B 92.077 568 32 7 2093 2650 534670626 534670062 0.000000e+00 787.0
9 TraesCS1D01G301300 chr1B 91.968 249 12 4 1791 2033 534671077 534670831 3.810000e-90 342.0
10 TraesCS1D01G301300 chr1B 95.122 41 2 0 2721 2761 534669919 534669879 9.240000e-07 65.8
11 TraesCS1D01G301300 chr4B 87.762 286 27 5 2169 2453 140959988 140959710 1.070000e-85 327.0
12 TraesCS1D01G301300 chr4B 91.667 180 12 2 2490 2668 140959712 140959535 3.070000e-61 246.0
13 TraesCS1D01G301300 chr3D 87.755 147 18 0 2838 2984 448266254 448266400 5.290000e-39 172.0
14 TraesCS1D01G301300 chr3B 87.755 147 18 0 2838 2984 587966480 587966626 5.290000e-39 172.0
15 TraesCS1D01G301300 chr3B 90.909 44 4 0 3519 3562 709454132 709454175 4.300000e-05 60.2
16 TraesCS1D01G301300 chr3A 86.395 147 20 0 2838 2984 589537571 589537717 1.150000e-35 161.0
17 TraesCS1D01G301300 chr3A 90.385 52 1 3 3512 3563 599997105 599997152 9.240000e-07 65.8
18 TraesCS1D01G301300 chr3A 92.308 39 3 0 3512 3550 672215106 672215144 5.560000e-04 56.5
19 TraesCS1D01G301300 chr5D 96.970 33 1 0 3518 3550 464579747 464579715 5.560000e-04 56.5
20 TraesCS1D01G301300 chr2B 94.286 35 2 0 3511 3545 724872895 724872861 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G301300 chr1D 398979177 398983160 3983 True 7358.0 7358 100.000000 1 3984 1 chr1D.!!$R1 3983
1 TraesCS1D01G301300 chr1A 495705904 495709800 3896 True 1211.0 2364 90.438500 1 3855 4 chr1A.!!$R1 3854
2 TraesCS1D01G301300 chr1B 534669099 534672711 3612 True 780.8 1232 92.992167 3 3568 6 chr1B.!!$R1 3565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 125 0.250338 GTGTGGAAACCTTCGCCTCT 60.250 55.0 0.0 0.0 0.00 3.69 F
411 429 0.530744 TTGTGTTCGATCTCTCGGGG 59.469 55.0 0.0 0.0 45.10 5.73 F
1701 1753 0.970937 CGACTCTTCTGGGCCACCTA 60.971 60.0 0.0 0.0 37.76 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 1831 1.514983 TGGGCATGATGAGTGGATCT 58.485 50.000 0.00 0.0 0.0 2.75 R
2280 2631 2.502538 CAAATGATGCATCCAAACCCCT 59.497 45.455 23.67 0.0 0.0 4.79 R
3622 4076 0.109132 GCAATGCAGAAAAGGACGGG 60.109 55.000 0.00 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 104 0.667993 CCAACCTCTCGCTGCAAAAA 59.332 50.000 0.00 0.00 0.00 1.94
123 125 0.250338 GTGTGGAAACCTTCGCCTCT 60.250 55.000 0.00 0.00 0.00 3.69
230 243 4.179579 GCCGCCGCCATGTTTCTC 62.180 66.667 0.00 0.00 0.00 2.87
253 270 1.332686 GAGTTTTTCGTTCCGGTGCTT 59.667 47.619 0.00 0.00 0.00 3.91
350 368 2.989253 GGGTTTTGTCAGCCGGGG 60.989 66.667 2.18 0.00 0.00 5.73
411 429 0.530744 TTGTGTTCGATCTCTCGGGG 59.469 55.000 0.00 0.00 45.10 5.73
478 503 2.486636 TTCACGTTCTCGGCGATGCT 62.487 55.000 11.27 0.00 41.85 3.79
502 527 8.970293 GCTTACGTAAAATTATTTGGTGTTGTT 58.030 29.630 9.68 0.00 0.00 2.83
536 571 4.335082 TGTTTGTCGCATGCTTACATAC 57.665 40.909 23.92 23.92 33.67 2.39
608 643 5.160607 TCATGTGAGGTTCGAGGTTTATT 57.839 39.130 0.00 0.00 0.00 1.40
611 646 4.069304 TGTGAGGTTCGAGGTTTATTTGG 58.931 43.478 0.00 0.00 0.00 3.28
616 651 4.286291 AGGTTCGAGGTTTATTTGGTCTCT 59.714 41.667 0.00 0.00 0.00 3.10
635 671 1.000171 CTGAGATCCCGAATCGATGCA 60.000 52.381 3.36 0.00 39.55 3.96
639 675 1.410850 ATCCCGAATCGATGCAGGGT 61.411 55.000 24.14 9.12 42.57 4.34
773 809 3.116900 TGAGTACATAGGCCATGGGAGTA 60.117 47.826 15.13 0.00 39.13 2.59
831 875 5.458595 TGCTGATTCCTACTTCTGATAGGA 58.541 41.667 3.43 3.43 45.33 2.94
841 885 5.220710 ACTTCTGATAGGATTTCGATGGG 57.779 43.478 0.00 0.00 0.00 4.00
875 919 7.148557 GCTTCCTGAGTAGAATGTTTGAGTTAC 60.149 40.741 0.00 0.00 0.00 2.50
915 959 4.445453 GCTGTGTCATCATCATGGAGTAA 58.555 43.478 0.00 0.00 0.00 2.24
916 960 4.877823 GCTGTGTCATCATCATGGAGTAAA 59.122 41.667 0.00 0.00 0.00 2.01
921 965 7.148035 TGTGTCATCATCATGGAGTAAATTTGG 60.148 37.037 0.00 0.00 0.00 3.28
932 981 4.532834 GAGTAAATTTGGGGTCATGGCTA 58.467 43.478 0.00 0.00 0.00 3.93
942 991 2.497273 GGGTCATGGCTACAGCAATTTT 59.503 45.455 3.24 0.00 44.36 1.82
943 992 3.514645 GGTCATGGCTACAGCAATTTTG 58.485 45.455 3.24 0.00 44.36 2.44
952 1001 5.098211 GCTACAGCAATTTTGTTCCTCATC 58.902 41.667 0.00 0.00 41.59 2.92
1161 1211 1.410648 CCCTGCTTTATCCTGGCATGT 60.411 52.381 0.00 0.00 35.37 3.21
1170 1220 6.438186 TTTATCCTGGCATGTCATCTCATA 57.562 37.500 0.00 0.00 0.00 2.15
1171 1221 3.758755 TCCTGGCATGTCATCTCATAC 57.241 47.619 0.00 0.00 0.00 2.39
1271 1321 1.305802 TGACAGTCCCTATGCCGGT 60.306 57.895 1.90 0.00 0.00 5.28
1338 1388 2.557869 AGCCACCAAAGGTATAGGACA 58.442 47.619 0.00 0.00 32.11 4.02
1373 1423 8.711170 TCCTCTTATTCGTAAACCCTCATTATT 58.289 33.333 0.00 0.00 0.00 1.40
1388 1438 1.176527 TTATTTGTGCTCTGCCTGCC 58.823 50.000 0.00 0.00 0.00 4.85
1419 1469 8.970859 AGTCCTTGATATTGTAATCTGGAAAG 57.029 34.615 0.00 0.00 33.94 2.62
1462 1512 2.099921 CTCATCCAGGGAGTTACACTCG 59.900 54.545 0.00 0.00 45.96 4.18
1614 1666 9.797556 GATATCAATCTCAATCTCTGATCTCTG 57.202 37.037 0.00 0.00 32.14 3.35
1690 1742 1.512926 TGCCTTCTTTGCGACTCTTC 58.487 50.000 0.00 0.00 0.00 2.87
1697 1749 2.050836 TTTGCGACTCTTCTGGGCCA 62.051 55.000 5.85 5.85 0.00 5.36
1698 1750 2.435059 GCGACTCTTCTGGGCCAC 60.435 66.667 0.00 0.00 0.00 5.01
1699 1751 2.266055 CGACTCTTCTGGGCCACC 59.734 66.667 0.00 0.00 37.24 4.61
1700 1752 2.286523 CGACTCTTCTGGGCCACCT 61.287 63.158 0.00 0.00 37.76 4.00
1701 1753 0.970937 CGACTCTTCTGGGCCACCTA 60.971 60.000 0.00 0.00 37.76 3.08
1702 1754 1.276622 GACTCTTCTGGGCCACCTAA 58.723 55.000 0.00 0.00 37.76 2.69
1703 1755 1.628846 GACTCTTCTGGGCCACCTAAA 59.371 52.381 0.00 0.00 37.76 1.85
1704 1756 2.039879 GACTCTTCTGGGCCACCTAAAA 59.960 50.000 0.00 0.00 37.76 1.52
1705 1757 2.040412 ACTCTTCTGGGCCACCTAAAAG 59.960 50.000 0.00 1.84 37.76 2.27
1706 1758 2.305927 CTCTTCTGGGCCACCTAAAAGA 59.694 50.000 0.00 6.28 37.76 2.52
1707 1759 2.305927 TCTTCTGGGCCACCTAAAAGAG 59.694 50.000 0.00 0.00 37.76 2.85
1708 1760 2.038863 TCTGGGCCACCTAAAAGAGA 57.961 50.000 0.00 0.00 37.76 3.10
1709 1761 2.562296 TCTGGGCCACCTAAAAGAGAT 58.438 47.619 0.00 0.00 37.76 2.75
1710 1762 2.505819 TCTGGGCCACCTAAAAGAGATC 59.494 50.000 0.00 0.00 37.76 2.75
1711 1763 1.564348 TGGGCCACCTAAAAGAGATCC 59.436 52.381 0.00 0.00 37.76 3.36
1712 1764 1.564348 GGGCCACCTAAAAGAGATCCA 59.436 52.381 4.39 0.00 0.00 3.41
1713 1765 2.175715 GGGCCACCTAAAAGAGATCCAT 59.824 50.000 4.39 0.00 0.00 3.41
1714 1766 3.373110 GGGCCACCTAAAAGAGATCCATT 60.373 47.826 4.39 0.00 0.00 3.16
1715 1767 4.281657 GGCCACCTAAAAGAGATCCATTT 58.718 43.478 0.00 0.00 0.00 2.32
1716 1768 4.711846 GGCCACCTAAAAGAGATCCATTTT 59.288 41.667 0.00 9.64 33.42 1.82
1717 1769 5.187772 GGCCACCTAAAAGAGATCCATTTTT 59.812 40.000 0.00 7.45 31.41 1.94
1737 1789 5.845391 TTTTCTAGTTTGAGTGGTTTGGG 57.155 39.130 0.00 0.00 0.00 4.12
1738 1790 4.513406 TTCTAGTTTGAGTGGTTTGGGT 57.487 40.909 0.00 0.00 0.00 4.51
1739 1791 4.513406 TCTAGTTTGAGTGGTTTGGGTT 57.487 40.909 0.00 0.00 0.00 4.11
1740 1792 5.633655 TCTAGTTTGAGTGGTTTGGGTTA 57.366 39.130 0.00 0.00 0.00 2.85
1741 1793 6.195600 TCTAGTTTGAGTGGTTTGGGTTAT 57.804 37.500 0.00 0.00 0.00 1.89
1742 1794 6.235664 TCTAGTTTGAGTGGTTTGGGTTATC 58.764 40.000 0.00 0.00 0.00 1.75
1743 1795 4.149598 AGTTTGAGTGGTTTGGGTTATCC 58.850 43.478 0.00 0.00 0.00 2.59
1744 1796 4.141018 AGTTTGAGTGGTTTGGGTTATCCT 60.141 41.667 0.00 0.00 36.20 3.24
1745 1797 5.073965 AGTTTGAGTGGTTTGGGTTATCCTA 59.926 40.000 0.00 0.00 36.20 2.94
1746 1798 5.789574 TTGAGTGGTTTGGGTTATCCTAT 57.210 39.130 0.00 0.00 36.20 2.57
1747 1799 6.894735 TTGAGTGGTTTGGGTTATCCTATA 57.105 37.500 0.00 0.00 36.20 1.31
1748 1800 6.243216 TGAGTGGTTTGGGTTATCCTATAC 57.757 41.667 0.00 0.00 36.20 1.47
1749 1801 5.968167 TGAGTGGTTTGGGTTATCCTATACT 59.032 40.000 0.00 0.00 36.20 2.12
1750 1802 6.445786 TGAGTGGTTTGGGTTATCCTATACTT 59.554 38.462 0.00 0.00 36.20 2.24
1751 1803 7.037153 TGAGTGGTTTGGGTTATCCTATACTTT 60.037 37.037 0.00 0.00 36.20 2.66
1752 1804 8.396619 AGTGGTTTGGGTTATCCTATACTTTA 57.603 34.615 0.00 0.00 36.20 1.85
1753 1805 9.010767 AGTGGTTTGGGTTATCCTATACTTTAT 57.989 33.333 0.00 0.00 36.20 1.40
1754 1806 9.281371 GTGGTTTGGGTTATCCTATACTTTATC 57.719 37.037 0.00 0.00 36.20 1.75
1755 1807 8.442374 TGGTTTGGGTTATCCTATACTTTATCC 58.558 37.037 0.00 0.00 36.20 2.59
1756 1808 8.666821 GGTTTGGGTTATCCTATACTTTATCCT 58.333 37.037 0.00 0.00 36.20 3.24
1757 1809 9.722184 GTTTGGGTTATCCTATACTTTATCCTC 57.278 37.037 0.00 0.00 36.20 3.71
1758 1810 9.684702 TTTGGGTTATCCTATACTTTATCCTCT 57.315 33.333 0.00 0.00 36.20 3.69
1759 1811 8.896722 TGGGTTATCCTATACTTTATCCTCTC 57.103 38.462 0.00 0.00 36.20 3.20
1760 1812 8.689054 TGGGTTATCCTATACTTTATCCTCTCT 58.311 37.037 0.00 0.00 36.20 3.10
1761 1813 9.549984 GGGTTATCCTATACTTTATCCTCTCTT 57.450 37.037 0.00 0.00 0.00 2.85
1787 1839 8.491045 TTTTGGGAAAAGAATTTAGATCCACT 57.509 30.769 0.00 0.00 37.28 4.00
1788 1840 7.703058 TTGGGAAAAGAATTTAGATCCACTC 57.297 36.000 0.00 0.00 37.28 3.51
1789 1841 6.789268 TGGGAAAAGAATTTAGATCCACTCA 58.211 36.000 0.00 0.00 37.28 3.41
1828 1880 4.130857 TGTGATCACCTTTTTGCGTAGAA 58.869 39.130 22.85 0.00 0.00 2.10
1855 2012 3.380637 CGTAACATGTACTCCTGCTAGGT 59.619 47.826 0.00 0.00 36.53 3.08
1857 2014 2.821437 ACATGTACTCCTGCTAGGTGT 58.179 47.619 0.00 12.43 43.74 4.16
1859 2016 4.350245 ACATGTACTCCTGCTAGGTGTTA 58.650 43.478 12.86 6.11 38.85 2.41
1871 2028 4.003648 GCTAGGTGTTATGTGCACTTTCT 58.996 43.478 19.41 8.24 37.07 2.52
1924 2081 9.645059 CATGGTATTATAACTATCTCTGTGTGG 57.355 37.037 0.00 0.00 0.00 4.17
1927 2084 5.546621 TTATAACTATCTCTGTGTGGCCC 57.453 43.478 0.00 0.00 0.00 5.80
2006 2168 7.102346 CAGTGTGTTCTGAAATATCCTTCTCT 58.898 38.462 0.00 0.00 37.61 3.10
2030 2192 4.277476 TGGATGTGGTCTTTCAAAGTTGT 58.723 39.130 0.00 0.00 0.00 3.32
2031 2193 5.441500 TGGATGTGGTCTTTCAAAGTTGTA 58.558 37.500 0.00 0.00 0.00 2.41
2032 2194 5.888724 TGGATGTGGTCTTTCAAAGTTGTAA 59.111 36.000 0.00 0.00 0.00 2.41
2033 2195 6.039270 TGGATGTGGTCTTTCAAAGTTGTAAG 59.961 38.462 0.00 4.53 37.05 2.34
2034 2196 6.039382 GGATGTGGTCTTTCAAAGTTGTAAGT 59.961 38.462 9.39 0.00 37.03 2.24
2035 2197 6.827586 TGTGGTCTTTCAAAGTTGTAAGTT 57.172 33.333 9.39 0.00 37.03 2.66
2036 2198 6.616947 TGTGGTCTTTCAAAGTTGTAAGTTG 58.383 36.000 9.39 0.00 37.03 3.16
2124 2467 4.760530 TTTCATGAGGTGGGATAGACAG 57.239 45.455 0.00 0.00 0.00 3.51
2182 2532 3.058983 TGATCTTGTTGCTGTTGCTAACG 60.059 43.478 0.00 0.00 40.48 3.18
2186 2536 3.804518 TGTTGCTGTTGCTAACGTATG 57.195 42.857 0.00 0.00 40.48 2.39
2196 2546 6.508777 TGTTGCTAACGTATGTAGCATATGA 58.491 36.000 18.42 4.03 44.95 2.15
2212 2562 6.228995 AGCATATGATAGACAACACCTGATG 58.771 40.000 6.97 0.00 0.00 3.07
2263 2614 7.452880 TCTTGACTAAAATCCACATTGAAGG 57.547 36.000 0.00 0.00 0.00 3.46
2280 2631 4.942944 TGAAGGACTTAGTAGGACCATGA 58.057 43.478 0.00 0.00 0.00 3.07
2283 2634 2.966516 GGACTTAGTAGGACCATGAGGG 59.033 54.545 0.00 0.00 44.81 4.30
2336 2687 7.946655 TGTACATTGCTATAAGTGCAGTATC 57.053 36.000 0.00 0.00 41.71 2.24
2385 2736 5.723887 TCCCTACAATGCATTTTAACCCATT 59.276 36.000 9.83 0.00 0.00 3.16
2386 2737 6.214412 TCCCTACAATGCATTTTAACCCATTT 59.786 34.615 9.83 0.00 0.00 2.32
2389 2740 8.450180 CCTACAATGCATTTTAACCCATTTTTC 58.550 33.333 9.83 0.00 0.00 2.29
2414 2765 6.872920 TGCCATTTTAATTGGTATGTTCTCC 58.127 36.000 7.57 0.00 0.00 3.71
2522 2873 0.107945 GCCCTGCTTTGACGATCTCT 60.108 55.000 0.00 0.00 0.00 3.10
2694 3125 8.469200 CCTTGTGAAAATCTGCAATATTTAGGA 58.531 33.333 11.27 0.00 0.00 2.94
2757 3206 5.724769 GCATGTTTGTTCAGTTTTGCACTTC 60.725 40.000 0.00 0.00 30.92 3.01
2771 3220 0.889186 CACTTCCCCAGAAACCACCG 60.889 60.000 0.00 0.00 0.00 4.94
2772 3221 1.350310 ACTTCCCCAGAAACCACCGT 61.350 55.000 0.00 0.00 0.00 4.83
2773 3222 0.605589 CTTCCCCAGAAACCACCGTC 60.606 60.000 0.00 0.00 0.00 4.79
2774 3223 1.346479 TTCCCCAGAAACCACCGTCA 61.346 55.000 0.00 0.00 0.00 4.35
2775 3224 1.131303 TCCCCAGAAACCACCGTCAT 61.131 55.000 0.00 0.00 0.00 3.06
2776 3225 0.616371 CCCCAGAAACCACCGTCATA 59.384 55.000 0.00 0.00 0.00 2.15
2777 3226 1.211949 CCCCAGAAACCACCGTCATAT 59.788 52.381 0.00 0.00 0.00 1.78
2778 3227 2.436542 CCCCAGAAACCACCGTCATATA 59.563 50.000 0.00 0.00 0.00 0.86
2779 3228 3.494398 CCCCAGAAACCACCGTCATATAG 60.494 52.174 0.00 0.00 0.00 1.31
2780 3229 3.131396 CCAGAAACCACCGTCATATAGC 58.869 50.000 0.00 0.00 0.00 2.97
2781 3230 3.131396 CAGAAACCACCGTCATATAGCC 58.869 50.000 0.00 0.00 0.00 3.93
2782 3231 2.769663 AGAAACCACCGTCATATAGCCA 59.230 45.455 0.00 0.00 0.00 4.75
2783 3232 3.391296 AGAAACCACCGTCATATAGCCAT 59.609 43.478 0.00 0.00 0.00 4.40
2793 3242 7.981789 CACCGTCATATAGCCATATCATAAACT 59.018 37.037 0.00 0.00 0.00 2.66
2801 3250 5.624159 AGCCATATCATAAACTGCTTGCTA 58.376 37.500 0.00 0.00 0.00 3.49
2821 3270 6.301486 TGCTATCCATTATTGATCTGTTGCT 58.699 36.000 0.00 0.00 0.00 3.91
2899 3348 0.179018 CGGATGATCCCCTTGTTCCC 60.179 60.000 5.78 0.00 31.13 3.97
3075 3527 2.621055 GTTGCTGGTTGTGTGTAATCCA 59.379 45.455 0.00 0.00 0.00 3.41
3295 3747 7.780008 TTAGGTCATGTTTTCGTATGTATGG 57.220 36.000 0.00 0.00 0.00 2.74
3379 3831 2.050985 AAGCTCGCTGCAAAACGC 60.051 55.556 0.00 0.00 45.94 4.84
3408 3860 4.645535 TCTGCATATTAGCTTTGCCCTAG 58.354 43.478 0.00 0.00 35.51 3.02
3429 3882 7.200455 CCTAGGTCAAACTTTGTAAACTTTGG 58.800 38.462 0.00 0.00 0.00 3.28
3575 4029 4.522722 ACGGAGTATAATCTTAGCTGCC 57.477 45.455 0.00 0.00 41.94 4.85
3576 4030 3.057456 ACGGAGTATAATCTTAGCTGCCG 60.057 47.826 0.00 0.00 41.94 5.69
3577 4031 3.057456 CGGAGTATAATCTTAGCTGCCGT 60.057 47.826 0.00 0.00 0.00 5.68
3578 4032 4.487019 GGAGTATAATCTTAGCTGCCGTC 58.513 47.826 0.00 0.00 0.00 4.79
3579 4033 4.487019 GAGTATAATCTTAGCTGCCGTCC 58.513 47.826 0.00 0.00 0.00 4.79
3580 4034 3.895656 AGTATAATCTTAGCTGCCGTCCA 59.104 43.478 0.00 0.00 0.00 4.02
3581 4035 4.528596 AGTATAATCTTAGCTGCCGTCCAT 59.471 41.667 0.00 0.00 0.00 3.41
3582 4036 2.246719 AATCTTAGCTGCCGTCCATC 57.753 50.000 0.00 0.00 0.00 3.51
3584 4038 0.461548 TCTTAGCTGCCGTCCATCAG 59.538 55.000 0.00 0.00 0.00 2.90
3585 4039 0.176680 CTTAGCTGCCGTCCATCAGT 59.823 55.000 0.00 0.00 33.09 3.41
3586 4040 0.175760 TTAGCTGCCGTCCATCAGTC 59.824 55.000 0.00 0.00 33.09 3.51
3587 4041 0.970427 TAGCTGCCGTCCATCAGTCA 60.970 55.000 0.00 0.00 33.09 3.41
3588 4042 1.812922 GCTGCCGTCCATCAGTCAG 60.813 63.158 0.00 0.00 33.09 3.51
3589 4043 1.893062 CTGCCGTCCATCAGTCAGA 59.107 57.895 0.00 0.00 0.00 3.27
3590 4044 0.463204 CTGCCGTCCATCAGTCAGAT 59.537 55.000 0.00 0.00 37.48 2.90
3591 4045 1.683385 CTGCCGTCCATCAGTCAGATA 59.317 52.381 0.00 0.00 34.43 1.98
3592 4046 2.101415 CTGCCGTCCATCAGTCAGATAA 59.899 50.000 0.00 0.00 34.43 1.75
3593 4047 2.499693 TGCCGTCCATCAGTCAGATAAA 59.500 45.455 0.00 0.00 34.43 1.40
3594 4048 3.126831 GCCGTCCATCAGTCAGATAAAG 58.873 50.000 0.00 0.00 34.43 1.85
3595 4049 3.430929 GCCGTCCATCAGTCAGATAAAGT 60.431 47.826 0.00 0.00 34.43 2.66
3596 4050 4.202121 GCCGTCCATCAGTCAGATAAAGTA 60.202 45.833 0.00 0.00 34.43 2.24
3597 4051 5.681437 GCCGTCCATCAGTCAGATAAAGTAA 60.681 44.000 0.00 0.00 34.43 2.24
3598 4052 6.338146 CCGTCCATCAGTCAGATAAAGTAAA 58.662 40.000 0.00 0.00 34.43 2.01
3599 4053 6.816640 CCGTCCATCAGTCAGATAAAGTAAAA 59.183 38.462 0.00 0.00 34.43 1.52
3600 4054 7.010552 CCGTCCATCAGTCAGATAAAGTAAAAG 59.989 40.741 0.00 0.00 34.43 2.27
3601 4055 7.464710 CGTCCATCAGTCAGATAAAGTAAAAGC 60.465 40.741 0.00 0.00 34.43 3.51
3602 4056 6.535150 TCCATCAGTCAGATAAAGTAAAAGCG 59.465 38.462 0.00 0.00 34.43 4.68
3603 4057 6.238211 CCATCAGTCAGATAAAGTAAAAGCGG 60.238 42.308 0.00 0.00 34.43 5.52
3604 4058 5.790593 TCAGTCAGATAAAGTAAAAGCGGT 58.209 37.500 0.00 0.00 0.00 5.68
3605 4059 6.927416 TCAGTCAGATAAAGTAAAAGCGGTA 58.073 36.000 0.00 0.00 0.00 4.02
3606 4060 7.380536 TCAGTCAGATAAAGTAAAAGCGGTAA 58.619 34.615 0.00 0.00 0.00 2.85
3607 4061 8.038944 TCAGTCAGATAAAGTAAAAGCGGTAAT 58.961 33.333 0.00 0.00 0.00 1.89
3608 4062 8.116753 CAGTCAGATAAAGTAAAAGCGGTAATG 58.883 37.037 0.00 0.00 0.00 1.90
3609 4063 7.822822 AGTCAGATAAAGTAAAAGCGGTAATGT 59.177 33.333 0.00 0.00 0.00 2.71
3613 4067 8.880750 AGATAAAGTAAAAGCGGTAATGTTCTC 58.119 33.333 0.00 0.00 0.00 2.87
3621 4075 3.961408 AGCGGTAATGTTCTCCACTCTAT 59.039 43.478 0.00 0.00 0.00 1.98
3622 4076 4.038162 AGCGGTAATGTTCTCCACTCTATC 59.962 45.833 0.00 0.00 0.00 2.08
3624 4078 4.262079 CGGTAATGTTCTCCACTCTATCCC 60.262 50.000 0.00 0.00 0.00 3.85
3625 4079 4.262079 GGTAATGTTCTCCACTCTATCCCG 60.262 50.000 0.00 0.00 0.00 5.14
3627 4081 2.376109 TGTTCTCCACTCTATCCCGTC 58.624 52.381 0.00 0.00 0.00 4.79
3628 4082 1.682323 GTTCTCCACTCTATCCCGTCC 59.318 57.143 0.00 0.00 0.00 4.79
3631 4085 2.024273 TCTCCACTCTATCCCGTCCTTT 60.024 50.000 0.00 0.00 0.00 3.11
3633 4087 2.764572 TCCACTCTATCCCGTCCTTTTC 59.235 50.000 0.00 0.00 0.00 2.29
3635 4089 3.430929 CCACTCTATCCCGTCCTTTTCTG 60.431 52.174 0.00 0.00 0.00 3.02
3639 4093 2.514458 ATCCCGTCCTTTTCTGCATT 57.486 45.000 0.00 0.00 0.00 3.56
3640 4094 1.533625 TCCCGTCCTTTTCTGCATTG 58.466 50.000 0.00 0.00 0.00 2.82
3641 4095 0.109132 CCCGTCCTTTTCTGCATTGC 60.109 55.000 0.46 0.46 0.00 3.56
3643 4097 1.135575 CCGTCCTTTTCTGCATTGCTC 60.136 52.381 10.49 0.00 0.00 4.26
3645 4099 2.159599 CGTCCTTTTCTGCATTGCTCTC 60.160 50.000 10.49 0.00 0.00 3.20
3648 4102 4.094146 GTCCTTTTCTGCATTGCTCTCTAC 59.906 45.833 10.49 0.00 0.00 2.59
3650 4104 4.094590 CCTTTTCTGCATTGCTCTCTACTG 59.905 45.833 10.49 0.00 0.00 2.74
3651 4105 3.969287 TTCTGCATTGCTCTCTACTGT 57.031 42.857 10.49 0.00 0.00 3.55
3654 4108 5.604758 TCTGCATTGCTCTCTACTGTATT 57.395 39.130 10.49 0.00 0.00 1.89
3655 4109 5.595885 TCTGCATTGCTCTCTACTGTATTC 58.404 41.667 10.49 0.00 0.00 1.75
3657 4111 5.354767 TGCATTGCTCTCTACTGTATTCTG 58.645 41.667 10.49 0.00 0.00 3.02
3658 4112 5.105187 TGCATTGCTCTCTACTGTATTCTGT 60.105 40.000 10.49 0.00 0.00 3.41
3660 4114 6.640499 GCATTGCTCTCTACTGTATTCTGTAG 59.360 42.308 0.16 9.29 43.06 2.74
3661 4115 7.469318 GCATTGCTCTCTACTGTATTCTGTAGA 60.469 40.741 15.16 15.16 45.78 2.59
3670 4124 9.256228 TCTACTGTATTCTGTAGAGTTTTCCAT 57.744 33.333 12.91 0.00 44.34 3.41
3673 4127 9.036980 ACTGTATTCTGTAGAGTTTTCCATACT 57.963 33.333 0.00 0.00 0.00 2.12
3678 4132 8.603242 TTCTGTAGAGTTTTCCATACTTTGTC 57.397 34.615 0.00 0.00 0.00 3.18
3679 4133 7.732025 TCTGTAGAGTTTTCCATACTTTGTCA 58.268 34.615 0.00 0.00 0.00 3.58
3681 4135 8.322906 TGTAGAGTTTTCCATACTTTGTCATG 57.677 34.615 0.00 0.00 0.00 3.07
3684 4138 6.150140 AGAGTTTTCCATACTTTGTCATGAGC 59.850 38.462 0.00 0.00 0.00 4.26
3685 4139 6.006449 AGTTTTCCATACTTTGTCATGAGCT 58.994 36.000 0.00 0.00 0.00 4.09
3686 4140 6.491403 AGTTTTCCATACTTTGTCATGAGCTT 59.509 34.615 0.00 0.00 0.00 3.74
3687 4141 6.500684 TTTCCATACTTTGTCATGAGCTTC 57.499 37.500 0.00 0.00 0.00 3.86
3690 4144 4.269603 CCATACTTTGTCATGAGCTTCGAG 59.730 45.833 0.00 0.00 0.00 4.04
3691 4145 3.393089 ACTTTGTCATGAGCTTCGAGT 57.607 42.857 0.00 0.00 0.00 4.18
3693 4147 3.006323 ACTTTGTCATGAGCTTCGAGTCT 59.994 43.478 0.00 0.00 0.00 3.24
3694 4148 2.929531 TGTCATGAGCTTCGAGTCTC 57.070 50.000 0.00 8.53 0.00 3.36
3695 4149 2.441410 TGTCATGAGCTTCGAGTCTCT 58.559 47.619 14.42 0.00 0.00 3.10
3696 4150 3.610911 TGTCATGAGCTTCGAGTCTCTA 58.389 45.455 14.42 4.85 0.00 2.43
3697 4151 3.625313 TGTCATGAGCTTCGAGTCTCTAG 59.375 47.826 14.42 8.70 0.00 2.43
3698 4152 2.616376 TCATGAGCTTCGAGTCTCTAGC 59.384 50.000 13.23 13.23 0.00 3.42
3699 4153 1.384525 TGAGCTTCGAGTCTCTAGCC 58.615 55.000 16.07 10.56 34.19 3.93
3700 4154 1.340114 TGAGCTTCGAGTCTCTAGCCA 60.340 52.381 16.07 12.29 34.19 4.75
3701 4155 1.953686 GAGCTTCGAGTCTCTAGCCAT 59.046 52.381 16.07 3.76 34.19 4.40
3702 4156 1.680735 AGCTTCGAGTCTCTAGCCATG 59.319 52.381 16.07 0.00 34.19 3.66
3703 4157 1.678627 GCTTCGAGTCTCTAGCCATGA 59.321 52.381 11.01 0.00 0.00 3.07
3704 4158 2.295909 GCTTCGAGTCTCTAGCCATGAT 59.704 50.000 11.01 0.00 0.00 2.45
3705 4159 3.504134 GCTTCGAGTCTCTAGCCATGATA 59.496 47.826 11.01 0.00 0.00 2.15
3706 4160 4.022762 GCTTCGAGTCTCTAGCCATGATAA 60.023 45.833 11.01 0.00 0.00 1.75
3707 4161 5.697473 TTCGAGTCTCTAGCCATGATAAG 57.303 43.478 0.00 0.00 0.00 1.73
3708 4162 4.720046 TCGAGTCTCTAGCCATGATAAGT 58.280 43.478 0.00 0.00 0.00 2.24
3709 4163 5.866207 TCGAGTCTCTAGCCATGATAAGTA 58.134 41.667 0.00 0.00 0.00 2.24
3710 4164 5.935206 TCGAGTCTCTAGCCATGATAAGTAG 59.065 44.000 0.00 0.00 0.00 2.57
3724 4178 5.250982 TGATAAGTAGGTGAAGACGACAGA 58.749 41.667 0.00 0.00 0.00 3.41
3728 4182 5.061920 AGTAGGTGAAGACGACAGATTTC 57.938 43.478 0.00 0.00 0.00 2.17
3731 4185 3.056465 AGGTGAAGACGACAGATTTCCTC 60.056 47.826 0.00 0.00 0.00 3.71
3749 4203 1.590238 CTCAGAAATCGTAAGCAGCGG 59.410 52.381 0.00 0.00 37.18 5.52
3750 4204 0.026803 CAGAAATCGTAAGCAGCGGC 59.973 55.000 0.00 0.00 41.61 6.53
3751 4205 0.391130 AGAAATCGTAAGCAGCGGCA 60.391 50.000 12.44 0.00 44.61 5.69
3852 4311 2.034179 AGTGCTTAAAGTGGAAAACGGC 59.966 45.455 0.00 0.00 0.00 5.68
3855 4314 3.049912 GCTTAAAGTGGAAAACGGCTTG 58.950 45.455 0.00 0.00 0.00 4.01
3856 4315 3.490249 GCTTAAAGTGGAAAACGGCTTGT 60.490 43.478 0.00 0.00 0.00 3.16
3857 4316 4.678622 CTTAAAGTGGAAAACGGCTTGTT 58.321 39.130 0.00 0.00 44.59 2.83
3871 4330 3.990318 GCTTGTTTCTGTAAGCACCTT 57.010 42.857 0.00 0.00 46.43 3.50
3872 4331 3.632189 GCTTGTTTCTGTAAGCACCTTG 58.368 45.455 0.00 0.00 46.43 3.61
3873 4332 3.632189 CTTGTTTCTGTAAGCACCTTGC 58.368 45.455 0.00 0.00 45.46 4.01
3886 4345 4.644103 GCACCTTGCATCTGTTGATTAT 57.356 40.909 0.00 0.00 44.26 1.28
3887 4346 5.002464 GCACCTTGCATCTGTTGATTATT 57.998 39.130 0.00 0.00 44.26 1.40
3888 4347 6.135290 GCACCTTGCATCTGTTGATTATTA 57.865 37.500 0.00 0.00 44.26 0.98
3889 4348 6.563422 GCACCTTGCATCTGTTGATTATTAA 58.437 36.000 0.00 0.00 44.26 1.40
3890 4349 7.035004 GCACCTTGCATCTGTTGATTATTAAA 58.965 34.615 0.00 0.00 44.26 1.52
3891 4350 7.545265 GCACCTTGCATCTGTTGATTATTAAAA 59.455 33.333 0.00 0.00 44.26 1.52
3892 4351 9.421806 CACCTTGCATCTGTTGATTATTAAAAA 57.578 29.630 0.00 0.00 0.00 1.94
3916 4375 6.867662 AAATCATATAGAAACTCAAGCCGG 57.132 37.500 0.00 0.00 0.00 6.13
3917 4376 3.728845 TCATATAGAAACTCAAGCCGGC 58.271 45.455 21.89 21.89 0.00 6.13
3918 4377 3.133901 TCATATAGAAACTCAAGCCGGCA 59.866 43.478 31.54 7.07 0.00 5.69
3919 4378 2.489938 ATAGAAACTCAAGCCGGCAA 57.510 45.000 31.54 12.89 0.00 4.52
3920 4379 2.264005 TAGAAACTCAAGCCGGCAAA 57.736 45.000 31.54 12.48 0.00 3.68
3921 4380 1.620822 AGAAACTCAAGCCGGCAAAT 58.379 45.000 31.54 11.91 0.00 2.32
3922 4381 2.790433 AGAAACTCAAGCCGGCAAATA 58.210 42.857 31.54 10.04 0.00 1.40
3923 4382 3.153919 AGAAACTCAAGCCGGCAAATAA 58.846 40.909 31.54 8.07 0.00 1.40
3924 4383 3.191371 AGAAACTCAAGCCGGCAAATAAG 59.809 43.478 31.54 19.57 0.00 1.73
3925 4384 2.489938 ACTCAAGCCGGCAAATAAGA 57.510 45.000 31.54 14.99 0.00 2.10
3926 4385 2.359900 ACTCAAGCCGGCAAATAAGAG 58.640 47.619 31.54 24.59 0.00 2.85
3927 4386 2.290323 ACTCAAGCCGGCAAATAAGAGT 60.290 45.455 31.54 25.20 0.00 3.24
3928 4387 2.083774 TCAAGCCGGCAAATAAGAGTG 58.916 47.619 31.54 11.47 0.00 3.51
3929 4388 1.812571 CAAGCCGGCAAATAAGAGTGT 59.187 47.619 31.54 0.00 0.00 3.55
3930 4389 1.453155 AGCCGGCAAATAAGAGTGTG 58.547 50.000 31.54 0.00 0.00 3.82
3931 4390 0.451783 GCCGGCAAATAAGAGTGTGG 59.548 55.000 24.80 0.00 0.00 4.17
3932 4391 1.948611 GCCGGCAAATAAGAGTGTGGA 60.949 52.381 24.80 0.00 0.00 4.02
3933 4392 1.737793 CCGGCAAATAAGAGTGTGGAC 59.262 52.381 0.00 0.00 0.00 4.02
3934 4393 2.422597 CGGCAAATAAGAGTGTGGACA 58.577 47.619 0.00 0.00 0.00 4.02
3935 4394 2.811431 CGGCAAATAAGAGTGTGGACAA 59.189 45.455 0.00 0.00 0.00 3.18
3936 4395 3.120199 CGGCAAATAAGAGTGTGGACAAG 60.120 47.826 0.00 0.00 0.00 3.16
3937 4396 3.191371 GGCAAATAAGAGTGTGGACAAGG 59.809 47.826 0.00 0.00 0.00 3.61
3938 4397 3.366374 GCAAATAAGAGTGTGGACAAGGC 60.366 47.826 0.00 0.00 0.00 4.35
3939 4398 2.386661 ATAAGAGTGTGGACAAGGCG 57.613 50.000 0.00 0.00 0.00 5.52
3940 4399 0.320421 TAAGAGTGTGGACAAGGCGC 60.320 55.000 0.00 0.00 0.00 6.53
3941 4400 2.280797 GAGTGTGGACAAGGCGCA 60.281 61.111 10.83 0.00 0.00 6.09
3942 4401 2.281070 AGTGTGGACAAGGCGCAG 60.281 61.111 10.83 0.00 0.00 5.18
3955 4414 4.789075 CGCAGCAGCAACCATGGC 62.789 66.667 13.04 0.00 42.27 4.40
3956 4415 4.446413 GCAGCAGCAACCATGGCC 62.446 66.667 13.04 0.00 41.58 5.36
3957 4416 4.124351 CAGCAGCAACCATGGCCG 62.124 66.667 13.04 3.80 0.00 6.13
3973 4432 3.566853 CGCCACGGTATGCAGCAG 61.567 66.667 0.00 0.00 0.00 4.24
3974 4433 2.125147 GCCACGGTATGCAGCAGA 60.125 61.111 0.00 0.00 0.00 4.26
3975 4434 2.176273 GCCACGGTATGCAGCAGAG 61.176 63.158 0.00 0.00 0.00 3.35
3976 4435 2.176273 CCACGGTATGCAGCAGAGC 61.176 63.158 9.24 9.24 0.00 4.09
3977 4436 2.176273 CACGGTATGCAGCAGAGCC 61.176 63.158 13.44 7.96 0.00 4.70
3978 4437 2.187685 CGGTATGCAGCAGAGCCA 59.812 61.111 13.44 0.00 0.00 4.75
3979 4438 1.886313 CGGTATGCAGCAGAGCCAG 60.886 63.158 13.44 0.00 0.00 4.85
3980 4439 1.525535 GGTATGCAGCAGAGCCAGG 60.526 63.158 8.06 0.00 0.00 4.45
3981 4440 1.524002 GTATGCAGCAGAGCCAGGA 59.476 57.895 0.00 0.00 0.00 3.86
3982 4441 0.532417 GTATGCAGCAGAGCCAGGAG 60.532 60.000 0.00 0.00 0.00 3.69
3983 4442 1.693152 TATGCAGCAGAGCCAGGAGG 61.693 60.000 0.00 0.00 38.23 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 136 0.037326 ATCACGCGAAGAAAGCTGGA 60.037 50.000 15.93 0.00 0.00 3.86
437 455 1.520787 CCTAACAACCTAGCGGCGG 60.521 63.158 9.78 0.00 0.00 6.13
502 527 3.123959 GCGACAAACAAGCGAATAACCTA 59.876 43.478 0.00 0.00 0.00 3.08
503 528 2.095919 GCGACAAACAAGCGAATAACCT 60.096 45.455 0.00 0.00 0.00 3.50
504 529 2.239201 GCGACAAACAAGCGAATAACC 58.761 47.619 0.00 0.00 0.00 2.85
536 571 9.923786 CCTCGTAATTCTCAGATAATATACTCG 57.076 37.037 0.00 0.00 0.00 4.18
608 643 2.231716 TTCGGGATCTCAGAGACCAA 57.768 50.000 16.47 5.25 0.00 3.67
611 646 2.222886 TCGATTCGGGATCTCAGAGAC 58.777 52.381 0.91 0.00 32.30 3.36
616 651 1.000171 CTGCATCGATTCGGGATCTCA 60.000 52.381 6.18 0.00 32.30 3.27
675 711 4.154918 CCCAGCTTATGAGAGAACAAACAC 59.845 45.833 0.00 0.00 0.00 3.32
677 713 3.127721 GCCCAGCTTATGAGAGAACAAAC 59.872 47.826 0.00 0.00 0.00 2.93
681 717 2.998316 AGCCCAGCTTATGAGAGAAC 57.002 50.000 0.00 0.00 33.89 3.01
797 841 1.538047 GAATCAGCAGTTCAGCCCAA 58.462 50.000 0.00 0.00 34.23 4.12
831 875 4.157840 GGAAGCTAAACAACCCATCGAAAT 59.842 41.667 0.00 0.00 0.00 2.17
841 885 6.651225 ACATTCTACTCAGGAAGCTAAACAAC 59.349 38.462 0.00 0.00 0.00 3.32
915 959 2.738743 CTGTAGCCATGACCCCAAATT 58.261 47.619 0.00 0.00 0.00 1.82
916 960 1.686115 GCTGTAGCCATGACCCCAAAT 60.686 52.381 0.00 0.00 34.31 2.32
921 965 1.767759 AATTGCTGTAGCCATGACCC 58.232 50.000 0.80 0.00 41.18 4.46
932 981 5.011329 ACATGATGAGGAACAAAATTGCTGT 59.989 36.000 0.00 0.00 0.00 4.40
942 991 7.239763 TCTAGTTACAACATGATGAGGAACA 57.760 36.000 10.29 5.65 0.00 3.18
943 992 7.602644 TGTTCTAGTTACAACATGATGAGGAAC 59.397 37.037 10.29 10.17 0.00 3.62
952 1001 7.865707 AGAAAAGCTGTTCTAGTTACAACATG 58.134 34.615 17.94 0.00 36.06 3.21
1271 1321 7.581213 ATGAATGTTCACTAAGAAAACACCA 57.419 32.000 0.00 0.00 40.49 4.17
1373 1423 1.601759 GAAGGCAGGCAGAGCACAA 60.602 57.895 0.00 0.00 0.00 3.33
1419 1469 5.193679 AGCAGGGTGGAAATAACAGATAAC 58.806 41.667 0.00 0.00 0.00 1.89
1462 1512 5.648092 ACCATTGTTGTTCTATCTAACAGGC 59.352 40.000 0.00 0.00 40.29 4.85
1513 1563 2.692273 AAAGGACAGGTGAACCGGGC 62.692 60.000 6.32 0.41 42.08 6.13
1516 1566 5.080969 TCTATAAAAGGACAGGTGAACCG 57.919 43.478 0.00 0.00 42.08 4.44
1690 1742 2.422093 GGATCTCTTTTAGGTGGCCCAG 60.422 54.545 0.00 0.00 0.00 4.45
1714 1766 5.717654 ACCCAAACCACTCAAACTAGAAAAA 59.282 36.000 0.00 0.00 0.00 1.94
1715 1767 5.265989 ACCCAAACCACTCAAACTAGAAAA 58.734 37.500 0.00 0.00 0.00 2.29
1716 1768 4.862371 ACCCAAACCACTCAAACTAGAAA 58.138 39.130 0.00 0.00 0.00 2.52
1717 1769 4.513406 ACCCAAACCACTCAAACTAGAA 57.487 40.909 0.00 0.00 0.00 2.10
1718 1770 4.513406 AACCCAAACCACTCAAACTAGA 57.487 40.909 0.00 0.00 0.00 2.43
1719 1771 5.414765 GGATAACCCAAACCACTCAAACTAG 59.585 44.000 0.00 0.00 34.14 2.57
1720 1772 5.073965 AGGATAACCCAAACCACTCAAACTA 59.926 40.000 0.00 0.00 37.41 2.24
1721 1773 4.141018 AGGATAACCCAAACCACTCAAACT 60.141 41.667 0.00 0.00 37.41 2.66
1722 1774 4.149598 AGGATAACCCAAACCACTCAAAC 58.850 43.478 0.00 0.00 37.41 2.93
1723 1775 4.463050 AGGATAACCCAAACCACTCAAA 57.537 40.909 0.00 0.00 37.41 2.69
1724 1776 5.789574 ATAGGATAACCCAAACCACTCAA 57.210 39.130 0.00 0.00 37.41 3.02
1725 1777 5.968167 AGTATAGGATAACCCAAACCACTCA 59.032 40.000 0.00 0.00 37.41 3.41
1726 1778 6.496144 AGTATAGGATAACCCAAACCACTC 57.504 41.667 0.00 0.00 37.41 3.51
1727 1779 6.903340 AAGTATAGGATAACCCAAACCACT 57.097 37.500 0.00 0.00 37.41 4.00
1728 1780 9.281371 GATAAAGTATAGGATAACCCAAACCAC 57.719 37.037 0.00 0.00 37.41 4.16
1729 1781 8.442374 GGATAAAGTATAGGATAACCCAAACCA 58.558 37.037 0.00 0.00 37.41 3.67
1730 1782 8.666821 AGGATAAAGTATAGGATAACCCAAACC 58.333 37.037 0.00 0.00 37.41 3.27
1731 1783 9.722184 GAGGATAAAGTATAGGATAACCCAAAC 57.278 37.037 0.00 0.00 37.41 2.93
1732 1784 9.684702 AGAGGATAAAGTATAGGATAACCCAAA 57.315 33.333 0.00 0.00 37.41 3.28
1733 1785 9.322769 GAGAGGATAAAGTATAGGATAACCCAA 57.677 37.037 0.00 0.00 37.41 4.12
1734 1786 8.689054 AGAGAGGATAAAGTATAGGATAACCCA 58.311 37.037 0.00 0.00 37.41 4.51
1735 1787 9.549984 AAGAGAGGATAAAGTATAGGATAACCC 57.450 37.037 0.00 0.00 36.73 4.11
1761 1813 8.933653 AGTGGATCTAAATTCTTTTCCCAAAAA 58.066 29.630 0.00 0.00 33.42 1.94
1762 1814 8.491045 AGTGGATCTAAATTCTTTTCCCAAAA 57.509 30.769 0.00 0.00 0.00 2.44
1763 1815 7.728083 TGAGTGGATCTAAATTCTTTTCCCAAA 59.272 33.333 0.00 0.00 0.00 3.28
1764 1816 7.237982 TGAGTGGATCTAAATTCTTTTCCCAA 58.762 34.615 0.00 0.00 0.00 4.12
1765 1817 6.789268 TGAGTGGATCTAAATTCTTTTCCCA 58.211 36.000 0.00 0.00 0.00 4.37
1766 1818 7.557719 TGATGAGTGGATCTAAATTCTTTTCCC 59.442 37.037 0.00 0.00 0.00 3.97
1767 1819 8.511604 TGATGAGTGGATCTAAATTCTTTTCC 57.488 34.615 0.00 0.00 0.00 3.13
1768 1820 9.947669 CATGATGAGTGGATCTAAATTCTTTTC 57.052 33.333 0.00 0.00 0.00 2.29
1769 1821 8.411683 GCATGATGAGTGGATCTAAATTCTTTT 58.588 33.333 0.00 0.00 0.00 2.27
1770 1822 7.014038 GGCATGATGAGTGGATCTAAATTCTTT 59.986 37.037 0.00 0.00 0.00 2.52
1771 1823 6.489361 GGCATGATGAGTGGATCTAAATTCTT 59.511 38.462 0.00 0.00 0.00 2.52
1772 1824 6.002704 GGCATGATGAGTGGATCTAAATTCT 58.997 40.000 0.00 0.00 0.00 2.40
1773 1825 5.182760 GGGCATGATGAGTGGATCTAAATTC 59.817 44.000 0.00 0.00 0.00 2.17
1774 1826 5.075493 GGGCATGATGAGTGGATCTAAATT 58.925 41.667 0.00 0.00 0.00 1.82
1775 1827 4.105217 TGGGCATGATGAGTGGATCTAAAT 59.895 41.667 0.00 0.00 0.00 1.40
1776 1828 3.459227 TGGGCATGATGAGTGGATCTAAA 59.541 43.478 0.00 0.00 0.00 1.85
1777 1829 3.047857 TGGGCATGATGAGTGGATCTAA 58.952 45.455 0.00 0.00 0.00 2.10
1778 1830 2.693210 TGGGCATGATGAGTGGATCTA 58.307 47.619 0.00 0.00 0.00 1.98
1779 1831 1.514983 TGGGCATGATGAGTGGATCT 58.485 50.000 0.00 0.00 0.00 2.75
1780 1832 2.581216 ATGGGCATGATGAGTGGATC 57.419 50.000 0.00 0.00 0.00 3.36
1781 1833 3.138839 TGTTATGGGCATGATGAGTGGAT 59.861 43.478 0.00 0.00 0.00 3.41
1782 1834 2.509131 TGTTATGGGCATGATGAGTGGA 59.491 45.455 0.00 0.00 0.00 4.02
1783 1835 2.620115 GTGTTATGGGCATGATGAGTGG 59.380 50.000 0.00 0.00 0.00 4.00
1784 1836 3.548770 AGTGTTATGGGCATGATGAGTG 58.451 45.455 0.00 0.00 0.00 3.51
1785 1837 3.939740 AGTGTTATGGGCATGATGAGT 57.060 42.857 0.00 0.00 0.00 3.41
1786 1838 3.949754 ACAAGTGTTATGGGCATGATGAG 59.050 43.478 0.00 0.00 0.00 2.90
1787 1839 3.695556 CACAAGTGTTATGGGCATGATGA 59.304 43.478 0.00 0.00 0.00 2.92
1788 1840 3.695556 TCACAAGTGTTATGGGCATGATG 59.304 43.478 0.00 0.00 0.00 3.07
1789 1841 3.966979 TCACAAGTGTTATGGGCATGAT 58.033 40.909 0.00 0.00 0.00 2.45
1828 1880 2.758979 CAGGAGTACATGTTACGACCCT 59.241 50.000 2.30 2.38 0.00 4.34
1855 2012 5.826601 TCAACAAGAAAGTGCACATAACA 57.173 34.783 21.04 0.00 0.00 2.41
1857 2014 5.009911 AGCATCAACAAGAAAGTGCACATAA 59.990 36.000 21.04 0.00 35.17 1.90
1859 2016 3.319972 AGCATCAACAAGAAAGTGCACAT 59.680 39.130 21.04 3.48 35.17 3.21
1871 2028 5.068855 TGGACATTGAGAAAAGCATCAACAA 59.931 36.000 0.00 0.00 38.19 2.83
1916 2073 3.976704 CCATAAAGGGCCACACAGA 57.023 52.632 6.18 0.00 0.00 3.41
1935 2092 5.981174 ACCAAAAGATGATTTTATGGCAGG 58.019 37.500 0.00 0.00 0.00 4.85
2006 2168 4.437682 ACTTTGAAAGACCACATCCAGA 57.562 40.909 12.53 0.00 0.00 3.86
2030 2192 9.195411 CCGAATTACTAACAGTGTTACAACTTA 57.805 33.333 11.75 0.00 0.00 2.24
2031 2193 7.712205 ACCGAATTACTAACAGTGTTACAACTT 59.288 33.333 11.75 3.90 0.00 2.66
2032 2194 7.212274 ACCGAATTACTAACAGTGTTACAACT 58.788 34.615 11.75 0.00 0.00 3.16
2033 2195 7.412137 ACCGAATTACTAACAGTGTTACAAC 57.588 36.000 11.75 1.03 0.00 3.32
2124 2467 3.598019 AAACAACATCATCCATGCCAC 57.402 42.857 0.00 0.00 35.65 5.01
2182 2532 8.307483 AGGTGTTGTCTATCATATGCTACATAC 58.693 37.037 0.00 3.03 0.00 2.39
2186 2536 6.749139 TCAGGTGTTGTCTATCATATGCTAC 58.251 40.000 0.00 0.00 0.00 3.58
2219 2570 4.238514 AGAAGGAAGATTGAGACGAAACG 58.761 43.478 0.00 0.00 0.00 3.60
2263 2614 2.966516 CCCCTCATGGTCCTACTAAGTC 59.033 54.545 0.00 0.00 0.00 3.01
2280 2631 2.502538 CAAATGATGCATCCAAACCCCT 59.497 45.455 23.67 0.00 0.00 4.79
2283 2634 4.824289 AGAACAAATGATGCATCCAAACC 58.176 39.130 23.67 7.26 0.00 3.27
2336 2687 7.442656 AGGAATATCGACACCTAAACATTAGG 58.557 38.462 13.35 13.35 40.49 2.69
2385 2736 9.213799 GAACATACCAATTAAAATGGCAGAAAA 57.786 29.630 9.87 0.00 41.89 2.29
2386 2737 8.592809 AGAACATACCAATTAAAATGGCAGAAA 58.407 29.630 9.87 0.00 41.89 2.52
2389 2740 6.980397 GGAGAACATACCAATTAAAATGGCAG 59.020 38.462 9.87 4.17 41.89 4.85
2757 3206 0.616371 TATGACGGTGGTTTCTGGGG 59.384 55.000 0.00 0.00 0.00 4.96
2771 3220 8.954950 AGCAGTTTATGATATGGCTATATGAC 57.045 34.615 7.38 0.00 29.67 3.06
2772 3221 9.387257 CAAGCAGTTTATGATATGGCTATATGA 57.613 33.333 7.38 0.00 29.67 2.15
2773 3222 8.127327 GCAAGCAGTTTATGATATGGCTATATG 58.873 37.037 7.38 0.00 29.67 1.78
2774 3223 8.051535 AGCAAGCAGTTTATGATATGGCTATAT 58.948 33.333 1.63 1.63 30.51 0.86
2775 3224 7.397221 AGCAAGCAGTTTATGATATGGCTATA 58.603 34.615 0.00 0.00 30.51 1.31
2776 3225 6.243900 AGCAAGCAGTTTATGATATGGCTAT 58.756 36.000 0.00 0.00 30.51 2.97
2777 3226 5.624159 AGCAAGCAGTTTATGATATGGCTA 58.376 37.500 0.00 0.00 30.51 3.93
2778 3227 4.467769 AGCAAGCAGTTTATGATATGGCT 58.532 39.130 0.00 0.00 0.00 4.75
2779 3228 4.843220 AGCAAGCAGTTTATGATATGGC 57.157 40.909 0.00 0.00 0.00 4.40
2780 3229 6.656270 TGGATAGCAAGCAGTTTATGATATGG 59.344 38.462 0.00 0.00 0.00 2.74
2781 3230 7.677454 TGGATAGCAAGCAGTTTATGATATG 57.323 36.000 0.00 0.00 0.00 1.78
2782 3231 8.874744 AATGGATAGCAAGCAGTTTATGATAT 57.125 30.769 0.00 0.00 0.00 1.63
2783 3232 9.964354 ATAATGGATAGCAAGCAGTTTATGATA 57.036 29.630 0.00 0.00 0.00 2.15
2793 3242 6.301486 ACAGATCAATAATGGATAGCAAGCA 58.699 36.000 0.00 0.00 0.00 3.91
2801 3250 7.414222 AACAAGCAACAGATCAATAATGGAT 57.586 32.000 0.00 0.00 0.00 3.41
2821 3270 6.559810 CAAGACCTGTACAACATCAAAACAA 58.440 36.000 0.00 0.00 0.00 2.83
2899 3348 2.022764 TGTACATGTGGGCAATCTCG 57.977 50.000 9.11 0.00 0.00 4.04
3110 3562 5.894298 ACTAGTGGCAATTGATGATAGGA 57.106 39.130 10.34 0.00 0.00 2.94
3238 3690 7.637511 AGAAGATAAATCTGGACAAGGTCATT 58.362 34.615 0.00 0.00 37.19 2.57
3295 3747 4.970003 CGAAGAACAACCAAACTGAACATC 59.030 41.667 0.00 0.00 0.00 3.06
3379 3831 2.487934 AGCTAATATGCAGAGCCAACG 58.512 47.619 8.57 0.00 36.87 4.10
3550 4004 5.048643 GCAGCTAAGATTATACTCCGTCTGA 60.049 44.000 0.00 0.00 0.00 3.27
3555 4009 3.057456 ACGGCAGCTAAGATTATACTCCG 60.057 47.826 0.00 0.00 39.07 4.63
3568 4022 0.970427 TGACTGATGGACGGCAGCTA 60.970 55.000 0.00 0.00 35.57 3.32
3572 4026 1.775385 TATCTGACTGATGGACGGCA 58.225 50.000 5.16 0.00 36.65 5.69
3573 4027 2.890808 TTATCTGACTGATGGACGGC 57.109 50.000 5.16 0.00 36.65 5.68
3574 4028 4.392921 ACTTTATCTGACTGATGGACGG 57.607 45.455 5.16 0.00 36.65 4.79
3575 4029 7.464710 GCTTTTACTTTATCTGACTGATGGACG 60.465 40.741 5.16 0.00 36.65 4.79
3576 4030 7.464710 CGCTTTTACTTTATCTGACTGATGGAC 60.465 40.741 5.16 0.00 36.65 4.02
3577 4031 6.535150 CGCTTTTACTTTATCTGACTGATGGA 59.465 38.462 5.16 0.00 36.65 3.41
3578 4032 6.238211 CCGCTTTTACTTTATCTGACTGATGG 60.238 42.308 5.16 0.00 36.65 3.51
3579 4033 6.313905 ACCGCTTTTACTTTATCTGACTGATG 59.686 38.462 5.16 0.00 36.65 3.07
3580 4034 6.407202 ACCGCTTTTACTTTATCTGACTGAT 58.593 36.000 0.19 0.19 39.11 2.90
3581 4035 5.790593 ACCGCTTTTACTTTATCTGACTGA 58.209 37.500 0.00 0.00 0.00 3.41
3582 4036 7.591006 TTACCGCTTTTACTTTATCTGACTG 57.409 36.000 0.00 0.00 0.00 3.51
3584 4038 7.971455 ACATTACCGCTTTTACTTTATCTGAC 58.029 34.615 0.00 0.00 0.00 3.51
3585 4039 8.556213 AACATTACCGCTTTTACTTTATCTGA 57.444 30.769 0.00 0.00 0.00 3.27
3586 4040 8.665685 AGAACATTACCGCTTTTACTTTATCTG 58.334 33.333 0.00 0.00 0.00 2.90
3587 4041 8.788325 AGAACATTACCGCTTTTACTTTATCT 57.212 30.769 0.00 0.00 0.00 1.98
3588 4042 8.121086 GGAGAACATTACCGCTTTTACTTTATC 58.879 37.037 0.00 0.00 0.00 1.75
3589 4043 7.608761 TGGAGAACATTACCGCTTTTACTTTAT 59.391 33.333 0.00 0.00 0.00 1.40
3590 4044 6.935771 TGGAGAACATTACCGCTTTTACTTTA 59.064 34.615 0.00 0.00 0.00 1.85
3591 4045 5.766174 TGGAGAACATTACCGCTTTTACTTT 59.234 36.000 0.00 0.00 0.00 2.66
3592 4046 5.180680 GTGGAGAACATTACCGCTTTTACTT 59.819 40.000 0.00 0.00 0.00 2.24
3593 4047 4.694037 GTGGAGAACATTACCGCTTTTACT 59.306 41.667 0.00 0.00 0.00 2.24
3594 4048 4.694037 AGTGGAGAACATTACCGCTTTTAC 59.306 41.667 0.00 0.00 40.95 2.01
3595 4049 4.901868 AGTGGAGAACATTACCGCTTTTA 58.098 39.130 0.00 0.00 40.95 1.52
3596 4050 3.751518 AGTGGAGAACATTACCGCTTTT 58.248 40.909 0.00 0.00 40.95 2.27
3597 4051 3.008049 AGAGTGGAGAACATTACCGCTTT 59.992 43.478 0.00 0.00 43.29 3.51
3598 4052 2.567615 AGAGTGGAGAACATTACCGCTT 59.432 45.455 0.00 0.00 43.29 4.68
3599 4053 2.180276 AGAGTGGAGAACATTACCGCT 58.820 47.619 0.00 0.00 45.44 5.52
3600 4054 2.674796 AGAGTGGAGAACATTACCGC 57.325 50.000 0.00 0.00 34.83 5.68
3601 4055 4.262079 GGGATAGAGTGGAGAACATTACCG 60.262 50.000 0.00 0.00 0.00 4.02
3602 4056 4.262079 CGGGATAGAGTGGAGAACATTACC 60.262 50.000 0.00 0.00 0.00 2.85
3603 4057 4.341520 ACGGGATAGAGTGGAGAACATTAC 59.658 45.833 0.00 0.00 0.00 1.89
3604 4058 4.543689 ACGGGATAGAGTGGAGAACATTA 58.456 43.478 0.00 0.00 0.00 1.90
3605 4059 3.375699 ACGGGATAGAGTGGAGAACATT 58.624 45.455 0.00 0.00 0.00 2.71
3606 4060 2.959707 GACGGGATAGAGTGGAGAACAT 59.040 50.000 0.00 0.00 0.00 2.71
3607 4061 2.376109 GACGGGATAGAGTGGAGAACA 58.624 52.381 0.00 0.00 0.00 3.18
3608 4062 1.682323 GGACGGGATAGAGTGGAGAAC 59.318 57.143 0.00 0.00 0.00 3.01
3609 4063 1.569548 AGGACGGGATAGAGTGGAGAA 59.430 52.381 0.00 0.00 0.00 2.87
3613 4067 2.766828 AGAAAAGGACGGGATAGAGTGG 59.233 50.000 0.00 0.00 0.00 4.00
3621 4075 1.533625 CAATGCAGAAAAGGACGGGA 58.466 50.000 0.00 0.00 0.00 5.14
3622 4076 0.109132 GCAATGCAGAAAAGGACGGG 60.109 55.000 0.00 0.00 0.00 5.28
3624 4078 1.808945 AGAGCAATGCAGAAAAGGACG 59.191 47.619 8.35 0.00 0.00 4.79
3625 4079 3.080319 AGAGAGCAATGCAGAAAAGGAC 58.920 45.455 8.35 0.00 0.00 3.85
3627 4081 4.094590 CAGTAGAGAGCAATGCAGAAAAGG 59.905 45.833 8.35 0.00 0.00 3.11
3628 4082 4.694509 ACAGTAGAGAGCAATGCAGAAAAG 59.305 41.667 8.35 0.00 0.00 2.27
3631 4085 3.969287 ACAGTAGAGAGCAATGCAGAA 57.031 42.857 8.35 0.00 0.00 3.02
3633 4087 5.462729 CAGAATACAGTAGAGAGCAATGCAG 59.537 44.000 8.35 0.00 0.00 4.41
3635 4089 5.355596 ACAGAATACAGTAGAGAGCAATGC 58.644 41.667 0.00 0.00 0.00 3.56
3648 4102 9.877178 AAGTATGGAAAACTCTACAGAATACAG 57.123 33.333 0.00 0.00 0.00 2.74
3654 4108 7.732025 TGACAAAGTATGGAAAACTCTACAGA 58.268 34.615 0.00 0.00 0.00 3.41
3655 4109 7.962964 TGACAAAGTATGGAAAACTCTACAG 57.037 36.000 0.00 0.00 0.00 2.74
3657 4111 8.547967 TCATGACAAAGTATGGAAAACTCTAC 57.452 34.615 0.00 0.00 0.00 2.59
3658 4112 7.334421 GCTCATGACAAAGTATGGAAAACTCTA 59.666 37.037 0.00 0.00 0.00 2.43
3660 4114 6.150140 AGCTCATGACAAAGTATGGAAAACTC 59.850 38.462 0.00 0.00 0.00 3.01
3661 4115 6.006449 AGCTCATGACAAAGTATGGAAAACT 58.994 36.000 0.00 0.00 0.00 2.66
3662 4116 6.259550 AGCTCATGACAAAGTATGGAAAAC 57.740 37.500 0.00 0.00 0.00 2.43
3666 4120 4.081697 TCGAAGCTCATGACAAAGTATGGA 60.082 41.667 0.00 0.00 0.00 3.41
3667 4121 4.183865 TCGAAGCTCATGACAAAGTATGG 58.816 43.478 0.00 0.00 0.00 2.74
3668 4122 4.867047 ACTCGAAGCTCATGACAAAGTATG 59.133 41.667 0.00 0.00 0.00 2.39
3670 4124 4.218635 AGACTCGAAGCTCATGACAAAGTA 59.781 41.667 0.00 0.00 0.00 2.24
3671 4125 3.006323 AGACTCGAAGCTCATGACAAAGT 59.994 43.478 0.00 0.00 0.00 2.66
3672 4126 3.583806 AGACTCGAAGCTCATGACAAAG 58.416 45.455 0.00 0.00 0.00 2.77
3673 4127 3.256879 AGAGACTCGAAGCTCATGACAAA 59.743 43.478 14.44 0.00 33.62 2.83
3676 4130 3.548014 GCTAGAGACTCGAAGCTCATGAC 60.548 52.174 19.71 0.00 33.62 3.06
3678 4132 2.287547 GGCTAGAGACTCGAAGCTCATG 60.288 54.545 23.60 8.64 32.97 3.07
3679 4133 1.953686 GGCTAGAGACTCGAAGCTCAT 59.046 52.381 23.60 4.89 32.97 2.90
3681 4135 1.384525 TGGCTAGAGACTCGAAGCTC 58.615 55.000 23.60 17.02 32.97 4.09
3684 4138 5.240623 ACTTATCATGGCTAGAGACTCGAAG 59.759 44.000 0.00 0.30 0.00 3.79
3685 4139 5.133941 ACTTATCATGGCTAGAGACTCGAA 58.866 41.667 0.00 0.00 0.00 3.71
3686 4140 4.720046 ACTTATCATGGCTAGAGACTCGA 58.280 43.478 0.00 0.00 0.00 4.04
3687 4141 5.123186 CCTACTTATCATGGCTAGAGACTCG 59.877 48.000 0.00 0.00 0.00 4.18
3690 4144 5.770663 TCACCTACTTATCATGGCTAGAGAC 59.229 44.000 0.00 0.00 0.00 3.36
3691 4145 5.953571 TCACCTACTTATCATGGCTAGAGA 58.046 41.667 0.00 0.00 0.00 3.10
3693 4147 6.265649 GTCTTCACCTACTTATCATGGCTAGA 59.734 42.308 0.00 0.00 0.00 2.43
3694 4148 6.451393 GTCTTCACCTACTTATCATGGCTAG 58.549 44.000 0.00 0.00 0.00 3.42
3695 4149 5.009710 CGTCTTCACCTACTTATCATGGCTA 59.990 44.000 0.00 0.00 0.00 3.93
3696 4150 4.202161 CGTCTTCACCTACTTATCATGGCT 60.202 45.833 0.00 0.00 0.00 4.75
3697 4151 4.051922 CGTCTTCACCTACTTATCATGGC 58.948 47.826 0.00 0.00 0.00 4.40
3698 4152 5.163550 TGTCGTCTTCACCTACTTATCATGG 60.164 44.000 0.00 0.00 0.00 3.66
3699 4153 5.891451 TGTCGTCTTCACCTACTTATCATG 58.109 41.667 0.00 0.00 0.00 3.07
3700 4154 5.886474 TCTGTCGTCTTCACCTACTTATCAT 59.114 40.000 0.00 0.00 0.00 2.45
3701 4155 5.250982 TCTGTCGTCTTCACCTACTTATCA 58.749 41.667 0.00 0.00 0.00 2.15
3702 4156 5.814764 TCTGTCGTCTTCACCTACTTATC 57.185 43.478 0.00 0.00 0.00 1.75
3703 4157 6.777213 AATCTGTCGTCTTCACCTACTTAT 57.223 37.500 0.00 0.00 0.00 1.73
3704 4158 6.349944 GGAAATCTGTCGTCTTCACCTACTTA 60.350 42.308 0.00 0.00 0.00 2.24
3705 4159 5.470047 AAATCTGTCGTCTTCACCTACTT 57.530 39.130 0.00 0.00 0.00 2.24
3706 4160 4.082136 GGAAATCTGTCGTCTTCACCTACT 60.082 45.833 0.00 0.00 0.00 2.57
3707 4161 4.082136 AGGAAATCTGTCGTCTTCACCTAC 60.082 45.833 0.00 0.00 0.00 3.18
3708 4162 4.087182 AGGAAATCTGTCGTCTTCACCTA 58.913 43.478 0.00 0.00 0.00 3.08
3709 4163 2.900546 AGGAAATCTGTCGTCTTCACCT 59.099 45.455 0.00 0.00 0.00 4.00
3710 4164 3.254892 GAGGAAATCTGTCGTCTTCACC 58.745 50.000 0.00 0.00 31.24 4.02
3728 4182 1.590238 CGCTGCTTACGATTTCTGAGG 59.410 52.381 0.00 0.00 0.00 3.86
3731 4185 0.026803 GCCGCTGCTTACGATTTCTG 59.973 55.000 0.00 0.00 33.53 3.02
3749 4203 1.414378 AAAAATAAAGGCGCACGTGC 58.586 45.000 30.42 30.42 37.78 5.34
3750 4204 4.073169 TCTAAAAATAAAGGCGCACGTG 57.927 40.909 12.28 12.28 0.00 4.49
3751 4205 4.155280 ACATCTAAAAATAAAGGCGCACGT 59.845 37.500 10.83 0.00 0.00 4.49
3811 4267 5.123820 GCACTGGTGATTAAGCATAAGTTGA 59.876 40.000 8.13 0.00 35.27 3.18
3812 4268 5.124457 AGCACTGGTGATTAAGCATAAGTTG 59.876 40.000 8.13 6.32 35.27 3.16
3813 4269 5.256474 AGCACTGGTGATTAAGCATAAGTT 58.744 37.500 8.13 0.00 35.27 2.66
3814 4270 4.848357 AGCACTGGTGATTAAGCATAAGT 58.152 39.130 0.00 0.97 35.27 2.24
3852 4311 3.066621 TGCAAGGTGCTTACAGAAACAAG 59.933 43.478 1.43 0.00 45.31 3.16
3855 4314 3.503748 AGATGCAAGGTGCTTACAGAAAC 59.496 43.478 0.00 0.00 45.31 2.78
3856 4315 3.503363 CAGATGCAAGGTGCTTACAGAAA 59.497 43.478 0.00 0.00 45.31 2.52
3857 4316 3.076621 CAGATGCAAGGTGCTTACAGAA 58.923 45.455 0.00 0.00 45.31 3.02
3858 4317 2.038952 ACAGATGCAAGGTGCTTACAGA 59.961 45.455 0.00 0.00 45.31 3.41
3859 4318 2.430465 ACAGATGCAAGGTGCTTACAG 58.570 47.619 0.00 0.00 45.31 2.74
3860 4319 2.553602 CAACAGATGCAAGGTGCTTACA 59.446 45.455 0.00 0.00 45.31 2.41
3861 4320 2.813754 TCAACAGATGCAAGGTGCTTAC 59.186 45.455 0.00 0.00 45.31 2.34
3862 4321 3.138884 TCAACAGATGCAAGGTGCTTA 57.861 42.857 0.00 0.00 45.31 3.09
3863 4322 1.985473 TCAACAGATGCAAGGTGCTT 58.015 45.000 0.00 0.00 45.31 3.91
3864 4323 2.211250 ATCAACAGATGCAAGGTGCT 57.789 45.000 0.00 0.00 45.31 4.40
3865 4324 4.644103 ATAATCAACAGATGCAAGGTGC 57.356 40.909 0.00 0.00 45.29 5.01
3866 4325 8.984891 TTTTAATAATCAACAGATGCAAGGTG 57.015 30.769 0.00 0.00 0.00 4.00
3891 4350 7.682021 GCCGGCTTGAGTTTCTATATGATTTTT 60.682 37.037 22.15 0.00 0.00 1.94
3892 4351 6.238759 GCCGGCTTGAGTTTCTATATGATTTT 60.239 38.462 22.15 0.00 0.00 1.82
3893 4352 5.239525 GCCGGCTTGAGTTTCTATATGATTT 59.760 40.000 22.15 0.00 0.00 2.17
3894 4353 4.757149 GCCGGCTTGAGTTTCTATATGATT 59.243 41.667 22.15 0.00 0.00 2.57
3895 4354 4.202357 TGCCGGCTTGAGTTTCTATATGAT 60.202 41.667 29.70 0.00 0.00 2.45
3896 4355 3.133901 TGCCGGCTTGAGTTTCTATATGA 59.866 43.478 29.70 0.00 0.00 2.15
3897 4356 3.466836 TGCCGGCTTGAGTTTCTATATG 58.533 45.455 29.70 0.00 0.00 1.78
3898 4357 3.838244 TGCCGGCTTGAGTTTCTATAT 57.162 42.857 29.70 0.00 0.00 0.86
3899 4358 3.620427 TTGCCGGCTTGAGTTTCTATA 57.380 42.857 29.70 0.00 0.00 1.31
3900 4359 2.489938 TTGCCGGCTTGAGTTTCTAT 57.510 45.000 29.70 0.00 0.00 1.98
3901 4360 2.264005 TTTGCCGGCTTGAGTTTCTA 57.736 45.000 29.70 0.00 0.00 2.10
3902 4361 1.620822 ATTTGCCGGCTTGAGTTTCT 58.379 45.000 29.70 0.00 0.00 2.52
3903 4362 3.190535 TCTTATTTGCCGGCTTGAGTTTC 59.809 43.478 29.70 0.00 0.00 2.78
3904 4363 3.153919 TCTTATTTGCCGGCTTGAGTTT 58.846 40.909 29.70 7.85 0.00 2.66
3905 4364 2.749621 CTCTTATTTGCCGGCTTGAGTT 59.250 45.455 29.70 8.96 0.00 3.01
3906 4365 2.290323 ACTCTTATTTGCCGGCTTGAGT 60.290 45.455 29.70 24.26 0.00 3.41
3907 4366 2.096496 CACTCTTATTTGCCGGCTTGAG 59.904 50.000 29.70 23.68 0.00 3.02
3908 4367 2.083774 CACTCTTATTTGCCGGCTTGA 58.916 47.619 29.70 13.84 0.00 3.02
3909 4368 1.812571 ACACTCTTATTTGCCGGCTTG 59.187 47.619 29.70 12.15 0.00 4.01
3910 4369 1.812571 CACACTCTTATTTGCCGGCTT 59.187 47.619 29.70 15.01 0.00 4.35
3911 4370 1.453155 CACACTCTTATTTGCCGGCT 58.547 50.000 29.70 10.43 0.00 5.52
3912 4371 0.451783 CCACACTCTTATTTGCCGGC 59.548 55.000 22.73 22.73 0.00 6.13
3913 4372 1.737793 GTCCACACTCTTATTTGCCGG 59.262 52.381 0.00 0.00 0.00 6.13
3914 4373 2.422597 TGTCCACACTCTTATTTGCCG 58.577 47.619 0.00 0.00 0.00 5.69
3915 4374 3.191371 CCTTGTCCACACTCTTATTTGCC 59.809 47.826 0.00 0.00 0.00 4.52
3916 4375 3.366374 GCCTTGTCCACACTCTTATTTGC 60.366 47.826 0.00 0.00 0.00 3.68
3917 4376 3.120199 CGCCTTGTCCACACTCTTATTTG 60.120 47.826 0.00 0.00 0.00 2.32
3918 4377 3.074412 CGCCTTGTCCACACTCTTATTT 58.926 45.455 0.00 0.00 0.00 1.40
3919 4378 2.699954 CGCCTTGTCCACACTCTTATT 58.300 47.619 0.00 0.00 0.00 1.40
3920 4379 1.676014 GCGCCTTGTCCACACTCTTAT 60.676 52.381 0.00 0.00 0.00 1.73
3921 4380 0.320421 GCGCCTTGTCCACACTCTTA 60.320 55.000 0.00 0.00 0.00 2.10
3922 4381 1.598130 GCGCCTTGTCCACACTCTT 60.598 57.895 0.00 0.00 0.00 2.85
3923 4382 2.031163 GCGCCTTGTCCACACTCT 59.969 61.111 0.00 0.00 0.00 3.24
3924 4383 2.280797 TGCGCCTTGTCCACACTC 60.281 61.111 4.18 0.00 0.00 3.51
3925 4384 2.281070 CTGCGCCTTGTCCACACT 60.281 61.111 4.18 0.00 0.00 3.55
3926 4385 4.030452 GCTGCGCCTTGTCCACAC 62.030 66.667 4.18 0.00 0.00 3.82
3927 4386 4.560743 TGCTGCGCCTTGTCCACA 62.561 61.111 4.18 0.00 0.00 4.17
3928 4387 3.730761 CTGCTGCGCCTTGTCCAC 61.731 66.667 4.18 0.00 0.00 4.02
3931 4390 3.663176 TTGCTGCTGCGCCTTGTC 61.663 61.111 4.18 0.00 43.34 3.18
3932 4391 3.969802 GTTGCTGCTGCGCCTTGT 61.970 61.111 4.18 0.00 43.34 3.16
3933 4392 4.712425 GGTTGCTGCTGCGCCTTG 62.712 66.667 17.54 0.00 43.34 3.61
3936 4395 4.789075 CATGGTTGCTGCTGCGCC 62.789 66.667 17.84 17.84 43.34 6.53
3937 4396 4.789075 CCATGGTTGCTGCTGCGC 62.789 66.667 11.21 0.00 43.34 6.09
3938 4397 4.789075 GCCATGGTTGCTGCTGCG 62.789 66.667 14.67 0.00 43.34 5.18
3939 4398 4.446413 GGCCATGGTTGCTGCTGC 62.446 66.667 14.67 8.89 40.20 5.25
3940 4399 4.124351 CGGCCATGGTTGCTGCTG 62.124 66.667 14.67 0.00 0.00 4.41
3956 4415 3.566853 CTGCTGCATACCGTGGCG 61.567 66.667 1.31 0.00 0.00 5.69
3957 4416 2.125147 TCTGCTGCATACCGTGGC 60.125 61.111 1.31 0.00 0.00 5.01
3958 4417 2.176273 GCTCTGCTGCATACCGTGG 61.176 63.158 1.31 0.00 0.00 4.94
3959 4418 2.176273 GGCTCTGCTGCATACCGTG 61.176 63.158 1.31 0.00 34.04 4.94
3960 4419 2.187946 GGCTCTGCTGCATACCGT 59.812 61.111 1.31 0.00 34.04 4.83
3961 4420 1.886313 CTGGCTCTGCTGCATACCG 60.886 63.158 1.31 0.00 34.04 4.02
3962 4421 1.525535 CCTGGCTCTGCTGCATACC 60.526 63.158 1.31 5.78 34.04 2.73
3963 4422 0.532417 CTCCTGGCTCTGCTGCATAC 60.532 60.000 1.31 0.00 34.04 2.39
3964 4423 1.693152 CCTCCTGGCTCTGCTGCATA 61.693 60.000 1.31 0.00 34.04 3.14
3965 4424 2.590645 CTCCTGGCTCTGCTGCAT 59.409 61.111 1.31 0.00 34.04 3.96
3966 4425 3.714001 CCTCCTGGCTCTGCTGCA 61.714 66.667 0.88 0.88 34.04 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.