>input_sequence_39929
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATGGCATCAAAGCGCATCCTCAAGGAACTGAAGGACCTGCAGAAGGACCCGCCCACATCATGCAGCGCAGGT
TTGAATTTGACTTGTTTCCATTGGACATCTATATGCCATACAACACTATCTTCGTTCACACCTTTT-GTTCCCTGCTTTA
TCCTGGCATGTCATCTCATACACTCTAATTTTTGTTTGTAAATTGTTTAGGTCCTGCTGGTGAGGACATGTTTCATTGGC
AAGCAACAATTATGGGACCCCCTGACAGTCCCTATGCCGGTGGTGTTTTCTTAGTGAACATTCATTTCCCTCCGGATTAC
CCCTTCAAGCCACCAAAGGTATAGGACATAGGAGCATCCTCTTATTCGTAAACCCTCATTATTTGTGCTCTGCCTGCCTT
CATAGTCCTTGATATTGTAATCTGGAAAGTTATCTGTTATTTCCACCCTGCTCATCCAGGGAGTTACACTCGCCTGTTAG
ATAGAACAACAATGGTTCTATATTTTCTTAGTCAATTAATCTGCCCGGTTCACCTGTCCTTTTATAGAGTA--GATATCC
TAATAATAGAATACTAACTGCGACACATAAACAATAGGCGATATCAATCTCAATCTCTGATCTCTGGAATATAACTTGCT
TACTAAGGAAACAGCTAATTAATCTTTATCTGCTGCCATATTTGCCTTCTTTGCGACTCTTCTGGGCCACCTAAAAGAGA
TCCATTTTTTCTAGTTTGAGTGGTTTGGGTTATCCTATACTTTATCCTCTCTTTTTTGGGAAAAGAATTTAGATCCACTC
ATCATGCCCATAACACTTGTGATCACCTTTTTGCGTAGAAGGGTCGTAACATGTACTCC---------------------
--------------------------------------------------------------------------------
----TGCTAGGTGTTATGTGCACTTTCTTGTTGATGCTTTTCTCAATGTCCACTCATGGTATTATAACTATCTCTGTGTG
GCCCTTTATGGCCTGCCATAAAATCATCTTTTGGTTATATA---TAGCTAACATGGTATGCAGTGTGTTCTGAAATATCC
TT--CTCTCTGGATGTGGTCTTTCAAAGTTGTAAGTTGTAACACTGTTAGTAATTCG-----------------------
--------------------------------------------------------------------------------
----------------------GTATATAGGATTGTCCTGTT-----------------------------TGTG-----
----------------------AGTAAACACAATCACTTTTCAGTTTTCATGAGGTGGGATAGACAG-------TGGCAT
GGATGATGTTGTTTATGACAGCACTATAATGATCTTGTTGCTGTTGCTAACGTATGTAGCATATGATAGACAACACCTGA
TG-TTTTTTCGTTTCGTCTCAATCTTCCTTCTTGACTAAAATCCACATTGAAGGACTTAGTAGGACCATGAGGGGTTTGG
ATGCATCATTTGTTCTACTATTTGTACATTGCTATAAGTGCAGTATCCTAATGTTTAGGTGTCGATATTCCTCCCTACAA
TGCATTTTAACCCATTTTTCTGCCATTTTAATTGGTATGTTCTCCTTTTAGGTATCTTTTAAGACAAAGGTCTTCCATCC
TAATATCAACAGCAATGGAAGCATATGCCTTGATATTCTTAAGGAGCAGTGGAGCCCTGCTTTGACGATCTCTAAGGTCA
TCCTCGTCACCATCCTCA-TTTCTATTTGCACACATAACTCTCTATATGCTTACTAAAAATACAAGTCACTTGTAGAAGT
CTGCTCCAGTACCACTATTTTTTGCATTACTTGTTTGC------------------------------------------
-------------------------------------TACATGCTATCCCTGCCATATCCTTGTGAAAATCTGCAATATT
TAGGAACACTTTTGTTGTTTAACATGTGAG------------------AGCCAAAAGGAGTGCATGTTTGTTCAGTTTTG
CACTTCCCCAGAAACCACCGTCATATAGCCATATCATAAACTGCTTGCTATCCATTATTGATCTGTTGCTTGTTTTGATG
TTGTACAGGTCTTGCTCTCTATCTGTTCCCTGCTGACCGATCCCAACCCGGATGATCCCCTTGTTCCCGAGATTGCCCAC
ATGTACAAGACGGACCGGTCAAAGTATGAGACGACAGCCCGCAGCTGGACGCAGAAGTACGCCATGGGTT---GA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>chr1D_1_TraesCS1D01G301300
CCACACCACAAAGCGAGGGGCGGACCC-GGAGCAAAAAAGACCACCAAAGGCAGGCGTCCTCCGTCCCTCTGTCCTCGCC
GTCCCCAACCTCTCGCTGCAAAAAGGTGTGGAAACCTTCGCCTCTCTCCCCCC-GTCCAGCTTTCTTCGCGTGATTCTCC
CTGCCCGGTCGCAGATCGGCGCGGGTAA----------GCCCCCTCCCGATCCGGATCCGTCCCCGCCGCCGCCATGTTT
CTCTAGAGTTTTTC----GTTCCGGTGCTTGTTGGTGCCGCCCACCGGTAGATCTGCGCTTTGGTTCGGTTTGGCGCGTC
GCCGCCGCGGTGGGTTCGTGGTTCGATGGG-GGTTTTGTCAGCCGGGGGTCCGATTCGGTGCGCGGCCCCTTGGGGTGAT
TTGACTCGATTGTGTTCGATCTCTCGGGGGCCGCGCGTTTGGTCGTCGTCGCCGCCGCCGCTAGG-------TTGTTAGG
TTATTCACGTTCTCGGCGATGCTTACGTAAAATTATTTGGTGTTGTTAGG------TTATTCGCTTGTTTGTCGCATGCT
TA----CATACGAGTATATTATCTGAGAATTACGAGGATCACTCGTCCAGTCTCATGTATTCATGTGAGGTTCGAGGTTT
ATTTGGTCTCTGAGAT-CCCGAATCGATGCAGGGTTTCCACACCAGTGGCAATTGTGTACTAGTGAGCTAGTGTTTGTTC
TCTCATAAGCTGGGCTTTGTAGTTGCTGTTTACTTTGATCCCTTATTGCCCTTATTACTGAATACATGAGTACATAGGCC
ATGGGAGTATGAAACATTGATAT--------GTTCCTGTGTTGGGCTGAACTGCTGATTCCTACTTCTGATAGGATTTCG
ATGGGTTGTTTAGCTTCCTGAGTAGAATGTTTGAGTTACATTTTCACAGCTATGAGGCTGTGTCATCATCATGGAGTAAA
TTTGGGGT-----CATGGCTACAGCAATTTTGTTCCTCATCATGTTGTAACTAGAACAGCTTTTCTCTCTCCTTCTAGGT
TGCTTGTCATGGCATCAAAGCGCATCCTCAAGGAACTGAAGGACCTGCAGAAGGACCCGCCCACATCATGCAGCGCAGGT
TTGAATTTGACTTGTTTCCATTGGACATCTATATGCCATACAACACTATCTTCGTTCACACCTTTT-GTTCCCTGCTTTA
TCCTGGCATGTCATCTCATACACTCTAATTTTTGTTTGTAAATTGTTTAGGTCCTGCTGGTGAGGACATGTTTCATTGGC
AAGCAACAATTATGGGACCCCCTGACAGTCCCTATGCCGGTGGTGTTTTCTTAGTGAACATTCATTTCCCTCCGGATTAC
CCCTTCAAGCCACCAAAGGTATAGGACATAGGAGCATCCTCTTATTCGTAAACCCTCATTATTTGTGCTCTGCCTGCCTT
CATAGTCCTTGATATTGTAATCTGGAAAGTTATCTGTTATTTCCACCCTGCTCATCCAGGGAGTTACACTCGCCTGTTAG
ATAGAACAACAATGGTTCTATATTTTCTTAGTCAATTAATCTGCCCGGTTCACCTGTCCTTTTATAGAGTA--GATATCC
TAATAATAGAATACTAACTGCGACACATAAACAATAGGCGATATCAATCTCAATCTCTGATCTCTGGAATATAACTTGCT
TACTAAGGAAACAGCTAATTAATCTTTATCTGCTGCCATATTTGCCTTCTTTGCGACTCTTCTGGGCCACCTAAAAGAGA
TCCATTTTTTCTAGTTTGAGTGGTTTGGGTTATCCTATACTTTATCCTCTCTTTTTTGGGAAAAGAATTTAGATCCACTC
ATCATGCCCATAACACTTGTGATCACCTTTTTGCGTAGAAGGGTCGTAACATGTACTCC---------------------
--------------------------------------------------------------------------------
----TGCTAGGTGTTATGTGCACTTTCTTGTTGATGCTTTTCTCAATGTCCACTCATGGTATTATAACTATCTCTGTGTG
GCCCTTTATGGCCTGCCATAAAATCATCTTTTGGTTATATA---TAGCTAACATGGTATGCAGTGTGTTCTGAAATATCC
TT--CTCTCTGGATGTGGTCTTTCAAAGTTGTAAGTTGTAACACTGTTAGTAATTCG-----------------------
--------------------------------------------------------------------------------
----------------------GTATATAGGATTGTCCTGTT-----------------------------TGTG-----
----------------------AGTAAACACAATCACTTTTCAGTTTTCATGAGGTGGGATAGACAG-------TGGCAT
GGATGATGTTGTTTATGACAGCACTATAATGATCTTGTTGCTGTTGCTAACGTATGTAGCATATGATAGACAACACCTGA
TG-TTTTTTCGTTTCGTCTCAATCTTCCTTCTTGACTAAAATCCACATTGAAGGACTTAGTAGGACCATGAGGGGTTTGG
ATGCATCATTTGTTCTACTATTTGTACATTGCTATAAGTGCAGTATCCTAATGTTTAGGTGTCGATATTCCTCCCTACAA
TGCATTTTAACCCATTTTTCTGCCATTTTAATTGGTATGTTCTCCTTTTAGGTATCTTTTAAGACAAAGGTCTTCCATCC
TAATATCAACAGCAATGGAAGCATATGCCTTGATATTCTTAAGGAGCAGTGGAGCCCTGCTTTGACGATCTCTAAGGTCA
TCCTCGTCACCATCCTCA-TTTCTATTTGCACACATAACTCTCTATATGCTTACTAAAAATACAAGTCACTTGTAGAAGT
CTGCTCCAGTACCACTATTTTTTGCATTACTTGTTTGC------------------------------------------
-------------------------------------TACATGCTATCCCTGCCATATCCTTGTGAAAATCTGCAATATT
TAGGAACACTTTTGTTGTTTAACATGTGAG------------------AGCCAAAAGGAGTGCATGTTTGTTCAGTTTTG
CACTTCCCCAGAAACCACCGTCATATAGCCATATCATAAACTGCTTGCTATCCATTATTGATCTGTTGCTTGTTTTGATG
TTGTACAGGTCTTGCTCTCTATCTGTTCCCTGCTGACCGATCCCAACCCGGATGATCCCCTTGTTCCCGAGATTGCCCAC
ATGTACAAGACGGACCGGTCAAAGTATGAGACGACAGCCCGCAGCTGGACGCAGAAGTACGCCATGGGTT---GAAGACC
TGCATCGTGGACAACTGAAATGTCGCTTCAAGAAAAATATTTATGGGCCATTGTTTCTTCGATTTGTTGCTGGTTGTGTG
TAATCCAATCCTCAAGGATTGTAAATTGCATTCGGCGTCGGTCCTATCATCAATTGCCACTAGTATCGGCAGACATGCAT
GCCTATCAGCCTATTCACCTATGCTTGTTGGGTTAACCTTCATCAGTGTTGGTGTTATTTGGTAAATGTTCATTAAAACA
TGTTTGCTTAATGACCTTGTCCAGATTTATCTTCTTTTGGTTTTAGGTCATGTTTTCGTATGTATGGATGTTCAGTTTGG
TTGTTCTTCGCAGCTAAAGCATCAAAGGGTAGTTGCAACTAGCAATATACCAGAAGCTCGCTGCAAAACGCGTTGGCTCT
GCATATTAGCTTTGCCCTAGGTCA-AACTTTGTAAACTTTGGCCATTCATTCAATGATGAATCTGATGTTACTAGTATTG
ATTAGATATTGTAGGTGTTAGTAATTGTTTATAAG-TTACTAGCTTTAATTTAAGACAAAGCTAATATGCAAAGTAAATG
AAATCAGACGGAGTATAATCTTAGCTGCCGTCCATCAGTCAGATAAAGTAAAAGCGGTAATGTTCTCCACTCTATCCCGT
CCTTTTCTGCATTGCTCTCTACTGTATTCTGTAGAGTTTTCCATACTTTGTCATGAGCTTCGAGTCTCTAGCCATGATAA
GTAGGTGAAGACGACAGATTTCCTCAGAAATCGTAAGCAGCGGCA--CGTGCGCCTTTATTTTTAGATGTTTTGAGTGCT
TATATAGGTAGGTGTTTGAAAAATAATCAA-CTTATGCTTAATCACCAGTGCTTAA--AGTGGAAAACGGCTTGTTTCTG
TAAGCACCTTGCATCTGTTGATTATTAAAAAAAATCATATAGAAACTCAAGCCGGCAAATAAGAGTGTGGACAAGGCGCA
GCAGCAACCATGGCCGCCACGGTATGCAGCAGAGCCAGGAGG
>chr1A_1
CCACGCCACAAAGCGAGGGGCGGACCC-GGAGCAAAAAAGACCACCAAAGGCAGGCGTCCTCCGTCCCTCTGTCCTCGCC
GTCCCCAACCTCTCGCTGCAAAA-GGTCTGGAAACCTTCGCCCCCCTCCCCCCCGCCCAGCCTCTTTCGCGTGATTCTCC
CTGCCCGGTCGCAGATCGGCGCGGGTAAGCCCCGCCCCGCCCCCTCCCGATCCGGATCCGTCCCCGCCGCCGCCATGTTT
CTGTAGAGTTTTTCGTCCGTTCCGGTGCTGGTTGGTGCCGCCCACCGGTAGATCTGCGCTTTGGTCCGGGTTGGCGCGTC
GCCGCCGCGGTGGGTTCGTGGTTCGATGGT-GGTTTTGTCAGCCGGGAGTCCGATTTGGTGCGCGGCCCCTTGGGGTGAT
TTGATTCGATTGTGTTCGATCTCTCGGGAGCGTGTTTG------GTCGTCGCCGTCGCCGCTAGGTTGTTACTTGTTAGG
TTATTCACGTTCTTGGCGATGCGCACGTAAAATTATTTGGTGTTGTATAGGCAAGATTATTCGCTTGTTTGTCGCATGCT
TA----CATGTGAGTATATTATCTGAGAATTACGAGGATCAGTCGTCCAGTCTCGTGTATTCATGTGAGGTTCGAGGTTT
ATATGATCTCCGAGATGCCCGAATCGATGCGGGGATTCGACAGCAGTGGCAATTGTGTACTAGTGAGCTACTATTTCTTT
TCTCACAAGCTGGGCTTTGTAGTTGCTGTTTACTTTGATCCCTTGTTACCCTTATTACTGAACACATGAGTGCATGGGCC
ATGGGAGTTTGAAACATTGATATCATGATATGTTCCTGTGCCGGGCTGAGCTGCTGATTCCTACTTCTGATAGGTTTTCG
ATGGATTGTTTAGCTTCCTGAGTAGAATGTTTGAGTTATATTTTCACAGCTATGAGGCTGTGTCATCATCATGGAGTAGC
TTTGAGGTCATAGCATGGCTGCAGCAATTTCATTCCTCAGTATGTTGTAACTAGAACAGCTTTTCTCTCTCCTTCTAGGT
TGCTTGTCATGGCATCAAAGCGCATCCTCAAGGAACTCAAGGACCTGCAGAAGGACCCGCCCACATCATGCAGTGCAGGT
TTGAATTTGACTTGTTTCCATTGGAGATCTAC--GCCATATAACACTATCTTCGTTCACACCTTTTTGTTCCCTGCTTTA
TCCTGGCATGCCATCTCATGGACTCTATTTCTTGTTTGTAAATTGTTTAGGTCCTGCTGGTGAGGACATGTTTCATTGGC
AAGCAACAATTATGGGACCCCCTGACAGTCCCTATGCCGGCGGTGTTTTCTTAGTGAACATTCATTTCCCTCCGGATTAC
CCCTTCAAGCCACCAAAGGTATAGGACTTAGAAGCATCCTCGTATTTGTAAACCCTCATTATGTGTGCTCTGCCTGCTTT
CATAGTCCTTGATATTGTAATCTGGAAATTTATCTGTTATTTCCACCCTGCTCATCCAGGGAGTTACACTCCCGC-CTAG
ATAGAACAACAATGGTTCTAT--TTTCTTAGTCAATTAATCTCGCTGGTTCACCTGCCCTTTTATAGAGTA--GAAATCC
TAATAATAGAATATTAACTGCGACACATAAACAATAGGAGATATCAATCTCAATCTCTGATCTCTAGAATATAACTTGCT
TACGAAGGAAACAGCTAATTAATCTTTATCTGCTGCCATATTTGCCTTCTTTGTGACTCTTTTGGGCCTG----------
--------------------------------------------------------------------------------
-TCATGCCCATAACACTTATGATCACCTTTTTGCGTAGAGGGGGCGTAACATGTACTCCCTCCGTTCGAAATTACTTGTC
TTGGAAATGGATGTATCTAGAACTAAAATACGTCTAGATACATCAGTTTCTGCGACAAGTAATTCCGAACGGAGGGAGTA
CTCCTGATGGGCGCTGTGTGCACTTTCCTGTTAATGCTTTTCTCAATGTCCACTCATGGTATTATAACTATCAGTGTGGC
-CCTTTTATGGATCGCCATAAAATCATCTTTTGGTTATATATATAGTTAACA----------------------------
---------TGGATGTGGTCTTTCAAAGTTG-------CAACACTGTTAGTAATTTG-----------------------
--------------------------------------------------------------------------------
----------------------GTATATAGGATTGTCCTGTTCATAATTTGGTTTACAGGATTGTCCTGTTTGTGTCTTT
CGTCCAGTTTATTTTATCTTAAAGTAAACACAATCACTTTTCAGTTTTCATGAGGTGGGATAGACATGCTATAATGGCAT
GGATGATGTTGTTTATGACAGCACTATTATGATCTTGTTGCTGTTGCTAACATATATAGCATATGGTAGACAACACCTGA
TA-TTATTTTGTTTCGTCTCAATCTTCCTTCTTGACTAAAATCCACATTGAAGAACTTAGTAGGACCATGTGGTGTTTGG
ATGCATCATTTGTTG--CTATTTGTACATTGCTA--AGTGCAGTATTCTAATGTTTAGGTGTCGATATTCCTCCCTACAA
TGCATTTTAATCCATGGTTGTGCCATTTTAATTGGTATGTTCTCTTTTTAGGTATCTTTTAAGACAAAGGTCTTCCATCC
TAATATCAACAGCAATGGAAGCATATGCCTTGATATTCTTAAGGAGCAGTGGAGCCCTGCTTTGACGATCTCCAAGGTCA
TCCTCGTCTCCATCCTCATTTTCTATTTGCACACATAACTCTCTATATGCTTACTAAAAATACAAGTCACTTGTAGAAGT
CTGCTCCAGTACCACTATTTTTTGCATTACTTGTTTGC------------------------------------------
-------------------------------------TACATGCTATCCCTGCCATATCCTTGTGAAAATCTGCAATATT
TAGGGACACTTTTGTTGTTTAACATGTGAGACTGATAAGTTGTTCATAAGCCAAAAGGAGTGCATGTTTGTTCAGTTTTG
CACTTTCCCAGAAACCACC-------------ATCATAAACCGCTTGCTGTCCATTATTGATCTGTTGCATGTTTTGATG
TTGTACAGGTCTTGCTCTCTATCTGCTCCCTGCTGACCGATCCCAACCCGGATGATCCCCTTGTTCCTGAGATTGCCCAC
ATGTACAAGACGGACCGGTCAAAGTACGAGACGACAGCCCGCAGCTGGACGCAGAAGTACGCCATGGGTTGAAGAAGACC
TGCATCGTGGACAACTGAAATGTCGCTTCAAGAAAAATATTTATGGGCCATTGTTTCTTCGATTTGTTGCTGGTTGTGTG
TAATCCGATCCTCAAGGATTGTAAATTGCATTCGGCGTCGGCCCTATCATCAATTGCCACTAGTATCGGCAGACATGCAT
GCCTATCAGCCTATTCACCTATGCTTGTTGGGTTAACCTTCATCGGTGTTGGTGTTATTTGGTAAATGTTCATTAAAACA
TGTTTGCTTCATGACCTTGTCCAGATTTATCTTCTTTTGGTTTTAGGTCATGTTTCGATATGTATGTATGTTCAGTTTTG
TTGTTGTTCGCAGCTAAAGCATCAA-GGGTAGTTGCAACTTGCAATATACCAGAAGCTCGCTGCAAAACGTGTTGGCTCT
GCATATTTGCTTTGCCCCAAGTCA-AACTTTCTAAACTTTGACCATTCATTCAATGATGAATCTAATGTTACTAGCATTG
ATTAGATATTGTAGGTGTCAGTAATTTTTCAAAAGTTTACTAGCTTTAATTCAAGACAAATGCAAAGTCTTTTTAGAGAT
TTCAATATGGACTACAATATGGAGCAAAGTGAGTGAA--------------------------TCTACACTCTAAACTAT
GTTTATATACATCCGTATGTAGTCAATATTAAAATCTTTATAAAGACTTATATTTAGGAATGAAACAGAGTAGCAT----
----GTGAAGACGACAGGTTTGCTGAGAAATCGCAAGCAGCGCGGTGCGTGCGCCTTTATTTTTAGATGTTTTGAGTGCT
TAA--AGGTAGGTGTTTGAAAAATAAATCGGCTTATGCTTAATCACCAGTGCTTAATAAGTGGAAAACGGGTT-------
--------------------------------------------------------------------------------
------------------------------------------
>chr1B_3
--ACACCACAAAGCGAGGGGCGGACCCCGGAGAAAAAAAGACCACCAAAGGCAGGCGTCCTCCGTCCCTCTGTCCTCGCC
GTCCCCAACCTCTCGCTGCAAAA-GGTGTGGAAACCTTCGCCTCCCTCCCCCC-GCCCAGCTTTTTTCGCGTGATTCTCC
CTGCCCGGTCGCAGATCGGCGCGGGTAAGCCCCGCCCCGGGCCCTCCCGATCCGGATCCGTCCCCGCCGCCGCCATGTTT
CCTTAGAGTTTTTC----GTTCCGGTGCTGGTTGGTGCCGCCCACCGGTAGATCTGCGCTTTGGTTCGGTTTGGCGCGTC
GCCGCCGCGGTGGGTTCGTGGTTCGATGGGGGGTTTTGTCAGCCGGGAGTCCGATTCGGTGCGCGGCCCCTTGGAGTGAT
TTGACTCGATTGTGTTCGATATCTCCAGAGCCGCGCGTTTGGTCGTCG---------CCGCTAGG-------TTGTTAGG
TTATTCACGTTCTCTGCGATGCGTGCGTAAAATTATTTGGTCCTGTGTAGATAAGATTATTCGCTTGTTTGTCGCATGCT
TGCTTGCATATGAGTATATTATCTGAGAATTACGAGGATCACTCGTCCAGTCTCATGTATTCATGTGAGGTTCGAGGTTT
ATATGATCTCCGAGATGCCCGAATCGATGGGAGGATTCCACACCAGTGGCAATTGTGTACTAGTGAGCTATTTTTTCTTC
TCTCATAAGCTGGGCTTTGTGGTTGCTGTTTACTTCGATCCCTTATTGCCCTTCTTACTGAATACATGAGTACATAGGCC
ATGGGAGTTTGAAACATTGATAT--------GTTTCTGTGCTGGGCTGAACTGCTGGTTCCTACTTCTGATAGGTTTTCG
ATGGATTGTTTAGCTTCCTGAGTAGAATGTTTGAGTTATATTTTC-----------------------------------
-----------------------------------CTCCTTATGTTGTAACTAGAACATCTTT--TCTCTCCTTCTAGGT
TGCTTGTCATGGCATCAAAGCGCATCCTCAAGGAACTGAAGGACCTGCAGAAGGACCCGCCCACATCATGCAGCGCAGGT
TTGAATTTGACTTGTTTTAATTGGACATCTATATGCCATTCAACACTATCTTCGTTCACACCT-TTTGTTCCCTGTTTTA
TCCTGGCATGCCATCTCATGGACTGTAATTTTTGTTTGTAAATTGTTTAGGTCCTGCTGGTGAGGACATGTTTCATTGGC
AAGCAACAATTATGGGACCCCCTGACAGTCCCTATGCCGGCGGTGTTTTCTTAGTGAACATTCATTTCCCTCCAGATTAC
CCCTTCAAGCCACCAAAGGTATAGGACTCAGGAGCATCCTCTTATTCGCAAACCCTCATTATGTGTGCTCTGCCTGCTTT
CATAGTCCTTGATATTATAATCTGGAAATTTATCTGTTATTTCCACCC---------AGGGAGTTACACTCCCCGGCTAG
ATAGAACAGCAATGGTTCTATATTTTCTTAGTCAATTAATCTCCCTGGTTCACCTGTCCTTTTATAGAGTATGGATATCC
TAATAATAGAATACTAACTGCGACACATAAACAATAGGCGATATCAATATCAATCTCCAATCTCTAGAATATAACTTGCT
TACTAAGGAAACAGCTAATTAATCTGTATCTGCTGCCATATTTGCC--CTTTGCGACTCTTTTGGGCCTG----------
--------------------------------------------------------------------------------
-TCATGCCCATAACACTTGTGATCACCTTTTTGCATAGAGGGGTCGTAACATTTACTCC---------------------
--------------------------------------------------------------------------------
----TGCTAGGCGCTGTGTGCACTTTCCTGATGATGCTTTTCTCAATGTCCACTCATGGTATTATAACTATCAGTGTGGC
-CCTTTTATGGACCGCCATAAAATCATCTTTTGGTTATATATAGTAGCTAACATGGTATGCAGTGTGTTCTGAAATATCC
TTTTCTCCCTGGATGTGGTCTTTCAAAGTTG-------TAACACTGTTAGTAATTTGGTACTCCCTCCGTCCGGAAATAC
TTGTCATCAAAATGAATAAAAGAGGGTGTATCTAGACGTATTTTAGTTCGAGATACATCACCTTTTATCCATTTTGATGA
CAAGTATTTTCGGACGGAGGGAGTATATAGGATTGTCCTGTT-----------------------------TGTGCCTTT
TGTCCAGTTGATCTTAAAGTGAACATGACGTAAACACTTTTCAGTTTTCATGAGGTGGGATAGACATGCTATAATGGCAT
GGGTGATGTTGTTTATGACAGCACTATAATGATCTTGTTGCCGTTGCTAACATATATAGCAATTGGTAGACAACACCTGA
TATTTTTTTTGTTTCGTCTCAATCTTCCTTCTTTACTAAAATCCACATTGAAGAACTTAGGAGGACCATGTGGTGCTTGG
ATGCGTCATTTGTTCTACTATTTGTACATTGCTA--AGTGCAGTATTCTAATGTTTAGGTGTTAATATTCCTCCCTACCA
TGCATTTTAACCAATGCTTGTGCCATTTTAATTGGTATGTTCCCTTTCTAGGTATCTTTTAAGACAAAGGTCTTCCATCC
TAATATCAACAGCAATGGAAGCATATGCCTTGATATTCTTAAGGAGCAGTGGAGCCCTGCTTTGACGATCTCCAAGGTCA
TCCTCGTCACCATCCTCATTTTCTATTTGCACACAACTCTCTCTATATGATTACTAAAAATACTAGTTACTTGTAGAAGT
CTGCTCCAGTACCACTAATTTTTGCATTACTTGTTTGCTACTCCCTCTGTAAACTAGTATAAGAGCATTTAGATCACTAA
AATAGTGATCTAAACGCTCTTATATTAGTTTAGGGCGTACATGCTATCCCTGCCATAT---------------------T
TAGGGACACTTTTGTT----AACATGTGAGACTGACAAGTTGTTCATAAGCCAAAAGGAGTGCATGTTTGTTCAGTTTTG
TACTTTCCCTGAAACC--------------------------GCTTACTGTCCATTATTGATCTGTTGTGTGTTTTGATG
TCATACAGGTCTTGCTCTCTATCTGTTCCCTGCTGACCGATCCCAACCCGGATGATCCCCTTGTTCCTGAGATTGCCCAC
ATGTACAAGACGGACCGGTCAAAGTATGAGACGACAGCCCGCAGCTGGACGCAGAAGTACGCCATGGGTTGAAG---ACC
TGCATCGTGGACAACTGAAATGTCGCTTCAAGAAAAAAATTTATGGGCCATTGTTTCTTCGATTTGTTGCTGGTTGTGTG
TAATCCGATCCTCAAGGATTGTAAATTGCATTCGGCGTCGGCCCTATCATCAATTGCCACTAGTATCGGCAGACATGCAT
GCCTATCAGCCTATTCACCTATGCTTGTTGGGTTAACCTTCATCAGTGTTGGTGTTATTTGGTAAATGTTCATTAAAACA
TGTTTGCTTCATGACCTTGTCCAGATTTATCTTCTTTTGTTTTTAGGTCATGTTTTCGTATGTATGTATGTTCAGTTTGG
TTGTTCTTCGCAGCTAAAGCATCAAAGGGTAGTTGCAACTAGCAATATATCAGAAGCTCGCTGCAAAACGTGTTGGCTTG
GCATATTAGCTTTGCCCTAAGTCAAAACTTTGTAAACTTTAACCATTCATTCAATGATGAATCTATTATTACTAGTATCG
ATTAGATATTGTACTCCACTAGGTAATCGTAATTTTTTCTACAAAAAATTTCTAAC---AGCTAATATGCGAAGTAGATG
AAAACAGAGGGAGTATAATCT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>SNPs
--------------------------------------------------------------------------------
-----------------------S--------------------S----------S--------S---------------
--------------------------------------------------------------------------------
--S--------------------------S--------------------------------------------------
-----------------------------------------------S--------------------------------
----------------------------S-------------------------S-------------------------
----------------------S-----------------------SSS-------------------------------
----------S---------------------------------------------------------------------
--S--S----S-------------------S---S-----------------------------------S-S---S---
--------------------------------------------------------------------------------
--------S-------------------------------S---------------------------------S-----
----S---------------------------------S---------------------------------------SS
----S---------------S---------SS--------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S--------SS-----------------------------------------------------------
----------------------------------------S---------------------------------------
---------------------------S----------------------------------S--------------S--
----------------------------S------------------------------------------S--S-S---
------------------------------------------S--S----------------------------------
-----------------------------------------------------------------S--------------
-------------------------------------------------------------S------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
-----------S-S-S-----------S--------------------------------------------SS----SS
S--S-------S-S------------------------------------------------------------------
-------S-----------------------SSSSSSS-----------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
---------------------------------------------------S---S---------S--------------
-S-------S-------------------------------------------S----------------S--S------
----------------------------------SS----------S---------------------------------
---------------SS--S------------------------S-----------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
-----S-------------SSSSSSSSSSSSS---------S-------S-------------------S----------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S----------------------------------S--------------------------------------
--------------------------------------------------------------------------------
---------S--------------------------------------------------------S-------------
----------------------------------------------------------------------S---------
-------------------S---------------------S----------------------S---------------
------------------S-------S----S-------------------S------------------S---------
---S----S------------S---SSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSS---S-------SS-SS-
SS--S-S-S---SSS-S-S--S-SS--SS-SS-SSS---SSS-SSSS--S-SS-S--SSSS--SS-SSSSSSSSSSSSSS
SSSS-------------S---S--S--------S--------SSS-----------------------------------
--SSS---------------------SSSS----------------------------------------S--SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_125
--------------------------------------------------------------------------------
-------------------------GTGTGGAAACCTTCGCCTCT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>reverse_1831
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AGATCCACTC
ATCATGCCCA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>forward_429
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TTGTGTTCGATCTCTCGGGG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>reverse_2631
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AGGGGTTTGG
ATGCATCATTTG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>forward_1753
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CGACTCTTCTGGGCCACCTA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>reverse_4076
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CCCGT
CCTTTTCTGCATTGC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
