Multiple sequence alignment - TraesCS1D01G299700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G299700 chr1D 100.000 3199 0 0 1 3199 397975178 397971980 0.000000e+00 5908
1 TraesCS1D01G299700 chr1D 99.689 322 1 0 1 322 361184914 361185235 9.880000e-165 590
2 TraesCS1D01G299700 chr1D 99.080 326 3 0 1 326 419079883 419080208 1.280000e-163 586
3 TraesCS1D01G299700 chr1A 87.729 2950 129 91 324 3199 495193858 495191068 0.000000e+00 3227
4 TraesCS1D01G299700 chr1B 91.353 2255 68 40 324 2507 533325592 533323394 0.000000e+00 2966
5 TraesCS1D01G299700 chr1B 90.789 684 38 9 2534 3199 533323417 533322741 0.000000e+00 891
6 TraesCS1D01G299700 chr1B 88.378 413 25 8 2806 3199 1452096 1452504 2.890000e-130 475
7 TraesCS1D01G299700 chr1B 87.651 413 28 8 2806 3199 355094620 355094212 2.910000e-125 459
8 TraesCS1D01G299700 chr3D 99.387 326 2 0 1 326 580612241 580611916 2.750000e-165 592
9 TraesCS1D01G299700 chr3D 99.689 322 1 0 1 322 580617689 580617368 9.880000e-165 590
10 TraesCS1D01G299700 chr3D 88.961 308 34 0 1892 2199 451886117 451886424 6.480000e-102 381
11 TraesCS1D01G299700 chr3D 88.312 308 36 0 1892 2199 451710642 451710949 1.400000e-98 370
12 TraesCS1D01G299700 chr3D 85.498 331 43 5 1243 1570 451885572 451885900 1.100000e-89 340
13 TraesCS1D01G299700 chr3D 84.969 326 45 4 1247 1570 451710100 451710423 8.560000e-86 327
14 TraesCS1D01G299700 chr3D 81.985 272 35 10 1249 1510 157443377 157443110 5.370000e-53 219
15 TraesCS1D01G299700 chr7D 99.689 322 1 0 1 322 626964403 626964724 9.880000e-165 590
16 TraesCS1D01G299700 chr7D 98.788 330 2 2 1 330 626975136 626975463 1.280000e-163 586
17 TraesCS1D01G299700 chr2D 99.689 322 1 0 1 322 648421777 648422098 9.880000e-165 590
18 TraesCS1D01G299700 chr2D 98.784 329 3 1 1 328 571223498 571223170 4.600000e-163 584
19 TraesCS1D01G299700 chr2D 81.346 327 42 16 1247 1559 27837049 27837370 6.850000e-62 248
20 TraesCS1D01G299700 chr6D 99.688 321 1 0 1 321 58738253 58737933 3.550000e-164 588
21 TraesCS1D01G299700 chr6D 82.099 324 44 12 1882 2196 396010795 396010477 6.800000e-67 265
22 TraesCS1D01G299700 chr3B 88.971 408 27 10 2806 3199 377073327 377073730 3.710000e-134 488
23 TraesCS1D01G299700 chr3B 85.266 414 34 11 2806 3198 87705989 87705582 4.970000e-108 401
24 TraesCS1D01G299700 chr3B 89.935 308 31 0 1892 2199 593164400 593164707 6.430000e-107 398
25 TraesCS1D01G299700 chr3B 89.286 308 33 0 1892 2199 593541864 593542171 1.390000e-103 387
26 TraesCS1D01G299700 chr3B 85.538 325 43 4 1247 1569 593163819 593164141 1.420000e-88 337
27 TraesCS1D01G299700 chr3B 85.538 325 43 4 1247 1569 593541303 593541625 1.420000e-88 337
28 TraesCS1D01G299700 chr3B 78.899 327 55 10 1249 1565 228690784 228690462 3.230000e-50 209
29 TraesCS1D01G299700 chr4A 87.409 413 29 8 2806 3199 740379637 740380045 1.350000e-123 453
30 TraesCS1D01G299700 chr4A 87.379 412 29 6 2806 3198 717603440 717603033 4.870000e-123 451
31 TraesCS1D01G299700 chr4A 89.370 254 17 5 2955 3199 646064269 646064017 8.620000e-81 311
32 TraesCS1D01G299700 chr5B 86.441 413 33 8 2806 3199 93064138 93064546 6.340000e-117 431
33 TraesCS1D01G299700 chr5B 81.538 325 46 8 1248 1559 662036909 662036586 4.100000e-64 255
34 TraesCS1D01G299700 chr2B 86.441 413 33 8 2806 3199 763145513 763145105 6.340000e-117 431
35 TraesCS1D01G299700 chr4B 85.990 414 33 13 2806 3199 672981618 672982026 1.370000e-113 420
36 TraesCS1D01G299700 chr3A 88.636 308 35 0 1892 2199 594493031 594493338 3.010000e-100 375
37 TraesCS1D01G299700 chr3A 85.890 326 42 4 1247 1570 594492469 594492792 8.500000e-91 344
38 TraesCS1D01G299700 chr6A 82.390 318 49 7 1882 2195 542430372 542430058 1.460000e-68 270
39 TraesCS1D01G299700 chr5D 82.154 325 44 8 1248 1559 526572112 526571789 1.890000e-67 267
40 TraesCS1D01G299700 chr5A 81.173 324 49 8 1248 1559 653717127 653716804 1.910000e-62 250
41 TraesCS1D01G299700 chr2A 81.346 327 42 16 1247 1559 29989773 29990094 6.850000e-62 248
42 TraesCS1D01G299700 chr6B 79.941 339 48 13 1247 1566 592464708 592464371 6.900000e-57 231
43 TraesCS1D01G299700 chr7B 78.986 276 42 11 1250 1512 530441091 530441363 1.180000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G299700 chr1D 397971980 397975178 3198 True 5908.0 5908 100.0000 1 3199 1 chr1D.!!$R1 3198
1 TraesCS1D01G299700 chr1A 495191068 495193858 2790 True 3227.0 3227 87.7290 324 3199 1 chr1A.!!$R1 2875
2 TraesCS1D01G299700 chr1B 533322741 533325592 2851 True 1928.5 2966 91.0710 324 3199 2 chr1B.!!$R2 2875
3 TraesCS1D01G299700 chr3D 451885572 451886424 852 False 360.5 381 87.2295 1243 2199 2 chr3D.!!$F2 956
4 TraesCS1D01G299700 chr3D 451710100 451710949 849 False 348.5 370 86.6405 1247 2199 2 chr3D.!!$F1 952
5 TraesCS1D01G299700 chr3B 593163819 593164707 888 False 367.5 398 87.7365 1247 2199 2 chr3B.!!$F2 952
6 TraesCS1D01G299700 chr3B 593541303 593542171 868 False 362.0 387 87.4120 1247 2199 2 chr3B.!!$F3 952
7 TraesCS1D01G299700 chr3A 594492469 594493338 869 False 359.5 375 87.2630 1247 2199 2 chr3A.!!$F1 952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 416 0.036577 GTGGACACATCTGCTCTGCT 60.037 55.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2271 2479 0.167033 ACGCACGCGAATGCAAAATA 59.833 45.0 19.66 0.0 46.47 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.458872 GTCGCCTTCATCATCACCA 57.541 52.632 0.00 0.00 0.00 4.17
19 20 1.959042 GTCGCCTTCATCATCACCAT 58.041 50.000 0.00 0.00 0.00 3.55
20 21 1.600957 GTCGCCTTCATCATCACCATG 59.399 52.381 0.00 0.00 0.00 3.66
21 22 1.210234 TCGCCTTCATCATCACCATGT 59.790 47.619 0.00 0.00 0.00 3.21
22 23 1.600957 CGCCTTCATCATCACCATGTC 59.399 52.381 0.00 0.00 0.00 3.06
23 24 1.952296 GCCTTCATCATCACCATGTCC 59.048 52.381 0.00 0.00 0.00 4.02
24 25 2.684630 GCCTTCATCATCACCATGTCCA 60.685 50.000 0.00 0.00 0.00 4.02
25 26 2.947652 CCTTCATCATCACCATGTCCAC 59.052 50.000 0.00 0.00 0.00 4.02
26 27 2.715749 TCATCATCACCATGTCCACC 57.284 50.000 0.00 0.00 0.00 4.61
27 28 1.134431 TCATCATCACCATGTCCACCG 60.134 52.381 0.00 0.00 0.00 4.94
28 29 1.134431 CATCATCACCATGTCCACCGA 60.134 52.381 0.00 0.00 0.00 4.69
29 30 0.249120 TCATCACCATGTCCACCGAC 59.751 55.000 0.00 0.00 39.66 4.79
30 31 1.083806 CATCACCATGTCCACCGACG 61.084 60.000 0.00 0.00 42.37 5.12
31 32 2.852495 ATCACCATGTCCACCGACGC 62.852 60.000 0.00 0.00 42.37 5.19
32 33 4.388499 ACCATGTCCACCGACGCC 62.388 66.667 0.00 0.00 42.37 5.68
34 35 4.429212 CATGTCCACCGACGCCGA 62.429 66.667 0.00 0.00 42.37 5.54
35 36 3.687102 ATGTCCACCGACGCCGAA 61.687 61.111 0.00 0.00 42.37 4.30
36 37 3.927163 ATGTCCACCGACGCCGAAC 62.927 63.158 0.00 0.00 42.37 3.95
57 58 3.788766 CCGCCGCCGAGAAAACTG 61.789 66.667 0.00 0.00 36.29 3.16
58 59 2.736995 CGCCGCCGAGAAAACTGA 60.737 61.111 0.00 0.00 36.29 3.41
59 60 2.314647 CGCCGCCGAGAAAACTGAA 61.315 57.895 0.00 0.00 36.29 3.02
60 61 1.497722 GCCGCCGAGAAAACTGAAG 59.502 57.895 0.00 0.00 0.00 3.02
61 62 1.497722 CCGCCGAGAAAACTGAAGC 59.502 57.895 0.00 0.00 0.00 3.86
62 63 0.951040 CCGCCGAGAAAACTGAAGCT 60.951 55.000 0.00 0.00 0.00 3.74
63 64 0.164647 CGCCGAGAAAACTGAAGCTG 59.835 55.000 0.00 0.00 0.00 4.24
64 65 1.512926 GCCGAGAAAACTGAAGCTGA 58.487 50.000 0.00 0.00 0.00 4.26
65 66 1.195674 GCCGAGAAAACTGAAGCTGAC 59.804 52.381 0.00 0.00 0.00 3.51
66 67 2.483876 CCGAGAAAACTGAAGCTGACA 58.516 47.619 0.00 0.00 0.00 3.58
67 68 2.872245 CCGAGAAAACTGAAGCTGACAA 59.128 45.455 0.00 0.00 0.00 3.18
68 69 3.059325 CCGAGAAAACTGAAGCTGACAAG 60.059 47.826 0.00 0.00 0.00 3.16
69 70 3.804325 CGAGAAAACTGAAGCTGACAAGA 59.196 43.478 0.00 0.00 0.00 3.02
70 71 4.271049 CGAGAAAACTGAAGCTGACAAGAA 59.729 41.667 0.00 0.00 0.00 2.52
71 72 5.557893 CGAGAAAACTGAAGCTGACAAGAAG 60.558 44.000 0.00 0.00 0.00 2.85
72 73 4.578105 AGAAAACTGAAGCTGACAAGAAGG 59.422 41.667 0.00 0.00 0.00 3.46
73 74 1.889545 ACTGAAGCTGACAAGAAGGC 58.110 50.000 0.00 0.00 0.00 4.35
74 75 1.163554 CTGAAGCTGACAAGAAGGCC 58.836 55.000 0.00 0.00 0.00 5.19
75 76 0.603707 TGAAGCTGACAAGAAGGCCG 60.604 55.000 0.00 0.00 0.00 6.13
76 77 1.916697 GAAGCTGACAAGAAGGCCGC 61.917 60.000 0.00 0.00 0.00 6.53
77 78 3.435186 GCTGACAAGAAGGCCGCC 61.435 66.667 0.00 0.00 0.00 6.13
78 79 3.121030 CTGACAAGAAGGCCGCCG 61.121 66.667 3.05 0.00 0.00 6.46
79 80 3.589654 CTGACAAGAAGGCCGCCGA 62.590 63.158 3.05 0.00 0.00 5.54
80 81 2.815647 GACAAGAAGGCCGCCGAG 60.816 66.667 3.05 0.00 0.00 4.63
81 82 4.394712 ACAAGAAGGCCGCCGAGG 62.395 66.667 3.05 0.00 44.97 4.63
82 83 4.082523 CAAGAAGGCCGCCGAGGA 62.083 66.667 3.05 0.00 45.00 3.71
102 103 4.047059 CCGCTGCTGCCACCAAAG 62.047 66.667 10.24 0.00 35.36 2.77
103 104 4.712425 CGCTGCTGCCACCAAAGC 62.712 66.667 10.24 0.00 39.96 3.51
104 105 4.368543 GCTGCTGCCACCAAAGCC 62.369 66.667 3.85 0.00 38.71 4.35
105 106 4.047059 CTGCTGCCACCAAAGCCG 62.047 66.667 0.00 0.00 38.71 5.52
125 126 2.914289 GCCTCTGCATGGCCTACT 59.086 61.111 17.19 0.00 44.32 2.57
126 127 1.525535 GCCTCTGCATGGCCTACTG 60.526 63.158 17.19 0.00 44.32 2.74
127 128 1.147824 CCTCTGCATGGCCTACTGG 59.852 63.158 3.32 0.00 0.00 4.00
128 129 1.340399 CCTCTGCATGGCCTACTGGA 61.340 60.000 3.32 0.00 34.57 3.86
129 130 0.106335 CTCTGCATGGCCTACTGGAG 59.894 60.000 3.32 9.91 34.57 3.86
131 132 2.335092 CTGCATGGCCTACTGGAGGG 62.335 65.000 8.30 0.00 46.81 4.30
132 133 2.378634 GCATGGCCTACTGGAGGGT 61.379 63.158 8.30 0.00 46.81 4.34
133 134 1.054406 GCATGGCCTACTGGAGGGTA 61.054 60.000 8.30 0.00 46.81 3.69
134 135 1.734655 CATGGCCTACTGGAGGGTAT 58.265 55.000 8.30 0.00 46.81 2.73
135 136 2.902608 CATGGCCTACTGGAGGGTATA 58.097 52.381 8.30 0.00 46.81 1.47
136 137 3.248024 CATGGCCTACTGGAGGGTATAA 58.752 50.000 8.30 0.00 46.81 0.98
137 138 2.686119 TGGCCTACTGGAGGGTATAAC 58.314 52.381 8.30 0.00 46.81 1.89
138 139 2.249214 TGGCCTACTGGAGGGTATAACT 59.751 50.000 8.30 0.00 46.81 2.24
139 140 2.898612 GGCCTACTGGAGGGTATAACTC 59.101 54.545 8.30 0.00 46.81 3.01
140 141 2.557490 GCCTACTGGAGGGTATAACTCG 59.443 54.545 8.30 0.00 46.81 4.18
141 142 3.830121 CCTACTGGAGGGTATAACTCGT 58.170 50.000 0.00 0.00 42.39 4.18
142 143 4.213513 CCTACTGGAGGGTATAACTCGTT 58.786 47.826 0.00 0.00 42.39 3.85
143 144 4.648307 CCTACTGGAGGGTATAACTCGTTT 59.352 45.833 0.00 0.00 42.39 3.60
144 145 5.829924 CCTACTGGAGGGTATAACTCGTTTA 59.170 44.000 0.00 0.00 42.39 2.01
145 146 6.492772 CCTACTGGAGGGTATAACTCGTTTAT 59.507 42.308 0.00 0.00 42.39 1.40
146 147 6.402456 ACTGGAGGGTATAACTCGTTTATC 57.598 41.667 0.00 0.00 35.82 1.75
147 148 5.303845 ACTGGAGGGTATAACTCGTTTATCC 59.696 44.000 0.00 0.00 35.82 2.59
148 149 4.590222 TGGAGGGTATAACTCGTTTATCCC 59.410 45.833 13.15 13.15 37.57 3.85
149 150 4.321527 GGAGGGTATAACTCGTTTATCCCG 60.322 50.000 14.11 0.00 39.82 5.14
150 151 3.006217 AGGGTATAACTCGTTTATCCCGC 59.994 47.826 14.11 8.31 39.82 6.13
151 152 3.006217 GGGTATAACTCGTTTATCCCGCT 59.994 47.826 0.00 0.00 32.41 5.52
152 153 4.233005 GGTATAACTCGTTTATCCCGCTC 58.767 47.826 0.00 0.00 32.31 5.03
153 154 2.877043 TAACTCGTTTATCCCGCTCC 57.123 50.000 0.00 0.00 0.00 4.70
154 155 1.192428 AACTCGTTTATCCCGCTCCT 58.808 50.000 0.00 0.00 0.00 3.69
155 156 2.062971 ACTCGTTTATCCCGCTCCTA 57.937 50.000 0.00 0.00 0.00 2.94
156 157 1.680207 ACTCGTTTATCCCGCTCCTAC 59.320 52.381 0.00 0.00 0.00 3.18
157 158 1.955080 CTCGTTTATCCCGCTCCTACT 59.045 52.381 0.00 0.00 0.00 2.57
158 159 1.679680 TCGTTTATCCCGCTCCTACTG 59.320 52.381 0.00 0.00 0.00 2.74
159 160 1.407979 CGTTTATCCCGCTCCTACTGT 59.592 52.381 0.00 0.00 0.00 3.55
160 161 2.159142 CGTTTATCCCGCTCCTACTGTT 60.159 50.000 0.00 0.00 0.00 3.16
161 162 3.677976 CGTTTATCCCGCTCCTACTGTTT 60.678 47.826 0.00 0.00 0.00 2.83
162 163 4.259356 GTTTATCCCGCTCCTACTGTTTT 58.741 43.478 0.00 0.00 0.00 2.43
163 164 2.693267 ATCCCGCTCCTACTGTTTTC 57.307 50.000 0.00 0.00 0.00 2.29
164 165 1.640917 TCCCGCTCCTACTGTTTTCT 58.359 50.000 0.00 0.00 0.00 2.52
165 166 1.275291 TCCCGCTCCTACTGTTTTCTG 59.725 52.381 0.00 0.00 0.00 3.02
166 167 1.002087 CCCGCTCCTACTGTTTTCTGT 59.998 52.381 0.00 0.00 36.09 3.41
167 168 2.550208 CCCGCTCCTACTGTTTTCTGTT 60.550 50.000 0.00 0.00 34.05 3.16
168 169 3.139077 CCGCTCCTACTGTTTTCTGTTT 58.861 45.455 0.00 0.00 34.05 2.83
169 170 3.564225 CCGCTCCTACTGTTTTCTGTTTT 59.436 43.478 0.00 0.00 34.05 2.43
170 171 4.753107 CCGCTCCTACTGTTTTCTGTTTTA 59.247 41.667 0.00 0.00 34.05 1.52
171 172 5.107065 CCGCTCCTACTGTTTTCTGTTTTAG 60.107 44.000 0.00 0.00 34.05 1.85
172 173 5.614887 CGCTCCTACTGTTTTCTGTTTTAGC 60.615 44.000 0.00 0.00 34.05 3.09
173 174 5.334957 GCTCCTACTGTTTTCTGTTTTAGCC 60.335 44.000 0.00 0.00 34.05 3.93
174 175 5.686753 TCCTACTGTTTTCTGTTTTAGCCA 58.313 37.500 0.00 0.00 34.05 4.75
175 176 6.303839 TCCTACTGTTTTCTGTTTTAGCCAT 58.696 36.000 0.00 0.00 34.05 4.40
176 177 6.206634 TCCTACTGTTTTCTGTTTTAGCCATG 59.793 38.462 0.00 0.00 34.05 3.66
177 178 4.620982 ACTGTTTTCTGTTTTAGCCATGC 58.379 39.130 0.00 0.00 0.00 4.06
178 179 4.342092 ACTGTTTTCTGTTTTAGCCATGCT 59.658 37.500 0.00 0.00 43.41 3.79
179 180 5.534654 ACTGTTTTCTGTTTTAGCCATGCTA 59.465 36.000 0.00 0.00 40.44 3.49
180 181 6.012658 TGTTTTCTGTTTTAGCCATGCTAG 57.987 37.500 0.00 0.00 42.34 3.42
181 182 4.701956 TTTCTGTTTTAGCCATGCTAGC 57.298 40.909 8.10 8.10 42.34 3.42
182 183 2.279741 TCTGTTTTAGCCATGCTAGCG 58.720 47.619 10.77 0.00 42.34 4.26
183 184 2.009774 CTGTTTTAGCCATGCTAGCGT 58.990 47.619 10.77 6.99 42.34 5.07
184 185 2.420022 CTGTTTTAGCCATGCTAGCGTT 59.580 45.455 6.73 0.00 42.34 4.84
185 186 3.601435 TGTTTTAGCCATGCTAGCGTTA 58.399 40.909 6.73 0.00 42.34 3.18
186 187 4.196193 TGTTTTAGCCATGCTAGCGTTAT 58.804 39.130 6.73 0.00 42.34 1.89
187 188 5.361427 TGTTTTAGCCATGCTAGCGTTATA 58.639 37.500 6.73 0.00 42.34 0.98
188 189 5.235616 TGTTTTAGCCATGCTAGCGTTATAC 59.764 40.000 6.73 0.00 42.34 1.47
189 190 2.065993 AGCCATGCTAGCGTTATACG 57.934 50.000 6.73 0.00 40.32 3.06
190 191 1.340248 AGCCATGCTAGCGTTATACGT 59.660 47.619 6.73 0.00 39.78 3.57
191 192 2.555325 AGCCATGCTAGCGTTATACGTA 59.445 45.455 6.73 0.00 39.78 3.57
192 193 2.915463 GCCATGCTAGCGTTATACGTAG 59.085 50.000 6.73 0.00 44.73 3.51
193 194 3.365666 GCCATGCTAGCGTTATACGTAGA 60.366 47.826 6.73 0.00 44.73 2.59
194 195 4.674623 GCCATGCTAGCGTTATACGTAGAT 60.675 45.833 6.73 0.00 44.73 1.98
195 196 5.029014 CCATGCTAGCGTTATACGTAGATC 58.971 45.833 6.73 0.00 44.73 2.75
196 197 5.163744 CCATGCTAGCGTTATACGTAGATCT 60.164 44.000 6.73 0.00 44.73 2.75
197 198 5.936686 TGCTAGCGTTATACGTAGATCTT 57.063 39.130 10.77 0.00 44.73 2.40
198 199 6.309712 TGCTAGCGTTATACGTAGATCTTT 57.690 37.500 10.77 0.00 44.73 2.52
199 200 6.369005 TGCTAGCGTTATACGTAGATCTTTC 58.631 40.000 10.77 0.00 44.73 2.62
200 201 6.204301 TGCTAGCGTTATACGTAGATCTTTCT 59.796 38.462 10.77 0.00 44.73 2.52
201 202 6.520447 GCTAGCGTTATACGTAGATCTTTCTG 59.480 42.308 0.00 0.00 44.73 3.02
202 203 5.213675 AGCGTTATACGTAGATCTTTCTGC 58.786 41.667 0.00 0.00 44.73 4.26
203 204 4.974275 GCGTTATACGTAGATCTTTCTGCA 59.026 41.667 0.00 0.00 44.73 4.41
204 205 5.457799 GCGTTATACGTAGATCTTTCTGCAA 59.542 40.000 0.00 0.00 44.73 4.08
205 206 6.144080 GCGTTATACGTAGATCTTTCTGCAAT 59.856 38.462 0.00 0.00 44.73 3.56
206 207 7.306632 GCGTTATACGTAGATCTTTCTGCAATT 60.307 37.037 0.00 0.00 44.73 2.32
207 208 9.177304 CGTTATACGTAGATCTTTCTGCAATTA 57.823 33.333 0.00 0.00 36.74 1.40
209 210 5.975410 ACGTAGATCTTTCTGCAATTAGC 57.025 39.130 0.00 0.00 45.96 3.09
223 224 5.251999 GCAATTAGCGTAGTATGTGCTAC 57.748 43.478 0.00 0.00 40.65 3.58
224 225 4.982916 GCAATTAGCGTAGTATGTGCTACT 59.017 41.667 6.69 0.00 40.65 2.57
225 226 5.462398 GCAATTAGCGTAGTATGTGCTACTT 59.538 40.000 6.69 1.82 40.65 2.24
226 227 6.018994 GCAATTAGCGTAGTATGTGCTACTTT 60.019 38.462 6.69 0.00 40.65 2.66
227 228 7.337718 CAATTAGCGTAGTATGTGCTACTTTG 58.662 38.462 6.69 5.81 40.65 2.77
228 229 4.713824 AGCGTAGTATGTGCTACTTTGA 57.286 40.909 6.69 0.00 41.10 2.69
229 230 4.421948 AGCGTAGTATGTGCTACTTTGAC 58.578 43.478 6.69 0.00 41.10 3.18
230 231 4.158025 AGCGTAGTATGTGCTACTTTGACT 59.842 41.667 6.69 0.00 41.10 3.41
231 232 4.265556 GCGTAGTATGTGCTACTTTGACTG 59.734 45.833 6.69 0.00 41.10 3.51
232 233 5.637809 CGTAGTATGTGCTACTTTGACTGA 58.362 41.667 6.69 0.00 41.10 3.41
233 234 6.090783 CGTAGTATGTGCTACTTTGACTGAA 58.909 40.000 6.69 0.00 41.10 3.02
234 235 6.752351 CGTAGTATGTGCTACTTTGACTGAAT 59.248 38.462 6.69 0.00 41.10 2.57
235 236 7.913821 CGTAGTATGTGCTACTTTGACTGAATA 59.086 37.037 6.69 0.00 41.10 1.75
236 237 9.751542 GTAGTATGTGCTACTTTGACTGAATAT 57.248 33.333 1.64 0.00 41.10 1.28
237 238 8.879342 AGTATGTGCTACTTTGACTGAATATC 57.121 34.615 0.00 0.00 37.39 1.63
238 239 8.478066 AGTATGTGCTACTTTGACTGAATATCA 58.522 33.333 0.00 0.00 37.39 2.15
254 255 8.868635 CTGAATATCAGTATGCGATCATATGT 57.131 34.615 1.90 0.00 39.58 2.29
255 256 8.638685 TGAATATCAGTATGCGATCATATGTG 57.361 34.615 1.90 0.00 37.49 3.21
256 257 8.253113 TGAATATCAGTATGCGATCATATGTGT 58.747 33.333 1.90 0.00 37.49 3.72
257 258 8.640091 AATATCAGTATGCGATCATATGTGTC 57.360 34.615 1.90 2.05 37.49 3.67
258 259 5.452078 TCAGTATGCGATCATATGTGTCA 57.548 39.130 1.90 0.00 37.49 3.58
259 260 5.841810 TCAGTATGCGATCATATGTGTCAA 58.158 37.500 1.90 0.00 37.49 3.18
260 261 6.458210 TCAGTATGCGATCATATGTGTCAAT 58.542 36.000 1.90 2.94 37.49 2.57
261 262 6.366877 TCAGTATGCGATCATATGTGTCAATG 59.633 38.462 1.90 0.00 37.49 2.82
262 263 3.883631 TGCGATCATATGTGTCAATGC 57.116 42.857 1.90 3.24 0.00 3.56
263 264 2.549329 TGCGATCATATGTGTCAATGCC 59.451 45.455 1.90 0.00 0.00 4.40
264 265 2.549329 GCGATCATATGTGTCAATGCCA 59.451 45.455 1.90 0.00 0.00 4.92
265 266 3.189910 GCGATCATATGTGTCAATGCCAT 59.810 43.478 1.90 0.00 0.00 4.40
266 267 4.719040 CGATCATATGTGTCAATGCCATG 58.281 43.478 1.90 0.00 0.00 3.66
267 268 3.994204 TCATATGTGTCAATGCCATGC 57.006 42.857 1.90 0.00 0.00 4.06
268 269 3.558033 TCATATGTGTCAATGCCATGCT 58.442 40.909 1.90 0.00 0.00 3.79
269 270 4.716794 TCATATGTGTCAATGCCATGCTA 58.283 39.130 1.90 0.00 0.00 3.49
270 271 4.758165 TCATATGTGTCAATGCCATGCTAG 59.242 41.667 1.90 0.00 0.00 3.42
271 272 2.495155 TGTGTCAATGCCATGCTAGT 57.505 45.000 0.00 0.00 0.00 2.57
272 273 2.086094 TGTGTCAATGCCATGCTAGTG 58.914 47.619 0.00 0.00 0.00 2.74
273 274 2.290197 TGTGTCAATGCCATGCTAGTGA 60.290 45.455 0.00 0.00 0.00 3.41
274 275 2.947652 GTGTCAATGCCATGCTAGTGAT 59.052 45.455 1.83 0.00 0.00 3.06
275 276 3.379372 GTGTCAATGCCATGCTAGTGATT 59.621 43.478 1.83 0.00 0.00 2.57
276 277 4.018490 TGTCAATGCCATGCTAGTGATTT 58.982 39.130 1.83 0.00 0.00 2.17
277 278 5.066375 GTGTCAATGCCATGCTAGTGATTTA 59.934 40.000 1.83 0.00 0.00 1.40
278 279 5.066375 TGTCAATGCCATGCTAGTGATTTAC 59.934 40.000 1.83 0.00 0.00 2.01
279 280 5.297776 GTCAATGCCATGCTAGTGATTTACT 59.702 40.000 1.83 0.00 43.56 2.24
280 281 5.528690 TCAATGCCATGCTAGTGATTTACTC 59.471 40.000 0.00 0.00 40.89 2.59
281 282 3.457234 TGCCATGCTAGTGATTTACTCG 58.543 45.455 0.00 0.00 40.89 4.18
282 283 3.118775 TGCCATGCTAGTGATTTACTCGT 60.119 43.478 0.00 0.00 40.89 4.18
283 284 3.246226 GCCATGCTAGTGATTTACTCGTG 59.754 47.826 0.00 0.00 40.89 4.35
284 285 3.804325 CCATGCTAGTGATTTACTCGTGG 59.196 47.826 0.00 0.00 40.89 4.94
285 286 4.441495 CCATGCTAGTGATTTACTCGTGGA 60.441 45.833 3.64 0.00 40.34 4.02
286 287 5.292765 CATGCTAGTGATTTACTCGTGGAT 58.707 41.667 0.00 0.00 40.89 3.41
287 288 5.339008 TGCTAGTGATTTACTCGTGGATT 57.661 39.130 0.00 0.00 40.89 3.01
288 289 6.459670 TGCTAGTGATTTACTCGTGGATTA 57.540 37.500 0.00 0.00 40.89 1.75
289 290 6.869695 TGCTAGTGATTTACTCGTGGATTAA 58.130 36.000 0.00 0.00 40.89 1.40
290 291 7.497595 TGCTAGTGATTTACTCGTGGATTAAT 58.502 34.615 0.00 0.00 40.89 1.40
291 292 7.985184 TGCTAGTGATTTACTCGTGGATTAATT 59.015 33.333 0.00 0.00 40.89 1.40
292 293 8.827677 GCTAGTGATTTACTCGTGGATTAATTT 58.172 33.333 0.00 0.00 40.89 1.82
300 301 9.806203 TTTACTCGTGGATTAATTTAATCGAGA 57.194 29.630 27.80 20.93 44.24 4.04
301 302 9.806203 TTACTCGTGGATTAATTTAATCGAGAA 57.194 29.630 27.80 19.77 44.24 2.87
302 303 8.712285 ACTCGTGGATTAATTTAATCGAGAAA 57.288 30.769 27.80 13.16 44.24 2.52
303 304 9.326413 ACTCGTGGATTAATTTAATCGAGAAAT 57.674 29.630 27.80 14.36 44.24 2.17
305 306 9.929722 TCGTGGATTAATTTAATCGAGAAATTG 57.070 29.630 22.08 10.11 44.24 2.32
306 307 8.682016 CGTGGATTAATTTAATCGAGAAATTGC 58.318 33.333 22.08 14.50 44.24 3.56
307 308 8.968242 GTGGATTAATTTAATCGAGAAATTGCC 58.032 33.333 22.08 19.77 44.24 4.52
308 309 8.912988 TGGATTAATTTAATCGAGAAATTGCCT 58.087 29.630 22.08 11.75 44.24 4.75
317 318 9.607988 TTAATCGAGAAATTGCCTATTTACTCA 57.392 29.630 0.00 0.00 36.59 3.41
318 319 8.506168 AATCGAGAAATTGCCTATTTACTCAA 57.494 30.769 0.00 0.00 36.59 3.02
319 320 7.303634 TCGAGAAATTGCCTATTTACTCAAC 57.696 36.000 0.00 0.00 36.59 3.18
320 321 6.876789 TCGAGAAATTGCCTATTTACTCAACA 59.123 34.615 0.00 0.00 36.59 3.33
321 322 7.389330 TCGAGAAATTGCCTATTTACTCAACAA 59.611 33.333 0.00 0.00 36.59 2.83
322 323 7.693951 CGAGAAATTGCCTATTTACTCAACAAG 59.306 37.037 0.00 0.00 36.59 3.16
386 388 2.656646 CTGGCTCACACGGCTACA 59.343 61.111 0.00 0.00 0.00 2.74
403 405 0.178995 ACACATGCATGGTGGACACA 60.179 50.000 29.41 0.00 40.54 3.72
411 413 1.065636 CATGGTGGACACATCTGCTCT 60.066 52.381 4.69 0.00 0.00 4.09
412 414 0.322648 TGGTGGACACATCTGCTCTG 59.677 55.000 4.69 0.00 0.00 3.35
413 415 1.023513 GGTGGACACATCTGCTCTGC 61.024 60.000 4.69 0.00 0.00 4.26
414 416 0.036577 GTGGACACATCTGCTCTGCT 60.037 55.000 0.00 0.00 0.00 4.24
415 417 0.248565 TGGACACATCTGCTCTGCTC 59.751 55.000 0.00 0.00 0.00 4.26
416 418 0.805322 GGACACATCTGCTCTGCTCG 60.805 60.000 0.00 0.00 0.00 5.03
417 419 1.419874 GACACATCTGCTCTGCTCGC 61.420 60.000 0.00 0.00 0.00 5.03
418 420 1.153608 CACATCTGCTCTGCTCGCT 60.154 57.895 0.00 0.00 0.00 4.93
419 421 1.141449 ACATCTGCTCTGCTCGCTC 59.859 57.895 0.00 0.00 0.00 5.03
420 422 1.141234 CATCTGCTCTGCTCGCTCA 59.859 57.895 0.00 0.00 0.00 4.26
765 809 8.814931 TCAATCTCTCATTTTCTTCTCTCTCTT 58.185 33.333 0.00 0.00 0.00 2.85
838 884 0.036732 TCGAGCTTGCAATCCAACCT 59.963 50.000 0.00 0.00 0.00 3.50
851 897 4.643387 AACCTCCACCGGCACTGC 62.643 66.667 0.00 0.00 0.00 4.40
931 977 1.606737 CCATTTCGAGCCTAGCTAGCC 60.607 57.143 15.74 4.07 39.88 3.93
946 992 4.483950 AGCTAGCCTTAGTCACCATATCA 58.516 43.478 12.13 0.00 0.00 2.15
1031 1086 1.548269 CGGTGCTCTCTTCTTCCTCTT 59.452 52.381 0.00 0.00 0.00 2.85
1175 1230 1.532505 GCTGGCGAATGCAATGTGTAG 60.533 52.381 0.00 0.00 45.35 2.74
1176 1231 1.739466 CTGGCGAATGCAATGTGTAGT 59.261 47.619 0.00 0.00 45.35 2.73
1178 1233 3.540617 TGGCGAATGCAATGTGTAGTAT 58.459 40.909 0.00 0.00 45.35 2.12
1179 1234 4.698575 TGGCGAATGCAATGTGTAGTATA 58.301 39.130 0.00 0.00 45.35 1.47
1180 1235 5.119694 TGGCGAATGCAATGTGTAGTATAA 58.880 37.500 0.00 0.00 45.35 0.98
1181 1236 5.007234 TGGCGAATGCAATGTGTAGTATAAC 59.993 40.000 0.00 0.00 45.35 1.89
1182 1237 5.236478 GGCGAATGCAATGTGTAGTATAACT 59.764 40.000 0.00 0.00 45.35 2.24
1184 1239 6.019075 GCGAATGCAATGTGTAGTATAACTCA 60.019 38.462 0.00 0.00 42.15 3.41
1241 1296 3.032033 GCGCTGGCTGTTTGTTGC 61.032 61.111 0.00 0.00 35.83 4.17
1581 1646 4.096984 CAGAAGGTGAGCACAAAGTTTTCT 59.903 41.667 2.75 0.08 0.00 2.52
1582 1647 4.706962 AGAAGGTGAGCACAAAGTTTTCTT 59.293 37.500 2.75 0.00 42.58 2.52
1583 1648 4.639135 AGGTGAGCACAAAGTTTTCTTC 57.361 40.909 2.75 0.00 39.48 2.87
1619 1684 4.541085 AAAAGTTACAGTGTAACCACGC 57.459 40.909 32.71 15.22 46.56 5.34
1620 1685 1.774639 AGTTACAGTGTAACCACGCG 58.225 50.000 32.71 3.53 46.56 6.01
1719 1811 0.808755 GTTGGTTCGGCCCATAAGTG 59.191 55.000 0.00 0.00 33.60 3.16
1841 2023 0.029834 ACTGTCACCGTGTCACGTAC 59.970 55.000 23.01 17.36 40.58 3.67
1860 2058 2.743938 ACTACTAATCCTGCATTCGCG 58.256 47.619 0.00 0.00 42.97 5.87
1877 2075 3.257561 GCTGACGCGTCGCATGAT 61.258 61.111 34.37 6.27 32.36 2.45
1878 2076 2.617225 CTGACGCGTCGCATGATG 59.383 61.111 31.88 13.00 0.00 3.07
1879 2077 1.873572 CTGACGCGTCGCATGATGA 60.874 57.895 31.88 12.73 32.56 2.92
2202 2401 2.359967 GGCGCCCAGTTCTAGTCCT 61.360 63.158 18.11 0.00 0.00 3.85
2204 2403 1.817209 CGCCCAGTTCTAGTCCTCC 59.183 63.158 0.00 0.00 0.00 4.30
2207 2406 1.342574 GCCCAGTTCTAGTCCTCCTCT 60.343 57.143 0.00 0.00 0.00 3.69
2213 2421 4.401202 CAGTTCTAGTCCTCCTCTTCTTCC 59.599 50.000 0.00 0.00 0.00 3.46
2235 2443 1.679680 CACAGGCATAAGCATTGGAGG 59.320 52.381 0.00 0.00 44.61 4.30
2269 2477 5.657474 ACGGAGCGTATTCTATTCAAGAAA 58.343 37.500 0.00 0.00 39.14 2.52
2271 2479 6.761714 ACGGAGCGTATTCTATTCAAGAAATT 59.238 34.615 0.00 0.00 39.14 1.82
2272 2480 7.924412 ACGGAGCGTATTCTATTCAAGAAATTA 59.076 33.333 0.00 0.00 39.14 1.40
2403 2616 3.839293 AGACGTTTTCCTTCTCTCATCG 58.161 45.455 0.00 0.00 0.00 3.84
2412 2625 3.944650 TCCTTCTCTCATCGAAGTCTCAG 59.055 47.826 0.00 0.00 36.91 3.35
2413 2626 3.944650 CCTTCTCTCATCGAAGTCTCAGA 59.055 47.826 0.00 0.00 36.91 3.27
2476 2695 0.100861 GTAGTAGCGTGGCACTCCTC 59.899 60.000 16.72 3.90 0.00 3.71
2477 2696 0.034380 TAGTAGCGTGGCACTCCTCT 60.034 55.000 16.72 11.09 0.00 3.69
2478 2697 1.139947 GTAGCGTGGCACTCCTCTC 59.860 63.158 16.72 5.53 0.00 3.20
2479 2698 2.052690 TAGCGTGGCACTCCTCTCC 61.053 63.158 16.72 0.00 0.00 3.71
2480 2699 2.500815 TAGCGTGGCACTCCTCTCCT 62.501 60.000 16.72 3.16 0.00 3.69
2522 2741 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2523 2742 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2524 2743 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2525 2744 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2526 2745 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2527 2746 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2528 2747 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2529 2748 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2530 2749 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2531 2750 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2532 2751 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2533 2752 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2534 2753 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2535 2754 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2536 2755 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2537 2756 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2538 2757 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2539 2758 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2540 2759 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2541 2760 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2542 2761 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2543 2762 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2544 2763 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2545 2764 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2546 2765 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2547 2766 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2548 2767 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2549 2768 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2550 2769 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2601 2826 1.003233 AGTAGCAGTACCTTTGGTGGC 59.997 52.381 0.00 1.26 36.19 5.01
2714 2947 4.789173 TAGCTAGCCGGCCACCCA 62.789 66.667 26.15 2.56 0.00 4.51
2766 2999 1.589716 GGCTGTTTGCTGGGCTGTAG 61.590 60.000 0.00 0.00 42.39 2.74
2767 3000 0.890996 GCTGTTTGCTGGGCTGTAGT 60.891 55.000 0.00 0.00 38.95 2.73
2768 3001 1.610624 GCTGTTTGCTGGGCTGTAGTA 60.611 52.381 0.00 0.00 38.95 1.82
2889 3127 3.490419 GCCGTTTCGTGTAGATGATAGGT 60.490 47.826 0.00 0.00 0.00 3.08
2953 3202 1.961277 CCTCCACGCGCTCAAGTTT 60.961 57.895 5.73 0.00 0.00 2.66
2988 3237 1.089920 CTCCTTCTGAAATGGTGCCG 58.910 55.000 0.00 0.00 0.00 5.69
2993 3242 1.603455 CTGAAATGGTGCCGTGGGT 60.603 57.895 0.00 0.00 0.00 4.51
3005 3254 1.361668 CCGTGGGTGCTTTCGAGATG 61.362 60.000 0.00 0.00 0.00 2.90
3007 3256 1.741401 TGGGTGCTTTCGAGATGCG 60.741 57.895 0.00 0.00 42.69 4.73
3026 3275 2.510664 CTCCTAGAGCCCTGGTGTC 58.489 63.158 0.00 0.00 0.00 3.67
3109 3358 1.086634 GCTCGTCCTGAAGATGGTGC 61.087 60.000 0.00 0.00 31.83 5.01
3113 3362 0.175760 GTCCTGAAGATGGTGCGCTA 59.824 55.000 9.73 0.00 0.00 4.26
3169 3434 0.955178 AGAGCGTCCCATCGTATCAG 59.045 55.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.600957 GACATGGTGATGATGAAGGCG 59.399 52.381 0.00 0.00 33.36 5.52
3 4 1.952296 GGACATGGTGATGATGAAGGC 59.048 52.381 0.00 0.00 33.36 4.35
4 5 2.947652 GTGGACATGGTGATGATGAAGG 59.052 50.000 0.00 0.00 33.36 3.46
5 6 2.947652 GGTGGACATGGTGATGATGAAG 59.052 50.000 0.00 0.00 33.36 3.02
6 7 2.680513 CGGTGGACATGGTGATGATGAA 60.681 50.000 0.00 0.00 33.36 2.57
7 8 1.134431 CGGTGGACATGGTGATGATGA 60.134 52.381 0.00 0.00 33.36 2.92
8 9 1.134431 TCGGTGGACATGGTGATGATG 60.134 52.381 0.00 0.00 33.36 3.07
9 10 1.134401 GTCGGTGGACATGGTGATGAT 60.134 52.381 0.00 0.00 42.91 2.45
10 11 0.249120 GTCGGTGGACATGGTGATGA 59.751 55.000 0.00 0.00 42.91 2.92
11 12 1.083806 CGTCGGTGGACATGGTGATG 61.084 60.000 0.00 0.00 43.61 3.07
12 13 1.218047 CGTCGGTGGACATGGTGAT 59.782 57.895 0.00 0.00 43.61 3.06
13 14 2.654289 CGTCGGTGGACATGGTGA 59.346 61.111 0.00 0.00 43.61 4.02
14 15 3.118454 GCGTCGGTGGACATGGTG 61.118 66.667 0.00 0.00 43.61 4.17
15 16 4.388499 GGCGTCGGTGGACATGGT 62.388 66.667 0.00 0.00 43.61 3.55
17 18 3.925362 TTCGGCGTCGGTGGACATG 62.925 63.158 10.62 0.00 43.61 3.21
18 19 3.687102 TTCGGCGTCGGTGGACAT 61.687 61.111 10.62 0.00 43.61 3.06
19 20 4.651008 GTTCGGCGTCGGTGGACA 62.651 66.667 10.62 0.00 43.61 4.02
40 41 3.788766 CAGTTTTCTCGGCGGCGG 61.789 66.667 31.73 21.26 0.00 6.13
41 42 2.227968 CTTCAGTTTTCTCGGCGGCG 62.228 60.000 27.15 27.15 0.00 6.46
42 43 1.497722 CTTCAGTTTTCTCGGCGGC 59.502 57.895 7.21 0.00 0.00 6.53
43 44 0.951040 AGCTTCAGTTTTCTCGGCGG 60.951 55.000 7.21 0.00 0.00 6.13
44 45 0.164647 CAGCTTCAGTTTTCTCGGCG 59.835 55.000 0.00 0.00 0.00 6.46
45 46 1.195674 GTCAGCTTCAGTTTTCTCGGC 59.804 52.381 0.00 0.00 0.00 5.54
46 47 2.483876 TGTCAGCTTCAGTTTTCTCGG 58.516 47.619 0.00 0.00 0.00 4.63
47 48 3.804325 TCTTGTCAGCTTCAGTTTTCTCG 59.196 43.478 0.00 0.00 0.00 4.04
48 49 5.277731 CCTTCTTGTCAGCTTCAGTTTTCTC 60.278 44.000 0.00 0.00 0.00 2.87
49 50 4.578105 CCTTCTTGTCAGCTTCAGTTTTCT 59.422 41.667 0.00 0.00 0.00 2.52
50 51 4.791088 GCCTTCTTGTCAGCTTCAGTTTTC 60.791 45.833 0.00 0.00 0.00 2.29
51 52 3.067320 GCCTTCTTGTCAGCTTCAGTTTT 59.933 43.478 0.00 0.00 0.00 2.43
52 53 2.620585 GCCTTCTTGTCAGCTTCAGTTT 59.379 45.455 0.00 0.00 0.00 2.66
53 54 2.225467 GCCTTCTTGTCAGCTTCAGTT 58.775 47.619 0.00 0.00 0.00 3.16
54 55 1.544314 GGCCTTCTTGTCAGCTTCAGT 60.544 52.381 0.00 0.00 0.00 3.41
55 56 1.163554 GGCCTTCTTGTCAGCTTCAG 58.836 55.000 0.00 0.00 0.00 3.02
56 57 0.603707 CGGCCTTCTTGTCAGCTTCA 60.604 55.000 0.00 0.00 0.00 3.02
57 58 1.916697 GCGGCCTTCTTGTCAGCTTC 61.917 60.000 0.00 0.00 0.00 3.86
58 59 1.968540 GCGGCCTTCTTGTCAGCTT 60.969 57.895 0.00 0.00 0.00 3.74
59 60 2.359230 GCGGCCTTCTTGTCAGCT 60.359 61.111 0.00 0.00 0.00 4.24
60 61 3.435186 GGCGGCCTTCTTGTCAGC 61.435 66.667 12.87 0.00 0.00 4.26
61 62 3.121030 CGGCGGCCTTCTTGTCAG 61.121 66.667 18.34 0.00 0.00 3.51
62 63 3.589654 CTCGGCGGCCTTCTTGTCA 62.590 63.158 18.34 0.00 0.00 3.58
63 64 2.815647 CTCGGCGGCCTTCTTGTC 60.816 66.667 18.34 0.00 0.00 3.18
64 65 4.394712 CCTCGGCGGCCTTCTTGT 62.395 66.667 18.34 0.00 0.00 3.16
65 66 4.082523 TCCTCGGCGGCCTTCTTG 62.083 66.667 18.34 0.39 0.00 3.02
66 67 4.083862 GTCCTCGGCGGCCTTCTT 62.084 66.667 18.34 0.00 0.00 2.52
85 86 4.047059 CTTTGGTGGCAGCAGCGG 62.047 66.667 19.65 9.91 43.41 5.52
86 87 4.712425 GCTTTGGTGGCAGCAGCG 62.712 66.667 19.65 14.94 43.41 5.18
87 88 4.368543 GGCTTTGGTGGCAGCAGC 62.369 66.667 19.65 19.35 37.81 5.25
88 89 4.047059 CGGCTTTGGTGGCAGCAG 62.047 66.667 19.65 10.41 37.81 4.24
109 110 1.147824 CCAGTAGGCCATGCAGAGG 59.852 63.158 5.01 3.66 0.00 3.69
110 111 0.106335 CTCCAGTAGGCCATGCAGAG 59.894 60.000 5.01 1.06 33.74 3.35
111 112 1.340399 CCTCCAGTAGGCCATGCAGA 61.340 60.000 5.01 0.00 38.97 4.26
112 113 1.147824 CCTCCAGTAGGCCATGCAG 59.852 63.158 5.01 0.00 38.97 4.41
113 114 2.377810 CCCTCCAGTAGGCCATGCA 61.378 63.158 5.01 0.00 45.03 3.96
114 115 1.054406 TACCCTCCAGTAGGCCATGC 61.054 60.000 5.01 0.00 45.03 4.06
115 116 1.734655 ATACCCTCCAGTAGGCCATG 58.265 55.000 5.01 0.00 45.03 3.66
116 117 3.116317 AGTTATACCCTCCAGTAGGCCAT 60.116 47.826 5.01 0.00 45.03 4.40
117 118 2.249214 AGTTATACCCTCCAGTAGGCCA 59.751 50.000 5.01 0.00 45.03 5.36
118 119 2.898612 GAGTTATACCCTCCAGTAGGCC 59.101 54.545 0.00 0.00 45.03 5.19
119 120 2.557490 CGAGTTATACCCTCCAGTAGGC 59.443 54.545 0.00 0.00 45.03 3.93
120 121 3.830121 ACGAGTTATACCCTCCAGTAGG 58.170 50.000 0.00 0.00 46.09 3.18
121 122 5.848833 AAACGAGTTATACCCTCCAGTAG 57.151 43.478 0.00 0.00 0.00 2.57
122 123 6.491403 GGATAAACGAGTTATACCCTCCAGTA 59.509 42.308 0.00 0.00 32.26 2.74
123 124 5.303845 GGATAAACGAGTTATACCCTCCAGT 59.696 44.000 0.00 0.00 32.26 4.00
124 125 5.279356 GGGATAAACGAGTTATACCCTCCAG 60.279 48.000 11.63 0.00 44.83 3.86
125 126 4.590222 GGGATAAACGAGTTATACCCTCCA 59.410 45.833 11.63 0.00 44.83 3.86
126 127 5.144692 GGGATAAACGAGTTATACCCTCC 57.855 47.826 11.63 3.81 44.83 4.30
130 131 4.233005 GAGCGGGATAAACGAGTTATACC 58.767 47.826 12.34 12.34 46.48 2.73
131 132 4.022503 AGGAGCGGGATAAACGAGTTATAC 60.023 45.833 0.00 0.00 32.26 1.47
132 133 4.147321 AGGAGCGGGATAAACGAGTTATA 58.853 43.478 0.00 0.00 32.26 0.98
133 134 2.963782 AGGAGCGGGATAAACGAGTTAT 59.036 45.455 0.00 0.00 34.97 1.89
134 135 2.381911 AGGAGCGGGATAAACGAGTTA 58.618 47.619 0.00 0.00 0.00 2.24
135 136 1.192428 AGGAGCGGGATAAACGAGTT 58.808 50.000 0.00 0.00 0.00 3.01
136 137 1.680207 GTAGGAGCGGGATAAACGAGT 59.320 52.381 0.00 0.00 0.00 4.18
137 138 1.955080 AGTAGGAGCGGGATAAACGAG 59.045 52.381 0.00 0.00 0.00 4.18
138 139 1.679680 CAGTAGGAGCGGGATAAACGA 59.320 52.381 0.00 0.00 0.00 3.85
139 140 1.407979 ACAGTAGGAGCGGGATAAACG 59.592 52.381 0.00 0.00 0.00 3.60
140 141 3.538634 AACAGTAGGAGCGGGATAAAC 57.461 47.619 0.00 0.00 0.00 2.01
141 142 4.224370 AGAAAACAGTAGGAGCGGGATAAA 59.776 41.667 0.00 0.00 0.00 1.40
142 143 3.773119 AGAAAACAGTAGGAGCGGGATAA 59.227 43.478 0.00 0.00 0.00 1.75
143 144 3.132289 CAGAAAACAGTAGGAGCGGGATA 59.868 47.826 0.00 0.00 0.00 2.59
144 145 2.093447 CAGAAAACAGTAGGAGCGGGAT 60.093 50.000 0.00 0.00 0.00 3.85
145 146 1.275291 CAGAAAACAGTAGGAGCGGGA 59.725 52.381 0.00 0.00 0.00 5.14
146 147 1.002087 ACAGAAAACAGTAGGAGCGGG 59.998 52.381 0.00 0.00 0.00 6.13
147 148 2.457366 ACAGAAAACAGTAGGAGCGG 57.543 50.000 0.00 0.00 0.00 5.52
148 149 4.813296 AAAACAGAAAACAGTAGGAGCG 57.187 40.909 0.00 0.00 0.00 5.03
149 150 5.334957 GGCTAAAACAGAAAACAGTAGGAGC 60.335 44.000 0.00 0.00 0.00 4.70
150 151 5.763204 TGGCTAAAACAGAAAACAGTAGGAG 59.237 40.000 0.00 0.00 0.00 3.69
151 152 5.686753 TGGCTAAAACAGAAAACAGTAGGA 58.313 37.500 0.00 0.00 0.00 2.94
152 153 6.381801 CATGGCTAAAACAGAAAACAGTAGG 58.618 40.000 0.00 0.00 0.00 3.18
153 154 5.858581 GCATGGCTAAAACAGAAAACAGTAG 59.141 40.000 0.00 0.00 0.00 2.57
154 155 5.534654 AGCATGGCTAAAACAGAAAACAGTA 59.465 36.000 0.00 0.00 36.99 2.74
155 156 4.342092 AGCATGGCTAAAACAGAAAACAGT 59.658 37.500 0.00 0.00 36.99 3.55
156 157 4.874970 AGCATGGCTAAAACAGAAAACAG 58.125 39.130 0.00 0.00 36.99 3.16
157 158 4.935352 AGCATGGCTAAAACAGAAAACA 57.065 36.364 0.00 0.00 36.99 2.83
158 159 4.859245 GCTAGCATGGCTAAAACAGAAAAC 59.141 41.667 10.63 0.00 40.82 2.43
159 160 4.379394 CGCTAGCATGGCTAAAACAGAAAA 60.379 41.667 16.45 0.00 42.26 2.29
160 161 3.126858 CGCTAGCATGGCTAAAACAGAAA 59.873 43.478 16.45 0.00 42.26 2.52
161 162 2.677836 CGCTAGCATGGCTAAAACAGAA 59.322 45.455 16.45 0.00 42.26 3.02
162 163 2.279741 CGCTAGCATGGCTAAAACAGA 58.720 47.619 16.45 0.00 42.26 3.41
163 164 2.009774 ACGCTAGCATGGCTAAAACAG 58.990 47.619 16.45 0.00 42.26 3.16
164 165 2.107950 ACGCTAGCATGGCTAAAACA 57.892 45.000 16.45 0.00 42.26 2.83
165 166 4.813296 ATAACGCTAGCATGGCTAAAAC 57.187 40.909 16.45 0.00 42.26 2.43
166 167 4.446385 CGTATAACGCTAGCATGGCTAAAA 59.554 41.667 16.45 0.00 42.26 1.52
167 168 3.985279 CGTATAACGCTAGCATGGCTAAA 59.015 43.478 16.45 0.00 42.26 1.85
168 169 3.571571 CGTATAACGCTAGCATGGCTAA 58.428 45.455 16.45 0.00 42.26 3.09
169 170 3.211803 CGTATAACGCTAGCATGGCTA 57.788 47.619 16.45 0.00 42.26 3.93
170 171 2.065993 CGTATAACGCTAGCATGGCT 57.934 50.000 16.45 0.00 42.26 4.75
175 176 7.781484 CAGAAAGATCTACGTATAACGCTAGCA 60.781 40.741 16.45 0.00 38.47 3.49
176 177 6.520447 CAGAAAGATCTACGTATAACGCTAGC 59.480 42.308 4.06 4.06 38.47 3.42
177 178 6.520447 GCAGAAAGATCTACGTATAACGCTAG 59.480 42.308 0.00 1.90 38.47 3.42
178 179 6.017687 TGCAGAAAGATCTACGTATAACGCTA 60.018 38.462 0.00 0.00 38.47 4.26
179 180 5.213675 GCAGAAAGATCTACGTATAACGCT 58.786 41.667 0.00 0.00 38.47 5.07
180 181 4.974275 TGCAGAAAGATCTACGTATAACGC 59.026 41.667 0.00 0.00 38.47 4.84
181 182 7.624706 ATTGCAGAAAGATCTACGTATAACG 57.375 36.000 0.00 0.00 39.99 3.18
183 184 9.193133 GCTAATTGCAGAAAGATCTACGTATAA 57.807 33.333 0.00 0.00 42.31 0.98
184 185 7.537649 CGCTAATTGCAGAAAGATCTACGTATA 59.462 37.037 0.00 0.00 43.06 1.47
185 186 6.363626 CGCTAATTGCAGAAAGATCTACGTAT 59.636 38.462 0.00 0.00 43.06 3.06
186 187 5.685954 CGCTAATTGCAGAAAGATCTACGTA 59.314 40.000 0.00 0.00 43.06 3.57
187 188 4.504461 CGCTAATTGCAGAAAGATCTACGT 59.496 41.667 0.00 0.00 43.06 3.57
188 189 4.504461 ACGCTAATTGCAGAAAGATCTACG 59.496 41.667 0.00 0.00 43.06 3.51
189 190 5.975410 ACGCTAATTGCAGAAAGATCTAC 57.025 39.130 0.00 0.00 43.06 2.59
190 191 6.806751 ACTACGCTAATTGCAGAAAGATCTA 58.193 36.000 0.00 0.00 43.06 1.98
191 192 5.665459 ACTACGCTAATTGCAGAAAGATCT 58.335 37.500 0.00 0.00 43.06 2.75
192 193 5.975410 ACTACGCTAATTGCAGAAAGATC 57.025 39.130 0.00 0.00 43.06 2.75
193 194 6.986817 ACATACTACGCTAATTGCAGAAAGAT 59.013 34.615 0.00 0.00 43.06 2.40
194 195 6.255670 CACATACTACGCTAATTGCAGAAAGA 59.744 38.462 0.00 0.00 43.06 2.52
195 196 6.414079 CACATACTACGCTAATTGCAGAAAG 58.586 40.000 0.00 0.00 43.06 2.62
196 197 5.220586 GCACATACTACGCTAATTGCAGAAA 60.221 40.000 0.00 0.00 43.06 2.52
197 198 4.270084 GCACATACTACGCTAATTGCAGAA 59.730 41.667 0.00 0.00 43.06 3.02
198 199 3.802139 GCACATACTACGCTAATTGCAGA 59.198 43.478 0.00 0.00 43.06 4.26
199 200 3.804325 AGCACATACTACGCTAATTGCAG 59.196 43.478 0.00 0.00 43.06 4.41
200 201 3.792401 AGCACATACTACGCTAATTGCA 58.208 40.909 0.00 0.00 43.06 4.08
201 202 4.982916 AGTAGCACATACTACGCTAATTGC 59.017 41.667 0.00 0.00 45.87 3.56
202 203 7.222031 TCAAAGTAGCACATACTACGCTAATTG 59.778 37.037 4.37 7.34 43.43 2.32
203 204 7.222224 GTCAAAGTAGCACATACTACGCTAATT 59.778 37.037 0.00 0.00 45.40 1.40
204 205 6.696148 GTCAAAGTAGCACATACTACGCTAAT 59.304 38.462 0.00 0.00 44.26 1.73
205 206 6.032094 GTCAAAGTAGCACATACTACGCTAA 58.968 40.000 0.00 0.00 44.26 3.09
206 207 5.356190 AGTCAAAGTAGCACATACTACGCTA 59.644 40.000 0.00 0.00 44.26 4.26
207 208 4.158025 AGTCAAAGTAGCACATACTACGCT 59.842 41.667 0.00 0.00 44.26 5.07
208 209 4.265556 CAGTCAAAGTAGCACATACTACGC 59.734 45.833 0.00 0.00 44.26 4.42
209 210 5.637809 TCAGTCAAAGTAGCACATACTACG 58.362 41.667 0.00 0.00 44.26 3.51
210 211 9.751542 ATATTCAGTCAAAGTAGCACATACTAC 57.248 33.333 0.00 0.00 44.26 2.73
211 212 9.967346 GATATTCAGTCAAAGTAGCACATACTA 57.033 33.333 0.00 0.00 44.26 1.82
213 214 8.648557 TGATATTCAGTCAAAGTAGCACATAC 57.351 34.615 0.00 0.00 34.30 2.39
214 215 8.877808 CTGATATTCAGTCAAAGTAGCACATA 57.122 34.615 0.00 0.00 39.58 2.29
215 216 7.783090 CTGATATTCAGTCAAAGTAGCACAT 57.217 36.000 0.00 0.00 39.58 3.21
229 230 8.753175 CACATATGATCGCATACTGATATTCAG 58.247 37.037 10.38 3.03 41.70 3.02
230 231 8.253113 ACACATATGATCGCATACTGATATTCA 58.747 33.333 10.38 0.00 39.65 2.57
231 232 8.640091 ACACATATGATCGCATACTGATATTC 57.360 34.615 10.38 0.00 39.65 1.75
232 233 8.253113 TGACACATATGATCGCATACTGATATT 58.747 33.333 10.38 0.00 39.65 1.28
233 234 7.775120 TGACACATATGATCGCATACTGATAT 58.225 34.615 10.38 0.00 39.65 1.63
234 235 7.156876 TGACACATATGATCGCATACTGATA 57.843 36.000 10.38 0.00 39.65 2.15
235 236 6.029346 TGACACATATGATCGCATACTGAT 57.971 37.500 10.38 0.00 39.65 2.90
236 237 5.452078 TGACACATATGATCGCATACTGA 57.548 39.130 10.38 0.00 39.65 3.41
237 238 6.531439 CATTGACACATATGATCGCATACTG 58.469 40.000 10.38 0.00 39.65 2.74
238 239 5.121298 GCATTGACACATATGATCGCATACT 59.879 40.000 10.38 0.00 39.65 2.12
239 240 5.319139 GCATTGACACATATGATCGCATAC 58.681 41.667 10.38 0.00 39.65 2.39
240 241 4.392754 GGCATTGACACATATGATCGCATA 59.607 41.667 10.38 0.00 41.00 3.14
241 242 3.189910 GGCATTGACACATATGATCGCAT 59.810 43.478 10.38 0.91 38.54 4.73
242 243 2.549329 GGCATTGACACATATGATCGCA 59.451 45.455 10.38 0.00 0.00 5.10
243 244 2.549329 TGGCATTGACACATATGATCGC 59.451 45.455 10.38 5.79 0.00 4.58
244 245 4.719040 CATGGCATTGACACATATGATCG 58.281 43.478 10.38 0.00 0.00 3.69
245 246 4.217767 AGCATGGCATTGACACATATGATC 59.782 41.667 10.38 7.22 0.00 2.92
246 247 4.149598 AGCATGGCATTGACACATATGAT 58.850 39.130 10.38 0.00 0.00 2.45
247 248 3.558033 AGCATGGCATTGACACATATGA 58.442 40.909 10.38 0.00 0.00 2.15
248 249 4.517832 ACTAGCATGGCATTGACACATATG 59.482 41.667 0.00 0.00 0.00 1.78
249 250 4.517832 CACTAGCATGGCATTGACACATAT 59.482 41.667 0.00 0.00 0.00 1.78
250 251 3.878699 CACTAGCATGGCATTGACACATA 59.121 43.478 0.00 0.00 0.00 2.29
251 252 2.686405 CACTAGCATGGCATTGACACAT 59.314 45.455 0.00 0.00 0.00 3.21
252 253 2.086094 CACTAGCATGGCATTGACACA 58.914 47.619 0.00 0.00 0.00 3.72
253 254 2.358957 TCACTAGCATGGCATTGACAC 58.641 47.619 0.00 0.00 0.00 3.67
254 255 2.785540 TCACTAGCATGGCATTGACA 57.214 45.000 0.00 0.00 0.00 3.58
255 256 4.644103 AAATCACTAGCATGGCATTGAC 57.356 40.909 0.00 0.00 0.00 3.18
256 257 5.439721 AGTAAATCACTAGCATGGCATTGA 58.560 37.500 0.00 0.00 34.98 2.57
257 258 5.559608 CGAGTAAATCACTAGCATGGCATTG 60.560 44.000 0.00 0.00 37.72 2.82
258 259 4.512944 CGAGTAAATCACTAGCATGGCATT 59.487 41.667 0.00 0.00 37.72 3.56
259 260 4.060900 CGAGTAAATCACTAGCATGGCAT 58.939 43.478 0.00 0.00 37.72 4.40
260 261 3.118775 ACGAGTAAATCACTAGCATGGCA 60.119 43.478 0.00 0.00 37.72 4.92
261 262 3.246226 CACGAGTAAATCACTAGCATGGC 59.754 47.826 0.00 0.00 37.72 4.40
262 263 3.804325 CCACGAGTAAATCACTAGCATGG 59.196 47.826 0.00 0.00 37.72 3.66
263 264 4.682787 TCCACGAGTAAATCACTAGCATG 58.317 43.478 0.00 0.00 37.72 4.06
264 265 5.537300 ATCCACGAGTAAATCACTAGCAT 57.463 39.130 0.00 0.00 37.72 3.79
265 266 5.339008 AATCCACGAGTAAATCACTAGCA 57.661 39.130 0.00 0.00 37.72 3.49
266 267 7.948278 ATTAATCCACGAGTAAATCACTAGC 57.052 36.000 0.00 0.00 37.72 3.42
274 275 9.806203 TCTCGATTAAATTAATCCACGAGTAAA 57.194 29.630 22.80 10.58 41.10 2.01
275 276 9.806203 TTCTCGATTAAATTAATCCACGAGTAA 57.194 29.630 22.80 16.72 41.10 2.24
276 277 9.806203 TTTCTCGATTAAATTAATCCACGAGTA 57.194 29.630 22.80 16.29 41.10 2.59
277 278 8.712285 TTTCTCGATTAAATTAATCCACGAGT 57.288 30.769 22.80 0.00 41.10 4.18
279 280 9.929722 CAATTTCTCGATTAAATTAATCCACGA 57.070 29.630 17.23 12.07 41.10 4.35
280 281 8.682016 GCAATTTCTCGATTAAATTAATCCACG 58.318 33.333 17.23 8.92 41.10 4.94
281 282 8.968242 GGCAATTTCTCGATTAAATTAATCCAC 58.032 33.333 17.23 0.00 41.10 4.02
282 283 8.912988 AGGCAATTTCTCGATTAAATTAATCCA 58.087 29.630 17.23 6.53 41.10 3.41
291 292 9.607988 TGAGTAAATAGGCAATTTCTCGATTAA 57.392 29.630 0.00 0.00 38.71 1.40
292 293 9.607988 TTGAGTAAATAGGCAATTTCTCGATTA 57.392 29.630 0.00 0.00 38.71 1.75
293 294 8.398665 GTTGAGTAAATAGGCAATTTCTCGATT 58.601 33.333 0.00 0.00 38.71 3.34
294 295 7.552687 TGTTGAGTAAATAGGCAATTTCTCGAT 59.447 33.333 0.00 0.00 38.71 3.59
295 296 6.876789 TGTTGAGTAAATAGGCAATTTCTCGA 59.123 34.615 0.00 5.03 38.71 4.04
296 297 7.072177 TGTTGAGTAAATAGGCAATTTCTCG 57.928 36.000 0.00 0.00 38.71 4.04
297 298 8.730680 TCTTGTTGAGTAAATAGGCAATTTCTC 58.269 33.333 0.00 7.49 38.71 2.87
298 299 8.635765 TCTTGTTGAGTAAATAGGCAATTTCT 57.364 30.769 0.00 0.00 38.71 2.52
299 300 9.129209 GTTCTTGTTGAGTAAATAGGCAATTTC 57.871 33.333 0.00 0.00 38.71 2.17
300 301 8.637986 TGTTCTTGTTGAGTAAATAGGCAATTT 58.362 29.630 2.34 2.34 40.87 1.82
301 302 8.177119 TGTTCTTGTTGAGTAAATAGGCAATT 57.823 30.769 0.00 0.00 0.00 2.32
302 303 7.759489 TGTTCTTGTTGAGTAAATAGGCAAT 57.241 32.000 0.00 0.00 0.00 3.56
303 304 7.446931 TCATGTTCTTGTTGAGTAAATAGGCAA 59.553 33.333 0.00 0.00 0.00 4.52
304 305 6.939730 TCATGTTCTTGTTGAGTAAATAGGCA 59.060 34.615 0.00 0.00 0.00 4.75
305 306 7.244192 GTCATGTTCTTGTTGAGTAAATAGGC 58.756 38.462 0.00 0.00 0.00 3.93
306 307 7.413000 CGGTCATGTTCTTGTTGAGTAAATAGG 60.413 40.741 0.00 0.00 0.00 2.57
307 308 7.413000 CCGGTCATGTTCTTGTTGAGTAAATAG 60.413 40.741 0.00 0.00 0.00 1.73
308 309 6.370442 CCGGTCATGTTCTTGTTGAGTAAATA 59.630 38.462 0.00 0.00 0.00 1.40
309 310 5.181245 CCGGTCATGTTCTTGTTGAGTAAAT 59.819 40.000 0.00 0.00 0.00 1.40
310 311 4.513692 CCGGTCATGTTCTTGTTGAGTAAA 59.486 41.667 0.00 0.00 0.00 2.01
311 312 4.062293 CCGGTCATGTTCTTGTTGAGTAA 58.938 43.478 0.00 0.00 0.00 2.24
312 313 3.322541 TCCGGTCATGTTCTTGTTGAGTA 59.677 43.478 0.00 0.00 0.00 2.59
313 314 2.104111 TCCGGTCATGTTCTTGTTGAGT 59.896 45.455 0.00 0.00 0.00 3.41
314 315 2.766313 TCCGGTCATGTTCTTGTTGAG 58.234 47.619 0.00 0.00 0.00 3.02
315 316 2.920724 TCCGGTCATGTTCTTGTTGA 57.079 45.000 0.00 0.00 0.00 3.18
316 317 3.119849 GGAATCCGGTCATGTTCTTGTTG 60.120 47.826 0.00 0.00 0.00 3.33
317 318 3.081804 GGAATCCGGTCATGTTCTTGTT 58.918 45.455 0.00 0.00 0.00 2.83
318 319 2.618045 GGGAATCCGGTCATGTTCTTGT 60.618 50.000 0.00 0.00 0.00 3.16
319 320 2.017049 GGGAATCCGGTCATGTTCTTG 58.983 52.381 0.00 0.00 0.00 3.02
320 321 1.064685 GGGGAATCCGGTCATGTTCTT 60.065 52.381 0.00 0.00 0.00 2.52
321 322 0.546598 GGGGAATCCGGTCATGTTCT 59.453 55.000 0.00 0.00 0.00 3.01
322 323 0.465642 GGGGGAATCCGGTCATGTTC 60.466 60.000 0.00 0.00 36.01 3.18
372 374 1.970917 GCATGTGTAGCCGTGTGAGC 61.971 60.000 0.00 0.00 0.00 4.26
374 376 0.036483 ATGCATGTGTAGCCGTGTGA 60.036 50.000 0.00 0.00 0.00 3.58
386 388 1.005097 AGATGTGTCCACCATGCATGT 59.995 47.619 24.58 10.59 0.00 3.21
403 405 1.141449 GTGAGCGAGCAGAGCAGAT 59.859 57.895 0.00 0.00 37.01 2.90
417 419 3.136123 CATGGGCGGCAAGGTGAG 61.136 66.667 12.47 0.00 0.00 3.51
418 420 3.626996 CTCATGGGCGGCAAGGTGA 62.627 63.158 12.47 7.91 0.00 4.02
419 421 3.136123 CTCATGGGCGGCAAGGTG 61.136 66.667 12.47 0.00 0.00 4.00
420 422 3.210012 AACTCATGGGCGGCAAGGT 62.210 57.895 12.47 0.00 0.00 3.50
569 585 1.998438 TGTGTGGTGGACTGGTGGT 60.998 57.895 0.00 0.00 0.00 4.16
931 977 5.515797 TTCGAGGTGATATGGTGACTAAG 57.484 43.478 0.00 0.00 0.00 2.18
969 1015 4.644685 AGAGAGAGAGCTTCCTTGTATCAC 59.355 45.833 0.00 0.00 0.00 3.06
1031 1086 2.055042 GCGAGGAGGCAGAAGGAGA 61.055 63.158 0.00 0.00 0.00 3.71
1122 1177 1.301623 CTTACCCATGGTGCCGGAA 59.698 57.895 5.05 0.00 36.19 4.30
1175 1230 7.149112 CGTTCAAGTAGCGATGATGAGTTATAC 60.149 40.741 0.00 0.00 32.92 1.47
1176 1231 6.856426 CGTTCAAGTAGCGATGATGAGTTATA 59.144 38.462 0.00 0.00 32.92 0.98
1178 1233 5.034797 CGTTCAAGTAGCGATGATGAGTTA 58.965 41.667 0.00 0.00 32.92 2.24
1179 1234 3.859961 CGTTCAAGTAGCGATGATGAGTT 59.140 43.478 0.00 0.00 32.92 3.01
1180 1235 3.439293 CGTTCAAGTAGCGATGATGAGT 58.561 45.455 0.00 0.00 32.92 3.41
1181 1236 2.217393 GCGTTCAAGTAGCGATGATGAG 59.783 50.000 0.00 0.00 32.92 2.90
1182 1237 2.193447 GCGTTCAAGTAGCGATGATGA 58.807 47.619 0.00 0.00 32.92 2.92
1184 1239 1.137086 AGGCGTTCAAGTAGCGATGAT 59.863 47.619 0.00 0.00 32.92 2.45
1624 1689 4.477975 GTCGGTCGGTCGAGCCAG 62.478 72.222 15.42 4.45 40.01 4.85
1629 1694 3.726517 GTTCGGTCGGTCGGTCGA 61.727 66.667 5.32 5.32 36.76 4.20
1841 2023 1.457303 GCGCGAATGCAGGATTAGTAG 59.543 52.381 12.10 0.00 42.97 2.57
1860 2058 3.257561 ATCATGCGACGCGTCAGC 61.258 61.111 35.71 34.41 40.74 4.26
1874 2072 3.556423 CCCTGCTCGATCAATCATCATCA 60.556 47.826 0.00 0.00 0.00 3.07
1875 2073 3.001414 CCCTGCTCGATCAATCATCATC 58.999 50.000 0.00 0.00 0.00 2.92
1876 2074 2.371179 ACCCTGCTCGATCAATCATCAT 59.629 45.455 0.00 0.00 0.00 2.45
1877 2075 1.764723 ACCCTGCTCGATCAATCATCA 59.235 47.619 0.00 0.00 0.00 3.07
1878 2076 2.141517 CACCCTGCTCGATCAATCATC 58.858 52.381 0.00 0.00 0.00 2.92
1879 2077 1.813092 GCACCCTGCTCGATCAATCAT 60.813 52.381 0.00 0.00 40.96 2.45
2202 2401 1.201429 GCCTGTGGGGAAGAAGAGGA 61.201 60.000 0.00 0.00 37.23 3.71
2204 2403 0.622665 ATGCCTGTGGGGAAGAAGAG 59.377 55.000 0.00 0.00 36.28 2.85
2207 2406 1.340991 GCTTATGCCTGTGGGGAAGAA 60.341 52.381 0.00 0.00 36.28 2.52
2213 2421 0.748450 CCAATGCTTATGCCTGTGGG 59.252 55.000 0.00 0.00 38.71 4.61
2235 2443 2.490685 GCTCCGTCCGTCTCTTCC 59.509 66.667 0.00 0.00 0.00 3.46
2269 2477 1.845568 CGCACGCGAATGCAAAATAAT 59.154 42.857 15.93 0.00 46.47 1.28
2271 2479 0.167033 ACGCACGCGAATGCAAAATA 59.833 45.000 19.66 0.00 46.47 1.40
2272 2480 1.081509 ACGCACGCGAATGCAAAAT 60.082 47.368 19.66 0.00 46.47 1.82
2403 2616 7.476667 TCGAGTCTTCAATAATCTGAGACTTC 58.523 38.462 5.87 0.44 35.65 3.01
2412 2625 6.721571 TGGTTGTTCGAGTCTTCAATAATC 57.278 37.500 0.00 0.00 0.00 1.75
2413 2626 6.316390 GGATGGTTGTTCGAGTCTTCAATAAT 59.684 38.462 0.00 0.00 0.00 1.28
2476 2695 7.441017 TCTTCTTCTTCTTCTTCTTCAAGGAG 58.559 38.462 0.00 0.00 36.63 3.69
2477 2696 7.366847 TCTTCTTCTTCTTCTTCTTCAAGGA 57.633 36.000 0.00 0.00 0.00 3.36
2478 2697 7.930865 TCTTCTTCTTCTTCTTCTTCTTCAAGG 59.069 37.037 0.00 0.00 0.00 3.61
2479 2698 8.885494 TCTTCTTCTTCTTCTTCTTCTTCAAG 57.115 34.615 0.00 0.00 0.00 3.02
2480 2699 9.323985 CTTCTTCTTCTTCTTCTTCTTCTTCAA 57.676 33.333 0.00 0.00 0.00 2.69
2522 2741 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2523 2742 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2524 2743 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2525 2744 9.898152 TTTCTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
2526 2745 9.898152 TTTTCTTCTTCTTCTTCTTCTTCTTCT 57.102 29.630 0.00 0.00 0.00 2.85
2528 2747 9.898152 TCTTTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
2529 2748 9.898152 TTCTTTTCTTCTTCTTCTTCTTCTTCT 57.102 29.630 0.00 0.00 0.00 2.85
2531 2750 9.679661 ACTTCTTTTCTTCTTCTTCTTCTTCTT 57.320 29.630 0.00 0.00 0.00 2.52
2532 2751 9.679661 AACTTCTTTTCTTCTTCTTCTTCTTCT 57.320 29.630 0.00 0.00 0.00 2.85
2705 2930 2.203209 GGAAGCTATGGGTGGCCG 60.203 66.667 0.00 0.00 31.14 6.13
2714 2947 4.346418 CCACAGTCCTTCTATGGAAGCTAT 59.654 45.833 13.09 0.00 42.96 2.97
2729 2962 0.602905 CCAAAGTCCGTCCACAGTCC 60.603 60.000 0.00 0.00 0.00 3.85
2732 2965 1.071471 AGCCAAAGTCCGTCCACAG 59.929 57.895 0.00 0.00 0.00 3.66
2766 2999 4.336433 CCCATGTGACCATCAACAAGATAC 59.664 45.833 0.00 0.00 34.43 2.24
2767 3000 4.525996 CCCATGTGACCATCAACAAGATA 58.474 43.478 0.00 0.00 34.43 1.98
2768 3001 3.359033 CCCATGTGACCATCAACAAGAT 58.641 45.455 0.00 0.00 37.48 2.40
2889 3127 4.889409 GGATAATCAGACCCATTGCAGAAA 59.111 41.667 0.00 0.00 0.00 2.52
2942 3181 0.438830 CCTACGACAAACTTGAGCGC 59.561 55.000 0.00 0.00 34.65 5.92
2953 3202 0.818445 GGAGAGCCGATCCTACGACA 60.818 60.000 0.00 0.00 33.77 4.35
2988 3237 1.796796 GCATCTCGAAAGCACCCAC 59.203 57.895 0.00 0.00 0.00 4.61
2993 3242 1.811266 GGAGCGCATCTCGAAAGCA 60.811 57.895 11.47 0.00 42.82 3.91
3017 3266 3.617368 CCCTAGACGACACCAGGG 58.383 66.667 5.21 5.21 41.83 4.45
3026 3275 1.278238 GCGAAATCACACCCTAGACG 58.722 55.000 0.00 0.00 0.00 4.18
3119 3368 2.907897 GATCACGTTGGCCGCTAGCT 62.908 60.000 13.93 0.00 43.05 3.32
3120 3369 2.511600 ATCACGTTGGCCGCTAGC 60.512 61.111 4.06 4.06 41.42 3.42
3121 3370 2.230940 CGATCACGTTGGCCGCTAG 61.231 63.158 0.00 0.00 41.42 3.42
3122 3371 2.202690 CGATCACGTTGGCCGCTA 60.203 61.111 0.00 0.00 41.42 4.26
3128 3377 2.885644 CTCGGCCGATCACGTTGG 60.886 66.667 31.19 10.70 37.88 3.77
3129 3378 2.885644 CCTCGGCCGATCACGTTG 60.886 66.667 31.19 15.13 37.88 4.10
3130 3379 3.066190 TCCTCGGCCGATCACGTT 61.066 61.111 31.19 0.00 37.88 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.