>input_sequence_57775
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-----------ATGGCGGGCGCCGGTGCTCTCTTCTTCC---TCTTCTCCTTCTGCCTCCTCGCCCGGCAGGCCGCGGCC
GGCGGGTACGGCGGGTGGCAGAGCGCCCATGCCACCTTCTACGGCGGCGGCGACGCTTCCGGCACCATGGGTAAGTCCCC
GGCGCTGCGGCTGGCGAATGCAATGTGTAGTATAACTCATCATCGCTACTTGAACGCCTGTCACACAGACACTCACGCGC
GCTGGCTGTTTGTTGCGTTTTGCAGGCGGGGCATGCGGGTACGGCAACCTGTACAGCACCGGGTACGGCACGAACACGGC
GGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGACGTGCTACGAGCTGCGCTGCGACAACGCCGGCAGCT
CGTGCCGCCCCGGGTCCATCCTGGTGACGGCCACCAACTTCTGCCCGCCCAACTACGGCCTCCCCAGCGACGACGGCGGC
TGGTGCAACCCTCCCCGCCCCCACTTCGACATGGCCGAGCCGGCCTTCCTCCACATCGCGCAGTACCGCGCCGGCATCGT
GCCCGTCTCCTACAGAAGGTGAGC---------ACAAAGTTT-TCTTCTGTCAAAAATTAAAAAAAGTTACAGTGTAACC
ACGCGGTCCTGGCTCGACCGACCGACCGAACCGATGGGTTAA-TTGACCGGGCGTCGGCCAGCTTGAAGATACGCGAGGA
CCGCGGTTGGTTCGGCCCATA--------------------------AGTGTAGGCGGGCCA------------------
----------------------------------------------------CACT--GCTGCAGATT--TGATACGGTG
TACGCCGATAGGCAGGCTACTGTCTACAGT----ACATCGCATGTGCTGCGCCTTTTAATGTCGCGATTTCACTGTCACC
--GTGTCACGT----------ACTACTAATCCTGCAT----------------TCGCGCTGACGCGTCGCATGATGATGA
TTGATC-GAGCAGGGTGCCGTGCGTGAAGAAGGGGGGCATCCGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTG
CTGGTGACCAACGTGGCCGGCGCCGGCGACGCGCGGTCCGTGTCCATCAAGGGCACGCGCACTGGCTGGCAGGCCATGTC
CCGCAACTGGGGCATGAACTGGCAGAGCAACACCTTCCTGGACGGCCAGTGCCTCTCCTTCCGGGTCACCTCCAGCGACG
GCCGCACCGTCACCAGCAACGCCGCCGCGCCCGCCGGCTGGCACTTCGGCCAGACCTTCGAGGGCGCCCAGTTCTAG---
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-----------------------
>chr1D_1_TraesCS1D01G299700
GTCGCCTTCATCATCACCATGTCCACCGACGCCGAACGTGCCGCCGCCGAGAAAACTGAAGCTGACAAGAAGGCCGCCGA
GGACGCCGCTGCTGCCACCAAAGCCGCGGCCTCTGCATGGCCTACTGGAGGGTATAACTCGTTTATCCCGCTCCTACTGT
TTTCTGTTTTAGCCATGCTAGCGTTATACGTAGATCTTTCTGCAATTAGCGTAGTATGTGCTACTTTGACTGAATATCAG
TATGCGATCATATGTGTCAATGCCATGCTAGTGATTTACTCGTGGATTAATTTAATCGAGAAATTGCCTATTTACTCAAC
AAGAACATGACCGGATTCC-CCCTCCCTAGCTCCCTCCGGCGGTCCGGCCCTGGCTCACACGGCTACACATGCATGGTGG
ACACATCTGCTCTGCTCGCTCACCTTGCCGCCCATGAGTTCCACGGAGTTAAGGCACGCTC----TGCATGCATGCTCTG
CATCCTGCCCATGGCCGAGTCCTGCATGGTCCTGGCTCAGCTAAGCGGCCGGCGAGAGCCATGTGGAGAGTA--------
--GGACCCCACGGCGACTCGTCGCACCACCAGTCCACCACA-C----ACGCGCTCGGCCGGGCAAGCGGTTGGTGCCCGT
TACGTACGCGCGCGCGCGC--------------CCGATGCCAGCCGAGGACACTCGCATGTGCGCCTGATTTG---TATG
TATTAACTGCCGCGCGCCCCCGTGGCCGTGGTCACCCCGCACGTCACAGCCGGCCTTCAATCTCTCATTTTCT----TCT
--CTCTCTTTCTCACCAAATCTTCAGGAAAAA--AAGAAGTGCTATTAACCTGCACGGCCCTGATCGAGCTTGCAATCCA
ACCTCCACCGGCACTGCGCTTTACTTTGGCTATAAATACCCCGGCTGGGAGGAGGTAGCTCCTCACTGCCAACCAGCCAT
TTCGAGCCTAGCTAGCCTTAGTCACCATATCACCTCGAAAGCTAAGCTAGCTTGGTGATACAAGGAAGCTCT------CT
CTCTCCCAGCAATGGCGGGCGCCGGTGCTCTCTTCTTCC---TCTTCTCCTTCTGCCTCCTCGCCCGGCAGGCCGCGGCC
GGCGGGTACGGCGGGTGGCAGAGCGCCCATGCCACCTTCTACGGCGGCGGCGACGCTTCCGGCACCATGGGTAAGTCCCC
GGCGCTGCGGCTGGCGAATGCAATGTGTAGTATAACTCATCATCGCTACTTGAACGCCTGTCACACAGACACTCACGCGC
GCTGGCTGTTTGTTGCGTTTTGCAGGCGGGGCATGCGGGTACGGCAACCTGTACAGCACCGGGTACGGCACGAACACGGC
GGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGACGTGCTACGAGCTGCGCTGCGACAACGCCGGCAGCT
CGTGCCGCCCCGGGTCCATCCTGGTGACGGCCACCAACTTCTGCCCGCCCAACTACGGCCTCCCCAGCGACGACGGCGGC
TGGTGCAACCCTCCCCGCCCCCACTTCGACATGGCCGAGCCGGCCTTCCTCCACATCGCGCAGTACCGCGCCGGCATCGT
GCCCGTCTCCTACAGAAGGTGAGC---------ACAAAGTTT-TCTTCTGTCAAAAATTAAAAAAAGTTACAGTGTAACC
ACGCGGTCCTGGCTCGACCGACCGACCGAACCGATGGGTTAA-TTGACCGGGCGTCGGCCAGCTTGAAGATACGCGAGGA
CCGCGGTTGGTTCGGCCCATA--------------------------AGTGTAGGCGGGCCA------------------
----------------------------------------------------CACT--GCTGCAGATT--TGATACGGTG
TACGCCGATAGGCAGGCTACTGTCTACAGT----ACATCGCATGTGCTGCGCCTTTTAATGTCGCGATTTCACTGTCACC
--GTGTCACGT----------ACTACTAATCCTGCAT----------------TCGCGCTGACGCGTCGCATGATGATGA
TTGATC-GAGCAGGGTGCCGTGCGTGAAGAAGGGGGGCATCCGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTG
CTGGTGACCAACGTGGCCGGCGCCGGCGACGCGCGGTCCGTGTCCATCAAGGGCACGCGCACTGGCTGGCAGGCCATGTC
CCGCAACTGGGGCATGAACTGGCAGAGCAACACCTTCCTGGACGGCCAGTGCCTCTCCTTCCGGGTCACCTCCAGCGACG
GCCGCACCGTCACCAGCAACGCCGCCGCGCCCGCCGGCTGGCACTTCGGCCAGACCTTCGAGGGCGCCCAGTTCTAGTCC
TCCTCT--------TC-TTCCCCACAGGCATAAGCATTGGAGGGAAGAGACGGACGGAGCGTATTCTATTCAAGAAATTA
TTTTGCATTCGCGTGCGTGCGTGCAGGAGGAGGAAGAAAGGCCGGCC----TCTTCGTTATAGTGAAGGAGGAGGCTCCG
GGCTACGCTGAGGCTGCTAATTAGCACCCGCTTAGACGTTTTCCTTCTCTC-ATCGAAGTCTCAGA-TTATTGAAGACTC
GAACAA----CCATCCATCAAGTACCGTACGG-ACGTAGTAGCGTGGCACTCCTCTCCTTGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGAAGTTAATAATTGCA---CTAGTTATGA
TCAGTAGC---AGTACCTTTGGTGGCTTGTACCAGTACTAATTTGTACTACGGGGTGGTGGCCCTTGCGATGAAATTGAA
GATTTGCAAGGCCATATTTATGGATCGATCCATGTTCTAGCTAGCTAGCC--------GGCCACCCATAGCTTCCATAGA
AGGACTGTGGACGGACTTTGGCTGTTTGCTGGGCTGTAGTATCTTGTTGATGG----TCACATGGGCGGGGGACGCCTTG
TGGGGCGTCCATGTCGTGCCTTTTCCGGAGAGGAGCCCCGAGCAGCAG-CGTCGGTTGCCGTGTGCCGTTTCGTGTAGAT
GATAGGTTTCTGCAATGGGTCTGATTA-TCCATCGTCGATGGTTGCGTGAACGCCTCCACGCGCTCAAGT----------
TTGTCGTAGGATCGGCTCTCCTTCTGAAATGGTGCCGTGGGTGCTTTCGAGATGCGCTCCTAGAGCCCTGGTGTCGTCTA
GGGTGTGATTTCGCAGTCCGCAATTGGGCGGGCAAACCGCATCTTCCAGGGCTGGCGCGCTCGTCCTGAAGATGGTGCGC
TAGCGGGAGCTAGCGGCCAA----------------CGTGATCGGCCGAGGACGAGAGCGTCCCATCGTATCAGGTTATC
ACGTACACGTGACTATTGTTTCC
>chr1A_324
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---AACACGACCGGATTCCTCCCTCCCTAGCTCCCTCCGGCGGTCCGGCCCTGCCACACACGGCTACGCGCGCATGGTGG
AGA--------CG---------CCTTGCCGCCCATGAGTTCCACGGAGTTAAGGCACGCTGTGCATGCATGCGTGCTCTG
CATCCTGCCCATGGCCGAGTCCTGCATGGTCCTGGCTCAGCTAAGCGGCCGGCGAGAGCCATGTGGGGAGTAGGGCACCG
CGGGACCCCACGGCGACTCGTCGCGCCACCAGTCCACCACA-CACACGCGCGCTCGGCCGGGCAAGCGGTTGGTGCCCGT
TACGTACGCGCGCGCGCGC--------------CCGATGCCAGCCGAGGACACTCGCATGTGCGCCTGATTTG---TATG
TATTAACTGCCGCGCGCCCCCGTGGCCGTGGTCACCCCGCACGTCAGAGCCGGCCTTCAATCTCCCATTTTCCTCCCTCT
CCCTCTCCCACTCATCAAATCGTCAGGAAAAAAGAAGAAGTGATATTAACCTGCACGGCCCCGATCGAGCTTGCAATCCA
ACCGCCACCGGCACCGAGCTTTACTTTGGCTATATATACCCCGGCTGGGAGGAGGTAGCTCCTCACTGCCAACCAGCCAT
TTCGAGCCTAGCTAGCTTTAGACGCCATATCCCCTCGAAAGCTAAGCTAGCTTGCTGATACAGGGAAGCTCTCCCTCTCT
CTCTCTCAGCAATGGCGGGCACCGGTACTCTCTTCTTCCTCTTCTCCTCCTTCTGCCTCCTGGCCCGGCAGGCCGCGGCC
GGCGGGTACGGCGGGTGGCAGAGCGCCCACGCCACCTTCTACGGCGGCGGCGACGCCTCCGGCACCATGGGTAAGTCCCC
GCCGCCGCGGCTGGCGAATGCAATGCGTAAACGCCTGCCACACAG-----------------ACACAGACACTCACGCGC
GCGGGCTGTTTGTTGGGTTTTGCAGGCGGGGCATGCGGGTACGGCAACCTGTACAGCACCGGGTACGGCACGAACACGGC
GGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGACGTGCTACGAGCTGCGCTGCGACAACGCCGGCAGCT
CGTGCCGGCCGGGGTCCATCCTGGTGACGGCCACCAACTTCTGCCCGCCCAACTACGGCCTCCCCAGCGACGACGGCGGC
TGGTGCAACCCGCCGCGCCCCCACTTCGACATGGCCGAGCCGGCCTTCCTCCACATCGCGCAGTACCGCGCCGGCATCGT
GCCCGTCTCCTACAGAAGGTGAGAAG----------------------------AAAATCAAAAAAGTTACAGTGTACCA
--------------CGACCGACCGATCGAACCGATGGGTTAAATTGACCGGGCGTCGGTCGGCTTGAGGATACGCGAGGA
CCGCGGTTGGTTTGGCCCATA--------------------------AGTTTGGGCGGGCCA------------------
----------------------------------------------------CACC--GCTGCAGATATGTGATACGGTG
CACGCCGATAGGCAGGCCACTGTCCACAGTACTTACATCGCATGTGCTGCGCCTTGTAATGTCGCAGCTTCACTGTCACC
GTGTGTCACGT----------AGTGCTAATCCTGCATGTTACCCCT-------------------------------TGA
TCGATG-GAGCAGGGTGCCGTGCGTGAAGAAGGGGGGCATCCGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTG
CTGGTGACCAACGTGGGCGGCGCCGGCGACGCGCAGTCCGTGTCCATCAAGGGCACGCGCACCGGCTGGCAGGCCATGTC
CCGCAACTGGGGCATGAACTGGCAGAGCAACACCTTCCTGGACGGCCAGTGCCTCTCCTTCCGGGTCACCTCCAGCGACG
GCCGCACCGTCACCAGCAACGCCGCCGCGCCCGCCGGCTGGCACTTCGGCCAGACCTTCGAGGGCGCCCAGTTCTAGTCC
GCTTCCTCCTCTTCTC-TTCTCCACAAGCATAAGCGCTGGAGAGAAGAGACGGA------GCACTATATTCAAGAATTAT
TTTGGCATTCGCGTGCGTGCGTGCAGGAGGAGGAAGAAAGGCCGGCCGGCCTCTTCGTTATAGTGAAGGAGGACGCTCCG
GGCTACGCTGAGGCTGCTAATTAGCACCCGCTTAGACGCTTTCCTTCTCTCGATCAAAGTCTCAAGTTTACTGAAGACTC
GAACAA----CCATCCATCAAGTACCGTACCGTACGTAGCAGCTTGGCACTCCT-----TGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAG-----------------------------AAGAAGTTAATAATGGCA---GTAGTTATGA
TCAGTACTAGAAGTACCTTTGGTGGTTTGTACCAGTACTAATTTGTACTACGGGGTGGTGGCCCTTGCGATGAAATTGAA
GATTTGCAAGGCCATATTTATGGATCCATCCATGTTCTAGCTAGCTAGCTACCTAGCTGGCCACCCGTAGCCTCCATAGA
CCGAGTGTGGACGGACTTTGGCTGTTTGCTGGGCTGTA---TCGTGTTGATGGTCACTCACATGGGCGGGGGACGCCTTG
TGGGGCGTCCATGTCGTGCCTTTTCCGGAGAGGAGCCAGGGACAGCGCCCGTCGGTTGCCGTGCTCCGTTTCGTGTAGAT
GATAGGCCTCTGCAATGGGTCTGATCA-TCCATCGTCGACGGTTGCGTGAACGCCTCCGCACGCTCAAGT----------
TGGTCGTAGGGTCGGCTCTCCTTCTGAAATGGCGCCATGGGAGCGCGCCGTCTAG-------------------------
GGGTGTGATTTCGCAGTCCAGAATTGGGCGGGCAAACCGCATCTTCCAGGGCTGGCGCGCTCGTCCTGAAGATGGTGTGC
TGGCGGG------------A----------------CGTGATCGGGCGTGGACGAGAGCGTCCCATCGTGTCACGTTATC
ACGTACGCGTGACTATTGTTTCC
>chr1B_324
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AACATGACCGGATTCCCC--TCCCTCCCTCCCTCAGGCGGTCCGGCCCTGCCACACACGGCTATGCATGCATGGTCG
ACGCGTCTGCTCG---------CCTTGCCGCCCATGAGTTCCACGGAGTTAAGGCACGCTC----TGCATGCATGCTCTG
CATCCTGCTCATGGCCGAGTCCTGCATGGTCCTGGCTCAGCTAAGCAGCCGGTGAGAGCCATGTGGAGAGTAGGGCGCCC
CCGGACCCCACGGCGACTCGTCGCGCCACCAGTCCACCCCACCACACACGCGCTCGGCCGGGCAAGCGGTTGGTGCCCGT
TACGTACGCGCGCGCGCGCGCTCGGGGCCTCGCCCGATGCCAGCCGAGGACACTCGCATGTACGCCTGATTTGTAGTATG
TATTAACTGCCGCGCGCCTCCGTGGCCGTGGTCACCCCGCACGTCACAGCCGGCCTTCAATCTCTCATTTTCT----TCT
CTCTCTCTCTCTCACCAAATCTTCAGGAAAAA--AAGAAGTGCTATTAACCTGCACGGCCCTGATCGAGCTTGCAATCCA
ACCGCCACCGGCAATGAGCTTTACTTTGGCTATAAATACCCCGGCTGGGAGGAGGTAGCTCCTCACTGCCAACCAGCCAT
TTCGAGCCTAGCTAGCTTTAGTCACCATAGCCCCTCGAAAGCTAAGCTAGCTTGCTGATACAAGGAAGCT----------
CTCTCCCAGCGATGGCGGCTGCCGGTGCTCTCTTTTTCCTATTCTCCTCCTTCTGCCTCCTCGCCCGGCAGGCCGCGGCC
GGCGGGTACGGCGGCTGGCAGAGCGCCCATGCCACCTTCTACGGCGGCGGCGACGCCTCCGGCACCATGGGTATGTCCCC
GGCGCTGCGGCTGGCGAATGCAATGTGTATAAC------TCATCGCTACTTGAACGCCTGTCACACAGACACTCACGCGC
GCTGGCTGTTTGTTGGGTTTTGCAGGCGGGGCATGCGGGTATGGCAACCTGTACAGCACTGGGTACGGCACGAACACGGC
GGCGCTGAGCACAGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTGCGCTGCGACAACGCCGGCAGCT
CGTGCCGGCCGGGGTCCATCCTGGTGACGGCCACCAACTTCTGCCCGCCCAACTACGGCCTCCCCAGCGACGACGGCGGC
TGGTGCAACCCGCCCCGACCCCACTTCGACATGGCCGAGCCGGCCTTCCTCCACATCGCGCAGTACCGCGCCGGCATCGT
GCCCGTCTCCTACAGAAGGTGAGA---------ACAAAGTTT-TCC---GTCAAAAATGAAAAAAAGTTACAGTGTA---
-----------------CCGACCGACCGAACCGATGGGTTAA-TTGACTGGGCGTCGGTCGGCTTGAAGATACGCGAGGA
CCGCGGTTGGTTCGGTCCATA--------------------------AGTTTAGGCGGGCCA------------------
----------------------------------------------------CACT--GCTGCAGATT--TGATACGGTG
CACGCCGATAGGCAGGCTACTGACTACAG---TTACATCGCATGTGCTGCGCCTTTTAATGTCGCGATTTCAC-GTCACC
GTGTCACGTAGTAGTACTAAGAGTACTAATCCTGCATGTTACCCCTCGCGATTTCGCACTGACGCGTCGCA---------
-TGATC-GAGCAGGGTGCCGTGCGTGAAGAAGGGGGGCATCCGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTG
CTGGTGACCAACGTGGCCGGCGCCGGCGACGCGCGGTCCGTGTCCATCAAGGGCACGCGCACCGGCTGGCAGGCCATGTC
CCGCAACTGGGGCATGAACTGGCAGAGCAACACCTTCCTGGACGGCCAGTGCCTCTCCTTCCGGGTCACCTCCAGCGACG
GCCGCACCGTCACCAGCAACGCCGCCGCGCCCGCCGGCTGGCACTTCGGCCAGACCTTCGAGGGCGCCCAGTTCTAGTCT
GCTCCCTCCTCTTCTCCTTCTCCACAGGCATAAGCATTGAAGAGAAGAGACGGACGGAGCGTATTCTATTGAAGAATTAT
TTTGCATTC-----GCGTGCGTGCAGGAGGAGGAAGAAAGGCCGGCC----TCTTCGTTATAGTGAAGGAGGAGGCTCCG
GGCTACGCTGAGGCTGCTAATTAGCACCCGCTTAGACGTTTTCCTTCTCTC-ATCAAAGTCTCAAGTTTATTGAGGACTT
GAACAACCATCCATCCATCAAGTACCGTACGG-ACGTAGTAGCGTGGCGCTCAT-----TGAAGAAGAAGAAGAAGAA--
-------------------------------------------------AAGAAGTTAATAATTGCATTACTAGTTATGA
TCAGTAGC---AGTACCTTTGGTGGTTTGTACCAGTACTAATTTGTACTACGGGGTGGTGGCCCTTGTGATGAAATAGAA
GATTTGCAAGGCCATATTTATGGATCGATCCATGTTCTAGCTAGCTAGCT--------GGCCACCCGTAGCTTCCATAAA
ACAAGTGTGGACGGACTTTGGCTGTTTGCTGGGCTGTA---TCTTGTTGATGG----CCACATGGGCGGGAGACGCCTTG
TGGGGCGTCCATGTCGTGCCTTTTCCGGAGAGGAGCCACGGGCAGCGTCGGTCGT----CGTGTGCCGTTTCGTGTAGAT
GATAGGCTTCTGCAAATGGGAATGATTGTCCATCGTCGATGGTTGCGTGAACGCCTCCACACGCTCAAGTTTGCCAATGG
TGGTCGTAGGATCGGCTCCCCTTTTGAAATGGTGCCATGGGAGCTTTCGAGATACACTCCTAGAGTCCTGGTGTTGTCTA
GGGTGTGATTTCGCAGTCCGCAATTGGACGGGCAAACCGCATCTTCCAGGGCTGGCGTGCTCGTCCTGAAGACGGTGTGC
TGGCGGG------------AGCTAGCAGATAGCTAACGTGATCGCCCGAGGACGCGAGCGTCCCATCGTATCACGTTATC
ATGAT-ACGTGACTATTGTTTCC
>chr3D_1243
GT------------------------------------------------------------------------------
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-----------------TTGTTCAGGCGGCGCGTGCGGCTACGGGAACCTGTACAGCACCGGGTACGGCACGAACACGGC
GGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTCAGGTGCCAGGACGTGAGCAGCT
CCTGCCTGCCGGGCAGCATCACCATCACCGCCACCAACCTCTGCCCGCCCAACTACGCGCTGCCCAACGACGACGGCGGC
TGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCCGCCTACCTCCAGATCGGCATCTACCGCGCCGGCATCGT
CGCCGTCGCCTACCGTAGGTGAGCCATT----------------------TACAAACTTCCTTAATCTGGTCCCGTGTCG
GTGTCGATGGACCATGTTAG---------------------------------GTGGGCCAGAGTAAAGATTTGGTGC--
A--------GTTCGGTCTGACAGCGACTCTCGGCGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCACCATGA
TGTGTTG----TTCCAAGTTGCATGATCCAA--------------------TCACTGAACTGAAGATT--TCCGTTTCGC
CGACTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TGTGTGCAGGGTGCCGTGTGTGAAGAAGGGCGGGATCAGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTG
CTGGTGACCAACGTGGCCGGCGCCGGCGACGTGCAGTCCGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGC
CCGCAACTGGGGCCAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACG
GCCGCACCGTCACCAGTAACAACGTCGCCCCCGCCGGCTGGGCCTTCGGCCAGACCTTCGAAGGATCCCAGTTCTAG---
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-----------------------
>chr3D_1247
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--------------------TGCAGGCGGCGCGTGCGGCTACGGGAACCTGTACAGCACGGGGTACGGCACGAACACGGC
GGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTCAAGTGCCAGGACGTGAGCAGCT
CCTGCCTGCCGGGCAGCATCACCATCACCGCCACCAACCTCTGCCCGCCCAACTACGCGCTGCCCAACGACGACGGAGGC
TGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCCGCCTACCTCCAGATCGGCATCTACCGCGCCGGCATCGT
CGCCGTCGCCTACCGGAGGTGAGCCACT----------------------TACAAACTTCCTTAATCTGGTCCCGTGTCG
GTGTCGATGGACCATGGTAG---------------------------------GTGGGCCAGAGTGCAGATTTGGTGCAG
A--------GTTCGGCCTGACAGCGACTCTCGGTGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCACCATGA
TGTGTTG----TTCCAAGTTGCATGATCCAA--------------------TCACTGAACTGAAGATT--GTTGTTTCGC
CGACTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TGTGTGCAGGGTGCCGTGTGTGAAGAAGGGCGGGATCAGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTG
CTGGTGACCAACGTGGCCGGCGCCGGCGACGTGCAGTCGGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGC
CCGCAACTGGGGCCAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACG
GCCGCACCGTCACCAGTAACAACGTCGCCCCCGCCGGCTGGGCCTTCGGCCAGACCTTCGAAGGAAGCCAGTTCTAG---
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>chr3B_1247
--------------------------------------------------------------------------------
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--------------------TGCAGGCGGCGCGTGCGGCTACGGGAACCTGTACAGCACGGGGTACGGCACGAACACGGC
GGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTCAAGTGCCAGGACGTGAGCAGCT
CCTGCCTGCCGGGCAGCATCACCATTACCGCCACCAACCTGTGCCCGCCCAACTACGCGCTGCCCAACGACGACGGCGGC
TGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCGGCCTACCTCCAGATCGGAATCTACCGCGCCGGCATCGT
GGCCGTCGCCTACAGGAGGTGAGGCAGCCAGTTACAAACCTTCTCGCGTGCACAAACTTCCTTAATCTGGTCCCGTGTCG
GTGTCGATGGACCATGTTAG---------------------------------GTGGGCCAGAGTGCAGATTTGGTGT--
A--------GTTTGGTCTGACAGCGACTCTCGGTGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCACCACGA
TGTGTTG----TTCCAAGTTGCATGATCCACTAGTAGAAACTGTTGCGGTTTCACTGAACTGAAGATT--TGTGTTTCGC
CGATC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
---ATG-GTGCAGGGTGCCGTGCGTGAAGAAGGGTGGGATCAGGTTCACCATCAACGGGCACTCCTACTTCAACCTGGTG
CTGGTGACCAACGTGGCCGGCGCCGGCGACGTGCAGTCCGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGC
CCGCAACTGGGGCCAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACG
GCCGCACCGTCACCAGCAACAACGCCGCCCCCGCCGGCTGGTCCTTCGGCCAGACCTTCGAAGGAGCCCAGTTCTAG---
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>chr3B_1247
--------------------------------------------------------------------------------
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--------------------TGCAGGCGGCGCGTGCGGCTACGGGAACCTGTACAGCACGGGGTACGGCACGAACACGGC
GGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTCAAGTGCCAGGACGTGAGCAGCT
CCTGCCTGCCGGGCAGCATCACCATCACCGCCACCAACCTGTGCCCGCCCAACTACGCGCTGCCCAACGACGACGGCGGC
TGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCGGCCTACCTCCAGATCGGAATCTACCGCGCCGGCATCGT
GGCCGTCGCCTACAGGAGGTGAGGCAGCCAGTTACAAACCTTCTCGCGTGCACAAACTTCCTTAATCTGGTCCCGTGTCG
GTGTCGATGGACCATGTTAG---------------------------------GTGGGCCAGAGTGCAGATTTGGTGT--
A--------GTTTGGTCTGACAGCGACTCTCGGTGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCTCCATGA
TGTGTTG----TTCCAAGTTGCATGATCCAA--------------------TCACTGAACTGAAGATT--TCCGTTTCCC
TGGTTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TG-GTGCAGGGTGCCGTGTGTGAAGAAGGGTGGGATGAGGTTCACCATCAACGGCCACTCTTACTTCAACCTGGTG
CTGGTGACCAACGTGGCCGGCGCCGGCGACGTGCAGTCCGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGC
CCGCAACTGGGGCCAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACG
GCCGCACCGTCACCAGCAACAACGCCGCCCCCGCCGGCTGGTCCTTCGGCCAGACCTTCGAAGGAGCCCAGTTCTAG---
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>chr3A_1247
--------------------------------------------------------------------------------
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--------------------TGCAGGCGGCGCGTGCGGGTACGGGAACCTGTACAGCACGGGGTACGGCACGAACACGGC
GGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTCAAGTGCCAGGACGTGAGCAGCT
CCTGCCTGCCGGGCAGCATCACCATCACCGCCACCAACCTCTGCCCGCCCAACTACGCGCTGCCCAACGACGACGGCGGC
TGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCGGCCTACCTCCAGATCGGCATCTACCGCGCCGGCATCGT
CGCCGTCGCCTACCGGAGGTGAGCCAGCCAGTTACAAACCTT-TCGCGTGTACAAACTTCCTTAATCCGGTCCCGTGTCG
GTGTCGATGGACCATGTTAG---------------------------------GTGGGCCAGAGTGCAGATTTGGTGC--
A--------GTTCGGTCTGACAGCGACTCTCGGTGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCACCATGA
TGTGTTCCAACTTCCAAGTTGCATGATCCAA--------------------TCACT--ACTGAAGATT--TGTGTTTCAC
CGATTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TG-CTGCAGGGTGCCGTGCGTGAAGAAGGGTGGGATCAGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTG
CTGGTGACGAACGTGGCCGGCGCCGGCGACGTGCAGTCGGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGC
CCGCAACTGGGGCCAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACG
GCCGCACCGTCACCAGCAACAACGTCGCCCCCGCCGGCTGGTCCTTCGGCCAGACCTTCGAAGGAAGCCAGTTCTAG---
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-----------------------
>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------------------------------------------------S-S-----------S------------
----S-------SSSSSSSSSS----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
---S------------S---------------------------------------------------------------
----------------S--------------S----------------------S-------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------S-----------------------
-----------------------------SS-SSSSS-S-----------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
-------S--S---------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------------------------------------SSS-----------------------------S-S
SS-SS-SSSSSS-S------------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S----------------------------------S-------------SSSSSS---
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-S--S--------------S---------------------S---------------------------------S-SS
---S----------------------------------------------------------------------------
-------------------------------------------------------S--------SS--------------
------------------------------------------------------SSSSS---------------------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
-------------------------S------------------------------------------------------
-------------------------------------------------S----------------S-------------
-S--S---------------------------------SSS---------------------------------------
-------------------------------------S--S-----SS--------------------------------
------S-----------------------------------------------------S-------------------
-S----------------------------------S----S-----------S-S---------S--------S-----
-----------------------------------------------------------------------------S--
-S-----SSSSSSSSSSSS------------------------------------------------------S------
-----------------------
>forward_416
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GTGG
ACACATCTGCTCTGCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>reverse_2479
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TA
TTTTGCATTCGCGTGCGT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
