Multiple sequence alignment - TraesCS1D01G296300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G296300 chr1D 100.000 2588 0 0 1 2588 394410444 394407857 0.000000e+00 4780
1 TraesCS1D01G296300 chr1D 92.426 1175 50 12 577 1738 394452594 394451446 0.000000e+00 1640
2 TraesCS1D01G296300 chr1D 85.571 499 32 20 52 537 394453070 394452599 1.080000e-133 486
3 TraesCS1D01G296300 chr4B 91.748 2145 87 28 502 2588 326093726 326095838 0.000000e+00 2898
4 TraesCS1D01G296300 chr4B 87.731 432 27 12 72 494 326093280 326093694 5.010000e-132 481
5 TraesCS1D01G296300 chr1A 89.768 2287 100 48 370 2582 490893234 490895460 0.000000e+00 2804
6 TraesCS1D01G296300 chr1A 83.388 307 24 10 39 337 490892946 490893233 2.550000e-65 259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G296300 chr1D 394407857 394410444 2587 True 4780.0 4780 100.0000 1 2588 1 chr1D.!!$R1 2587
1 TraesCS1D01G296300 chr1D 394451446 394453070 1624 True 1063.0 1640 88.9985 52 1738 2 chr1D.!!$R2 1686
2 TraesCS1D01G296300 chr4B 326093280 326095838 2558 False 1689.5 2898 89.7395 72 2588 2 chr4B.!!$F1 2516
3 TraesCS1D01G296300 chr1A 490892946 490895460 2514 False 1531.5 2804 86.5780 39 2582 2 chr1A.!!$F1 2543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 549 0.038159 GAGAATATCGCACCCCCGAG 60.038 60.0 0.0 0.0 40.97 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 2615 0.109319 AATTGCGCCGCTCGAAAAAT 60.109 45.0 11.67 0.0 39.54 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.217035 CGACCCATCGCCATTTCA 57.783 55.556 0.00 0.00 42.43 2.69
23 24 2.706636 CGACCCATCGCCATTTCAT 58.293 52.632 0.00 0.00 42.43 2.57
24 25 1.877637 CGACCCATCGCCATTTCATA 58.122 50.000 0.00 0.00 42.43 2.15
25 26 2.217750 CGACCCATCGCCATTTCATAA 58.782 47.619 0.00 0.00 42.43 1.90
26 27 2.813754 CGACCCATCGCCATTTCATAAT 59.186 45.455 0.00 0.00 42.43 1.28
27 28 3.120199 CGACCCATCGCCATTTCATAATC 60.120 47.826 0.00 0.00 42.43 1.75
28 29 4.074970 GACCCATCGCCATTTCATAATCT 58.925 43.478 0.00 0.00 0.00 2.40
29 30 4.473444 ACCCATCGCCATTTCATAATCTT 58.527 39.130 0.00 0.00 0.00 2.40
30 31 4.279169 ACCCATCGCCATTTCATAATCTTG 59.721 41.667 0.00 0.00 0.00 3.02
31 32 4.232221 CCATCGCCATTTCATAATCTTGC 58.768 43.478 0.00 0.00 0.00 4.01
32 33 3.988379 TCGCCATTTCATAATCTTGCC 57.012 42.857 0.00 0.00 0.00 4.52
33 34 3.286353 TCGCCATTTCATAATCTTGCCA 58.714 40.909 0.00 0.00 0.00 4.92
34 35 3.066621 TCGCCATTTCATAATCTTGCCAC 59.933 43.478 0.00 0.00 0.00 5.01
35 36 3.721035 GCCATTTCATAATCTTGCCACC 58.279 45.455 0.00 0.00 0.00 4.61
36 37 3.132646 GCCATTTCATAATCTTGCCACCA 59.867 43.478 0.00 0.00 0.00 4.17
37 38 4.382901 GCCATTTCATAATCTTGCCACCAA 60.383 41.667 0.00 0.00 0.00 3.67
38 39 5.111293 CCATTTCATAATCTTGCCACCAAC 58.889 41.667 0.00 0.00 0.00 3.77
39 40 5.337410 CCATTTCATAATCTTGCCACCAACA 60.337 40.000 0.00 0.00 0.00 3.33
40 41 5.798125 TTTCATAATCTTGCCACCAACAA 57.202 34.783 0.00 0.00 0.00 2.83
41 42 5.389859 TTCATAATCTTGCCACCAACAAG 57.610 39.130 0.00 0.00 44.76 3.16
120 133 0.390472 CAACCACGAAGAGAGGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
147 160 1.581447 CGGGCAGAGAAAAGGTTGC 59.419 57.895 0.00 0.00 35.87 4.17
242 263 3.851128 GCAGGAGTAGGACGGCCC 61.851 72.222 1.76 0.00 33.31 5.80
260 282 1.269012 CCATTCACCCTTGGCAATGT 58.731 50.000 0.00 0.00 29.32 2.71
261 283 2.455557 CCATTCACCCTTGGCAATGTA 58.544 47.619 0.00 0.00 29.32 2.29
262 284 2.166254 CCATTCACCCTTGGCAATGTAC 59.834 50.000 0.00 0.00 29.32 2.90
263 285 1.529226 TTCACCCTTGGCAATGTACG 58.471 50.000 0.00 0.00 0.00 3.67
270 292 3.181491 CCCTTGGCAATGTACGTAATTGG 60.181 47.826 21.35 11.33 35.88 3.16
290 312 3.936564 GGCACAAATTCCAGCCATAAAA 58.063 40.909 9.39 0.00 46.26 1.52
341 363 4.392138 CAGTCAAAGATCCCCGTAGAAAAC 59.608 45.833 0.00 0.00 0.00 2.43
422 444 4.243399 CAGCTCGCTCGCTCGCTA 62.243 66.667 0.00 0.00 38.41 4.26
423 445 4.244802 AGCTCGCTCGCTCGCTAC 62.245 66.667 0.92 0.00 34.57 3.58
424 446 4.538283 GCTCGCTCGCTCGCTACA 62.538 66.667 0.00 0.00 0.00 2.74
475 497 2.202892 GACCAGCGATCGGAACCC 60.203 66.667 18.30 0.00 0.00 4.11
494 548 1.802337 CGAGAATATCGCACCCCCGA 61.802 60.000 0.00 0.00 45.98 5.14
495 549 0.038159 GAGAATATCGCACCCCCGAG 60.038 60.000 0.00 0.00 40.97 4.63
496 550 0.759436 AGAATATCGCACCCCCGAGT 60.759 55.000 0.00 0.00 40.97 4.18
497 551 0.319641 GAATATCGCACCCCCGAGTC 60.320 60.000 0.00 0.00 40.97 3.36
498 552 1.755393 AATATCGCACCCCCGAGTCC 61.755 60.000 0.00 0.00 40.97 3.85
499 553 2.939760 ATATCGCACCCCCGAGTCCA 62.940 60.000 0.00 0.00 40.97 4.02
516 570 2.910479 ACAGTCCACGGCGACAGA 60.910 61.111 16.62 3.72 35.07 3.41
612 673 1.664321 TAGCTTCCGAGTTCCGCCTC 61.664 60.000 0.00 0.00 36.84 4.70
774 852 0.250338 GCCCCGATATTTCCTCGCTT 60.250 55.000 0.00 0.00 34.84 4.68
777 855 1.541233 CCCGATATTTCCTCGCTTGCT 60.541 52.381 0.00 0.00 34.84 3.91
778 856 2.213499 CCGATATTTCCTCGCTTGCTT 58.787 47.619 0.00 0.00 34.84 3.91
779 857 2.032549 CCGATATTTCCTCGCTTGCTTG 60.033 50.000 0.00 0.00 34.84 4.01
780 858 2.600792 CGATATTTCCTCGCTTGCTTGC 60.601 50.000 0.00 0.00 0.00 4.01
781 859 2.113860 TATTTCCTCGCTTGCTTGCT 57.886 45.000 0.00 0.00 0.00 3.91
782 860 0.807496 ATTTCCTCGCTTGCTTGCTC 59.193 50.000 0.00 0.00 0.00 4.26
783 861 1.568612 TTTCCTCGCTTGCTTGCTCG 61.569 55.000 0.00 0.00 0.00 5.03
784 862 2.715532 TTCCTCGCTTGCTTGCTCGT 62.716 55.000 0.00 0.00 0.00 4.18
785 863 2.320587 CCTCGCTTGCTTGCTCGTT 61.321 57.895 0.00 0.00 0.00 3.85
786 864 1.154525 CTCGCTTGCTTGCTCGTTG 60.155 57.895 0.00 0.00 0.00 4.10
809 887 4.812476 TTCCACCGATCGCCTGCG 62.812 66.667 10.32 4.92 41.35 5.18
1042 1147 4.309950 GGACGGCGAACCAGGTGT 62.310 66.667 16.62 0.00 34.57 4.16
1666 1779 1.564348 CCCCACCTGTAAGCCACTTAT 59.436 52.381 0.00 0.00 0.00 1.73
1691 1816 0.249955 TAAAGCCCGTCCCGGTTTAG 59.750 55.000 0.00 0.00 46.80 1.85
1700 1825 0.323629 TCCCGGTTTAGCAACAGAGG 59.676 55.000 0.00 0.00 34.15 3.69
1707 1832 3.578688 GTTTAGCAACAGAGGCAAATGG 58.421 45.455 0.00 0.00 32.54 3.16
1926 2053 8.280497 CGGTGTAGGCTGTACATTAAAATTATC 58.720 37.037 0.00 0.00 0.00 1.75
1981 2108 4.341783 GGTGGCAGCTCAGTGGCT 62.342 66.667 9.90 0.75 43.34 4.75
2004 2131 2.346099 GAGCTAGTGGCATCTCGATC 57.654 55.000 0.00 0.00 44.79 3.69
2058 2185 4.291249 AGCTCACCCTTAATTAAGTCCCAA 59.709 41.667 20.99 4.92 0.00 4.12
2160 2287 5.105752 GCCTATCTAATGACTAATGGAGCG 58.894 45.833 0.00 0.00 0.00 5.03
2161 2288 5.336849 GCCTATCTAATGACTAATGGAGCGT 60.337 44.000 0.00 0.00 0.00 5.07
2239 2367 1.410882 CCCCTCTGGATCTCTTTCGAC 59.589 57.143 0.00 0.00 35.39 4.20
2246 2374 2.884087 GATCTCTTTCGACCGGCGCA 62.884 60.000 10.83 0.00 40.61 6.09
2247 2375 2.501223 ATCTCTTTCGACCGGCGCAA 62.501 55.000 10.83 1.90 40.61 4.85
2248 2376 2.047655 TCTTTCGACCGGCGCAAT 60.048 55.556 10.83 0.00 40.61 3.56
2249 2377 1.635663 CTCTTTCGACCGGCGCAATT 61.636 55.000 10.83 0.00 40.61 2.32
2268 2400 5.560953 GCAATTAATTAGTGCGATGGAGGAC 60.561 44.000 0.00 0.00 0.00 3.85
2325 2457 1.945354 GATCAGGACGCCCGTCTTCA 61.945 60.000 18.78 0.00 44.04 3.02
2329 2461 1.218316 GGACGCCCGTCTTCATCTT 59.782 57.895 18.78 0.00 44.04 2.40
2330 2462 1.084370 GGACGCCCGTCTTCATCTTG 61.084 60.000 18.78 0.00 44.04 3.02
2331 2463 1.696832 GACGCCCGTCTTCATCTTGC 61.697 60.000 13.10 0.00 41.57 4.01
2332 2464 1.448540 CGCCCGTCTTCATCTTGCT 60.449 57.895 0.00 0.00 0.00 3.91
2333 2465 0.179111 CGCCCGTCTTCATCTTGCTA 60.179 55.000 0.00 0.00 0.00 3.49
2334 2466 1.539065 CGCCCGTCTTCATCTTGCTAT 60.539 52.381 0.00 0.00 0.00 2.97
2436 2579 4.397730 TGATTGTTGGGGTTATCATGAACG 59.602 41.667 0.00 0.00 0.00 3.95
2465 2608 3.775654 GCCACGGCTAGAGCACCT 61.776 66.667 0.00 0.00 44.36 4.00
2471 2615 1.040646 CGGCTAGAGCACCTTGGATA 58.959 55.000 3.54 0.00 44.36 2.59
2560 2704 7.518161 TGATACGCAATGCTATATTAGTTTGC 58.482 34.615 2.94 11.22 40.46 3.68
2561 2705 5.108385 ACGCAATGCTATATTAGTTTGCC 57.892 39.130 2.94 3.54 40.61 4.52
2562 2706 4.023193 ACGCAATGCTATATTAGTTTGCCC 60.023 41.667 2.94 0.00 40.61 5.36
2563 2707 4.023279 CGCAATGCTATATTAGTTTGCCCA 60.023 41.667 2.94 0.00 40.61 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.074970 AGATTATGAAATGGCGATGGGTC 58.925 43.478 0.00 0.00 0.00 4.46
7 8 4.104383 AGATTATGAAATGGCGATGGGT 57.896 40.909 0.00 0.00 0.00 4.51
8 9 4.801891 CAAGATTATGAAATGGCGATGGG 58.198 43.478 0.00 0.00 0.00 4.00
9 10 4.232221 GCAAGATTATGAAATGGCGATGG 58.768 43.478 0.00 0.00 0.00 3.51
10 11 4.232221 GGCAAGATTATGAAATGGCGATG 58.768 43.478 0.00 0.00 0.00 3.84
11 12 3.890756 TGGCAAGATTATGAAATGGCGAT 59.109 39.130 0.00 0.00 39.20 4.58
12 13 3.066621 GTGGCAAGATTATGAAATGGCGA 59.933 43.478 0.00 0.00 39.20 5.54
13 14 3.374745 GTGGCAAGATTATGAAATGGCG 58.625 45.455 0.00 0.00 39.20 5.69
14 15 3.132646 TGGTGGCAAGATTATGAAATGGC 59.867 43.478 0.00 0.00 37.12 4.40
15 16 5.111293 GTTGGTGGCAAGATTATGAAATGG 58.889 41.667 0.00 0.00 0.00 3.16
16 17 5.722263 TGTTGGTGGCAAGATTATGAAATG 58.278 37.500 0.00 0.00 0.00 2.32
17 18 5.999205 TGTTGGTGGCAAGATTATGAAAT 57.001 34.783 0.00 0.00 0.00 2.17
18 19 5.538053 TCTTGTTGGTGGCAAGATTATGAAA 59.462 36.000 3.92 0.00 44.90 2.69
19 20 5.076182 TCTTGTTGGTGGCAAGATTATGAA 58.924 37.500 3.92 0.00 44.90 2.57
20 21 4.661222 TCTTGTTGGTGGCAAGATTATGA 58.339 39.130 3.92 0.00 44.90 2.15
48 49 2.762887 TCCGCTCTCACATTGATCTTCT 59.237 45.455 0.00 0.00 0.00 2.85
66 67 0.175989 GTGCTCCTAGGGTTTCTCCG 59.824 60.000 9.46 0.00 37.00 4.63
98 103 1.376037 CCTCTCTTCGTGGTTGCCC 60.376 63.158 0.00 0.00 0.00 5.36
120 133 0.465705 TTCTCTGCCCGCTTATCCAG 59.534 55.000 0.00 0.00 0.00 3.86
193 206 1.726791 CATCTGTTTCGAGGGTTCGTG 59.273 52.381 0.00 0.00 46.72 4.35
242 263 2.159393 CGTACATTGCCAAGGGTGAATG 60.159 50.000 0.00 0.00 33.71 2.67
260 282 4.380023 GCTGGAATTTGTGCCAATTACGTA 60.380 41.667 0.00 0.00 32.95 3.57
261 283 3.613910 GCTGGAATTTGTGCCAATTACGT 60.614 43.478 0.00 0.00 32.95 3.57
262 284 2.923020 GCTGGAATTTGTGCCAATTACG 59.077 45.455 0.00 0.00 32.95 3.18
263 285 3.261580 GGCTGGAATTTGTGCCAATTAC 58.738 45.455 10.38 0.00 44.34 1.89
270 292 4.268405 CGATTTTATGGCTGGAATTTGTGC 59.732 41.667 0.00 0.00 0.00 4.57
276 298 2.665165 TGGCGATTTTATGGCTGGAAT 58.335 42.857 0.00 0.00 34.17 3.01
303 325 7.383102 TCTTTGACTGGCAATTATTTCTCTC 57.617 36.000 0.00 0.00 36.15 3.20
305 327 7.199078 GGATCTTTGACTGGCAATTATTTCTC 58.801 38.462 0.00 0.00 36.15 2.87
341 363 1.182673 CGATTTTTCAGCGGCGAATG 58.817 50.000 12.98 8.88 0.00 2.67
414 436 1.113253 CGACTTGTATGTAGCGAGCG 58.887 55.000 0.00 0.00 0.00 5.03
417 439 2.086094 TGGACGACTTGTATGTAGCGA 58.914 47.619 0.00 0.00 0.00 4.93
418 440 2.554806 TGGACGACTTGTATGTAGCG 57.445 50.000 0.00 0.00 0.00 4.26
419 441 3.381949 GGATGGACGACTTGTATGTAGC 58.618 50.000 0.00 0.00 0.00 3.58
420 442 3.383505 TGGGATGGACGACTTGTATGTAG 59.616 47.826 0.00 0.00 0.00 2.74
421 443 3.367321 TGGGATGGACGACTTGTATGTA 58.633 45.455 0.00 0.00 0.00 2.29
422 444 2.184533 TGGGATGGACGACTTGTATGT 58.815 47.619 0.00 0.00 0.00 2.29
423 445 2.979814 TGGGATGGACGACTTGTATG 57.020 50.000 0.00 0.00 0.00 2.39
424 446 2.368875 GGATGGGATGGACGACTTGTAT 59.631 50.000 0.00 0.00 0.00 2.29
494 548 3.991051 CGCCGTGGACTGTGGACT 61.991 66.667 0.00 0.00 0.00 3.85
495 549 3.986006 TCGCCGTGGACTGTGGAC 61.986 66.667 0.00 0.00 0.00 4.02
496 550 3.986006 GTCGCCGTGGACTGTGGA 61.986 66.667 0.00 0.00 34.09 4.02
497 551 4.293648 TGTCGCCGTGGACTGTGG 62.294 66.667 4.95 0.00 37.81 4.17
498 552 2.693250 TTCTGTCGCCGTGGACTGTG 62.693 60.000 4.95 0.00 37.81 3.66
499 553 2.495409 TTCTGTCGCCGTGGACTGT 61.495 57.895 4.95 0.00 37.81 3.55
500 554 2.022129 GTTCTGTCGCCGTGGACTG 61.022 63.158 4.95 4.62 37.81 3.51
640 701 1.366854 CGGCCGTCCCTTTTAAGCTC 61.367 60.000 19.50 0.00 0.00 4.09
774 852 2.669569 GGAGCCAACGAGCAAGCA 60.670 61.111 0.00 0.00 34.23 3.91
777 855 1.302511 GGAAGGAGCCAACGAGCAA 60.303 57.895 0.00 0.00 34.23 3.91
778 856 2.347490 GGAAGGAGCCAACGAGCA 59.653 61.111 0.00 0.00 34.23 4.26
779 857 2.035442 GTGGAAGGAGCCAACGAGC 61.035 63.158 0.00 0.00 40.20 5.03
780 858 1.376037 GGTGGAAGGAGCCAACGAG 60.376 63.158 0.00 0.00 40.20 4.18
781 859 2.747686 GGTGGAAGGAGCCAACGA 59.252 61.111 0.00 0.00 40.20 3.85
783 861 0.744771 GATCGGTGGAAGGAGCCAAC 60.745 60.000 0.00 0.00 42.35 3.77
784 862 1.602237 GATCGGTGGAAGGAGCCAA 59.398 57.895 0.00 0.00 40.20 4.52
785 863 2.721167 CGATCGGTGGAAGGAGCCA 61.721 63.158 7.38 0.00 35.02 4.75
786 864 2.107141 CGATCGGTGGAAGGAGCC 59.893 66.667 7.38 0.00 0.00 4.70
1323 1428 4.394712 CCGCCCTTCTGCCGAGTT 62.395 66.667 0.00 0.00 0.00 3.01
1340 1445 4.500116 GCTCCTCGTCTCCACCGC 62.500 72.222 0.00 0.00 0.00 5.68
1377 1482 1.875813 GCAGATCGAGCACTCCACG 60.876 63.158 2.38 0.00 0.00 4.94
1593 1698 0.882042 AGCACGTTGTCTTCTGGCTG 60.882 55.000 0.00 0.00 0.00 4.85
1691 1816 4.584688 GCCATTTGCCTCTGTTGC 57.415 55.556 0.00 0.00 0.00 4.17
1926 2053 7.872881 ACGGTACTACAATACTCATGACATAG 58.127 38.462 0.00 0.00 0.00 2.23
1928 2055 6.320418 TGACGGTACTACAATACTCATGACAT 59.680 38.462 0.00 0.00 0.00 3.06
1931 2058 5.884232 AGTGACGGTACTACAATACTCATGA 59.116 40.000 0.00 0.00 0.00 3.07
1980 2107 1.112315 AGATGCCACTAGCTCGGGAG 61.112 60.000 0.00 0.00 44.23 4.30
1981 2108 1.075970 AGATGCCACTAGCTCGGGA 60.076 57.895 0.00 0.00 44.23 5.14
1991 2118 1.065701 ACGTACAGATCGAGATGCCAC 59.934 52.381 0.00 0.00 0.00 5.01
2004 2131 5.116680 GTCAGTGCTGTTAAACTACGTACAG 59.883 44.000 9.11 9.11 40.65 2.74
2058 2185 2.533916 TGGTGACAAGCAGAGAGATCT 58.466 47.619 0.00 0.00 37.44 2.75
2127 2254 6.810911 AGTCATTAGATAGGCACACACTTAG 58.189 40.000 0.00 0.00 0.00 2.18
2160 2287 0.576798 GCAACCTTTTCGCAAAGCAC 59.423 50.000 1.67 0.00 38.53 4.40
2161 2288 0.869454 CGCAACCTTTTCGCAAAGCA 60.869 50.000 1.67 0.00 38.53 3.91
2239 2367 1.753956 GCACTAATTAATTGCGCCGG 58.246 50.000 11.05 0.00 0.00 6.13
2246 2374 5.760253 CAGTCCTCCATCGCACTAATTAATT 59.240 40.000 5.89 5.89 0.00 1.40
2247 2375 5.070446 TCAGTCCTCCATCGCACTAATTAAT 59.930 40.000 0.00 0.00 0.00 1.40
2248 2376 4.404394 TCAGTCCTCCATCGCACTAATTAA 59.596 41.667 0.00 0.00 0.00 1.40
2249 2377 3.958147 TCAGTCCTCCATCGCACTAATTA 59.042 43.478 0.00 0.00 0.00 1.40
2268 2400 6.562270 CGCACTAATTTTAGTCGCCTAATCAG 60.562 42.308 13.97 0.00 41.82 2.90
2378 2515 3.254166 CCAAACAGCATTGCTCTTGTAGT 59.746 43.478 20.58 9.33 36.40 2.73
2379 2516 3.366679 CCCAAACAGCATTGCTCTTGTAG 60.367 47.826 20.58 12.44 36.40 2.74
2380 2517 2.557924 CCCAAACAGCATTGCTCTTGTA 59.442 45.455 20.58 0.00 36.40 2.41
2381 2518 1.342174 CCCAAACAGCATTGCTCTTGT 59.658 47.619 20.58 11.19 36.40 3.16
2382 2519 1.342174 ACCCAAACAGCATTGCTCTTG 59.658 47.619 8.54 14.34 36.40 3.02
2464 2607 2.599848 CGCCGCTCGAAAAATATCCAAG 60.600 50.000 0.00 0.00 41.67 3.61
2465 2608 1.329292 CGCCGCTCGAAAAATATCCAA 59.671 47.619 0.00 0.00 41.67 3.53
2471 2615 0.109319 AATTGCGCCGCTCGAAAAAT 60.109 45.000 11.67 0.00 39.54 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.