>input_sequence_74992
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----------------------------------------------------------------ATGGCCGCGCAGGAGG
GCGCCGCGGGGACGGCGAACCAGGTGTCGAGGGTGCGGTACGGCGACGTCGACGACAGCAACTTCGCGCTGCGCGGCCGC
GCCGTGCCGCTGCTGGCCGGCCTGCTCGCGCTCCTCGTCGCCTTCGTCGCCGTCTGCCTCTACCTCCGCTGGGCGTGCGG
CCGGCGCCGCGCCCGCCGCGATGCCGGCCGCGAGGCCTCGTCCTCGTCCGCCGCGGCGTCGCCCGTGCCCGGCCTCGACG
CCGACGCCATCAATGGGCTGCCCGTCACGCTCTACAGCCCGCCCGCCTCCTCGCCGGCGCGCTCCCCAACTCGGCAGAAG
GGCGGCGGTGGAGACGAGGAGCAGGCGGCGGCGGCGGCGGCCGTGGAGTGCTCGATCTGCATCAGCGCGCTGGTGGCCGG
GGACAAGGTGAAGGCGCTCCCTCCCTGCGGCCACTGCTTCCACCCGGAGTGCGTCGACGCCTGGCTCCGCTCCCAGCCCA
GCTGCCCGCTCTGCCGCACCCTCCTCCTCCCCGCCCCCGCCGTCGCCAAACCTGTCGACGTTGTCAACGGAGGCCACCCG
CCGCCGGTGTGA--------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G296300
TATCCCGACCCATCGCCATTTCATAATCTTGCCACCAACAAGAAAAAAAGAAGATCAATGTGAGAGCGGAGAAACCCTAG
----GAGCACGTCGAAGACCGCGGGCAACCACGAAGAGAG--------GAGCCTGGATAAGCGGGCAGAGAAAAGGTTGC
AGTCTTGTAGATTCTCTCGAGTCACCTGGGCGGGGGCAGCTCGCCCACGAACCCTCGAAACAGATGGCCACC--------
AGCCGGCAGGAGTAGGACGGCCCATT-CACCCTTGGCAATGTACGTAATTGGCACAAATTCCAGCCATAAAATCGCCAAA
AAAAGAGAGAAATAATTGCCAGTCAAAGATCCCCGTAGAAAACATTCGCCGCTGAAAAATCGCAAGCACTGTGCAGTGCA
AAACCATTGGTCTGAATGCATGCGCGCAGCTCGCTCGCTCGCTACATACAAGTCGTCCATCCCATCCCCCGTGGATCGTG
ACCAGCGATCGGAACCCGAGAATATCGCACC--------------------------------CCCGAGTCCACAGTCCA
CGGCGACAGAACAGTGCGGCATGCCGCCGTACGTGCCGGCTCGATCCAGTCACGCCCAAGTTGGCAGTTGCCCATCAG--
-----CTCGCGGCTAGCTTCCGAGTTCCGCCTCTGCCCCACCGGCCGGAGCCATTTTTCCGAGCTTAAAAGGGACGGCCG
AGGACTTTGAATTTTAA-AAACCACGCTC----CCCATCCAGCAGCTCACTCACTCTCCGGTCGATCGCTCTCTCGCCAG
GCCGAGCCACACCGCCACTTGCCCCGATATTTCCTCGC------------TTGCTTGCTCGTTGGCTCCTTCCACCGATC
GCCTGCGCCACAAGCCGGCC----GGCAGCGCGCTCGGTCTCCCATGCGCTGCCTTTGACCACCGCAGCTCCACGAGTCC
GCACCCCGCACATGGCGTGAGAGCGTGGGCTAGCT-----------GATAAGTCCAAGAAGTCCAAGCTCGTGCACGTCG
AGGCT----T--------GCGTGCGTGCAGAGTTCGTGAAGGGAAGGGAAGGAAGAAACCTACTATGGCCGCGCAGGAGG
GCGCCGCGGGGACGGCGAACCAGGTGTCGAGGGTGCGGTACGGCGACGTCGACGACAGCAACTTCGCGCTGCGCGGCCGC
GCCGTGCCGCTGCTGGCCGGCCTGCTCGCGCTCCTCGTCGCCTTCGTCGCCGTCTGCCTCTACCTCCGCTGGGCGTGCGG
CCGGCGCCGCGCCCGCCGCGATGCCGGCCGCGAGGCCTCGTCCTCGTCCGCCGCGGCGTCGCCCGTGCCCGGCCTCGACG
CCGACGCCATCAATGGGCTGCCCGTCACGCTCTACAGCCCGCCCGCCTCCTCGCCGGCGCGCTCCCCAACTCGGCAGAAG
GGCGGCGGTGGAGACGAGGAGCAGGCGGCGGCGGCGGCGGCCGTGGAGTGCTCGATCTGCATCAGCGCGCTGGTGGCCGG
GGACAAGGTGAAGGCGCTCCCTCCCTGCGGCCACTGCTTCCACCCGGAGTGCGTCGACGCCTGGCTCCGCTCCCAGCCCA
GCTGCCCGCTCTGCCGCACCCTCCTCCTCCCCGCCCCCGCCGTCGCCAAACCTGTCGACGTTGTCAACGGAGGCCACCCG
CCGCCGGTGTGACTCGTCAGCCAGAAGACAACGTGCTCGCA--------CGCCAACTCATCGAAGCATGACAAGCAGGCC
CCACCTGTAAGCCACTTATTGCTAT------------AAAGCCCGTCCCGGTTTAGCAACAGAGGCAAATGGCCAATGTG
GCTAGGTAACTGGCCCCGGCGA-CGGCGAGGTGCGTCATCGCCGGCCGGAAAGGCAGCGCCAGCTTTGCCATGGCACGAC
GGGAGCCGTTCTTTCGCAGGCCGGCCGGCGC-CGTGGGGTCGCGTCGTCTCTCCGGCCACTTTTCTACCTTAAATTTTCT
GTTCAAGCCTCCAAAGGGAAGGACAGCGGTGTAGGCTGTACATTAAAATTATCTATGTCATGAGTATTGTAGTACCGTCA
CTGCGTACGCGGTGGCAGCTCAGTGGCTCCCGAGCTAGTGGCATCTCGATCTGTACGTAGTTTAACAGCACTGACACGGG
CAGCTCACCCTTAATTAAGTCCCAAGATCTCTCTGCTTGTCACCATCCTGATCGCGTTTGCGTATAGTAATCTGCACTTT
TGGGGCAGCTCCCCTAAGTGTGTGCCTATCTAATGACTAATGGAGCGT-GCTTTGCGAAAAGGTTGCGTCTCCGAGCAAC
ACCTCACCGTTTCTTCCTTCAACCGTCCCCTCTGGATCTCTTTCGACCGGCGCAATTAATTAGTGC----GATGGAGGAC
TGATTAGGCGACTAAAATTAGTGCGATGCAGGATCAGGATCAGGACGCCCGTCTTCATCTTGCTATGCTA-----AGCTA
GCTGTGCTTCTTACTCCATCGCACTACGTAGTGTACTAC------AAGAGCAATGCTGTTTGGGTTGGGTTCGATTGATT
GTTGGGGTTATCATGAACGCCAGTGGCAGCGCCACGGCTAGAGCACCT-TGGATATTTTTCGAGCGGCGCAATTAGTGCG
CTGGAAGATTAGCTAGGAAACAACCGGACGTCTTAACATGATACGCAATGCTATATTAGTTTGCCCACCGTGCTTAATGC
ACCACTAGTAC
>chr1A_39
CAAGAG--------------------------------------AAAAGGAAGATCAATGTGAGAGTGGAGAAACCCTAG
----GAGCGCGTCGAG-----------ACCACGAAGAGAG--------GAGCATGGATAAGCGG-CAAAGGAAAGGTTGT
AGTCTTGTAGATTCTCGCGAGTCACCTGGGCGGGGGCAGCTCGCCGACGAACCCTCGAAGCAGATGGCCACTAGCCGTCT
AGCCGGCAGGAGTACGACGGCCAATT-CACCCTTGGCGATG----TAACTGTCACAAGTTCCAGCCACAAATCCGCC---
AAGAAAAATAAACTATCGCCAGTCAAAGATCCCCGTAG--------------------------------GTGCAGTGCA
AAACCATTGGTCTGAATGCATGCGCGCAGCTCGCTTGC--------TACAAGTCGT-----CCATCCCCTGTGGATCGTG
ACCAGCGATCCGAACCGGAGAATATTACACCTCCCTGCAAATTAAGAAGAAGAATATCGCATCGCCG-------AGTCCA
CGGCGACAGCACAGTGCGGCATGCCGCCGTGCGTGCCGGCTCGATCCAGTCACGCCCAAGTTGGCAGTTGCCCATCAGCT
CGGGCCTCGCGGCTAGCTTCCG--TTCCGCCTGTGCCCCACCGGCCGGAGCCATTTTTCCAAGCTTAAAAGGGACGGCCG
AGGACTTTGAATTTTAA-AA-CCACGCTC----CCCGTCCAGCAGCTCGCTCACTCTCCGGTCGATCGCTCTCTCGCCAG
GCCGAGCCACACCGCCACTTGCCACGATATTTCCTCGC------------TCGCCC--------GCTCCTTCCACCGATC
GCCTGCACCACAAGCCGGCCGGCCGGCAGCGCGCTCGGTCTCCCATGCGCTGCCTTTGACCACCAGAGCTCCACAAGTCC
GCACCCCGCACATGGCGTGAGAGGGTGGGCTAGCTGCTAC-TAGCTGATAAGTCCAAGAAGTCCAAGCTCGTGCACGTCG
AGGCT----TGCGTGCGTGCGTGCCTGCAGAGTTCGCGGGGAGAAGAAGGAGAGA--ACCG---ATGGCCGCGCAGGAGG
GCGCCGCGGGGACGACGAACCAGGTGGAGAGGGTGCGGTACGGCGACGTCGACGACAGCAACTTCGCGCTGCGCGGCCGC
GCGGTGCCGCTGCTGGCCGGCCTGCTCGCCCTCCTCGTCGCCTTCGTCGCCGTCTGCCTCTACCTCCGCTGGGCGTGCGG
CCGCCGCCGCGCCCGCCGCGACGCCGACCGCGATGCCTCGTCCTCGTCCGCCGCGGCGTCGCCCGTGCCCGGCCTCGACG
CCGACGCCATCAATGGGCTGCTCGTCACGCTCTACAGCCCGCCCGCCTCCTCGCCGGCGCGCTCCCCTTCTCGGCACAAG
GGCGACGGTGGAGACGAGGAGGAGCAGGC------GGCGGCTGTGGAGTGCTCGATCTGCATCAGCGCGCTGGTGGCCGG
GGACAAGGTGAAGGCGCTCCCTCCCTGCGGCCACTGCTTCCACCCGGAGTGCGTCGACGCCTGGCTCCGCTCCCAGCCCA
GCTGCCCGCTCTGCCGCACGCTCCTCCTCCCCGCCGCCGCCGTCACCAAGCCGGTCGACGTTGTCAACGGAGGCGACCCG
CCGCCGGTGTGACTCGTGAGCCAGAAGACAACGTGCTCGCA--------CGCCAACTCACCGAAGCATGACAAGGAGGCC
CCACCTGTAAGCCACTTACTGCTATCTTCACCGCAAGAAAGCCCGTCCTGGTTTAACAACAGAGCCAAATGACCAATGTG
GCTAGCTAACTGGCCCCGGCCCCCGGCGAGGTGCGTCATCGCCGGCCGGAAAGGCAGGGCCAGCTGTGCCATGGCACCAC
GGGAGCCGTTCTTTCGCAGGCCGGCCGGCCGGCGTGGGGTCGCGTCGTCTCTCCGGCCACTTTTCTACCTTAAATTTTCC
GTTCAAGCCCCCAAAGGGAAGGACAGCGGTGTAGGCTGTACATTAAACTATCTATCGCCAAGAGTATTGTAGCACCGTCA
CTGCGTACGCGGTGGCAGCTCAGTGGTGCCCGGGCTAATGGCATCTCGATGTGTACGTGGTTTAACAGCACTGATCGCCT
TTAAT---------TTAAGTCCCAGGATCTATCTGCTTGTCACCATCCTGATCGCGTTTGCGTATAGTAATCTGCGCTTT
TGGGGCAGCTCCCGTAAGTGTGCGTGTATCTAATGACTAATGGAGCCGCGCTTTGCGAAAAGGTTGCGTCCCCGAGCAAC
ACCTCACCGTTTCTTCCTTCAACCGTCCCCTCTGGATCTCTTTCGAGCGGCGC----AATTAGTGC----GATGGAGGAT
TGAGTAGGCGACTAAAATTAGTGCGATGCAGGATCAGGATCAGGACGCCCGTCTTCGTCTG-----GCTA-----GGCTA
GCTGTGCTTCTTGCTCCATCGCACTACGTGTAGTGTATGCAT-----GAGCAATGCTGTTTGGGTTGGGTTCGATTGATT
GTTGGCGTTATCATGAACACCAGTGGCAGCGCCACGGCTGGAGCACTCTTGGATCTTTCTGGAGCGGCGCAATTAGTGCG
CTGGAAGATTAGCTAGGAAACAACCGGACGTCTTAACATGGTACGCAATGCTATATTAGTTTG----CCGTGCTTAATGC
ACCAC------
>chr1D_52
---------------------------------------------------AGATCAATGTGAGAGTGGAGAAACCCTAG
CTAGGAGCGCGTCGAAGACCGCC-GCAACCACGAAGAGAGAGGGAGAGGAGCATGGATAGGC-GGCAGAGAAAAGGTTGT
GGATTTGTAGATTCTCTCGAGTCACCTGAGCGGGGGCAGCTCGCCGACGAACCCTCGAAGCAGATGGCCACC--------
AGCCGGCAGGAGCAGGACGGCCAATTTCACCCTTGGCGATG----TAATTGTCACAAGCTCCAGCCACAAATTCGCCAAA
AAAAAAAAGAAATAATTGCCAGTCAAAGATCCCCGTAGAAAATATTCGCCGCTGAAAAATCGCAAGCACTGTGCAGTTCA
AAACCATTGGTCTGAATGCATGCGCGGAGCTCCGTT--------------AGTCGTCGATCCCATCCCCCGTGGATCGTG
ACCAGCGATCGGAACCGGAGAATATCGCGCT--------------------------------CCCG-------AGTCCA
CGGCGGCAGCACAGTGCGGCATGCCTCCGTGCCGGCCCG----------------------------------ATCAG--
-----CTCGCGGCTAGCTTCCG--TTCCACCTGTGCCCCACCGGCAGGAGCCATTTTTCCAAGCTTAAAAGGGACGGCCG
AGGACTTTGAATTTTTA-AAACCACGCTC----CACATCTCGCAGCTCACTCGCTCTCCGGTCGATCGCTCTCTCGCCAG
GCCGAGCCACACCGCCACTTGCTCCGATATTTCCTCGC----------------CC--------GCTCCTCCGGTCGATC
GCCTGCACCACAAGCCGGCC----GGCAGCGCGCTCGGTCTCCCATGCGCCGCCTTTGACTACCGCAGCTCCACGAGTCC
GCACCCCGCACATGGCGTGAGAGCGTGGT----------C-TAGCTGATAAGTCCAAGAAGTCCAAGCTCGTGCACGTCG
AGGCT----T--------GCGTGCGTGCGGAGTTCGCGGAGGGAGAGGAAGGAAGCGACCG---ATGGCCGCGCAGGAGG
GCGCCGCGGGGACGGCGAACCAGGTGGCGAGGGTGCGGTACGGCGACGTCGACGACAGCAACTTCGCGCTGCGCGGCCGC
GCCGTGCCGCTGCTGGCCGGCCTGCTCGCCCTCCTCGTCGCCTTCGTCGCCGTCTGCCTCTACCTCCGCTGGGCGTGCGG
CCGCCGCCGCGCCCGCCGCGACGCCGACCGCGAGGCCTCGTCCTCGTCCGCCGCGGCCTCGCCCGTGCCCGGCCTCGACG
CCGACGCCATCAATGGGCTGCCCGTCACGCTCTACAGCCCGCCCGCCTCCTCGCCGGCGCGCTCCCCTTCTCGGCAGAAG
GGCGACGGTGGAGACGAGGAGCAGGCGGC------GGCGGCTGTGGAGTGCTCGATCTGCATCAGCGCGCTGGTGCCCGG
GGACAAGGTGAAGGCGCTCCCTCCCTGCGGCCACTGCTTCCACCCGGAGTGCGTCGACGCCTGGCTCCGCTCCCAGCCCA
GCTGCCCGCTCTGCCGCACCCTCCTCCTCCCCGCCGCCGCCGTCGCCAAACGTGTCGACGTTGTCAACGGAGGCCAC---
CCGCCGGTGTGACTCGTGAGCCAGAAGTCAACGTGCTCGCG--------CGCCAACTCATCGAAGCATGACAAGCAGGCC
CCACCTGTAAGCCACTTACTGCTATCTTGACGGCAAGAAAGCCTGTCCCGGTTTAACGACAGAACCAAATGACCAATGTG
GCTAGCTAACTGGCCCCGGCGA----------------------------------------------------------
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>chr4B_72
-----------------------------------------------------------------------AAACCCTAG
----GAGCACGTCCAAGACCGCCGGCAACCACGAAGAGAGACGGAGAGGGGCATGGATAAGC-GGCCGAGAAGAGGTTGT
AATCTTGTAGATTCTCCCGAGTCACCTGGGCGGGGGCAACTCGCCGACGAACCCTCGAAGCAGATGGCCACC--------
AGCCCGCAGGAGTAGGACGGCCAATT-CACCATCGGCAATG----TAATTGTCACAACTTCCAGCCACAAATTCGCCAAA
AAAG----GAAATAATTGCCAGTCAAAGATCCCCGTAGAAAATATTCGCCGCTGAAAAATCGCAAGCACTGTGCAGTTCA
AAACCATTGGTCTGAATGCATGCGCGCAGCTCGCCTGC--------CACAAGTCGTCCATCCCTTCCCCCGTGGATCGTG
ACCAGCGATCCGAACGGGAGAATATTACACCTCCCGGCAAATTAAGAAGAAGAATATTGCACCCCCG-------AGTCCA
CGGCGACAGCACAGTGCGGCATGCCGCCGTGCGTGCCGGCTCGATCCAGTCACGCCCAAGTTGGCAGTTGCCCATCAGCT
CGCGCCTCGCGGCTAGCTTCCGG-------CTGTGCCCCACCGGCCGGAGCCATTTTTCCAAGCTTAAAAGGGACGGCCG
AGGACTTTGAAATTTTAGAAACCACGCTCGTCCCCCATCCAGCAGCTCACTCGCTCTCCGGTCGATCGCTCTCTCGCCAG
GCCGAGCCACACCGCCACTTGCCACGATATTTCCTCGCTCGCTTGCTTGCTCGCCC--------GCTCCTTCGACCGATC
GCCTGCACCACAAGCTGGCCGGCCGGCAGCGCGCTCGGTCTCCCATGCGCTGCCTTTGACTACCGCAGCTCCACGAGTCC
GCACCCCGCACATGGCGTGAGAGCGTGGGCTAGCTGCTGCGTAGCTGATTAGTCCAAGAAGTCCAAGCTCGTGCACGTTG
AAGCTTGCGT--------GCGTGCGTGCAGAGTTCGTGAAGGGAGAGGAAGGAAGAAACCTACTATGGCCGCGCAGGAGG
GCGCCGCGGGGACGGCGAACCAGGTGGCGAGGGTGCGGTACGGCGACGTCGACGACAGCAACTTCATGCTGCGCGGCCGC
GCCGTGCCGCTGCTGGCCGGCCTGCTCGCGCTCCTCGTCGCCTTCGTCGCCGTCTGCCTCTACCTGCGCTGGGCGTGCGG
CCGCCGCCGCGCCCGCCGCGACGCCGACCGCGAGGCCTCGTCCTCGTCCGCCGCGGCGTCGCCCGTGCCCGGCCTCGACG
CCGACGCCATCAATGGGCTGCCCGTCACGCTCTACAGCCCGCCCGCCTCCTCGCCGGTGCGCTCCCCTTCTCGGCAGAAG
GGCGACGGCGGAGACGAGGAGCAGGCGGC------G---------GAGTGCTCGATCTGCATCAGCGCGCTGGTGGCCGG
GGACAAAGTGAAGGCGCTCCCTCCCTGCGGCCACTGCTTCCACCCGGAGTGCGTCGACGCCTGGCTCCGCTCCCAGCCCA
GCTGCCCGCTCTGCCGCACCCTCCTCCTCCCCGCCGCCGCCGTCGCCAAGCCGGTCGACGTTGTCAACGGAGGCGACCCG
CCGCCGGTGTGACTCGTGAGCCAGAAGACAACGTGCTCGCACGCCAAGTCGCCAACTCACCGAAGCATGACAAGCAGGCC
CCACCTGTAAGCCACTTACTGCTACCTTGACCGCAAGAAAGCCCGTCCCGGTTTAACAACAGAGCCAAATGAGCAATGTG
GCTACCGTACCTGT-------CCCCGCGAGACGCGTCATCGCCGGCCGGAAAGGCAGCGCCAGCTCTGCCATGGCACGAC
GGGAGCCGTTCTTTCGCAGGCCGGCC----GGCGTGGGGTCGCGTCATCTCTCCGGCCACTTTTCTACCTTAAATTTTCT
GTTCAAGCCTCCAAAGGGAAGGACAGTGGTGTAGGCTGTACATTAAAATTATTTGTGCCATGAGTATTGTAGTGCCGTCA
CTGCGTACGCGGTGGCAGCTCAGTGGTGCCCGAGCTAATGGCATCTCGATGTGTACGTAGTTTATCAGCACTGACACGGG
CAGCTCACCCTTAATTAAGTCCCGGGATCTCTCTGCTTGTCACCATCCTGATCGCGTTTGCGTATAGTAATCTGCACTTT
TGGGGCAGCTCCCGTAAGTGTGTGCCTATCTAATGACTAATGGAGCCGCGCTTTGCGAAAAGGTTGCGTCTCCGGACAAC
ACCTCACCGTTTCTTCCTTCAACCGTCCCCTCTGGATCTCTTTCGAGCGGCGC----AATTAGTGCGATGGATGGAGGAT
TGATTAGGCGACTAAAATTAGTACGATGGAGGATCCGGATCAGGACGTCCGTCTTCGTCTG-----GCTAAGCTAAGCTA
GCTGTGCTTCTTACTCCATCGCACTACGTAGTGTGTACTACATGGAACAGCAATGCTGTTTGGG-TGGGTTCGATTGATT
GTTGGGGTTATCATGAACACCAGTGGCAGCGCCACGGCTAGAGCACTC-TGGATCTTTTTCGAGCGGCGCAATTAGTGCG
CTGGAAGATTAGCTAGGAAACAACCGGACGTCTTAACATGATACGCAATGCTATATTAGTTTG----CCGTGCTTAATGC
ACCACTACTAC
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----------------S-------------
----------------------S-----------------------------S--------------------------S
---------------------------------------------S-------------S--------------------
----------------------S------------------SSSS------S-----S---------S---S--------
----S-S-----------------------------------S-------------------------------------
-----------------------------------S--SSSSSSSS----------------------------------
----------------S--------------------------------------------------SSSSSSS------
---------S--------------------S-------------------------------------------------
----------------------SS--------S---------------------------S-------------------
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---------------------------------------------------S--SSSSSSSSSS----------------
------S-------------------------------------------------------------------------
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--------------------------S-----------------------------------------------------
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---S-----------------S----S-----------------------------------------------------
-------------------------------------------------------------------SS-----------
----S------------------------SSSSSS------S--------------------------------------
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-----------------------------------S--------------------------------------------
-----------------S--------------------------------------------------------------
------------------S------------------------------------S--------S------S--------
-----S-----------------------------------------------------------S--------------
-----------------------------SS-------------------------------------------------
----------------------------------------------------S-S--S----------------------
--------------------------SS---------S------------S-----------------------------
------------------------S-------------------------------------------------------
-------------S--------------------------------SS--------------------------------
----------------------------------------------S------SSSS----------------------S
--------------------------------------------------------S---SSSSSS--------------
----------------------------------SSSSS-----------------------------------------
------------------S---------------------------SS------S-------------------------
---------------------------------------------------------------SSSS-------------
-------S---
>forward_549
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-------------------------------------------------GAGAATATCGCACCCCCGAG-----------
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>reverse_2615
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------------------------------------------------------ATTTTTCGAGCGGCGCAATT------
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