Multiple sequence alignment - TraesCS1D01G292900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G292900 chr1D 100.000 2867 0 0 1 2867 392027957 392025091 0.000000e+00 5295.0
1 TraesCS1D01G292900 chr1D 87.730 163 17 3 510 669 435937501 435937663 1.360000e-43 187.0
2 TraesCS1D01G292900 chr1D 85.475 179 18 8 495 669 326255518 326255692 2.270000e-41 180.0
3 TraesCS1D01G292900 chr1B 87.767 2248 140 47 668 2867 530609841 530612001 0.000000e+00 2503.0
4 TraesCS1D01G292900 chr1B 88.750 240 22 3 2632 2867 530612048 530612286 3.610000e-74 289.0
5 TraesCS1D01G292900 chr1A 95.689 1067 34 5 873 1928 493266562 493267627 0.000000e+00 1705.0
6 TraesCS1D01G292900 chr1A 86.854 213 24 4 2341 2553 493268881 493269089 4.780000e-58 235.0
7 TraesCS1D01G292900 chr1A 82.727 110 5 6 790 885 493266437 493266546 5.090000e-13 86.1
8 TraesCS1D01G292900 chr4A 88.235 170 17 3 503 669 150653482 150653313 1.740000e-47 200.0
9 TraesCS1D01G292900 chr6A 88.889 162 15 3 510 669 504487228 504487068 2.250000e-46 196.0
10 TraesCS1D01G292900 chr7B 88.024 167 17 3 510 673 431659259 431659093 8.110000e-46 195.0
11 TraesCS1D01G292900 chr7B 87.730 163 18 2 510 670 460995606 460995768 3.770000e-44 189.0
12 TraesCS1D01G292900 chr6D 87.805 164 18 2 508 669 48457971 48458134 1.050000e-44 191.0
13 TraesCS1D01G292900 chr7A 87.805 164 16 4 508 669 253801676 253801837 3.770000e-44 189.0
14 TraesCS1D01G292900 chr5A 87.425 167 18 3 510 674 653299440 653299605 3.770000e-44 189.0
15 TraesCS1D01G292900 chr2B 100.000 28 0 0 2529 2556 174928591 174928564 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G292900 chr1D 392025091 392027957 2866 True 5295.000000 5295 100.000000 1 2867 1 chr1D.!!$R1 2866
1 TraesCS1D01G292900 chr1B 530609841 530612286 2445 False 1396.000000 2503 88.258500 668 2867 2 chr1B.!!$F1 2199
2 TraesCS1D01G292900 chr1A 493266437 493269089 2652 False 675.366667 1705 88.423333 790 2553 3 chr1A.!!$F1 1763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 699 0.179119 GCAATGCATTGAGAGTGCCC 60.179 55.0 37.36 16.77 41.83 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 3240 0.028902 GCCGTTGCTCTTGACGTTTT 59.971 50.0 0.0 0.0 37.56 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.830975 AATATAGCAAAAATACCCAATGAAACC 57.169 29.630 0.00 0.00 0.00 3.27
59 60 5.823861 AGCAAAAATACCCAATGAAACCT 57.176 34.783 0.00 0.00 0.00 3.50
60 61 6.926630 AGCAAAAATACCCAATGAAACCTA 57.073 33.333 0.00 0.00 0.00 3.08
61 62 6.935167 AGCAAAAATACCCAATGAAACCTAG 58.065 36.000 0.00 0.00 0.00 3.02
62 63 6.070824 AGCAAAAATACCCAATGAAACCTAGG 60.071 38.462 7.41 7.41 0.00 3.02
63 64 6.295632 GCAAAAATACCCAATGAAACCTAGGT 60.296 38.462 9.21 9.21 0.00 3.08
64 65 7.320399 CAAAAATACCCAATGAAACCTAGGTC 58.680 38.462 16.64 4.00 0.00 3.85
65 66 6.402981 AAATACCCAATGAAACCTAGGTCT 57.597 37.500 16.64 0.00 0.00 3.85
66 67 7.519347 AAATACCCAATGAAACCTAGGTCTA 57.481 36.000 16.64 4.96 0.00 2.59
67 68 6.749036 ATACCCAATGAAACCTAGGTCTAG 57.251 41.667 16.64 2.47 0.00 2.43
75 76 3.300032 CCTAGGTCTAGGCACACCA 57.700 57.895 10.73 0.00 45.36 4.17
76 77 1.794714 CCTAGGTCTAGGCACACCAT 58.205 55.000 10.73 0.00 45.36 3.55
77 78 2.958818 CCTAGGTCTAGGCACACCATA 58.041 52.381 10.73 0.00 45.36 2.74
78 79 3.305720 CCTAGGTCTAGGCACACCATAA 58.694 50.000 10.73 0.00 45.36 1.90
79 80 3.904339 CCTAGGTCTAGGCACACCATAAT 59.096 47.826 10.73 0.00 45.36 1.28
80 81 4.348168 CCTAGGTCTAGGCACACCATAATT 59.652 45.833 10.73 0.00 45.36 1.40
81 82 4.156455 AGGTCTAGGCACACCATAATTG 57.844 45.455 0.00 0.00 39.06 2.32
82 83 3.780294 AGGTCTAGGCACACCATAATTGA 59.220 43.478 0.00 0.00 39.06 2.57
83 84 4.227300 AGGTCTAGGCACACCATAATTGAA 59.773 41.667 0.00 0.00 39.06 2.69
84 85 4.335594 GGTCTAGGCACACCATAATTGAAC 59.664 45.833 0.00 0.00 39.06 3.18
85 86 4.941263 GTCTAGGCACACCATAATTGAACA 59.059 41.667 0.00 0.00 39.06 3.18
86 87 5.414454 GTCTAGGCACACCATAATTGAACAA 59.586 40.000 0.00 0.00 39.06 2.83
87 88 6.007076 TCTAGGCACACCATAATTGAACAAA 58.993 36.000 0.00 0.00 39.06 2.83
88 89 5.543507 AGGCACACCATAATTGAACAAAA 57.456 34.783 0.00 0.00 39.06 2.44
89 90 6.112927 AGGCACACCATAATTGAACAAAAT 57.887 33.333 0.00 0.00 39.06 1.82
90 91 7.238486 AGGCACACCATAATTGAACAAAATA 57.762 32.000 0.00 0.00 39.06 1.40
91 92 7.850193 AGGCACACCATAATTGAACAAAATAT 58.150 30.769 0.00 0.00 39.06 1.28
92 93 8.320617 AGGCACACCATAATTGAACAAAATATT 58.679 29.630 0.00 0.00 39.06 1.28
93 94 8.945057 GGCACACCATAATTGAACAAAATATTT 58.055 29.630 0.00 0.00 35.26 1.40
123 124 9.558396 AAAAATAGAAAATGTCAAGCAATTCCA 57.442 25.926 0.00 0.00 31.38 3.53
124 125 9.558396 AAAATAGAAAATGTCAAGCAATTCCAA 57.442 25.926 0.00 0.00 31.38 3.53
125 126 9.558396 AAATAGAAAATGTCAAGCAATTCCAAA 57.442 25.926 0.00 0.00 31.38 3.28
126 127 9.558396 AATAGAAAATGTCAAGCAATTCCAAAA 57.442 25.926 0.00 0.00 31.38 2.44
127 128 7.250445 AGAAAATGTCAAGCAATTCCAAAAC 57.750 32.000 0.00 0.00 31.38 2.43
128 129 6.822676 AGAAAATGTCAAGCAATTCCAAAACA 59.177 30.769 0.00 0.00 31.38 2.83
129 130 7.499895 AGAAAATGTCAAGCAATTCCAAAACAT 59.500 29.630 0.00 0.00 31.38 2.71
130 131 7.571080 AAATGTCAAGCAATTCCAAAACATT 57.429 28.000 0.00 0.00 37.62 2.71
131 132 7.571080 AATGTCAAGCAATTCCAAAACATTT 57.429 28.000 0.00 0.00 33.58 2.32
132 133 6.998968 TGTCAAGCAATTCCAAAACATTTT 57.001 29.167 0.00 0.00 0.00 1.82
133 134 6.783162 TGTCAAGCAATTCCAAAACATTTTG 58.217 32.000 9.66 9.66 45.34 2.44
134 135 6.373774 TGTCAAGCAATTCCAAAACATTTTGT 59.626 30.769 14.34 0.00 44.52 2.83
135 136 7.550551 TGTCAAGCAATTCCAAAACATTTTGTA 59.449 29.630 14.34 4.54 44.52 2.41
136 137 8.394121 GTCAAGCAATTCCAAAACATTTTGTAA 58.606 29.630 14.34 6.89 44.52 2.41
137 138 8.950210 TCAAGCAATTCCAAAACATTTTGTAAA 58.050 25.926 14.34 9.45 44.52 2.01
138 139 9.224058 CAAGCAATTCCAAAACATTTTGTAAAG 57.776 29.630 14.34 5.51 44.52 1.85
139 140 8.729805 AGCAATTCCAAAACATTTTGTAAAGA 57.270 26.923 14.34 3.76 44.52 2.52
140 141 9.171877 AGCAATTCCAAAACATTTTGTAAAGAA 57.828 25.926 14.34 10.95 44.52 2.52
141 142 9.949174 GCAATTCCAAAACATTTTGTAAAGAAT 57.051 25.926 14.34 12.33 44.52 2.40
169 170 9.911138 TGATATAGTTTTGTACTCACGTGTAAA 57.089 29.630 16.51 7.81 38.33 2.01
175 176 9.068008 AGTTTTGTACTCACGTGTAAAATTTTG 57.932 29.630 16.51 0.00 28.23 2.44
176 177 7.439204 TTTGTACTCACGTGTAAAATTTTGC 57.561 32.000 16.51 12.64 0.00 3.68
177 178 5.199000 TGTACTCACGTGTAAAATTTTGCG 58.801 37.500 16.51 15.69 0.00 4.85
178 179 4.539509 ACTCACGTGTAAAATTTTGCGA 57.460 36.364 16.51 10.83 0.00 5.10
179 180 4.911053 ACTCACGTGTAAAATTTTGCGAA 58.089 34.783 16.51 13.06 0.00 4.70
180 181 4.967575 ACTCACGTGTAAAATTTTGCGAAG 59.032 37.500 16.51 19.56 0.00 3.79
181 182 5.158101 TCACGTGTAAAATTTTGCGAAGA 57.842 34.783 16.51 17.39 0.00 2.87
182 183 5.570344 TCACGTGTAAAATTTTGCGAAGAA 58.430 33.333 16.51 5.63 0.00 2.52
183 184 6.028368 TCACGTGTAAAATTTTGCGAAGAAA 58.972 32.000 16.51 2.13 0.00 2.52
184 185 6.693545 TCACGTGTAAAATTTTGCGAAGAAAT 59.306 30.769 16.51 5.03 0.00 2.17
185 186 6.780496 CACGTGTAAAATTTTGCGAAGAAATG 59.220 34.615 22.01 10.21 0.00 2.32
186 187 6.693545 ACGTGTAAAATTTTGCGAAGAAATGA 59.306 30.769 22.01 0.39 0.00 2.57
187 188 6.995633 CGTGTAAAATTTTGCGAAGAAATGAC 59.004 34.615 13.76 2.61 0.00 3.06
188 189 7.096640 CGTGTAAAATTTTGCGAAGAAATGACT 60.097 33.333 13.76 0.00 0.00 3.41
189 190 8.539674 GTGTAAAATTTTGCGAAGAAATGACTT 58.460 29.630 13.76 0.00 0.00 3.01
190 191 8.751335 TGTAAAATTTTGCGAAGAAATGACTTC 58.249 29.630 13.76 0.00 41.70 3.01
191 192 8.968242 GTAAAATTTTGCGAAGAAATGACTTCT 58.032 29.630 13.76 0.00 46.92 2.85
200 201 4.073293 AGAAATGACTTCTTGTGGTCGT 57.927 40.909 0.00 0.00 41.97 4.34
201 202 4.451900 AGAAATGACTTCTTGTGGTCGTT 58.548 39.130 0.00 0.00 41.97 3.85
203 204 4.552166 AATGACTTCTTGTGGTCGTTTG 57.448 40.909 0.00 0.00 38.15 2.93
204 205 2.980568 TGACTTCTTGTGGTCGTTTGT 58.019 42.857 0.00 0.00 35.45 2.83
205 206 2.675844 TGACTTCTTGTGGTCGTTTGTG 59.324 45.455 0.00 0.00 35.45 3.33
206 207 1.400494 ACTTCTTGTGGTCGTTTGTGC 59.600 47.619 0.00 0.00 0.00 4.57
207 208 0.375454 TTCTTGTGGTCGTTTGTGCG 59.625 50.000 0.00 0.00 0.00 5.34
208 209 1.654137 CTTGTGGTCGTTTGTGCGC 60.654 57.895 0.00 0.00 0.00 6.09
209 210 2.316361 CTTGTGGTCGTTTGTGCGCA 62.316 55.000 5.66 5.66 0.00 6.09
210 211 1.923227 TTGTGGTCGTTTGTGCGCAA 61.923 50.000 14.00 9.01 0.00 4.85
211 212 1.226435 GTGGTCGTTTGTGCGCAAA 60.226 52.632 21.05 21.05 41.77 3.68
212 213 0.593773 GTGGTCGTTTGTGCGCAAAT 60.594 50.000 26.71 0.00 45.11 2.32
213 214 0.945099 TGGTCGTTTGTGCGCAAATA 59.055 45.000 26.71 16.02 45.11 1.40
214 215 1.333931 TGGTCGTTTGTGCGCAAATAA 59.666 42.857 26.71 15.67 45.11 1.40
215 216 2.223502 TGGTCGTTTGTGCGCAAATAAA 60.224 40.909 26.71 11.74 45.11 1.40
216 217 2.789893 GGTCGTTTGTGCGCAAATAAAA 59.210 40.909 26.71 8.23 45.11 1.52
217 218 3.243177 GGTCGTTTGTGCGCAAATAAAAA 59.757 39.130 26.71 5.49 45.11 1.94
218 219 4.084797 GGTCGTTTGTGCGCAAATAAAAAT 60.085 37.500 26.71 0.00 45.11 1.82
219 220 5.063722 GTCGTTTGTGCGCAAATAAAAATC 58.936 37.500 26.71 12.06 45.11 2.17
220 221 4.740205 TCGTTTGTGCGCAAATAAAAATCA 59.260 33.333 26.71 0.00 45.11 2.57
221 222 5.232202 TCGTTTGTGCGCAAATAAAAATCAA 59.768 32.000 26.71 5.85 45.11 2.57
222 223 6.070196 CGTTTGTGCGCAAATAAAAATCAAT 58.930 32.000 26.71 0.00 45.11 2.57
223 224 7.114953 TCGTTTGTGCGCAAATAAAAATCAATA 59.885 29.630 26.71 0.00 45.11 1.90
224 225 7.211678 CGTTTGTGCGCAAATAAAAATCAATAC 59.788 33.333 26.71 10.11 45.11 1.89
225 226 7.881643 TTGTGCGCAAATAAAAATCAATACT 57.118 28.000 14.00 0.00 0.00 2.12
226 227 8.972262 TTGTGCGCAAATAAAAATCAATACTA 57.028 26.923 14.00 0.00 0.00 1.82
227 228 9.579768 TTGTGCGCAAATAAAAATCAATACTAT 57.420 25.926 14.00 0.00 0.00 2.12
253 254 8.647143 ATGAAAGTTACCATTCAAGTTTGTTG 57.353 30.769 5.51 0.00 38.88 3.33
254 255 7.831753 TGAAAGTTACCATTCAAGTTTGTTGA 58.168 30.769 0.00 0.00 32.89 3.18
255 256 8.307483 TGAAAGTTACCATTCAAGTTTGTTGAA 58.693 29.630 2.83 2.83 41.91 2.69
256 257 8.702163 AAAGTTACCATTCAAGTTTGTTGAAG 57.298 30.769 6.37 0.00 41.13 3.02
257 258 7.404671 AGTTACCATTCAAGTTTGTTGAAGT 57.595 32.000 6.37 2.95 41.13 3.01
258 259 7.836842 AGTTACCATTCAAGTTTGTTGAAGTT 58.163 30.769 6.37 0.00 41.13 2.66
259 260 7.759433 AGTTACCATTCAAGTTTGTTGAAGTTG 59.241 33.333 6.37 1.45 45.85 3.16
260 261 4.869861 ACCATTCAAGTTTGTTGAAGTTGC 59.130 37.500 6.37 0.00 44.69 4.17
261 262 4.869297 CCATTCAAGTTTGTTGAAGTTGCA 59.131 37.500 6.37 0.00 44.69 4.08
262 263 5.524646 CCATTCAAGTTTGTTGAAGTTGCAT 59.475 36.000 6.37 0.00 44.69 3.96
263 264 6.037391 CCATTCAAGTTTGTTGAAGTTGCATT 59.963 34.615 6.37 0.00 44.69 3.56
264 265 7.414319 CCATTCAAGTTTGTTGAAGTTGCATTT 60.414 33.333 6.37 0.00 44.69 2.32
265 266 7.432350 TTCAAGTTTGTTGAAGTTGCATTTT 57.568 28.000 0.00 0.00 44.69 1.82
266 267 7.432350 TCAAGTTTGTTGAAGTTGCATTTTT 57.568 28.000 0.00 0.00 44.69 1.94
287 288 5.767816 TTTTTCTGCCTAGAAGAACAACC 57.232 39.130 7.19 0.00 43.41 3.77
288 289 4.431416 TTTCTGCCTAGAAGAACAACCA 57.569 40.909 7.19 0.00 43.41 3.67
289 290 4.431416 TTCTGCCTAGAAGAACAACCAA 57.569 40.909 0.00 0.00 37.99 3.67
290 291 4.008074 TCTGCCTAGAAGAACAACCAAG 57.992 45.455 0.00 0.00 0.00 3.61
291 292 3.391296 TCTGCCTAGAAGAACAACCAAGT 59.609 43.478 0.00 0.00 0.00 3.16
292 293 4.137543 CTGCCTAGAAGAACAACCAAGTT 58.862 43.478 0.00 0.00 0.00 2.66
293 294 5.071250 TCTGCCTAGAAGAACAACCAAGTTA 59.929 40.000 0.00 0.00 0.00 2.24
294 295 5.876357 TGCCTAGAAGAACAACCAAGTTAT 58.124 37.500 0.00 0.00 0.00 1.89
295 296 6.303839 TGCCTAGAAGAACAACCAAGTTATT 58.696 36.000 0.00 0.00 35.80 1.40
296 297 6.775629 TGCCTAGAAGAACAACCAAGTTATTT 59.224 34.615 0.00 0.00 33.50 1.40
297 298 7.040686 TGCCTAGAAGAACAACCAAGTTATTTC 60.041 37.037 0.00 0.00 33.50 2.17
298 299 7.175119 GCCTAGAAGAACAACCAAGTTATTTCT 59.825 37.037 0.00 0.00 38.25 2.52
299 300 9.067986 CCTAGAAGAACAACCAAGTTATTTCTT 57.932 33.333 12.58 12.58 38.55 2.52
300 301 9.884465 CTAGAAGAACAACCAAGTTATTTCTTG 57.116 33.333 15.61 0.00 42.86 3.02
312 313 8.195617 CAAGTTATTTCTTGGCAAAAACTTCA 57.804 30.769 15.43 0.00 40.49 3.02
313 314 8.829612 CAAGTTATTTCTTGGCAAAAACTTCAT 58.170 29.630 15.43 0.00 40.49 2.57
315 316 9.476202 AGTTATTTCTTGGCAAAAACTTCATAC 57.524 29.630 0.00 0.00 0.00 2.39
316 317 9.255304 GTTATTTCTTGGCAAAAACTTCATACA 57.745 29.630 0.00 0.00 0.00 2.29
317 318 7.951530 ATTTCTTGGCAAAAACTTCATACAG 57.048 32.000 0.00 0.00 0.00 2.74
318 319 6.707440 TTCTTGGCAAAAACTTCATACAGA 57.293 33.333 0.00 0.00 0.00 3.41
319 320 6.707440 TCTTGGCAAAAACTTCATACAGAA 57.293 33.333 0.00 0.00 34.41 3.02
331 332 4.357018 TCATACAGAAGTAGCACACTCG 57.643 45.455 0.00 0.00 36.04 4.18
332 333 4.007659 TCATACAGAAGTAGCACACTCGA 58.992 43.478 0.00 0.00 36.04 4.04
333 334 4.640647 TCATACAGAAGTAGCACACTCGAT 59.359 41.667 0.00 0.00 36.04 3.59
334 335 3.495670 ACAGAAGTAGCACACTCGATC 57.504 47.619 0.00 0.00 36.04 3.69
335 336 2.820197 ACAGAAGTAGCACACTCGATCA 59.180 45.455 0.00 0.00 36.04 2.92
336 337 3.445450 ACAGAAGTAGCACACTCGATCAT 59.555 43.478 0.00 0.00 36.04 2.45
337 338 3.795639 CAGAAGTAGCACACTCGATCATG 59.204 47.826 0.00 0.00 36.04 3.07
338 339 3.696548 AGAAGTAGCACACTCGATCATGA 59.303 43.478 0.00 0.00 36.04 3.07
339 340 4.340666 AGAAGTAGCACACTCGATCATGAT 59.659 41.667 8.25 8.25 36.04 2.45
340 341 4.235939 AGTAGCACACTCGATCATGATC 57.764 45.455 23.42 23.42 28.33 2.92
341 342 3.633986 AGTAGCACACTCGATCATGATCA 59.366 43.478 30.13 18.24 37.69 2.92
342 343 3.747854 AGCACACTCGATCATGATCAT 57.252 42.857 30.13 15.43 37.69 2.45
343 344 3.651206 AGCACACTCGATCATGATCATC 58.349 45.455 30.13 10.26 37.69 2.92
344 345 3.069158 AGCACACTCGATCATGATCATCA 59.931 43.478 30.13 15.33 37.69 3.07
345 346 3.183976 GCACACTCGATCATGATCATCAC 59.816 47.826 30.13 12.25 37.69 3.06
346 347 4.365723 CACACTCGATCATGATCATCACA 58.634 43.478 30.13 11.04 37.69 3.58
347 348 4.807304 CACACTCGATCATGATCATCACAA 59.193 41.667 30.13 10.79 37.69 3.33
348 349 5.292589 CACACTCGATCATGATCATCACAAA 59.707 40.000 30.13 9.33 37.69 2.83
349 350 5.876460 ACACTCGATCATGATCATCACAAAA 59.124 36.000 30.13 8.17 37.69 2.44
350 351 6.541278 ACACTCGATCATGATCATCACAAAAT 59.459 34.615 30.13 7.89 37.69 1.82
351 352 6.851330 CACTCGATCATGATCATCACAAAATG 59.149 38.462 30.13 13.31 37.69 2.32
352 353 6.017357 ACTCGATCATGATCATCACAAAATGG 60.017 38.462 30.13 12.86 37.69 3.16
353 354 5.824097 TCGATCATGATCATCACAAAATGGT 59.176 36.000 30.13 0.00 37.69 3.55
354 355 6.319405 TCGATCATGATCATCACAAAATGGTT 59.681 34.615 30.13 0.00 37.69 3.67
355 356 6.976349 CGATCATGATCATCACAAAATGGTTT 59.024 34.615 30.13 0.00 37.69 3.27
356 357 7.166970 CGATCATGATCATCACAAAATGGTTTC 59.833 37.037 30.13 3.71 37.69 2.78
357 358 7.229581 TCATGATCATCACAAAATGGTTTCA 57.770 32.000 4.86 0.00 0.00 2.69
358 359 7.842982 TCATGATCATCACAAAATGGTTTCAT 58.157 30.769 4.86 0.00 34.56 2.57
359 360 8.968969 TCATGATCATCACAAAATGGTTTCATA 58.031 29.630 4.86 0.00 32.44 2.15
360 361 9.589111 CATGATCATCACAAAATGGTTTCATAA 57.411 29.630 4.86 0.00 32.44 1.90
364 365 9.947433 ATCATCACAAAATGGTTTCATAATTGT 57.053 25.926 0.00 0.00 40.78 2.71
365 366 9.775854 TCATCACAAAATGGTTTCATAATTGTT 57.224 25.926 0.00 0.00 39.45 2.83
368 369 8.834465 TCACAAAATGGTTTCATAATTGTTTGG 58.166 29.630 0.00 0.00 39.45 3.28
369 370 8.834465 CACAAAATGGTTTCATAATTGTTTGGA 58.166 29.630 0.00 0.00 39.45 3.53
370 371 9.571816 ACAAAATGGTTTCATAATTGTTTGGAT 57.428 25.926 0.00 0.00 38.91 3.41
416 417 7.994425 AAAATGATATATACAATGCACCCGA 57.006 32.000 0.00 0.00 0.00 5.14
417 418 7.994425 AAATGATATATACAATGCACCCGAA 57.006 32.000 0.00 0.00 0.00 4.30
418 419 7.994425 AATGATATATACAATGCACCCGAAA 57.006 32.000 0.00 0.00 0.00 3.46
419 420 6.795098 TGATATATACAATGCACCCGAAAC 57.205 37.500 0.00 0.00 0.00 2.78
420 421 6.530120 TGATATATACAATGCACCCGAAACT 58.470 36.000 0.00 0.00 0.00 2.66
421 422 7.672240 TGATATATACAATGCACCCGAAACTA 58.328 34.615 0.00 0.00 0.00 2.24
422 423 7.817478 TGATATATACAATGCACCCGAAACTAG 59.183 37.037 0.00 0.00 0.00 2.57
423 424 2.561478 ACAATGCACCCGAAACTAGT 57.439 45.000 0.00 0.00 0.00 2.57
424 425 2.151202 ACAATGCACCCGAAACTAGTG 58.849 47.619 0.00 0.00 34.58 2.74
425 426 2.224426 ACAATGCACCCGAAACTAGTGA 60.224 45.455 0.00 0.00 33.21 3.41
426 427 2.811431 CAATGCACCCGAAACTAGTGAA 59.189 45.455 0.00 0.00 33.21 3.18
427 428 2.851263 TGCACCCGAAACTAGTGAAT 57.149 45.000 0.00 0.00 33.21 2.57
428 429 3.134574 TGCACCCGAAACTAGTGAATT 57.865 42.857 0.00 0.00 33.21 2.17
429 430 4.274602 TGCACCCGAAACTAGTGAATTA 57.725 40.909 0.00 0.00 33.21 1.40
430 431 4.839121 TGCACCCGAAACTAGTGAATTAT 58.161 39.130 0.00 0.00 33.21 1.28
431 432 5.979993 TGCACCCGAAACTAGTGAATTATA 58.020 37.500 0.00 0.00 33.21 0.98
432 433 6.588204 TGCACCCGAAACTAGTGAATTATAT 58.412 36.000 0.00 0.00 33.21 0.86
433 434 6.704493 TGCACCCGAAACTAGTGAATTATATC 59.296 38.462 0.00 0.00 33.21 1.63
434 435 6.929606 GCACCCGAAACTAGTGAATTATATCT 59.070 38.462 0.00 0.00 33.21 1.98
435 436 7.441458 GCACCCGAAACTAGTGAATTATATCTT 59.559 37.037 0.00 0.00 33.21 2.40
436 437 9.976511 CACCCGAAACTAGTGAATTATATCTTA 57.023 33.333 0.00 0.00 33.21 2.10
472 473 4.792521 TTTTTGCGGGCATTAATGTAGT 57.207 36.364 16.61 0.00 0.00 2.73
473 474 5.899120 TTTTTGCGGGCATTAATGTAGTA 57.101 34.783 16.61 5.65 0.00 1.82
474 475 6.458232 TTTTTGCGGGCATTAATGTAGTAT 57.542 33.333 16.61 0.00 0.00 2.12
475 476 7.569639 TTTTTGCGGGCATTAATGTAGTATA 57.430 32.000 16.61 1.84 0.00 1.47
476 477 7.753309 TTTTGCGGGCATTAATGTAGTATAT 57.247 32.000 16.61 0.00 0.00 0.86
477 478 6.978343 TTGCGGGCATTAATGTAGTATATC 57.022 37.500 16.61 0.00 0.00 1.63
478 479 6.043854 TGCGGGCATTAATGTAGTATATCA 57.956 37.500 16.61 2.73 0.00 2.15
479 480 6.649155 TGCGGGCATTAATGTAGTATATCAT 58.351 36.000 16.61 0.00 0.00 2.45
480 481 7.787028 TGCGGGCATTAATGTAGTATATCATA 58.213 34.615 16.61 0.00 0.00 2.15
481 482 7.926018 TGCGGGCATTAATGTAGTATATCATAG 59.074 37.037 16.61 0.00 0.00 2.23
482 483 7.385205 GCGGGCATTAATGTAGTATATCATAGG 59.615 40.741 16.61 0.00 0.00 2.57
483 484 8.638873 CGGGCATTAATGTAGTATATCATAGGA 58.361 37.037 16.61 0.00 0.00 2.94
536 537 3.749609 CCCCCGTTTCTAAATATAAGCCG 59.250 47.826 0.00 0.00 0.00 5.52
537 538 4.383173 CCCCGTTTCTAAATATAAGCCGT 58.617 43.478 0.00 0.00 0.00 5.68
538 539 4.818005 CCCCGTTTCTAAATATAAGCCGTT 59.182 41.667 0.00 0.00 0.00 4.44
539 540 5.297527 CCCCGTTTCTAAATATAAGCCGTTT 59.702 40.000 0.00 0.00 0.00 3.60
540 541 6.183360 CCCCGTTTCTAAATATAAGCCGTTTT 60.183 38.462 0.00 0.00 0.00 2.43
541 542 7.012232 CCCCGTTTCTAAATATAAGCCGTTTTA 59.988 37.037 0.00 0.00 0.00 1.52
542 543 8.066000 CCCGTTTCTAAATATAAGCCGTTTTAG 58.934 37.037 0.00 0.00 34.47 1.85
543 544 8.819974 CCGTTTCTAAATATAAGCCGTTTTAGA 58.180 33.333 0.00 0.00 38.33 2.10
544 545 9.845305 CGTTTCTAAATATAAGCCGTTTTAGAG 57.155 33.333 0.00 0.00 40.09 2.43
553 554 7.923414 ATAAGCCGTTTTAGAGATTTCAACT 57.077 32.000 0.00 0.00 0.00 3.16
554 555 5.613358 AGCCGTTTTAGAGATTTCAACTG 57.387 39.130 0.00 0.00 0.00 3.16
555 556 4.455877 AGCCGTTTTAGAGATTTCAACTGG 59.544 41.667 0.00 0.00 0.00 4.00
556 557 4.454504 GCCGTTTTAGAGATTTCAACTGGA 59.545 41.667 0.00 0.00 0.00 3.86
557 558 5.617087 GCCGTTTTAGAGATTTCAACTGGAC 60.617 44.000 0.00 0.00 0.00 4.02
558 559 5.701290 CCGTTTTAGAGATTTCAACTGGACT 59.299 40.000 0.00 0.00 0.00 3.85
559 560 6.872020 CCGTTTTAGAGATTTCAACTGGACTA 59.128 38.462 0.00 0.00 0.00 2.59
560 561 7.148623 CCGTTTTAGAGATTTCAACTGGACTAC 60.149 40.741 0.00 0.00 0.00 2.73
561 562 7.384115 CGTTTTAGAGATTTCAACTGGACTACA 59.616 37.037 0.00 0.00 0.00 2.74
562 563 9.220767 GTTTTAGAGATTTCAACTGGACTACAT 57.779 33.333 0.00 0.00 0.00 2.29
564 565 9.871238 TTTAGAGATTTCAACTGGACTACATAC 57.129 33.333 0.00 0.00 0.00 2.39
565 566 6.565234 AGAGATTTCAACTGGACTACATACG 58.435 40.000 0.00 0.00 0.00 3.06
566 567 5.661458 AGATTTCAACTGGACTACATACGG 58.339 41.667 0.00 0.00 0.00 4.02
567 568 5.421056 AGATTTCAACTGGACTACATACGGA 59.579 40.000 0.00 0.00 0.00 4.69
568 569 5.670792 TTTCAACTGGACTACATACGGAT 57.329 39.130 0.00 0.00 0.00 4.18
569 570 4.649088 TCAACTGGACTACATACGGATG 57.351 45.455 5.94 5.94 39.16 3.51
571 572 5.195185 TCAACTGGACTACATACGGATGTA 58.805 41.667 19.32 19.32 44.77 2.29
572 573 5.831525 TCAACTGGACTACATACGGATGTAT 59.168 40.000 20.64 11.04 45.42 2.29
573 574 6.999871 TCAACTGGACTACATACGGATGTATA 59.000 38.462 20.64 1.71 45.42 1.47
574 575 7.668469 TCAACTGGACTACATACGGATGTATAT 59.332 37.037 20.64 12.15 45.42 0.86
575 576 7.627298 ACTGGACTACATACGGATGTATATC 57.373 40.000 20.64 19.06 45.42 1.63
576 577 7.173032 ACTGGACTACATACGGATGTATATCA 58.827 38.462 20.64 16.05 45.42 2.15
577 578 7.668469 ACTGGACTACATACGGATGTATATCAA 59.332 37.037 20.64 13.50 45.42 2.57
578 579 8.589701 TGGACTACATACGGATGTATATCAAT 57.410 34.615 20.64 3.17 45.42 2.57
579 580 9.689501 TGGACTACATACGGATGTATATCAATA 57.310 33.333 20.64 9.11 45.42 1.90
611 612 8.845413 AGGATATAGATTCACTCATTTTGCTC 57.155 34.615 0.00 0.00 0.00 4.26
612 613 7.882271 AGGATATAGATTCACTCATTTTGCTCC 59.118 37.037 0.00 0.00 0.00 4.70
613 614 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
614 615 2.421424 AGATTCACTCATTTTGCTCCGC 59.579 45.455 0.00 0.00 0.00 5.54
615 616 1.603456 TTCACTCATTTTGCTCCGCA 58.397 45.000 0.00 0.00 36.47 5.69
616 617 1.825090 TCACTCATTTTGCTCCGCAT 58.175 45.000 0.00 0.00 38.76 4.73
617 618 1.469703 TCACTCATTTTGCTCCGCATG 59.530 47.619 0.00 0.00 38.76 4.06
618 619 1.200716 CACTCATTTTGCTCCGCATGT 59.799 47.619 0.00 0.00 38.76 3.21
619 620 2.419673 CACTCATTTTGCTCCGCATGTA 59.580 45.455 0.00 0.00 38.76 2.29
620 621 2.679837 ACTCATTTTGCTCCGCATGTAG 59.320 45.455 0.00 0.00 38.76 2.74
621 622 2.679837 CTCATTTTGCTCCGCATGTAGT 59.320 45.455 0.00 0.00 38.76 2.73
622 623 3.081061 TCATTTTGCTCCGCATGTAGTT 58.919 40.909 0.00 0.00 38.76 2.24
623 624 3.126858 TCATTTTGCTCCGCATGTAGTTC 59.873 43.478 0.00 0.00 38.76 3.01
624 625 2.177394 TTTGCTCCGCATGTAGTTCA 57.823 45.000 0.00 0.00 38.76 3.18
625 626 2.401583 TTGCTCCGCATGTAGTTCAT 57.598 45.000 0.00 0.00 38.76 2.57
626 627 3.535280 TTGCTCCGCATGTAGTTCATA 57.465 42.857 0.00 0.00 38.76 2.15
627 628 3.751479 TGCTCCGCATGTAGTTCATAT 57.249 42.857 0.00 0.00 34.67 1.78
628 629 4.071961 TGCTCCGCATGTAGTTCATATT 57.928 40.909 0.00 0.00 34.67 1.28
629 630 3.809279 TGCTCCGCATGTAGTTCATATTG 59.191 43.478 0.00 0.00 34.67 1.90
630 631 4.058124 GCTCCGCATGTAGTTCATATTGA 58.942 43.478 0.00 0.00 34.67 2.57
631 632 4.511454 GCTCCGCATGTAGTTCATATTGAA 59.489 41.667 0.00 0.00 34.67 2.69
632 633 5.180117 GCTCCGCATGTAGTTCATATTGAAT 59.820 40.000 0.00 0.00 38.79 2.57
633 634 6.293626 GCTCCGCATGTAGTTCATATTGAATT 60.294 38.462 0.00 0.00 38.79 2.17
634 635 7.566760 TCCGCATGTAGTTCATATTGAATTT 57.433 32.000 0.00 0.00 38.79 1.82
635 636 7.639039 TCCGCATGTAGTTCATATTGAATTTC 58.361 34.615 0.00 0.00 38.79 2.17
636 637 7.498900 TCCGCATGTAGTTCATATTGAATTTCT 59.501 33.333 0.00 0.00 38.79 2.52
637 638 8.773645 CCGCATGTAGTTCATATTGAATTTCTA 58.226 33.333 0.00 0.00 38.79 2.10
664 665 9.907229 AAAAGACTTATATTTAGGAACTGAGGG 57.093 33.333 0.00 0.00 41.52 4.30
665 666 8.855804 AAGACTTATATTTAGGAACTGAGGGA 57.144 34.615 0.00 0.00 41.52 4.20
666 667 8.485578 AGACTTATATTTAGGAACTGAGGGAG 57.514 38.462 0.00 0.00 41.52 4.30
667 668 8.068733 AGACTTATATTTAGGAACTGAGGGAGT 58.931 37.037 0.00 0.00 41.52 3.85
668 669 9.364653 GACTTATATTTAGGAACTGAGGGAGTA 57.635 37.037 0.00 0.00 41.52 2.59
669 670 9.900112 ACTTATATTTAGGAACTGAGGGAGTAT 57.100 33.333 0.00 0.00 41.52 2.12
674 675 7.899648 TTTAGGAACTGAGGGAGTATCTTAG 57.100 40.000 0.00 0.00 41.52 2.18
675 676 5.475398 AGGAACTGAGGGAGTATCTTAGT 57.525 43.478 0.00 0.00 37.18 2.24
676 677 6.593759 AGGAACTGAGGGAGTATCTTAGTA 57.406 41.667 0.00 0.00 37.18 1.82
677 678 7.169287 AGGAACTGAGGGAGTATCTTAGTAT 57.831 40.000 0.00 0.00 37.18 2.12
678 679 8.290463 AGGAACTGAGGGAGTATCTTAGTATA 57.710 38.462 0.00 0.00 37.18 1.47
679 680 8.387813 AGGAACTGAGGGAGTATCTTAGTATAG 58.612 40.741 0.00 0.00 37.18 1.31
680 681 7.121611 GGAACTGAGGGAGTATCTTAGTATAGC 59.878 44.444 0.00 0.00 33.09 2.97
698 699 0.179119 GCAATGCATTGAGAGTGCCC 60.179 55.000 37.36 16.77 41.83 5.36
699 700 0.458669 CAATGCATTGAGAGTGCCCC 59.541 55.000 31.47 0.00 41.83 5.80
704 705 3.019003 ATTGAGAGTGCCCCGACGG 62.019 63.158 6.99 6.99 0.00 4.79
719 720 2.869801 CCGACGGCAAAAATAGAGCATA 59.130 45.455 0.00 0.00 0.00 3.14
726 727 7.196331 ACGGCAAAAATAGAGCATATCTTTTC 58.804 34.615 0.00 0.00 39.64 2.29
791 792 5.774690 TGGTTGCCTTTCTCTTTGACATTAT 59.225 36.000 0.00 0.00 0.00 1.28
792 793 6.945435 TGGTTGCCTTTCTCTTTGACATTATA 59.055 34.615 0.00 0.00 0.00 0.98
793 794 7.615365 TGGTTGCCTTTCTCTTTGACATTATAT 59.385 33.333 0.00 0.00 0.00 0.86
840 889 9.252962 GTATCATTTTGCTGGATTTCTTATTGG 57.747 33.333 0.00 0.00 0.00 3.16
841 890 7.479352 TCATTTTGCTGGATTTCTTATTGGA 57.521 32.000 0.00 0.00 0.00 3.53
842 891 7.905265 TCATTTTGCTGGATTTCTTATTGGAA 58.095 30.769 0.00 0.00 0.00 3.53
844 893 7.961325 TTTTGCTGGATTTCTTATTGGAAAC 57.039 32.000 0.00 0.00 37.91 2.78
845 894 5.659440 TGCTGGATTTCTTATTGGAAACC 57.341 39.130 0.00 0.00 37.91 3.27
846 895 4.157656 TGCTGGATTTCTTATTGGAAACCG 59.842 41.667 0.00 0.00 37.91 4.44
991 1079 1.502690 TATACCCAAGACATGCCGGT 58.497 50.000 1.90 0.00 0.00 5.28
1018 1106 2.357050 CCAAGCCACACCCTTCATCATA 60.357 50.000 0.00 0.00 0.00 2.15
1019 1107 2.684881 CAAGCCACACCCTTCATCATAC 59.315 50.000 0.00 0.00 0.00 2.39
1088 1180 3.648982 CGCACGCACCAAGCAGAA 61.649 61.111 0.00 0.00 46.13 3.02
1377 1469 3.406595 CTTCCTCATCCCCACGGCC 62.407 68.421 0.00 0.00 0.00 6.13
1642 1740 1.169661 CGAGAGCATAGCCGAGGAGT 61.170 60.000 0.00 0.00 0.00 3.85
1689 1787 4.974645 TTCCACTTCTTTTGCCTCTCTA 57.025 40.909 0.00 0.00 0.00 2.43
1749 1847 0.392336 GATCGATTGCTGAGGAGCCT 59.608 55.000 0.00 0.00 45.57 4.58
1767 1865 2.616842 GCCTTTTTGTCTCTCCGTCAAA 59.383 45.455 0.00 0.00 0.00 2.69
1779 1877 3.513912 TCTCCGTCAAAGCTTAATCTCCA 59.486 43.478 0.00 0.00 0.00 3.86
1791 1889 7.565190 AGCTTAATCTCCATAATCCTGATGA 57.435 36.000 0.00 0.00 0.00 2.92
1816 1914 6.690194 AAGTGTAAGGATGCTCATTCATTC 57.310 37.500 0.00 0.00 0.00 2.67
1895 1994 4.260139 TGTACAAACAGAATGCGGACTA 57.740 40.909 0.00 0.00 42.53 2.59
1917 2016 7.515643 ACTAGGTTCGTTGATTTGTTTATTCG 58.484 34.615 0.00 0.00 0.00 3.34
1928 2027 2.683968 TGTTTATTCGCGAGCTGTTCT 58.316 42.857 9.59 0.00 0.00 3.01
1929 2028 2.666508 TGTTTATTCGCGAGCTGTTCTC 59.333 45.455 9.59 0.00 38.47 2.87
1932 2031 2.483583 ATTCGCGAGCTGTTCTCTAG 57.516 50.000 9.59 0.00 39.70 2.43
1934 2033 2.019948 TCGCGAGCTGTTCTCTAGTA 57.980 50.000 3.71 0.00 39.70 1.82
1995 3115 5.278957 CCCAACAGGGTCTAAAACAGATTTG 60.279 44.000 0.00 0.00 37.83 2.32
2071 3191 4.882396 GGCGCTCGAAGGCTCCTC 62.882 72.222 7.64 0.00 34.59 3.71
2079 3199 2.283676 AAGGCTCCTCGACGGGAA 60.284 61.111 0.00 0.00 34.66 3.97
2090 3210 1.742768 GACGGGAAGATGCTCGGAT 59.257 57.895 0.00 0.00 0.00 4.18
2091 3211 0.319125 GACGGGAAGATGCTCGGATC 60.319 60.000 0.00 0.00 0.00 3.36
2092 3212 0.757188 ACGGGAAGATGCTCGGATCT 60.757 55.000 0.00 0.00 33.91 2.75
2093 3213 0.038709 CGGGAAGATGCTCGGATCTC 60.039 60.000 1.31 0.00 31.07 2.75
2094 3214 1.337118 GGGAAGATGCTCGGATCTCT 58.663 55.000 1.31 0.00 31.07 3.10
2096 3216 2.238521 GGAAGATGCTCGGATCTCTCT 58.761 52.381 1.31 0.00 31.07 3.10
2097 3217 2.228822 GGAAGATGCTCGGATCTCTCTC 59.771 54.545 1.31 0.00 31.07 3.20
2098 3218 1.522668 AGATGCTCGGATCTCTCTCG 58.477 55.000 0.00 0.00 0.00 4.04
2099 3219 0.521291 GATGCTCGGATCTCTCTCGG 59.479 60.000 0.00 0.00 0.00 4.63
2102 3222 1.890041 CTCGGATCTCTCTCGGCGT 60.890 63.158 6.85 0.00 0.00 5.68
2103 3223 1.440938 CTCGGATCTCTCTCGGCGTT 61.441 60.000 6.85 0.00 0.00 4.84
2104 3224 1.298713 CGGATCTCTCTCGGCGTTG 60.299 63.158 6.85 1.06 0.00 4.10
2105 3225 1.810532 GGATCTCTCTCGGCGTTGT 59.189 57.895 6.85 0.00 0.00 3.32
2106 3226 1.022735 GGATCTCTCTCGGCGTTGTA 58.977 55.000 6.85 0.00 0.00 2.41
2107 3227 1.002251 GGATCTCTCTCGGCGTTGTAG 60.002 57.143 6.85 0.00 0.00 2.74
2108 3228 1.002251 GATCTCTCTCGGCGTTGTAGG 60.002 57.143 6.85 0.00 0.00 3.18
2109 3229 1.226717 CTCTCTCGGCGTTGTAGGC 60.227 63.158 6.85 0.00 0.00 3.93
2110 3230 2.202756 CTCTCGGCGTTGTAGGCC 60.203 66.667 6.85 0.00 45.15 5.19
2111 3231 3.718210 CTCTCGGCGTTGTAGGCCC 62.718 68.421 6.85 0.00 45.80 5.80
2112 3232 4.832608 CTCGGCGTTGTAGGCCCC 62.833 72.222 6.85 0.00 45.80 5.80
2167 3287 0.806102 CTCGACATGGCCCTACAACG 60.806 60.000 0.00 0.00 0.00 4.10
2168 3288 2.461110 CGACATGGCCCTACAACGC 61.461 63.158 0.00 0.00 0.00 4.84
2169 3289 1.078426 GACATGGCCCTACAACGCT 60.078 57.895 0.00 0.00 0.00 5.07
2170 3290 0.676782 GACATGGCCCTACAACGCTT 60.677 55.000 0.00 0.00 0.00 4.68
2171 3291 0.251165 ACATGGCCCTACAACGCTTT 60.251 50.000 0.00 0.00 0.00 3.51
2172 3292 0.887933 CATGGCCCTACAACGCTTTT 59.112 50.000 0.00 0.00 0.00 2.27
2173 3293 1.272212 CATGGCCCTACAACGCTTTTT 59.728 47.619 0.00 0.00 0.00 1.94
2189 3309 2.472614 TTTTTACGGGGGCCCTACA 58.527 52.632 24.38 4.27 0.00 2.74
2190 3310 0.776176 TTTTTACGGGGGCCCTACAA 59.224 50.000 24.38 10.82 0.00 2.41
2191 3311 0.038021 TTTTACGGGGGCCCTACAAC 59.962 55.000 24.38 3.59 0.00 3.32
2195 3315 4.043100 GGGGGCCCTACAACGCTT 62.043 66.667 24.38 0.00 0.00 4.68
2230 3350 0.457851 CCTCTTTCCGACTCGAGCAT 59.542 55.000 13.61 0.00 0.00 3.79
2239 3359 4.112634 TCCGACTCGAGCATTATTTTGAG 58.887 43.478 13.61 0.00 0.00 3.02
2280 3400 4.645535 TCTAGCTGCAGTTTGATTTCACT 58.354 39.130 16.64 1.94 0.00 3.41
2299 3426 7.630242 TTCACTGGGATCTCAAATTGTATTC 57.370 36.000 0.00 0.00 0.00 1.75
2360 3560 9.219603 CCGATGTTATATTCCACACATATTTCT 57.780 33.333 0.00 0.00 29.81 2.52
2393 3593 2.227865 ACACGGTTGCATTGTATTCCAC 59.772 45.455 0.00 0.00 0.00 4.02
2397 3597 2.159435 GGTTGCATTGTATTCCACCGTC 60.159 50.000 0.00 0.00 0.00 4.79
2434 3634 7.485418 TTTTAGAAACATTGCAGAGACGTTA 57.515 32.000 0.00 0.00 0.00 3.18
2477 3677 4.255833 TCCAATCCATTTTCACTGCAAC 57.744 40.909 0.00 0.00 0.00 4.17
2497 3697 7.428826 TGCAACACACAAATGTTTCACATATA 58.571 30.769 0.00 0.00 40.89 0.86
2547 3747 4.020543 CAATTATTTTGGGACGGAGGGAA 58.979 43.478 0.00 0.00 0.00 3.97
2555 3755 1.138464 GGGACGGAGGGAATACTTCAC 59.862 57.143 0.00 0.00 0.00 3.18
2573 3773 7.943079 ACTTCACAATATGTTGATCCATTCA 57.057 32.000 9.40 0.00 38.71 2.57
2592 3792 9.604569 TCCATTCAAATATCATAACCATTCCAT 57.395 29.630 0.00 0.00 0.00 3.41
2615 3815 9.859427 CCATGAATATTTCACACACATTTAACT 57.141 29.630 0.00 0.00 43.48 2.24
2661 3882 0.037326 CCGGTGCAGCACTAGAAAGA 60.037 55.000 24.75 0.00 34.40 2.52
2693 3914 6.976934 AACTAGAAAACCATTCCACAACAT 57.023 33.333 0.00 0.00 0.00 2.71
2706 4212 8.351461 CCATTCCACAACATTTTAAAAATTGCT 58.649 29.630 20.21 10.44 0.00 3.91
2828 4335 5.649970 TTTACTCCTTACTGTGGGGAAAA 57.350 39.130 5.38 2.50 0.00 2.29
2847 4354 2.520458 CCCCCACAGCTCAACCAA 59.480 61.111 0.00 0.00 0.00 3.67
2854 4361 3.432046 CCCACAGCTCAACCAAAACAAAT 60.432 43.478 0.00 0.00 0.00 2.32
2858 4365 6.314896 CCACAGCTCAACCAAAACAAATTTTA 59.685 34.615 0.00 0.00 35.79 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.830975 GGTTTCATTGGGTATTTTTGCTATATT 57.169 29.630 0.00 0.00 0.00 1.28
33 34 9.212593 AGGTTTCATTGGGTATTTTTGCTATAT 57.787 29.630 0.00 0.00 0.00 0.86
34 35 8.602472 AGGTTTCATTGGGTATTTTTGCTATA 57.398 30.769 0.00 0.00 0.00 1.31
35 36 7.494922 AGGTTTCATTGGGTATTTTTGCTAT 57.505 32.000 0.00 0.00 0.00 2.97
36 37 6.926630 AGGTTTCATTGGGTATTTTTGCTA 57.073 33.333 0.00 0.00 0.00 3.49
37 38 5.823861 AGGTTTCATTGGGTATTTTTGCT 57.176 34.783 0.00 0.00 0.00 3.91
38 39 6.106003 CCTAGGTTTCATTGGGTATTTTTGC 58.894 40.000 0.00 0.00 0.00 3.68
39 40 7.178451 AGACCTAGGTTTCATTGGGTATTTTTG 59.822 37.037 17.53 0.00 0.00 2.44
40 41 7.246027 AGACCTAGGTTTCATTGGGTATTTTT 58.754 34.615 17.53 0.00 0.00 1.94
41 42 6.800890 AGACCTAGGTTTCATTGGGTATTTT 58.199 36.000 17.53 0.00 0.00 1.82
42 43 6.402981 AGACCTAGGTTTCATTGGGTATTT 57.597 37.500 17.53 0.00 0.00 1.40
43 44 6.101296 CCTAGACCTAGGTTTCATTGGGTATT 59.899 42.308 17.53 0.00 45.93 1.89
44 45 5.607171 CCTAGACCTAGGTTTCATTGGGTAT 59.393 44.000 17.53 0.00 45.93 2.73
45 46 4.966805 CCTAGACCTAGGTTTCATTGGGTA 59.033 45.833 17.53 0.00 45.93 3.69
46 47 3.780850 CCTAGACCTAGGTTTCATTGGGT 59.219 47.826 17.53 0.00 45.93 4.51
47 48 4.423625 CCTAGACCTAGGTTTCATTGGG 57.576 50.000 17.53 7.49 45.93 4.12
58 59 5.070446 TCAATTATGGTGTGCCTAGACCTAG 59.930 44.000 0.00 0.00 40.77 3.02
59 60 4.966168 TCAATTATGGTGTGCCTAGACCTA 59.034 41.667 0.00 0.00 40.77 3.08
60 61 3.780294 TCAATTATGGTGTGCCTAGACCT 59.220 43.478 0.00 0.00 40.77 3.85
61 62 4.150897 TCAATTATGGTGTGCCTAGACC 57.849 45.455 0.00 0.00 40.56 3.85
62 63 4.941263 TGTTCAATTATGGTGTGCCTAGAC 59.059 41.667 0.00 0.00 35.27 2.59
63 64 5.172687 TGTTCAATTATGGTGTGCCTAGA 57.827 39.130 0.00 0.00 35.27 2.43
64 65 5.895636 TTGTTCAATTATGGTGTGCCTAG 57.104 39.130 0.00 0.00 35.27 3.02
65 66 6.656632 TTTTGTTCAATTATGGTGTGCCTA 57.343 33.333 0.00 0.00 35.27 3.93
66 67 5.543507 TTTTGTTCAATTATGGTGTGCCT 57.456 34.783 0.00 0.00 35.27 4.75
67 68 8.491331 AATATTTTGTTCAATTATGGTGTGCC 57.509 30.769 0.00 0.00 0.00 5.01
97 98 9.558396 TGGAATTGCTTGACATTTTCTATTTTT 57.442 25.926 0.00 0.00 0.00 1.94
98 99 9.558396 TTGGAATTGCTTGACATTTTCTATTTT 57.442 25.926 0.00 0.00 0.00 1.82
99 100 9.558396 TTTGGAATTGCTTGACATTTTCTATTT 57.442 25.926 0.00 0.00 0.00 1.40
100 101 9.558396 TTTTGGAATTGCTTGACATTTTCTATT 57.442 25.926 0.00 0.00 0.00 1.73
101 102 8.992073 GTTTTGGAATTGCTTGACATTTTCTAT 58.008 29.630 0.00 0.00 0.00 1.98
102 103 7.984050 TGTTTTGGAATTGCTTGACATTTTCTA 59.016 29.630 0.00 0.00 0.00 2.10
103 104 6.822676 TGTTTTGGAATTGCTTGACATTTTCT 59.177 30.769 0.00 0.00 0.00 2.52
104 105 7.014092 TGTTTTGGAATTGCTTGACATTTTC 57.986 32.000 0.00 0.00 0.00 2.29
105 106 6.998968 TGTTTTGGAATTGCTTGACATTTT 57.001 29.167 0.00 0.00 0.00 1.82
106 107 7.571080 AATGTTTTGGAATTGCTTGACATTT 57.429 28.000 14.57 5.23 33.99 2.32
107 108 7.571080 AAATGTTTTGGAATTGCTTGACATT 57.429 28.000 14.57 14.57 37.89 2.71
108 109 7.419204 CAAAATGTTTTGGAATTGCTTGACAT 58.581 30.769 9.75 3.11 42.81 3.06
109 110 6.783162 CAAAATGTTTTGGAATTGCTTGACA 58.217 32.000 9.75 0.80 42.81 3.58
111 112 8.950210 TTTACAAAATGTTTTGGAATTGCTTGA 58.050 25.926 19.08 1.57 46.90 3.02
112 113 9.224058 CTTTACAAAATGTTTTGGAATTGCTTG 57.776 29.630 19.08 0.00 46.90 4.01
113 114 9.171877 TCTTTACAAAATGTTTTGGAATTGCTT 57.828 25.926 19.08 2.30 46.90 3.91
114 115 8.729805 TCTTTACAAAATGTTTTGGAATTGCT 57.270 26.923 19.08 2.89 46.90 3.91
115 116 9.949174 ATTCTTTACAAAATGTTTTGGAATTGC 57.051 25.926 19.08 0.00 46.90 3.56
158 159 5.201910 TCTTCGCAAAATTTTACACGTGAG 58.798 37.500 25.01 3.53 0.00 3.51
159 160 5.158101 TCTTCGCAAAATTTTACACGTGA 57.842 34.783 25.01 2.68 0.00 4.35
160 161 5.858159 TTCTTCGCAAAATTTTACACGTG 57.142 34.783 15.48 15.48 0.00 4.49
161 162 6.693545 TCATTTCTTCGCAAAATTTTACACGT 59.306 30.769 2.44 0.00 0.00 4.49
162 163 6.995633 GTCATTTCTTCGCAAAATTTTACACG 59.004 34.615 2.44 8.27 0.00 4.49
163 164 8.061125 AGTCATTTCTTCGCAAAATTTTACAC 57.939 30.769 2.44 0.00 0.00 2.90
164 165 8.641499 AAGTCATTTCTTCGCAAAATTTTACA 57.359 26.923 2.44 0.00 0.00 2.41
165 166 8.968242 AGAAGTCATTTCTTCGCAAAATTTTAC 58.032 29.630 2.44 0.00 43.68 2.01
180 181 4.813296 AACGACCACAAGAAGTCATTTC 57.187 40.909 0.00 0.00 35.97 2.17
181 182 4.398044 ACAAACGACCACAAGAAGTCATTT 59.602 37.500 0.00 0.00 29.18 2.32
182 183 3.945285 ACAAACGACCACAAGAAGTCATT 59.055 39.130 0.00 0.00 33.08 2.57
183 184 3.312421 CACAAACGACCACAAGAAGTCAT 59.688 43.478 0.00 0.00 33.08 3.06
184 185 2.675844 CACAAACGACCACAAGAAGTCA 59.324 45.455 0.00 0.00 33.08 3.41
185 186 2.538939 GCACAAACGACCACAAGAAGTC 60.539 50.000 0.00 0.00 0.00 3.01
186 187 1.400494 GCACAAACGACCACAAGAAGT 59.600 47.619 0.00 0.00 0.00 3.01
187 188 1.594518 CGCACAAACGACCACAAGAAG 60.595 52.381 0.00 0.00 34.06 2.85
188 189 0.375454 CGCACAAACGACCACAAGAA 59.625 50.000 0.00 0.00 34.06 2.52
189 190 2.010670 CGCACAAACGACCACAAGA 58.989 52.632 0.00 0.00 34.06 3.02
190 191 1.654137 GCGCACAAACGACCACAAG 60.654 57.895 0.30 0.00 34.06 3.16
191 192 1.923227 TTGCGCACAAACGACCACAA 61.923 50.000 11.12 0.00 31.21 3.33
192 193 1.923227 TTTGCGCACAAACGACCACA 61.923 50.000 11.12 0.00 40.84 4.17
193 194 1.226435 TTTGCGCACAAACGACCAC 60.226 52.632 11.12 0.00 40.84 4.16
194 195 3.188011 TTTGCGCACAAACGACCA 58.812 50.000 11.12 0.00 40.84 4.02
201 202 7.881643 AGTATTGATTTTTATTTGCGCACAA 57.118 28.000 11.12 8.32 0.00 3.33
231 232 8.311109 ACTTCAACAAACTTGAATGGTAACTTT 58.689 29.630 0.00 0.00 37.72 2.66
232 233 7.836842 ACTTCAACAAACTTGAATGGTAACTT 58.163 30.769 0.00 0.00 37.72 2.66
233 234 7.404671 ACTTCAACAAACTTGAATGGTAACT 57.595 32.000 0.00 0.00 37.72 2.24
234 235 7.464045 GCAACTTCAACAAACTTGAATGGTAAC 60.464 37.037 0.00 0.00 37.72 2.50
235 236 6.533367 GCAACTTCAACAAACTTGAATGGTAA 59.467 34.615 0.00 0.00 37.72 2.85
236 237 6.039616 GCAACTTCAACAAACTTGAATGGTA 58.960 36.000 0.00 0.00 37.72 3.25
237 238 4.869861 GCAACTTCAACAAACTTGAATGGT 59.130 37.500 0.00 0.00 37.72 3.55
238 239 4.869297 TGCAACTTCAACAAACTTGAATGG 59.131 37.500 0.00 0.00 37.72 3.16
239 240 6.592798 ATGCAACTTCAACAAACTTGAATG 57.407 33.333 0.00 0.00 37.72 2.67
240 241 7.614124 AAATGCAACTTCAACAAACTTGAAT 57.386 28.000 0.00 0.00 37.72 2.57
241 242 7.432350 AAAATGCAACTTCAACAAACTTGAA 57.568 28.000 0.00 0.00 36.98 2.69
242 243 7.432350 AAAAATGCAACTTCAACAAACTTGA 57.568 28.000 0.00 0.00 0.00 3.02
265 266 5.197451 TGGTTGTTCTTCTAGGCAGAAAAA 58.803 37.500 6.81 5.75 40.28 1.94
266 267 4.787551 TGGTTGTTCTTCTAGGCAGAAAA 58.212 39.130 6.81 0.43 40.28 2.29
267 268 4.431416 TGGTTGTTCTTCTAGGCAGAAA 57.569 40.909 6.81 0.00 40.28 2.52
268 269 4.141482 ACTTGGTTGTTCTTCTAGGCAGAA 60.141 41.667 2.14 2.14 38.49 3.02
269 270 3.391296 ACTTGGTTGTTCTTCTAGGCAGA 59.609 43.478 0.00 0.00 0.00 4.26
270 271 3.744660 ACTTGGTTGTTCTTCTAGGCAG 58.255 45.455 0.00 0.00 0.00 4.85
271 272 3.857157 ACTTGGTTGTTCTTCTAGGCA 57.143 42.857 0.00 0.00 0.00 4.75
272 273 6.819397 AATAACTTGGTTGTTCTTCTAGGC 57.181 37.500 0.00 0.00 0.00 3.93
273 274 8.622948 AGAAATAACTTGGTTGTTCTTCTAGG 57.377 34.615 0.00 0.00 33.89 3.02
274 275 9.884465 CAAGAAATAACTTGGTTGTTCTTCTAG 57.116 33.333 14.88 0.00 42.17 2.43
287 288 8.195617 TGAAGTTTTTGCCAAGAAATAACTTG 57.804 30.769 8.16 0.00 44.50 3.16
288 289 8.962884 ATGAAGTTTTTGCCAAGAAATAACTT 57.037 26.923 4.23 4.23 0.00 2.66
289 290 9.476202 GTATGAAGTTTTTGCCAAGAAATAACT 57.524 29.630 0.00 0.00 0.00 2.24
290 291 9.255304 TGTATGAAGTTTTTGCCAAGAAATAAC 57.745 29.630 0.00 0.00 0.00 1.89
291 292 9.474920 CTGTATGAAGTTTTTGCCAAGAAATAA 57.525 29.630 0.00 0.00 0.00 1.40
292 293 8.855110 TCTGTATGAAGTTTTTGCCAAGAAATA 58.145 29.630 0.00 0.00 0.00 1.40
293 294 7.725251 TCTGTATGAAGTTTTTGCCAAGAAAT 58.275 30.769 0.00 0.00 0.00 2.17
294 295 7.106439 TCTGTATGAAGTTTTTGCCAAGAAA 57.894 32.000 0.00 0.00 0.00 2.52
295 296 6.707440 TCTGTATGAAGTTTTTGCCAAGAA 57.293 33.333 0.00 0.00 0.00 2.52
296 297 6.707440 TTCTGTATGAAGTTTTTGCCAAGA 57.293 33.333 0.00 0.00 0.00 3.02
297 298 6.998258 CTTCTGTATGAAGTTTTTGCCAAG 57.002 37.500 0.00 0.00 45.26 3.61
309 310 4.457949 TCGAGTGTGCTACTTCTGTATGAA 59.542 41.667 0.00 0.00 40.53 2.57
310 311 4.007659 TCGAGTGTGCTACTTCTGTATGA 58.992 43.478 0.00 0.00 40.53 2.15
311 312 4.357018 TCGAGTGTGCTACTTCTGTATG 57.643 45.455 0.00 0.00 40.53 2.39
312 313 4.640647 TGATCGAGTGTGCTACTTCTGTAT 59.359 41.667 0.00 0.00 40.53 2.29
313 314 4.007659 TGATCGAGTGTGCTACTTCTGTA 58.992 43.478 0.00 0.00 40.53 2.74
314 315 2.820197 TGATCGAGTGTGCTACTTCTGT 59.180 45.455 0.00 0.00 40.53 3.41
315 316 3.494045 TGATCGAGTGTGCTACTTCTG 57.506 47.619 0.00 0.00 40.53 3.02
316 317 3.696548 TCATGATCGAGTGTGCTACTTCT 59.303 43.478 0.00 0.00 40.53 2.85
317 318 4.033990 TCATGATCGAGTGTGCTACTTC 57.966 45.455 0.00 0.00 40.53 3.01
318 319 4.098501 TGATCATGATCGAGTGTGCTACTT 59.901 41.667 26.52 0.00 40.63 2.24
319 320 3.633986 TGATCATGATCGAGTGTGCTACT 59.366 43.478 26.52 0.00 40.63 2.57
320 321 3.969899 TGATCATGATCGAGTGTGCTAC 58.030 45.455 26.52 3.80 40.63 3.58
321 322 4.279169 TGATGATCATGATCGAGTGTGCTA 59.721 41.667 26.52 9.63 40.63 3.49
322 323 3.069158 TGATGATCATGATCGAGTGTGCT 59.931 43.478 26.52 7.21 40.63 4.40
323 324 3.183976 GTGATGATCATGATCGAGTGTGC 59.816 47.826 26.52 12.92 40.63 4.57
324 325 4.365723 TGTGATGATCATGATCGAGTGTG 58.634 43.478 26.52 0.00 40.63 3.82
325 326 4.660789 TGTGATGATCATGATCGAGTGT 57.339 40.909 26.52 12.55 40.63 3.55
326 327 5.978934 TTTGTGATGATCATGATCGAGTG 57.021 39.130 26.52 0.00 40.63 3.51
327 328 6.017357 CCATTTTGTGATGATCATGATCGAGT 60.017 38.462 26.52 16.92 40.63 4.18
328 329 6.017357 ACCATTTTGTGATGATCATGATCGAG 60.017 38.462 26.52 9.38 40.63 4.04
329 330 5.824097 ACCATTTTGTGATGATCATGATCGA 59.176 36.000 26.52 17.58 40.63 3.59
330 331 6.068473 ACCATTTTGTGATGATCATGATCG 57.932 37.500 26.52 12.62 40.63 3.69
331 332 7.977293 TGAAACCATTTTGTGATGATCATGATC 59.023 33.333 25.91 25.91 38.29 2.92
332 333 7.842982 TGAAACCATTTTGTGATGATCATGAT 58.157 30.769 14.30 8.25 0.00 2.45
333 334 7.229581 TGAAACCATTTTGTGATGATCATGA 57.770 32.000 14.30 0.44 0.00 3.07
334 335 9.589111 TTATGAAACCATTTTGTGATGATCATG 57.411 29.630 14.30 0.00 32.33 3.07
338 339 9.947433 ACAATTATGAAACCATTTTGTGATGAT 57.053 25.926 0.00 0.00 32.65 2.45
339 340 9.775854 AACAATTATGAAACCATTTTGTGATGA 57.224 25.926 0.00 0.00 33.42 2.92
342 343 8.834465 CCAAACAATTATGAAACCATTTTGTGA 58.166 29.630 0.00 0.00 33.42 3.58
343 344 8.834465 TCCAAACAATTATGAAACCATTTTGTG 58.166 29.630 0.00 0.00 33.42 3.33
344 345 8.970859 TCCAAACAATTATGAAACCATTTTGT 57.029 26.923 0.00 0.00 33.98 2.83
390 391 9.508642 TCGGGTGCATTGTATATATCATTTTAA 57.491 29.630 0.00 0.00 0.00 1.52
391 392 9.508642 TTCGGGTGCATTGTATATATCATTTTA 57.491 29.630 0.00 0.00 0.00 1.52
392 393 7.994425 TCGGGTGCATTGTATATATCATTTT 57.006 32.000 0.00 0.00 0.00 1.82
393 394 7.994425 TTCGGGTGCATTGTATATATCATTT 57.006 32.000 0.00 0.00 0.00 2.32
394 395 7.665559 AGTTTCGGGTGCATTGTATATATCATT 59.334 33.333 0.00 0.00 0.00 2.57
395 396 7.168219 AGTTTCGGGTGCATTGTATATATCAT 58.832 34.615 0.00 0.00 0.00 2.45
396 397 6.530120 AGTTTCGGGTGCATTGTATATATCA 58.470 36.000 0.00 0.00 0.00 2.15
397 398 7.817962 ACTAGTTTCGGGTGCATTGTATATATC 59.182 37.037 0.00 0.00 0.00 1.63
398 399 7.602644 CACTAGTTTCGGGTGCATTGTATATAT 59.397 37.037 0.00 0.00 0.00 0.86
399 400 6.926826 CACTAGTTTCGGGTGCATTGTATATA 59.073 38.462 0.00 0.00 0.00 0.86
400 401 5.758296 CACTAGTTTCGGGTGCATTGTATAT 59.242 40.000 0.00 0.00 0.00 0.86
401 402 5.105269 TCACTAGTTTCGGGTGCATTGTATA 60.105 40.000 0.00 0.00 0.00 1.47
402 403 3.938963 CACTAGTTTCGGGTGCATTGTAT 59.061 43.478 0.00 0.00 0.00 2.29
403 404 3.007074 TCACTAGTTTCGGGTGCATTGTA 59.993 43.478 0.00 0.00 0.00 2.41
404 405 2.151202 CACTAGTTTCGGGTGCATTGT 58.849 47.619 0.00 0.00 0.00 2.71
405 406 2.422597 TCACTAGTTTCGGGTGCATTG 58.577 47.619 0.00 0.00 0.00 2.82
406 407 2.851263 TCACTAGTTTCGGGTGCATT 57.149 45.000 0.00 0.00 0.00 3.56
407 408 2.851263 TTCACTAGTTTCGGGTGCAT 57.149 45.000 0.00 0.00 0.00 3.96
408 409 2.851263 ATTCACTAGTTTCGGGTGCA 57.149 45.000 0.00 0.00 0.00 4.57
409 410 6.929606 AGATATAATTCACTAGTTTCGGGTGC 59.070 38.462 0.00 0.00 0.00 5.01
410 411 8.888579 AAGATATAATTCACTAGTTTCGGGTG 57.111 34.615 0.00 0.00 0.00 4.61
451 452 4.792521 ACTACATTAATGCCCGCAAAAA 57.207 36.364 15.48 0.00 0.00 1.94
452 453 7.445707 TGATATACTACATTAATGCCCGCAAAA 59.554 33.333 15.48 0.00 0.00 2.44
453 454 6.937465 TGATATACTACATTAATGCCCGCAAA 59.063 34.615 15.48 0.00 0.00 3.68
454 455 6.468543 TGATATACTACATTAATGCCCGCAA 58.531 36.000 15.48 0.00 0.00 4.85
455 456 6.043854 TGATATACTACATTAATGCCCGCA 57.956 37.500 15.48 0.00 0.00 5.69
456 457 7.385205 CCTATGATATACTACATTAATGCCCGC 59.615 40.741 15.48 0.00 0.00 6.13
457 458 8.638873 TCCTATGATATACTACATTAATGCCCG 58.361 37.037 15.48 6.53 0.00 6.13
514 515 3.749609 CGGCTTATATTTAGAAACGGGGG 59.250 47.826 0.00 0.00 0.00 5.40
515 516 4.383173 ACGGCTTATATTTAGAAACGGGG 58.617 43.478 0.00 0.00 0.00 5.73
516 517 5.996669 AACGGCTTATATTTAGAAACGGG 57.003 39.130 0.00 0.00 0.00 5.28
517 518 8.819974 TCTAAAACGGCTTATATTTAGAAACGG 58.180 33.333 4.78 0.00 39.89 4.44
518 519 9.845305 CTCTAAAACGGCTTATATTTAGAAACG 57.155 33.333 7.86 0.00 41.34 3.60
527 528 9.614792 AGTTGAAATCTCTAAAACGGCTTATAT 57.385 29.630 0.00 0.00 0.00 0.86
528 529 8.879759 CAGTTGAAATCTCTAAAACGGCTTATA 58.120 33.333 0.00 0.00 0.00 0.98
529 530 7.148239 CCAGTTGAAATCTCTAAAACGGCTTAT 60.148 37.037 0.00 0.00 0.00 1.73
530 531 6.148811 CCAGTTGAAATCTCTAAAACGGCTTA 59.851 38.462 0.00 0.00 0.00 3.09
531 532 5.048713 CCAGTTGAAATCTCTAAAACGGCTT 60.049 40.000 0.00 0.00 0.00 4.35
532 533 4.455877 CCAGTTGAAATCTCTAAAACGGCT 59.544 41.667 0.00 0.00 0.00 5.52
533 534 4.454504 TCCAGTTGAAATCTCTAAAACGGC 59.545 41.667 0.00 0.00 0.00 5.68
534 535 5.701290 AGTCCAGTTGAAATCTCTAAAACGG 59.299 40.000 0.00 0.00 0.00 4.44
535 536 6.787085 AGTCCAGTTGAAATCTCTAAAACG 57.213 37.500 0.00 0.00 0.00 3.60
536 537 8.603242 TGTAGTCCAGTTGAAATCTCTAAAAC 57.397 34.615 0.00 0.00 0.00 2.43
538 539 9.871238 GTATGTAGTCCAGTTGAAATCTCTAAA 57.129 33.333 0.00 0.00 0.00 1.85
539 540 8.188799 CGTATGTAGTCCAGTTGAAATCTCTAA 58.811 37.037 0.00 0.00 0.00 2.10
540 541 7.201794 CCGTATGTAGTCCAGTTGAAATCTCTA 60.202 40.741 0.00 0.00 0.00 2.43
541 542 6.405953 CCGTATGTAGTCCAGTTGAAATCTCT 60.406 42.308 0.00 0.00 0.00 3.10
542 543 5.749109 CCGTATGTAGTCCAGTTGAAATCTC 59.251 44.000 0.00 0.00 0.00 2.75
543 544 5.421056 TCCGTATGTAGTCCAGTTGAAATCT 59.579 40.000 0.00 0.00 0.00 2.40
544 545 5.657474 TCCGTATGTAGTCCAGTTGAAATC 58.343 41.667 0.00 0.00 0.00 2.17
545 546 5.670792 TCCGTATGTAGTCCAGTTGAAAT 57.329 39.130 0.00 0.00 0.00 2.17
546 547 5.046878 ACATCCGTATGTAGTCCAGTTGAAA 60.047 40.000 0.00 0.00 44.66 2.69
547 548 4.464951 ACATCCGTATGTAGTCCAGTTGAA 59.535 41.667 0.00 0.00 44.66 2.69
548 549 4.021229 ACATCCGTATGTAGTCCAGTTGA 58.979 43.478 0.00 0.00 44.66 3.18
549 550 4.386867 ACATCCGTATGTAGTCCAGTTG 57.613 45.455 0.00 0.00 44.66 3.16
585 586 9.935241 GAGCAAAATGAGTGAATCTATATCCTA 57.065 33.333 0.00 0.00 0.00 2.94
586 587 7.882271 GGAGCAAAATGAGTGAATCTATATCCT 59.118 37.037 0.00 0.00 0.00 3.24
587 588 7.148507 CGGAGCAAAATGAGTGAATCTATATCC 60.149 40.741 0.00 0.00 0.00 2.59
588 589 7.737395 CGGAGCAAAATGAGTGAATCTATATC 58.263 38.462 0.00 0.00 0.00 1.63
589 590 7.664082 CGGAGCAAAATGAGTGAATCTATAT 57.336 36.000 0.00 0.00 0.00 0.86
591 592 5.998454 CGGAGCAAAATGAGTGAATCTAT 57.002 39.130 0.00 0.00 0.00 1.98
608 609 4.511454 TTCAATATGAACTACATGCGGAGC 59.489 41.667 0.00 0.00 42.98 4.70
609 610 6.791887 ATTCAATATGAACTACATGCGGAG 57.208 37.500 0.00 0.00 39.45 4.63
610 611 7.498900 AGAAATTCAATATGAACTACATGCGGA 59.501 33.333 0.00 0.00 39.45 5.54
611 612 7.642669 AGAAATTCAATATGAACTACATGCGG 58.357 34.615 0.00 0.00 39.45 5.69
638 639 9.907229 CCCTCAGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
639 640 9.280456 TCCCTCAGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
640 641 8.855804 TCCCTCAGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
641 642 8.068733 ACTCCCTCAGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 26.56 3.24
642 643 8.252624 ACTCCCTCAGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 26.56 3.01
643 644 9.900112 ATACTCCCTCAGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 36.43 2.24
648 649 9.589461 CTAAGATACTCCCTCAGTTCCTAAATA 57.411 37.037 0.00 0.00 36.43 1.40
649 650 8.068733 ACTAAGATACTCCCTCAGTTCCTAAAT 58.931 37.037 0.00 0.00 36.43 1.40
650 651 7.420029 ACTAAGATACTCCCTCAGTTCCTAAA 58.580 38.462 0.00 0.00 36.43 1.85
651 652 6.982899 ACTAAGATACTCCCTCAGTTCCTAA 58.017 40.000 0.00 0.00 36.43 2.69
652 653 6.593759 ACTAAGATACTCCCTCAGTTCCTA 57.406 41.667 0.00 0.00 36.43 2.94
653 654 5.475398 ACTAAGATACTCCCTCAGTTCCT 57.525 43.478 0.00 0.00 36.43 3.36
654 655 7.121611 GCTATACTAAGATACTCCCTCAGTTCC 59.878 44.444 0.00 0.00 36.43 3.62
655 656 7.666388 TGCTATACTAAGATACTCCCTCAGTTC 59.334 40.741 0.00 0.00 36.43 3.01
656 657 7.527796 TGCTATACTAAGATACTCCCTCAGTT 58.472 38.462 0.00 0.00 36.43 3.16
657 658 7.092748 TGCTATACTAAGATACTCCCTCAGT 57.907 40.000 0.00 0.00 39.41 3.41
658 659 8.465999 CATTGCTATACTAAGATACTCCCTCAG 58.534 40.741 0.00 0.00 0.00 3.35
659 660 7.093727 GCATTGCTATACTAAGATACTCCCTCA 60.094 40.741 0.16 0.00 0.00 3.86
660 661 7.093727 TGCATTGCTATACTAAGATACTCCCTC 60.094 40.741 10.49 0.00 0.00 4.30
661 662 6.726299 TGCATTGCTATACTAAGATACTCCCT 59.274 38.462 10.49 0.00 0.00 4.20
662 663 6.936279 TGCATTGCTATACTAAGATACTCCC 58.064 40.000 10.49 0.00 0.00 4.30
663 664 8.877779 CAATGCATTGCTATACTAAGATACTCC 58.122 37.037 25.50 0.00 0.00 3.85
664 665 9.645059 TCAATGCATTGCTATACTAAGATACTC 57.355 33.333 30.57 0.00 37.68 2.59
665 666 9.650539 CTCAATGCATTGCTATACTAAGATACT 57.349 33.333 30.57 0.00 37.68 2.12
666 667 9.645059 TCTCAATGCATTGCTATACTAAGATAC 57.355 33.333 30.57 0.00 37.68 2.24
667 668 9.866798 CTCTCAATGCATTGCTATACTAAGATA 57.133 33.333 30.57 10.79 37.68 1.98
668 669 8.373981 ACTCTCAATGCATTGCTATACTAAGAT 58.626 33.333 30.57 13.89 37.68 2.40
669 670 7.654923 CACTCTCAATGCATTGCTATACTAAGA 59.345 37.037 30.57 23.03 37.68 2.10
670 671 7.570875 GCACTCTCAATGCATTGCTATACTAAG 60.571 40.741 30.57 20.54 42.88 2.18
671 672 6.203530 GCACTCTCAATGCATTGCTATACTAA 59.796 38.462 30.57 12.78 42.88 2.24
672 673 5.698089 GCACTCTCAATGCATTGCTATACTA 59.302 40.000 30.57 13.46 42.88 1.82
673 674 4.514441 GCACTCTCAATGCATTGCTATACT 59.486 41.667 30.57 10.58 42.88 2.12
674 675 4.320057 GGCACTCTCAATGCATTGCTATAC 60.320 45.833 30.57 18.35 45.27 1.47
675 676 3.817084 GGCACTCTCAATGCATTGCTATA 59.183 43.478 30.57 15.16 45.27 1.31
676 677 2.621998 GGCACTCTCAATGCATTGCTAT 59.378 45.455 30.57 15.12 45.27 2.97
677 678 2.019249 GGCACTCTCAATGCATTGCTA 58.981 47.619 30.57 20.26 45.27 3.49
678 679 0.815734 GGCACTCTCAATGCATTGCT 59.184 50.000 30.57 12.50 45.27 3.91
679 680 0.179119 GGGCACTCTCAATGCATTGC 60.179 55.000 30.57 20.26 45.27 3.56
680 681 0.458669 GGGGCACTCTCAATGCATTG 59.541 55.000 29.75 29.75 45.27 2.82
698 699 1.083489 TGCTCTATTTTTGCCGTCGG 58.917 50.000 6.99 6.99 0.00 4.79
699 700 4.449068 AGATATGCTCTATTTTTGCCGTCG 59.551 41.667 0.00 0.00 30.26 5.12
704 705 8.841444 TTCGAAAAGATATGCTCTATTTTTGC 57.159 30.769 0.00 0.00 32.41 3.68
757 758 9.710900 AAAGAGAAAGGCAACCAATATTTTTAG 57.289 29.630 0.00 0.00 37.17 1.85
765 766 3.960102 TGTCAAAGAGAAAGGCAACCAAT 59.040 39.130 0.00 0.00 37.17 3.16
808 854 8.223330 AGAAATCCAGCAAAATGATACTCCTAT 58.777 33.333 0.00 0.00 0.00 2.57
809 855 7.577303 AGAAATCCAGCAAAATGATACTCCTA 58.423 34.615 0.00 0.00 0.00 2.94
824 873 4.672409 CGGTTTCCAATAAGAAATCCAGC 58.328 43.478 0.00 0.00 38.01 4.85
839 888 1.687297 TTTTTGTGGGGGCGGTTTCC 61.687 55.000 0.00 0.00 0.00 3.13
840 889 0.394938 ATTTTTGTGGGGGCGGTTTC 59.605 50.000 0.00 0.00 0.00 2.78
841 890 1.718280 TATTTTTGTGGGGGCGGTTT 58.282 45.000 0.00 0.00 0.00 3.27
842 891 1.718280 TTATTTTTGTGGGGGCGGTT 58.282 45.000 0.00 0.00 0.00 4.44
844 893 2.100749 GAGATTATTTTTGTGGGGGCGG 59.899 50.000 0.00 0.00 0.00 6.13
845 894 2.100749 GGAGATTATTTTTGTGGGGGCG 59.899 50.000 0.00 0.00 0.00 6.13
846 895 3.103742 TGGAGATTATTTTTGTGGGGGC 58.896 45.455 0.00 0.00 0.00 5.80
991 1079 3.948719 GGTGTGGCTTGGGTCGGA 61.949 66.667 0.00 0.00 0.00 4.55
1018 1106 1.131638 TGTTTGGCTCTGAGACAGGT 58.868 50.000 13.79 0.00 32.83 4.00
1019 1107 2.149578 CTTGTTTGGCTCTGAGACAGG 58.850 52.381 13.79 2.86 32.83 4.00
1642 1740 2.239150 AGTCTACTTGCTAGTCGGAGGA 59.761 50.000 3.45 0.00 35.78 3.71
1702 1800 1.710013 TCACAGCGGAAGATCGAAAC 58.290 50.000 0.00 0.00 0.00 2.78
1749 1847 3.541632 AGCTTTGACGGAGAGACAAAAA 58.458 40.909 0.00 0.00 42.12 1.94
1767 1865 7.565190 TCATCAGGATTATGGAGATTAAGCT 57.435 36.000 0.00 0.00 0.00 3.74
1779 1877 9.347240 CATCCTTACACTTTTCATCAGGATTAT 57.653 33.333 0.00 0.00 37.54 1.28
1791 1889 7.395489 AGAATGAATGAGCATCCTTACACTTTT 59.605 33.333 0.00 0.00 0.00 2.27
1889 1988 3.323243 ACAAATCAACGAACCTAGTCCG 58.677 45.455 0.00 0.00 0.00 4.79
1895 1994 5.151389 GCGAATAAACAAATCAACGAACCT 58.849 37.500 0.00 0.00 0.00 3.50
1932 2031 8.234546 CACCCAAAACAAACATGTCTAGTATAC 58.765 37.037 0.00 0.00 0.00 1.47
1934 2033 6.294508 GCACCCAAAACAAACATGTCTAGTAT 60.295 38.462 0.00 0.00 0.00 2.12
1943 3059 1.140652 CCCAGCACCCAAAACAAACAT 59.859 47.619 0.00 0.00 0.00 2.71
1995 3115 1.946081 GGGCAGCTAATTCTTCAGAGC 59.054 52.381 0.00 0.00 35.07 4.09
2071 3191 2.076622 ATCCGAGCATCTTCCCGTCG 62.077 60.000 0.00 0.00 0.00 5.12
2079 3199 1.522668 CGAGAGAGATCCGAGCATCT 58.477 55.000 0.00 0.00 35.70 2.90
2090 3210 1.654954 GCCTACAACGCCGAGAGAGA 61.655 60.000 0.00 0.00 0.00 3.10
2091 3211 1.226717 GCCTACAACGCCGAGAGAG 60.227 63.158 0.00 0.00 0.00 3.20
2092 3212 2.707849 GGCCTACAACGCCGAGAGA 61.708 63.158 0.00 0.00 36.47 3.10
2093 3213 2.202756 GGCCTACAACGCCGAGAG 60.203 66.667 0.00 0.00 36.47 3.20
2119 3239 1.533129 GCCGTTGCTCTTGACGTTTTT 60.533 47.619 0.00 0.00 37.56 1.94
2120 3240 0.028902 GCCGTTGCTCTTGACGTTTT 59.971 50.000 0.00 0.00 37.56 2.43
2121 3241 1.092921 TGCCGTTGCTCTTGACGTTT 61.093 50.000 0.00 0.00 37.56 3.60
2122 3242 1.498865 CTGCCGTTGCTCTTGACGTT 61.499 55.000 0.00 0.00 37.56 3.99
2123 3243 1.956170 CTGCCGTTGCTCTTGACGT 60.956 57.895 0.00 0.00 37.56 4.34
2124 3244 1.664649 TCTGCCGTTGCTCTTGACG 60.665 57.895 0.00 0.00 38.71 4.35
2125 3245 0.880278 TGTCTGCCGTTGCTCTTGAC 60.880 55.000 0.00 0.00 38.71 3.18
2126 3246 0.179059 TTGTCTGCCGTTGCTCTTGA 60.179 50.000 0.00 0.00 38.71 3.02
2171 3291 0.776176 TTGTAGGGCCCCCGTAAAAA 59.224 50.000 21.43 0.28 41.95 1.94
2172 3292 0.038021 GTTGTAGGGCCCCCGTAAAA 59.962 55.000 21.43 2.55 41.95 1.52
2173 3293 1.684629 GTTGTAGGGCCCCCGTAAA 59.315 57.895 21.43 3.18 41.95 2.01
2174 3294 2.658064 CGTTGTAGGGCCCCCGTAA 61.658 63.158 21.43 6.18 41.95 3.18
2175 3295 3.076278 CGTTGTAGGGCCCCCGTA 61.076 66.667 21.43 0.30 41.95 4.02
2178 3298 2.200923 TTAAGCGTTGTAGGGCCCCC 62.201 60.000 21.43 10.65 0.00 5.40
2179 3299 1.028330 GTTAAGCGTTGTAGGGCCCC 61.028 60.000 21.43 4.15 0.00 5.80
2180 3300 0.321830 TGTTAAGCGTTGTAGGGCCC 60.322 55.000 16.46 16.46 0.00 5.80
2181 3301 1.084289 CTGTTAAGCGTTGTAGGGCC 58.916 55.000 0.00 0.00 0.00 5.80
2182 3302 1.084289 CCTGTTAAGCGTTGTAGGGC 58.916 55.000 0.00 0.00 0.00 5.19
2183 3303 1.734163 CCCTGTTAAGCGTTGTAGGG 58.266 55.000 0.00 0.00 38.96 3.53
2184 3304 2.467566 ACCCTGTTAAGCGTTGTAGG 57.532 50.000 0.00 0.00 0.00 3.18
2185 3305 4.171754 GAGTACCCTGTTAAGCGTTGTAG 58.828 47.826 0.00 0.00 0.00 2.74
2186 3306 3.366273 CGAGTACCCTGTTAAGCGTTGTA 60.366 47.826 0.00 0.00 0.00 2.41
2187 3307 2.608752 CGAGTACCCTGTTAAGCGTTGT 60.609 50.000 0.00 0.00 0.00 3.32
2188 3308 1.990563 CGAGTACCCTGTTAAGCGTTG 59.009 52.381 0.00 0.00 0.00 4.10
2189 3309 1.067354 CCGAGTACCCTGTTAAGCGTT 60.067 52.381 0.00 0.00 0.00 4.84
2190 3310 0.529378 CCGAGTACCCTGTTAAGCGT 59.471 55.000 0.00 0.00 0.00 5.07
2191 3311 0.804933 GCCGAGTACCCTGTTAAGCG 60.805 60.000 0.00 0.00 0.00 4.68
2195 3315 4.039042 GGGCCGAGTACCCTGTTA 57.961 61.111 0.00 0.00 44.68 2.41
2280 3400 8.579006 GCATAATGAATACAATTTGAGATCCCA 58.421 33.333 2.79 0.00 0.00 4.37
2305 3432 7.978982 AGTGAATTGTATCTCACATTGTAAGC 58.021 34.615 5.13 0.00 43.64 3.09
2360 3560 6.691754 ATGCAACCGTGTGAAAATATATCA 57.308 33.333 0.00 0.00 0.00 2.15
2376 3576 1.816224 ACGGTGGAATACAATGCAACC 59.184 47.619 0.00 0.00 0.00 3.77
2393 3593 3.708563 AAAATTGTGTGAACTGGACGG 57.291 42.857 0.00 0.00 0.00 4.79
2397 3597 8.542132 CAATGTTTCTAAAATTGTGTGAACTGG 58.458 33.333 0.00 0.00 0.00 4.00
2434 3634 5.391950 GGAATTGCGTGTGAAATATGAGTGT 60.392 40.000 0.00 0.00 0.00 3.55
2519 3719 5.806818 TCCGTCCCAAAATAATTGTAGTGA 58.193 37.500 0.00 0.00 0.00 3.41
2523 3723 4.227754 TCCCTCCGTCCCAAAATAATTGTA 59.772 41.667 0.00 0.00 0.00 2.41
2536 3736 1.829222 TGTGAAGTATTCCCTCCGTCC 59.171 52.381 0.00 0.00 46.93 4.79
2547 3747 9.631257 TGAATGGATCAACATATTGTGAAGTAT 57.369 29.630 0.00 0.00 37.11 2.12
2615 3815 8.016497 GCATGTGCTTATGTGTTTGAATTTTA 57.984 30.769 0.00 0.00 38.21 1.52
2794 4300 8.755028 ACAGTAAGGAGTAAAACAAACCAAATT 58.245 29.630 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.