>input_sequence_66741
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-----------------------------------------------AGCCACACCCTTCATCATAC---CTGTCTCAGA
GCCAAACAAGACAGAGCCACCACGCGCCTCCCCTCCCGGCAC-GCACGCACCAAGCAGAACAGAGCAGCCGCCGGCGAAG
AGGAGAGGAAGGCGGCAATGGGGAACAGCCTGCGGTGCTGCCTGGCGTGCATGCTCCCCTGCGGCGCGCTGGACGTCGTC
CGCGTGGTGCACCTCAGCGGCCACGTCGACGAGTTCACCTGCCCGCTCATCGCCTCCGACGTGCTGGCCGCGCACCCCAG
CCACGCGCTCACCGCCGCGGGCTCCGCCGGCGCCGCCAGGAGGATCGTCATCGTGTCGCCCGACTCGGAGCTCAGGCGCG
GCCGCATCTACTTCCTCATCCCCACGGCCTGCTCCGCGCCGGCGGCCGAGCTGAAGCGGCCCAAGCAGC------AGCAG
CAGGGCCACGGCGCGTGCCAGTCCAAGACGAAGAGGCGCCACGGCCACGGCCACCGCAAGGGCGGCACGGCGGTGGCCGC
CGCGGCGAGCACGGCGGAGCAGGACAACTACCTGCGGGAGCTCCTGTCCGAGAAGCGGGAGTCGGGCCACCGGCGGCGGC
GCAGCAGCAGCGCCCGCGCCGGCGTGTGGCGGCCGCGGCTCGAGAGCATAGCCGAGGAGTCCTCCGACTAGCAAGTAGAC
TGATTTTCCACTTCTTTTGCCTCTCTACTTCCGCTTTCGGTTTCGATCTTCCGCTGTGAATATGATTGATCGATTGCTGA
GGAGCCTTTTTGTCTCTCCGTCAAAGCTTAATCTCCATAATCCTGATGAAAAGTGTAAGGATGCTCATTCATTCTGGCTC
GGAAGTCGATGGGGAAATTGAAA-AAATGAAAAGATCGCAAGATC-----------------------------------
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>chr1D_1_TraesCS1D01G292900
ATTTATGGATTAAACAGCTAAACAAGTATTTAAATATAGCAAAAATACCCAATGAAACCTAGGTCTAGGCACACCATAAT
TGAACAAAATATTTTTGAAAAATAGAAAATGTCAAGCAATTCCAAAACATTTTGTAAAGAATATGATATAGTTTTGTACT
CACGTGTAAAATTTTGCGAAGAAATGACTTCTTGTGGTCGTTTGTGCGCAAATAAAAATCAATACTATATGAAAGTTACC
ATTCAAGTTTGTTGAAGTTGCATTTTTTTTCTGCCTAGAAGAACAACCAAGTTATTTCTTGGCAAAAACTTCATACAGAA
GTAGCACACTCGATCATGATCATCACAAAATGGTTTCATAATTGTTTGGATTTTTTTTATATTTTTGAAATTAAAATGAT
ATATACAATGCACCCGAAACTAGTGAATTATATCTTAGTGTAGTATATCTTTTTTTGCGGGCATTAATGTAGTATATCAT
AGGAATTAAACATGTATTTACATATATTATACTCCCCCCGTTTCTAAATATAAGCCGTTTTAGAGATTTCAACTGGACTA
CATACGGATGTATATCAATATATTTTAGGATATAGATTCACTCATTTTGCTCCGCATGTAGTTCATATTGAATTTCTAAA
AAGACTTATATTTAGGAACTGAGGGAGTATCTTAGTATAGCAATGCATTGAGAGTGCCCCGACGGCAAAAATAGAGCATA
TCTTTTCGAATCTTACAAATTTAAAAACACATTTGTCCTAAAAATATTGGTTGCCTTTCTCTTTGACATTATAT------
---------------------------------------TATCACACACATATATAGG---AGTATCATTTTGCTGGATT
TCTTATTGGAAACCG----------CCCCCACAAAAATAATCTCCATGTCAAAAGAAGGATC------------------
----------AATGTGCAACCATGCATGTACCCGTTGCGTACTCATTTGGGCACACCATGCACCAAAGCAGATGCCCCC-
ACTCCAAAACAGCTCTATATATACCCAAGACATGCCGGTCCGACCCAAGCCACACCCTTCATCATAC---CTGTCTCAGA
GCCAAACAAGACAGAGCCACCACGCGCCTCCCCTCCCGGCAC-GCACGCACCAAGCAGAACAGAGCAGCCGCCGGCGAAG
AGGAGAGGAAGGCGGCAATGGGGAACAGCCTGCGGTGCTGCCTGGCGTGCATGCTCCCCTGCGGCGCGCTGGACGTCGTC
CGCGTGGTGCACCTCAGCGGCCACGTCGACGAGTTCACCTGCCCGCTCATCGCCTCCGACGTGCTGGCCGCGCACCCCAG
CCACGCGCTCACCGCCGCGGGCTCCGCCGGCGCCGCCAGGAGGATCGTCATCGTGTCGCCCGACTCGGAGCTCAGGCGCG
GCCGCATCTACTTCCTCATCCCCACGGCCTGCTCCGCGCCGGCGGCCGAGCTGAAGCGGCCCAAGCAGC------AGCAG
CAGGGCCACGGCGCGTGCCAGTCCAAGACGAAGAGGCGCCACGGCCACGGCCACCGCAAGGGCGGCACGGCGGTGGCCGC
CGCGGCGAGCACGGCGGAGCAGGACAACTACCTGCGGGAGCTCCTGTCCGAGAAGCGGGAGTCGGGCCACCGGCGGCGGC
GCAGCAGCAGCGCCCGCGCCGGCGTGTGGCGGCCGCGGCTCGAGAGCATAGCCGAGGAGTCCTCCGACTAGCAAGTAGAC
TGATTTTCCACTTCTTTTGCCTCTCTACTTCCGCTTTCGGTTTCGATCTTCCGCTGTGAATATGATTGATCGATTGCTGA
GGAGCCTTTTTGTCTCTCCGTCAAAGCTTAATCTCCATAATCCTGATGAAAAGTGTAAGGATGCTCATTCATTCTGGCTC
GGAAGTCGATGGGGAAATTGAAA-AAATGAAAAGATCGCAAGATCTAGAGTTTGTACAAACAGAATGCGGACTAGGTTCG
TTGATTTGTTTATTCGCGAGCTGTTCTCTAGTA-----------------------------------------------
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----------TACTAGACATGTTTGTTTTGGGTGCTGGGCTAGTGACC----CAACAGGGTCTAAAACAGATTTGCTCTG
AAGAATTAGCTGCCCAACTCGACACCACGCCGAGAGAGATCCGACCGTCGGGCGGCGCTCGAAGGCTCCTCGACGGGAAG
ATGCTCGGATCTCTCTCGGCGTTGTAGGCCCCCCGCAAAAAAACGTCAAGAGCAACGGCAGACAAACCTCGACATGGCCC
TACAACGCTTTTTTTACGGGGGCCCTACAACGCTTAACAGGGTACTCGGCCCTCTTTCCGACTCGAGCATTATTTTGAGA
TACAAATTCAATAAAATTCTAGCTGCAGTTTGATTTCACTGGGATCTCAAATTGTATT-------CATTATGCTTACAAT
GTGAGATACAATTCACTC--AACCGATG----------------------------------------------------
-------------------TTATATTCCACACATATTTCTGATATATTTTCACACGGTTGCATTGTATTCCACCGTCCAG
TTCACACAATTTTAGAAACATTGCAGAGACGTTACACTCATATTTCACACGCAATTCCAATCCATTTTCACTGCAACACA
CAAATGTTTCACATATACTGAACAAATTTAAACTAAAATCACTACAATTATTTTGGGACGGAGGGAATACTTCACAATAT
GTTGATCCATTCAAATATCATAACCATTCCATGAATATTTCACACACATTTAACTAAAATTCAAACACAT----------
-----------AAGCACATGCTCCGGTGCAGCACTAGAAAGATTTTACATAACTAGAAAACCATTCCACAACATTT----
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-----------------------------------------TAAAAATTGCTATTAAAAAGCTATAATTGTAATGCAACT
ATTACACAATAATTTTAGTTTTTTCAGTTTTACCAACAACTAAAATAAGTCAAAATATTAATTTGG-TTTGTTTTACTCC
TTACTGTGGGGAAAACCCCCCACAGCTCAACCAAAACAAATTTTATTAAAGGT
>chr1B_668
TATATTATTATAGTA-----------------------------------------------------------------
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-----------------------------------------AATGCATTGAGAGTGCCATGACGACAAAAATAGAGCATG
TCTTTTTGAATTTGACAAATTTTAGAACACATTTGTCATAAAAATGTTGGATGCCTTTCTCTTTGACATTAGTACCCCTC
GATTCGACCCCTGTGTGTGCCATATGTTGCTGATTTCATTATCACACACATA----------------------------
-----------------------------------------CTCCATGTCAAAAGAATGATCA-----------------
----------AATGTGCAACCATGCATGTACCCGTTGCGTACTCATTTCGGCACACCATGCACCAAGGCAGATGCCCCC-
ACTCCAAAACAGCTCTATATATGCACGAGACATGCCGGGCCGACCCAAGCCACCCT-----TCATCATAGCTGTCTCAGA
GCCAAACAAGACAGAGCCACCACGCGCCTCCCCTTGGCCCCCGGCACGCACCAAGCAGAGCAGAGCAGCCGCCGGCGAAG
AGGAGAGGAAGGCGGCAATGGGGAACAGCCTGCGGTGCTGCCTGGCGTGCATGCTCCCCTGCGGCGCGCTGGACGTCGTC
CGCGTGGTGCACCTCAGCGGCCACGTCGACGAGTTCACCTGCCCGCTCATCGCCTCCGACGTGCTGGCCGCGCACCCCAG
CCACGCGCTGACCGCCGCGGGCTCCGCCGGCGCCGCCAGGAGGATCGTCATCGTGTCGCCCGACTCCGAGCTCAAGCGCG
GCCGCATCTACTTCCTCATCCCCACGGCGTGCTCCGCGCCGGCGGCCGAGCTGAAGCGGCCCAAGCAGCAGCAGCAGCAG
CAGGGCCACGGCGCCTGCCAGTCCAAGACGAAGAGGCGCCACGGCCACGGCCACCGCAAGGGCGGCACGGCGGTGGCCGC
CGCGGCGAGCACGGCGGAGCAGGACAACTACCTGCGGGAGCTCCTGTCCGAGAAGCGGGAGTCGGGCCACCGGCGGCGGC
GCAGCAGCAGCGCCCGCGCCGGCGTGTGGCGGCCGCGGCTCGAGAGCATAGCGGAAGAGCCCTCCGACTAGCAAGTAGAC
TGATTTGCCATTTCTTTTGCCTCTCT---TCTGCTTTCGTTTTCGATCTTCCGCTGTGAATATGATTGATCGATTGCTGA
GGAGCG-TTTTGTCTCTCCGTCAA-GCTTAATCTCCTTAATCCTGATGCAAAGTGTAAGGATGCTCATTCATTTAGGCTC
CGAAGTCGACTGGG----------AAAAGAAAAGATCGCAAGATCTAAAGTTTGTACAAACAGAATTTGGTCTGGGTTCG
TTGATTTGTTTATTCACGCGCTGTTCCATACTGTT---------------------------------------------
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-------------TACACTTGTTTGTTTTGGGTGCTGGGCTAGTGACC----CAACAGGGTCTAAAACAGATTTACTCTG
AAGAACTAGCTGCCCAACTCGACACCACGCCGAGAGAGATCCGACCGTCGGGCGCCGCTCGAAGGCTCCTGGACGGGACG
ATGCTCGGACTCGACATAACGA------------------------CAAGAGCAACGGCAGACAAACCTCGACATGGCCC
TACAAC-------------------------GCTAAACAGGGTACTCGGCCCTCTTTCCGACTCGAGCACTATTTTGACA
TACAAATTCAATAAAATTCTAGCTGCAGTTTGATTTCACCGAGATCTCAAATTGTATTTATTAATTATTATACTTGCAAT
GTGAGATACAATTCACTCAAAACCGATG----------------------------------------------------
-------------------TTATATTCCACACATATTTCGGATATATTTTCACACCATCGCATTGTATTCCA-TGTTCAG
TTCACACAATTTTAGAAACATTGCAGAGACGTTTCACTCATATTTCACACGCGATTCCAATCCATTTTCATTGCAATACA
CAAATGTTTCACACATGCTGAACAAATTTGAACTAAAACCATGACACTCATTTTGAGACGGAGGGAGTACTTCAAAATAT
GTTGATCCATTCGAATATCATAACCATTCCAGGAATATTTCATACACATTTAACGAAAATTCAAACACATAATAACGTTC
AAATAAGTTCGAAGCACATGCTCCGGTGCAACTTTAGAAAGGTTTTACATAACTAGAGGACCATTCCACAACAATTTTAA
AAATTGCCAGTAAAAAACTATGCTTGTAATGCCACTATTACACAATAATTTTAGTTTTTTGAGTTTTACCAAGAACTAAA
ATAAGTCAAAATATCAAATTGGTTTTGTTCTACTCCTTACCGTGGGGAAAACCCCCGCAACTCAACCAAACAAAGTTTAT
TAAAGGTGTACAAGAGTCTAAACTAGAAAACAGAAACAGATACAATATGTTCCAAGCACATGCTCCGGTGCAACTTTAGA
AAAGTTTTGCATAACTAGAAGACCATTCCACAAAATAAAAATAAAAATTGCAATTAAAAAGCTATACTTTTAATGCAACT
ATTACACAATAATTTTAGTTTTTTCAGTTTTACCAAGAACTAAAATAAGTAAAAATATCTATTTGGTTTTGTTTTACTCC
TTACCGTGGGGAAA-CCCCCCACAACTCAACCAGAACAAAATTTCTTAAAGGT
>chr1A_790
TA------------------------------------------------------------------------------
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-----------------------------------TCATTATCACACACATATGAAGGCGTAGTATCATTTTACTGGATT
TCTTATTATTTAAAAAAGAGAACCACCCCCACAAAAATAATCTCCATGTCAAAAGAAGGATCAGTGAGTTGTCAAGAGAA
AAGAAGGATGAATGTGCAACCATGCATGTACCCGTTGCCTACTCATTTGGGCACACCATGCACCAAAGCAGATGCCCCCC
ACTCCAAAACAGCTCTATATATACCCAAGGCATGCCGGGCCGACCCAAGCCACACCCTTCATCATCATAGCTGTCTCAGA
GCCAAACAAGACAGAGCCACCACGCGCCTCCCCTCCCGGCAC-GCACGCACCAAGCAGAGCAGAGCAGCCGCCGGCGAAG
AGCAGAGGAAGGCGGCGATGGGGAACAGCCTGCGGTGCTGCCTGGCGTGCATGCTCCCCTGCGGCGCGCTGGACGTCGTC
CGCGTGGTGCACCTCAGCGGCCACGTCGACGAGTTCACCTGCCCGCTCATCGCCTCCGACGTGCTGGCCGCGCACCCCAG
CCACGCGCTCACCGCCGCGGGCTCCGCCGGCGCCGCCAGGAGGATCGTCATCGTGTCGCCCGACTCCGAGCTCAGGCGCG
GCCGCATCTACTTCCTCATCCCCACGGCGTGCTCCGCGCCGGCGGCCGAGCTGAAGCGGCCCAAGCAGCAGCAGCAGCAG
CAGGGCCACGGCGAGTGCCAGTCCAAGACGAAGAGGCGCCACGGCCACGGCCACCGCAAGGGCGGCGCGGCGGTGGCCGC
CGCGGCGAGCACGGCGGAGCAGGACAACTACCTGCGGGAGCTCCTGTCGGAGAAGCGGGAGTCGGACCACCGGCGGCGGC
GCAGCAGCAGCGCCCGCGCCGGCGTGTGGCGGCCGCGGCTCGAGAGCATAGCGGAGGAGCCCTCCGACTAGCAACTAGAC
TGATTTTCCACTTCTTTTGCCTCTCTTCTTCCGCCTTCGTTTTCGATCTTCCGCTGTGAATATGATTGATCGATTGCTGA
GGAGCCATTTTGACTCTCCGTCAA-GCTTAATCTCCTTAATCCTTATGGAAAGTGTGAGGATGCTCATTCATTTTGGCTC
GGAAGTCGATTGGGAAATTGAAAAAAATGAAAAGATCGCAAGATCTAAAGTTTGTACAAACAGACTGTGGACTGGGCTCG
TTGATTTGTTTATTCCCGAGCTGTTCCATATTGTTTCTCGAAACGGAGTTTTGCCTCCTCGATTAATTAACAAGAAGAGA
ATTGCTCAATTAATTTACAGAAAATCAGGCGAAAACTAATACAAACGAAGCACATACTATCTGCTCACACTGCAAGAAAC
CCCATAACGGTACATGAGACCCCGCCAGTCTCTTCGAATACACAACATCCACATAACCCGACATTGCTACTACACCAAGA
GACCGCCGACAAAAACACCTAGACACAAGGCATAAGGACGGGCCGAGAGATCGAAAGTCATCCATCAAGCAGTCAGAGAC
GCCTTGCCTGTGGCGCCACTCTTTCCTTTGCCCACCTTCTTTTGTTTGCCTCTTATTGACGTCCCAGTCAAGAGGCAAGC
AATCGACCTACCCAAATCAGGTCTAACAGTCTCCACACTGGCGAGCAAGTCACAAGGTTCCTTCGCGAAGAAAGCATCTG
GGTCTGAAGTAGGTGGCAATACACTTGGCTCAGTGGTCGTGTCACTCACAGACATCACCTGCTCGATGGTCGCAGACGAG
GGAAGGGCAGCAACATCTGAAACACCACGCTCTATGACACCGAGAGGTAGGTTGCCTGACGCCTGACACCCAATGAACTT
AGACGAGCGAGAGACAACAACATCCAAATCACCACACTCCTCGGCATCAAGTATTTGGCTAGACTCCCGAGGTGATGCAG
GCACTAAATCCGCAATCGAGATCGCTGGGGGGGACCTTCAGTTGTTCGACGGACAGAGGCAAAACCGGAGCCCCACACAG
GTCCCGAAGCTCAGGCATGATCTGCAGCACCGGAGTAACAACCACATTAGCGTCCGGTCCCTCAAAGCCTGGCAACGGCG
AGCTGGTGCTTGCACGAGAGGAGAAACAACCATGAAGCCCGGCTCCCCTCTCAAGCTCAAAGCTGACATCACGCACAACC
AAAGGGCACGACACATAAGCAGTTTGCAACACAGGTGGCGCCGGGGAGACCTGAGCCCCACACAGTTGTTCCATATTGTT
GTACTAGTAGTACTAGACTTGTTTGTTTTGGGTGCTGGCCTGGTGACCCACCCAACAGGGTATAAAACAGATTTACTCTG
AAGAATTAGCTGAGA-----------------------------------------------------------------
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----------------------------TTTGATTTCACCGGGATCTCACATTGTATA-------TATTACACTTACAAC
GTGAGATGCAATTCACTCAACCCGATATAATATTCCAATTCAAAGCCGGTTAGGCTAGAGCCCCGTCCCAGGCTTGGTTG
ATGCCTTTTCTCTAAAACATTATATTCCACATATATTTCGGATATATTTTCACACCGTTTCGGTGTATCCCA-CGTTCAG
TTCACGCAATTTTAGAAACATTGCAGAGACGTTTCACTTATATTTCACACGCAATTCCAATCCATTTTCACTGCAATACA
CGAATGTTTCACATTATTGTTTT---TTTTAACTAAAACCACGACAATTATTTTGAGACGGATGGAGTACTT--------
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>SNPs
SS-SS-SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------SS----S--------------S
------S----S-S--------S-S------------S-------S----S--------------------SSS------
-----------------------------------------------------SS-----------------S-------
-------SSSS-SSS-----------------------------------------------------------------
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--------------------------------------S--------------------------SS-------------
-----------------------------------------------------------S--------------------
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------------------------------------------------------------------S-------------
----------------------------S---------------------------------------------------
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----------------------------------------------------S------S--------------------
--------------------------S------------S----------------------------------------
------S-----------------S-----------S-----------S------------------------S------
----------S------------------------------------S-------------------S-----S------
---------------S----------SS--S-S-----------------------------------------------
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------------------S-------------------------------------------------------S-----
------------------------------------------------------S---------------S-------S-
---------SSSSS-SSSS--SSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
------SSSSSSSSSSSSSSSSSSSSSSSSS---S----------------------------------S--------S-
---------------------------------------S-------------------------S-----S--------
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---------------------------------------S---------------S----------------S---S---
---------------------------------S------------------------------------------S---
----------------S------------S--------S---S------------S----------S-------S-----
------------S------------------S----------S-----------S-------------------------
------------------------------S-SS-------S---------------SS--------------S------
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---------------------------------------------------S--------------S--S----------
------------------------------------S-------------S-------SS--------------------
----S---------S---------S--------S------S---S--------
>forward_699
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---------------------------------------GCAATGCATTGAGAGTGCCC---------------------
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>reverse_3240
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---------------------------------------AAAACGTCAAGAGCAACGGC---------------------
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