Multiple sequence alignment - TraesCS1D01G284500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G284500 chr1D 100.000 4025 0 0 1 4025 382727028 382723004 0.000000e+00 7433
1 TraesCS1D01G284500 chr1B 92.803 2918 123 29 505 3391 512637636 512634775 0.000000e+00 4145
2 TraesCS1D01G284500 chr1B 94.534 622 23 3 3404 4025 512634488 512633878 0.000000e+00 950
3 TraesCS1D01G284500 chr1B 94.118 153 8 1 420 571 512637787 512637635 8.700000e-57 231
4 TraesCS1D01G284500 chr1A 87.720 1588 100 41 420 1996 482780798 482779295 0.000000e+00 1764
5 TraesCS1D01G284500 chr1A 93.152 1139 52 13 1994 3122 482778652 482777530 0.000000e+00 1648
6 TraesCS1D01G284500 chr1A 94.071 624 25 5 3404 4025 482771833 482771220 0.000000e+00 937
7 TraesCS1D01G284500 chr1A 91.870 246 19 1 3146 3391 482772363 482772119 3.850000e-90 342
8 TraesCS1D01G284500 chr1A 93.252 163 10 1 261 422 177478665 177478503 5.200000e-59 239
9 TraesCS1D01G284500 chr2B 95.000 160 7 1 261 419 334345541 334345382 2.400000e-62 250
10 TraesCS1D01G284500 chr2B 93.865 163 7 3 263 424 334179018 334178858 4.020000e-60 243
11 TraesCS1D01G284500 chr2B 87.162 148 19 0 3 150 334345710 334345563 6.920000e-38 169
12 TraesCS1D01G284500 chr4B 95.833 120 4 1 149 267 9536845 9536964 4.110000e-45 193
13 TraesCS1D01G284500 chr5D 95.690 116 5 0 152 267 410442356 410442241 1.910000e-43 187
14 TraesCS1D01G284500 chr5D 88.793 116 13 0 152 267 380174092 380173977 4.190000e-30 143
15 TraesCS1D01G284500 chr3A 92.623 122 8 1 146 267 700248548 700248428 1.490000e-39 174
16 TraesCS1D01G284500 chr3A 98.438 64 1 0 1176 1239 605169029 605169092 3.290000e-21 113
17 TraesCS1D01G284500 chr2D 93.277 119 7 1 151 269 78679765 78679882 1.490000e-39 174
18 TraesCS1D01G284500 chrUn 92.308 117 9 0 151 267 88226018 88226134 2.490000e-37 167
19 TraesCS1D01G284500 chr6B 91.597 119 10 0 149 267 630453498 630453616 8.950000e-37 165
20 TraesCS1D01G284500 chr7B 86.555 119 16 0 149 267 707730238 707730120 9.080000e-27 132
21 TraesCS1D01G284500 chr5A 86.667 120 14 2 149 267 555536236 555536354 9.080000e-27 132
22 TraesCS1D01G284500 chr3D 96.923 65 2 0 1176 1240 462233703 462233767 4.250000e-20 110
23 TraesCS1D01G284500 chr3B 96.923 65 2 0 1176 1240 613802684 613802748 4.250000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G284500 chr1D 382723004 382727028 4024 True 7433.000000 7433 100.000000 1 4025 1 chr1D.!!$R1 4024
1 TraesCS1D01G284500 chr1B 512633878 512637787 3909 True 1775.333333 4145 93.818333 420 4025 3 chr1B.!!$R1 3605
2 TraesCS1D01G284500 chr1A 482777530 482780798 3268 True 1706.000000 1764 90.436000 420 3122 2 chr1A.!!$R3 2702
3 TraesCS1D01G284500 chr1A 482771220 482772363 1143 True 639.500000 937 92.970500 3146 4025 2 chr1A.!!$R2 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.036875 AGACCCAACTGTTAGCTGGC 59.963 55.0 0.0 0.0 30.17 4.85 F
332 333 0.036875 GACCCAACTGTTAGCTGGCT 59.963 55.0 0.0 0.0 30.17 4.75 F
336 337 0.242017 CAACTGTTAGCTGGCTTGGC 59.758 55.0 0.0 0.0 0.00 4.52 F
1082 1171 0.678366 TCTCTCTGACCCTGTCGCTC 60.678 60.0 0.0 0.0 34.95 5.03 F
1490 1598 0.105913 GCCTGCCCTACTCTCCTAGT 60.106 60.0 0.0 0.0 42.62 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1256 1347 0.320073 TTCGACGAAATGCCGGAGTT 60.320 50.0 5.05 0.0 0.00 3.01 R
1478 1586 0.752009 TGCGGGCACTAGGAGAGTAG 60.752 60.0 0.00 0.0 35.64 2.57 R
1479 1587 1.035932 GTGCGGGCACTAGGAGAGTA 61.036 60.0 16.14 0.0 43.12 2.59 R
2793 3566 1.246056 TTCTCTGCTGCAATGTGGCC 61.246 55.0 3.02 0.0 0.00 5.36 R
3338 4112 0.742505 ATGGCCACATTGCATCTTCG 59.257 50.0 8.16 0.0 32.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.941812 GACAACTCACCCAAGTGCG 59.058 57.895 0.00 0.00 44.16 5.34
19 20 0.531974 GACAACTCACCCAAGTGCGA 60.532 55.000 0.00 0.00 44.16 5.10
20 21 0.532862 ACAACTCACCCAAGTGCGAG 60.533 55.000 0.00 0.00 44.16 5.03
21 22 0.532862 CAACTCACCCAAGTGCGAGT 60.533 55.000 0.00 0.00 44.16 4.18
22 23 0.180406 AACTCACCCAAGTGCGAGTT 59.820 50.000 0.00 0.00 44.16 3.01
23 24 0.249911 ACTCACCCAAGTGCGAGTTC 60.250 55.000 0.00 0.00 44.16 3.01
24 25 0.951040 CTCACCCAAGTGCGAGTTCC 60.951 60.000 0.00 0.00 44.16 3.62
25 26 1.227823 CACCCAAGTGCGAGTTCCA 60.228 57.895 0.00 0.00 37.14 3.53
26 27 0.817634 CACCCAAGTGCGAGTTCCAA 60.818 55.000 0.00 0.00 37.14 3.53
27 28 0.535102 ACCCAAGTGCGAGTTCCAAG 60.535 55.000 0.00 0.00 0.00 3.61
28 29 0.250295 CCCAAGTGCGAGTTCCAAGA 60.250 55.000 0.00 0.00 0.00 3.02
29 30 1.593196 CCAAGTGCGAGTTCCAAGAA 58.407 50.000 0.00 0.00 0.00 2.52
30 31 1.532868 CCAAGTGCGAGTTCCAAGAAG 59.467 52.381 0.00 0.00 0.00 2.85
31 32 1.069636 CAAGTGCGAGTTCCAAGAAGC 60.070 52.381 0.00 0.00 0.00 3.86
32 33 0.106708 AGTGCGAGTTCCAAGAAGCA 59.893 50.000 0.00 0.00 0.00 3.91
33 34 0.514691 GTGCGAGTTCCAAGAAGCAG 59.485 55.000 0.00 0.00 35.15 4.24
34 35 1.230635 TGCGAGTTCCAAGAAGCAGC 61.231 55.000 0.00 0.00 0.00 5.25
35 36 1.230635 GCGAGTTCCAAGAAGCAGCA 61.231 55.000 0.00 0.00 0.00 4.41
36 37 0.795085 CGAGTTCCAAGAAGCAGCAG 59.205 55.000 0.00 0.00 0.00 4.24
37 38 0.520847 GAGTTCCAAGAAGCAGCAGC 59.479 55.000 0.00 0.00 42.56 5.25
56 57 4.156622 CGCTAGTGCCGTCGACGA 62.157 66.667 37.65 17.67 43.02 4.20
57 58 2.277373 GCTAGTGCCGTCGACGAG 60.277 66.667 37.65 26.24 43.02 4.18
58 59 2.277373 CTAGTGCCGTCGACGAGC 60.277 66.667 37.65 33.90 43.02 5.03
59 60 4.156622 TAGTGCCGTCGACGAGCG 62.157 66.667 37.65 22.43 43.02 5.03
71 72 4.771356 CGAGCGGCCGAGACGAAA 62.771 66.667 33.48 0.00 35.20 3.46
72 73 3.179939 GAGCGGCCGAGACGAAAC 61.180 66.667 33.48 8.41 35.20 2.78
73 74 3.628280 GAGCGGCCGAGACGAAACT 62.628 63.158 33.48 14.13 35.20 2.66
74 75 3.479269 GCGGCCGAGACGAAACTG 61.479 66.667 33.48 0.00 35.20 3.16
75 76 2.257371 CGGCCGAGACGAAACTGA 59.743 61.111 24.07 0.00 35.20 3.41
76 77 2.087009 CGGCCGAGACGAAACTGAC 61.087 63.158 24.07 0.00 35.20 3.51
77 78 1.289380 GGCCGAGACGAAACTGACT 59.711 57.895 0.00 0.00 0.00 3.41
78 79 1.009389 GGCCGAGACGAAACTGACTG 61.009 60.000 0.00 0.00 0.00 3.51
79 80 0.318784 GCCGAGACGAAACTGACTGT 60.319 55.000 0.00 0.00 0.00 3.55
80 81 1.687628 CCGAGACGAAACTGACTGTC 58.312 55.000 0.00 0.00 0.00 3.51
81 82 1.666311 CCGAGACGAAACTGACTGTCC 60.666 57.143 5.17 0.00 31.75 4.02
82 83 1.666311 CGAGACGAAACTGACTGTCCC 60.666 57.143 5.17 0.00 31.75 4.46
83 84 1.340248 GAGACGAAACTGACTGTCCCA 59.660 52.381 5.17 0.00 31.75 4.37
84 85 1.341531 AGACGAAACTGACTGTCCCAG 59.658 52.381 5.17 0.00 37.52 4.45
85 86 0.393077 ACGAAACTGACTGTCCCAGG 59.607 55.000 5.17 0.00 35.51 4.45
86 87 0.951040 CGAAACTGACTGTCCCAGGC 60.951 60.000 5.17 0.00 40.49 4.85
87 88 0.398318 GAAACTGACTGTCCCAGGCT 59.602 55.000 5.17 0.00 40.76 4.58
88 89 0.846693 AAACTGACTGTCCCAGGCTT 59.153 50.000 5.17 0.00 40.76 4.35
89 90 0.846693 AACTGACTGTCCCAGGCTTT 59.153 50.000 5.17 0.00 40.76 3.51
90 91 0.846693 ACTGACTGTCCCAGGCTTTT 59.153 50.000 5.17 0.00 40.76 2.27
91 92 2.054799 ACTGACTGTCCCAGGCTTTTA 58.945 47.619 5.17 0.00 40.76 1.52
92 93 2.441750 ACTGACTGTCCCAGGCTTTTAA 59.558 45.455 5.17 0.00 40.76 1.52
93 94 3.117663 ACTGACTGTCCCAGGCTTTTAAA 60.118 43.478 5.17 0.00 40.76 1.52
94 95 3.888930 CTGACTGTCCCAGGCTTTTAAAA 59.111 43.478 5.17 0.00 40.76 1.52
95 96 4.479158 TGACTGTCCCAGGCTTTTAAAAT 58.521 39.130 5.17 0.00 40.76 1.82
96 97 4.522789 TGACTGTCCCAGGCTTTTAAAATC 59.477 41.667 5.17 0.00 40.76 2.17
97 98 3.506067 ACTGTCCCAGGCTTTTAAAATCG 59.494 43.478 0.09 0.00 35.51 3.34
98 99 3.756434 CTGTCCCAGGCTTTTAAAATCGA 59.244 43.478 0.09 0.00 0.00 3.59
99 100 3.504520 TGTCCCAGGCTTTTAAAATCGAC 59.495 43.478 0.09 1.62 0.00 4.20
100 101 3.756963 GTCCCAGGCTTTTAAAATCGACT 59.243 43.478 0.09 0.00 0.00 4.18
101 102 4.217767 GTCCCAGGCTTTTAAAATCGACTT 59.782 41.667 0.09 0.00 0.00 3.01
102 103 4.457949 TCCCAGGCTTTTAAAATCGACTTC 59.542 41.667 0.09 0.00 0.00 3.01
103 104 4.217550 CCCAGGCTTTTAAAATCGACTTCA 59.782 41.667 0.09 0.00 0.00 3.02
104 105 5.154222 CCAGGCTTTTAAAATCGACTTCAC 58.846 41.667 0.09 0.00 0.00 3.18
105 106 5.048713 CCAGGCTTTTAAAATCGACTTCACT 60.049 40.000 0.09 0.00 0.00 3.41
106 107 6.080406 CAGGCTTTTAAAATCGACTTCACTC 58.920 40.000 0.09 0.00 0.00 3.51
107 108 5.998363 AGGCTTTTAAAATCGACTTCACTCT 59.002 36.000 0.09 0.00 0.00 3.24
108 109 6.486993 AGGCTTTTAAAATCGACTTCACTCTT 59.513 34.615 0.09 0.00 0.00 2.85
109 110 7.013369 AGGCTTTTAAAATCGACTTCACTCTTT 59.987 33.333 0.09 0.00 0.00 2.52
110 111 7.648112 GGCTTTTAAAATCGACTTCACTCTTTT 59.352 33.333 0.09 0.00 0.00 2.27
111 112 8.682895 GCTTTTAAAATCGACTTCACTCTTTTC 58.317 33.333 0.09 0.00 0.00 2.29
112 113 9.716507 CTTTTAAAATCGACTTCACTCTTTTCA 57.283 29.630 0.09 0.00 0.00 2.69
113 114 9.498307 TTTTAAAATCGACTTCACTCTTTTCAC 57.502 29.630 0.00 0.00 0.00 3.18
114 115 6.677781 AAAATCGACTTCACTCTTTTCACA 57.322 33.333 0.00 0.00 0.00 3.58
115 116 5.659048 AATCGACTTCACTCTTTTCACAC 57.341 39.130 0.00 0.00 0.00 3.82
116 117 4.118093 TCGACTTCACTCTTTTCACACA 57.882 40.909 0.00 0.00 0.00 3.72
117 118 4.500127 TCGACTTCACTCTTTTCACACAA 58.500 39.130 0.00 0.00 0.00 3.33
118 119 4.328983 TCGACTTCACTCTTTTCACACAAC 59.671 41.667 0.00 0.00 0.00 3.32
119 120 4.494199 CGACTTCACTCTTTTCACACAACC 60.494 45.833 0.00 0.00 0.00 3.77
120 121 4.331968 ACTTCACTCTTTTCACACAACCA 58.668 39.130 0.00 0.00 0.00 3.67
121 122 4.764823 ACTTCACTCTTTTCACACAACCAA 59.235 37.500 0.00 0.00 0.00 3.67
122 123 5.418840 ACTTCACTCTTTTCACACAACCAAT 59.581 36.000 0.00 0.00 0.00 3.16
123 124 5.499139 TCACTCTTTTCACACAACCAATC 57.501 39.130 0.00 0.00 0.00 2.67
124 125 5.192927 TCACTCTTTTCACACAACCAATCT 58.807 37.500 0.00 0.00 0.00 2.40
125 126 6.353323 TCACTCTTTTCACACAACCAATCTA 58.647 36.000 0.00 0.00 0.00 1.98
126 127 6.260050 TCACTCTTTTCACACAACCAATCTAC 59.740 38.462 0.00 0.00 0.00 2.59
127 128 6.038161 CACTCTTTTCACACAACCAATCTACA 59.962 38.462 0.00 0.00 0.00 2.74
128 129 6.260936 ACTCTTTTCACACAACCAATCTACAG 59.739 38.462 0.00 0.00 0.00 2.74
129 130 6.353323 TCTTTTCACACAACCAATCTACAGA 58.647 36.000 0.00 0.00 0.00 3.41
130 131 6.826231 TCTTTTCACACAACCAATCTACAGAA 59.174 34.615 0.00 0.00 0.00 3.02
131 132 6.371809 TTTCACACAACCAATCTACAGAAC 57.628 37.500 0.00 0.00 0.00 3.01
132 133 4.385825 TCACACAACCAATCTACAGAACC 58.614 43.478 0.00 0.00 0.00 3.62
133 134 3.186409 CACACAACCAATCTACAGAACCG 59.814 47.826 0.00 0.00 0.00 4.44
134 135 2.742053 CACAACCAATCTACAGAACCGG 59.258 50.000 0.00 0.00 0.00 5.28
135 136 2.370849 ACAACCAATCTACAGAACCGGT 59.629 45.455 0.00 0.00 0.00 5.28
136 137 3.181448 ACAACCAATCTACAGAACCGGTT 60.181 43.478 22.50 22.50 35.58 4.44
137 138 3.782656 ACCAATCTACAGAACCGGTTT 57.217 42.857 23.22 8.42 0.00 3.27
138 139 4.094830 ACCAATCTACAGAACCGGTTTT 57.905 40.909 23.22 13.91 0.00 2.43
139 140 3.818773 ACCAATCTACAGAACCGGTTTTG 59.181 43.478 30.47 30.47 0.00 2.44
140 141 3.190535 CCAATCTACAGAACCGGTTTTGG 59.809 47.826 33.63 28.36 0.00 3.28
141 142 4.069304 CAATCTACAGAACCGGTTTTGGA 58.931 43.478 33.63 27.80 0.00 3.53
142 143 3.116079 TCTACAGAACCGGTTTTGGAC 57.884 47.619 33.63 17.15 0.00 4.02
143 144 2.148768 CTACAGAACCGGTTTTGGACC 58.851 52.381 33.63 16.47 45.55 4.46
211 212 9.911788 AAGTTCATAGGAATACAATGAATGTCT 57.088 29.630 0.00 0.00 42.70 3.41
212 213 9.334947 AGTTCATAGGAATACAATGAATGTCTG 57.665 33.333 0.00 0.00 42.70 3.51
213 214 8.562892 GTTCATAGGAATACAATGAATGTCTGG 58.437 37.037 0.00 0.00 42.70 3.86
214 215 7.805163 TCATAGGAATACAATGAATGTCTGGT 58.195 34.615 0.00 0.00 42.70 4.00
215 216 7.716560 TCATAGGAATACAATGAATGTCTGGTG 59.283 37.037 0.00 0.00 42.70 4.17
216 217 5.195940 AGGAATACAATGAATGTCTGGTGG 58.804 41.667 0.00 0.00 42.70 4.61
217 218 4.339247 GGAATACAATGAATGTCTGGTGGG 59.661 45.833 0.00 0.00 42.70 4.61
218 219 2.978156 ACAATGAATGTCTGGTGGGT 57.022 45.000 0.00 0.00 37.96 4.51
219 220 3.243359 ACAATGAATGTCTGGTGGGTT 57.757 42.857 0.00 0.00 37.96 4.11
220 221 3.575805 ACAATGAATGTCTGGTGGGTTT 58.424 40.909 0.00 0.00 37.96 3.27
221 222 4.735369 ACAATGAATGTCTGGTGGGTTTA 58.265 39.130 0.00 0.00 37.96 2.01
222 223 5.332743 ACAATGAATGTCTGGTGGGTTTAT 58.667 37.500 0.00 0.00 37.96 1.40
223 224 6.489603 ACAATGAATGTCTGGTGGGTTTATA 58.510 36.000 0.00 0.00 37.96 0.98
224 225 6.951198 ACAATGAATGTCTGGTGGGTTTATAA 59.049 34.615 0.00 0.00 37.96 0.98
225 226 7.122650 ACAATGAATGTCTGGTGGGTTTATAAG 59.877 37.037 0.00 0.00 37.96 1.73
226 227 4.947388 TGAATGTCTGGTGGGTTTATAAGC 59.053 41.667 0.00 0.00 0.00 3.09
249 250 6.712241 CCATAAGTGGCGTTCATAATCTAG 57.288 41.667 0.00 0.00 39.01 2.43
250 251 6.223852 CCATAAGTGGCGTTCATAATCTAGT 58.776 40.000 0.00 0.00 39.01 2.57
251 252 6.366332 CCATAAGTGGCGTTCATAATCTAGTC 59.634 42.308 0.00 0.00 39.01 2.59
252 253 4.323553 AGTGGCGTTCATAATCTAGTCC 57.676 45.455 0.00 0.00 0.00 3.85
253 254 3.050619 GTGGCGTTCATAATCTAGTCCG 58.949 50.000 0.00 0.00 0.00 4.79
254 255 2.953648 TGGCGTTCATAATCTAGTCCGA 59.046 45.455 0.00 0.00 0.00 4.55
255 256 3.382227 TGGCGTTCATAATCTAGTCCGAA 59.618 43.478 0.00 0.00 0.00 4.30
256 257 4.142116 TGGCGTTCATAATCTAGTCCGAAA 60.142 41.667 0.00 0.00 0.00 3.46
257 258 4.444720 GGCGTTCATAATCTAGTCCGAAAG 59.555 45.833 0.00 0.00 0.00 2.62
258 259 4.085004 GCGTTCATAATCTAGTCCGAAAGC 60.085 45.833 0.00 0.00 32.43 3.51
259 260 4.146616 CGTTCATAATCTAGTCCGAAAGCG 59.853 45.833 0.00 0.00 37.24 4.68
260 261 4.913335 TCATAATCTAGTCCGAAAGCGT 57.087 40.909 0.00 0.00 35.23 5.07
261 262 4.607955 TCATAATCTAGTCCGAAAGCGTG 58.392 43.478 0.00 0.00 35.23 5.34
262 263 4.097437 TCATAATCTAGTCCGAAAGCGTGT 59.903 41.667 0.00 0.00 35.23 4.49
263 264 3.314541 AATCTAGTCCGAAAGCGTGTT 57.685 42.857 0.00 0.00 35.23 3.32
264 265 2.806608 TCTAGTCCGAAAGCGTGTTT 57.193 45.000 0.00 0.00 35.23 2.83
265 266 3.921119 TCTAGTCCGAAAGCGTGTTTA 57.079 42.857 0.00 0.00 35.23 2.01
266 267 3.829948 TCTAGTCCGAAAGCGTGTTTAG 58.170 45.455 0.00 0.00 35.23 1.85
267 268 1.792006 AGTCCGAAAGCGTGTTTAGG 58.208 50.000 5.54 5.54 35.23 2.69
268 269 0.165295 GTCCGAAAGCGTGTTTAGGC 59.835 55.000 6.65 0.00 37.95 3.93
269 270 0.952010 TCCGAAAGCGTGTTTAGGCC 60.952 55.000 0.00 0.00 38.43 5.19
270 271 1.500396 CGAAAGCGTGTTTAGGCCC 59.500 57.895 0.00 0.00 38.43 5.80
271 272 1.231958 CGAAAGCGTGTTTAGGCCCA 61.232 55.000 0.00 0.00 38.43 5.36
272 273 0.521735 GAAAGCGTGTTTAGGCCCAG 59.478 55.000 0.00 0.00 38.43 4.45
273 274 0.109723 AAAGCGTGTTTAGGCCCAGA 59.890 50.000 0.00 0.00 38.43 3.86
274 275 0.605589 AAGCGTGTTTAGGCCCAGAC 60.606 55.000 0.00 0.00 38.43 3.51
275 276 2.038837 GCGTGTTTAGGCCCAGACC 61.039 63.158 0.00 0.00 0.00 3.85
276 277 1.376812 CGTGTTTAGGCCCAGACCC 60.377 63.158 0.00 0.00 0.00 4.46
277 278 1.765074 GTGTTTAGGCCCAGACCCA 59.235 57.895 0.00 0.00 0.00 4.51
278 279 0.111639 GTGTTTAGGCCCAGACCCAA 59.888 55.000 0.00 0.00 0.00 4.12
279 280 0.111639 TGTTTAGGCCCAGACCCAAC 59.888 55.000 0.00 0.00 0.00 3.77
280 281 0.611062 GTTTAGGCCCAGACCCAACC 60.611 60.000 0.00 0.00 0.00 3.77
281 282 1.068943 TTTAGGCCCAGACCCAACCA 61.069 55.000 0.00 0.00 0.00 3.67
282 283 0.849094 TTAGGCCCAGACCCAACCAT 60.849 55.000 0.00 0.00 0.00 3.55
283 284 0.045008 TAGGCCCAGACCCAACCATA 59.955 55.000 0.00 0.00 0.00 2.74
284 285 0.849094 AGGCCCAGACCCAACCATAA 60.849 55.000 0.00 0.00 0.00 1.90
285 286 0.683179 GGCCCAGACCCAACCATAAC 60.683 60.000 0.00 0.00 0.00 1.89
286 287 0.331616 GCCCAGACCCAACCATAACT 59.668 55.000 0.00 0.00 0.00 2.24
287 288 1.562475 GCCCAGACCCAACCATAACTA 59.438 52.381 0.00 0.00 0.00 2.24
288 289 2.174854 GCCCAGACCCAACCATAACTAT 59.825 50.000 0.00 0.00 0.00 2.12
289 290 3.747708 GCCCAGACCCAACCATAACTATC 60.748 52.174 0.00 0.00 0.00 2.08
290 291 3.716872 CCCAGACCCAACCATAACTATCT 59.283 47.826 0.00 0.00 0.00 1.98
291 292 4.166144 CCCAGACCCAACCATAACTATCTT 59.834 45.833 0.00 0.00 0.00 2.40
292 293 5.340027 CCCAGACCCAACCATAACTATCTTT 60.340 44.000 0.00 0.00 0.00 2.52
293 294 6.187682 CCAGACCCAACCATAACTATCTTTT 58.812 40.000 0.00 0.00 0.00 2.27
294 295 6.318900 CCAGACCCAACCATAACTATCTTTTC 59.681 42.308 0.00 0.00 0.00 2.29
295 296 6.318900 CAGACCCAACCATAACTATCTTTTCC 59.681 42.308 0.00 0.00 0.00 3.13
296 297 6.011981 AGACCCAACCATAACTATCTTTTCCA 60.012 38.462 0.00 0.00 0.00 3.53
297 298 5.949952 ACCCAACCATAACTATCTTTTCCAC 59.050 40.000 0.00 0.00 0.00 4.02
298 299 5.359860 CCCAACCATAACTATCTTTTCCACC 59.640 44.000 0.00 0.00 0.00 4.61
299 300 5.949354 CCAACCATAACTATCTTTTCCACCA 59.051 40.000 0.00 0.00 0.00 4.17
300 301 6.607198 CCAACCATAACTATCTTTTCCACCAT 59.393 38.462 0.00 0.00 0.00 3.55
301 302 7.777910 CCAACCATAACTATCTTTTCCACCATA 59.222 37.037 0.00 0.00 0.00 2.74
302 303 9.184523 CAACCATAACTATCTTTTCCACCATAA 57.815 33.333 0.00 0.00 0.00 1.90
303 304 9.762381 AACCATAACTATCTTTTCCACCATAAA 57.238 29.630 0.00 0.00 0.00 1.40
304 305 9.762381 ACCATAACTATCTTTTCCACCATAAAA 57.238 29.630 0.00 0.00 0.00 1.52
307 308 9.762381 ATAACTATCTTTTCCACCATAAAACCA 57.238 29.630 0.00 0.00 0.00 3.67
308 309 8.485578 AACTATCTTTTCCACCATAAAACCAA 57.514 30.769 0.00 0.00 0.00 3.67
309 310 8.485578 ACTATCTTTTCCACCATAAAACCAAA 57.514 30.769 0.00 0.00 0.00 3.28
310 311 8.364894 ACTATCTTTTCCACCATAAAACCAAAC 58.635 33.333 0.00 0.00 0.00 2.93
311 312 5.919755 TCTTTTCCACCATAAAACCAAACC 58.080 37.500 0.00 0.00 0.00 3.27
312 313 5.425539 TCTTTTCCACCATAAAACCAAACCA 59.574 36.000 0.00 0.00 0.00 3.67
313 314 4.946478 TTCCACCATAAAACCAAACCAG 57.054 40.909 0.00 0.00 0.00 4.00
314 315 4.186077 TCCACCATAAAACCAAACCAGA 57.814 40.909 0.00 0.00 0.00 3.86
315 316 3.892588 TCCACCATAAAACCAAACCAGAC 59.107 43.478 0.00 0.00 0.00 3.51
316 317 3.006430 CCACCATAAAACCAAACCAGACC 59.994 47.826 0.00 0.00 0.00 3.85
317 318 3.006430 CACCATAAAACCAAACCAGACCC 59.994 47.826 0.00 0.00 0.00 4.46
318 319 3.235200 CCATAAAACCAAACCAGACCCA 58.765 45.455 0.00 0.00 0.00 4.51
319 320 3.643792 CCATAAAACCAAACCAGACCCAA 59.356 43.478 0.00 0.00 0.00 4.12
320 321 4.502431 CCATAAAACCAAACCAGACCCAAC 60.502 45.833 0.00 0.00 0.00 3.77
321 322 2.543037 AAACCAAACCAGACCCAACT 57.457 45.000 0.00 0.00 0.00 3.16
322 323 1.775385 AACCAAACCAGACCCAACTG 58.225 50.000 0.00 0.00 37.61 3.16
323 324 0.629058 ACCAAACCAGACCCAACTGT 59.371 50.000 0.00 0.00 36.30 3.55
324 325 1.006639 ACCAAACCAGACCCAACTGTT 59.993 47.619 0.00 0.00 36.30 3.16
325 326 2.242708 ACCAAACCAGACCCAACTGTTA 59.757 45.455 0.00 0.00 36.30 2.41
326 327 2.884639 CCAAACCAGACCCAACTGTTAG 59.115 50.000 0.00 0.00 36.30 2.34
327 328 2.271944 AACCAGACCCAACTGTTAGC 57.728 50.000 0.00 0.00 36.30 3.09
328 329 1.435256 ACCAGACCCAACTGTTAGCT 58.565 50.000 0.00 0.00 36.30 3.32
329 330 1.072331 ACCAGACCCAACTGTTAGCTG 59.928 52.381 0.00 0.00 36.30 4.24
330 331 1.611673 CCAGACCCAACTGTTAGCTGG 60.612 57.143 0.00 12.53 36.30 4.85
331 332 0.036875 AGACCCAACTGTTAGCTGGC 59.963 55.000 0.00 0.00 30.17 4.85
332 333 0.036875 GACCCAACTGTTAGCTGGCT 59.963 55.000 0.00 0.00 30.17 4.75
333 334 0.478507 ACCCAACTGTTAGCTGGCTT 59.521 50.000 0.00 0.00 30.17 4.35
334 335 0.883833 CCCAACTGTTAGCTGGCTTG 59.116 55.000 0.00 0.00 30.17 4.01
335 336 0.883833 CCAACTGTTAGCTGGCTTGG 59.116 55.000 0.00 0.00 0.00 3.61
336 337 0.242017 CAACTGTTAGCTGGCTTGGC 59.758 55.000 0.00 0.00 0.00 4.52
347 348 3.520623 GGCTTGGCCCATATCAACT 57.479 52.632 0.00 0.00 44.06 3.16
348 349 1.322442 GGCTTGGCCCATATCAACTC 58.678 55.000 0.00 0.00 44.06 3.01
349 350 0.947244 GCTTGGCCCATATCAACTCG 59.053 55.000 0.00 0.00 0.00 4.18
350 351 1.475034 GCTTGGCCCATATCAACTCGA 60.475 52.381 0.00 0.00 0.00 4.04
351 352 2.917933 CTTGGCCCATATCAACTCGAA 58.082 47.619 0.00 0.00 0.00 3.71
352 353 2.325583 TGGCCCATATCAACTCGAAC 57.674 50.000 0.00 0.00 0.00 3.95
353 354 1.134220 TGGCCCATATCAACTCGAACC 60.134 52.381 0.00 0.00 0.00 3.62
354 355 1.134220 GGCCCATATCAACTCGAACCA 60.134 52.381 0.00 0.00 0.00 3.67
355 356 2.639065 GCCCATATCAACTCGAACCAA 58.361 47.619 0.00 0.00 0.00 3.67
356 357 3.214328 GCCCATATCAACTCGAACCAAT 58.786 45.455 0.00 0.00 0.00 3.16
357 358 3.632145 GCCCATATCAACTCGAACCAATT 59.368 43.478 0.00 0.00 0.00 2.32
358 359 4.819630 GCCCATATCAACTCGAACCAATTA 59.180 41.667 0.00 0.00 0.00 1.40
359 360 5.298276 GCCCATATCAACTCGAACCAATTAA 59.702 40.000 0.00 0.00 0.00 1.40
360 361 6.183360 GCCCATATCAACTCGAACCAATTAAA 60.183 38.462 0.00 0.00 0.00 1.52
361 362 7.193595 CCCATATCAACTCGAACCAATTAAAC 58.806 38.462 0.00 0.00 0.00 2.01
362 363 7.193595 CCATATCAACTCGAACCAATTAAACC 58.806 38.462 0.00 0.00 0.00 3.27
363 364 5.638596 ATCAACTCGAACCAATTAAACCC 57.361 39.130 0.00 0.00 0.00 4.11
364 365 4.462133 TCAACTCGAACCAATTAAACCCA 58.538 39.130 0.00 0.00 0.00 4.51
365 366 5.074115 TCAACTCGAACCAATTAAACCCAT 58.926 37.500 0.00 0.00 0.00 4.00
366 367 6.239396 TCAACTCGAACCAATTAAACCCATA 58.761 36.000 0.00 0.00 0.00 2.74
367 368 6.715718 TCAACTCGAACCAATTAAACCCATAA 59.284 34.615 0.00 0.00 0.00 1.90
368 369 6.505044 ACTCGAACCAATTAAACCCATAAC 57.495 37.500 0.00 0.00 0.00 1.89
369 370 6.005198 ACTCGAACCAATTAAACCCATAACA 58.995 36.000 0.00 0.00 0.00 2.41
370 371 6.150474 ACTCGAACCAATTAAACCCATAACAG 59.850 38.462 0.00 0.00 0.00 3.16
371 372 6.239396 TCGAACCAATTAAACCCATAACAGA 58.761 36.000 0.00 0.00 0.00 3.41
372 373 6.715718 TCGAACCAATTAAACCCATAACAGAA 59.284 34.615 0.00 0.00 0.00 3.02
373 374 7.230913 TCGAACCAATTAAACCCATAACAGAAA 59.769 33.333 0.00 0.00 0.00 2.52
374 375 7.868415 CGAACCAATTAAACCCATAACAGAAAA 59.132 33.333 0.00 0.00 0.00 2.29
375 376 8.896320 AACCAATTAAACCCATAACAGAAAAC 57.104 30.769 0.00 0.00 0.00 2.43
376 377 7.446769 ACCAATTAAACCCATAACAGAAAACC 58.553 34.615 0.00 0.00 0.00 3.27
377 378 7.071321 ACCAATTAAACCCATAACAGAAAACCA 59.929 33.333 0.00 0.00 0.00 3.67
378 379 7.934120 CCAATTAAACCCATAACAGAAAACCAA 59.066 33.333 0.00 0.00 0.00 3.67
379 380 9.331282 CAATTAAACCCATAACAGAAAACCAAA 57.669 29.630 0.00 0.00 0.00 3.28
380 381 8.896320 ATTAAACCCATAACAGAAAACCAAAC 57.104 30.769 0.00 0.00 0.00 2.93
381 382 4.948341 ACCCATAACAGAAAACCAAACC 57.052 40.909 0.00 0.00 0.00 3.27
382 383 4.290942 ACCCATAACAGAAAACCAAACCA 58.709 39.130 0.00 0.00 0.00 3.67
383 384 4.717280 ACCCATAACAGAAAACCAAACCAA 59.283 37.500 0.00 0.00 0.00 3.67
384 385 5.368230 ACCCATAACAGAAAACCAAACCAAT 59.632 36.000 0.00 0.00 0.00 3.16
385 386 6.126623 ACCCATAACAGAAAACCAAACCAATT 60.127 34.615 0.00 0.00 0.00 2.32
386 387 6.770303 CCCATAACAGAAAACCAAACCAATTT 59.230 34.615 0.00 0.00 0.00 1.82
387 388 7.934120 CCCATAACAGAAAACCAAACCAATTTA 59.066 33.333 0.00 0.00 0.00 1.40
388 389 9.331282 CCATAACAGAAAACCAAACCAATTTAA 57.669 29.630 0.00 0.00 0.00 1.52
390 391 7.618502 AACAGAAAACCAAACCAATTTAACC 57.381 32.000 0.00 0.00 0.00 2.85
391 392 5.813157 ACAGAAAACCAAACCAATTTAACCG 59.187 36.000 0.00 0.00 0.00 4.44
392 393 5.235401 CAGAAAACCAAACCAATTTAACCGG 59.765 40.000 0.00 0.00 0.00 5.28
393 394 4.757019 AAACCAAACCAATTTAACCGGT 57.243 36.364 0.00 0.00 33.32 5.28
394 395 4.757019 AACCAAACCAATTTAACCGGTT 57.243 36.364 25.64 25.64 44.90 4.44
395 396 5.866159 AACCAAACCAATTTAACCGGTTA 57.134 34.783 23.17 23.17 42.18 2.85
396 397 5.866159 ACCAAACCAATTTAACCGGTTAA 57.134 34.783 31.25 31.25 42.18 2.01
397 398 6.422344 ACCAAACCAATTTAACCGGTTAAT 57.578 33.333 34.14 21.20 42.18 1.40
398 399 6.224584 ACCAAACCAATTTAACCGGTTAATG 58.775 36.000 34.14 28.86 42.18 1.90
399 400 6.041751 ACCAAACCAATTTAACCGGTTAATGA 59.958 34.615 34.14 23.49 42.18 2.57
400 401 6.929606 CCAAACCAATTTAACCGGTTAATGAA 59.070 34.615 34.14 22.84 42.18 2.57
401 402 7.441458 CCAAACCAATTTAACCGGTTAATGAAA 59.559 33.333 34.14 24.00 42.18 2.69
402 403 8.827677 CAAACCAATTTAACCGGTTAATGAAAA 58.172 29.630 34.14 23.67 42.18 2.29
403 404 8.959705 AACCAATTTAACCGGTTAATGAAAAA 57.040 26.923 34.14 23.01 41.22 1.94
404 405 8.367943 ACCAATTTAACCGGTTAATGAAAAAC 57.632 30.769 34.14 0.00 35.27 2.43
405 406 7.441760 ACCAATTTAACCGGTTAATGAAAAACC 59.558 33.333 34.14 0.00 42.52 3.27
406 407 7.441458 CCAATTTAACCGGTTAATGAAAAACCA 59.559 33.333 34.14 19.58 45.59 3.67
407 408 8.994170 CAATTTAACCGGTTAATGAAAAACCAT 58.006 29.630 34.14 20.75 45.59 3.55
408 409 9.562408 AATTTAACCGGTTAATGAAAAACCATT 57.438 25.926 34.14 24.34 45.59 3.16
409 410 8.959705 TTTAACCGGTTAATGAAAAACCATTT 57.040 26.923 34.14 4.69 45.59 2.32
410 411 8.590719 TTAACCGGTTAATGAAAAACCATTTC 57.409 30.769 31.25 0.00 45.59 2.17
411 412 5.543714 ACCGGTTAATGAAAAACCATTTCC 58.456 37.500 0.00 0.00 45.59 3.13
412 413 5.070580 ACCGGTTAATGAAAAACCATTTCCA 59.929 36.000 0.00 0.00 45.59 3.53
413 414 5.637387 CCGGTTAATGAAAAACCATTTCCAG 59.363 40.000 0.00 0.00 45.59 3.86
414 415 6.451393 CGGTTAATGAAAAACCATTTCCAGA 58.549 36.000 5.89 0.00 45.59 3.86
415 416 7.096551 CGGTTAATGAAAAACCATTTCCAGAT 58.903 34.615 5.89 0.00 45.59 2.90
416 417 7.602265 CGGTTAATGAAAAACCATTTCCAGATT 59.398 33.333 5.89 0.00 45.59 2.40
417 418 9.283768 GGTTAATGAAAAACCATTTCCAGATTT 57.716 29.630 0.19 0.00 44.83 2.17
559 630 7.806690 TCTACTATTTGTGCAGCTAAAAACAG 58.193 34.615 0.00 0.00 0.00 3.16
649 727 6.437162 CCCCTGTTAATTTTCATTTCCAGAGA 59.563 38.462 0.00 0.00 0.00 3.10
699 777 3.245990 GCTTGTTCAATTCAACTGCCAAC 59.754 43.478 0.00 0.00 0.00 3.77
716 794 7.500141 ACTGCCAACTATTTTTGAAGTGATTT 58.500 30.769 0.00 0.00 0.00 2.17
717 795 7.439056 ACTGCCAACTATTTTTGAAGTGATTTG 59.561 33.333 0.00 0.00 0.00 2.32
725 803 9.323985 CTATTTTTGAAGTGATTTGGTTTCCAA 57.676 29.630 0.00 0.00 42.29 3.53
738 816 4.440880 TGGTTTCCAAAGTTGCAAATCAG 58.559 39.130 0.00 0.00 0.00 2.90
766 844 1.066573 GTCAGTGGATGTGGAGTGAGG 60.067 57.143 0.00 0.00 0.00 3.86
783 861 4.286032 AGTGAGGGCAAATAGTCTTACACA 59.714 41.667 0.00 0.00 0.00 3.72
938 1018 1.106944 ACCAAACAAACGGAGCCTGG 61.107 55.000 0.00 0.00 0.00 4.45
939 1019 1.007387 CAAACAAACGGAGCCTGGC 60.007 57.895 11.65 11.65 0.00 4.85
940 1020 1.454847 AAACAAACGGAGCCTGGCA 60.455 52.632 22.65 0.00 0.00 4.92
941 1021 1.455383 AAACAAACGGAGCCTGGCAG 61.455 55.000 22.65 7.75 0.00 4.85
1069 1158 3.609256 TGCTCAGGTATCCATCTCTCT 57.391 47.619 0.00 0.00 0.00 3.10
1071 1160 3.117360 TGCTCAGGTATCCATCTCTCTGA 60.117 47.826 0.00 0.00 0.00 3.27
1082 1171 0.678366 TCTCTCTGACCCTGTCGCTC 60.678 60.000 0.00 0.00 34.95 5.03
1095 1185 4.227134 CGCTCCACCCATCTCCCG 62.227 72.222 0.00 0.00 0.00 5.14
1098 1188 1.221840 CTCCACCCATCTCCCGTTG 59.778 63.158 0.00 0.00 0.00 4.10
1147 1237 4.122149 CCCACGGGCCATGGCTAA 62.122 66.667 34.70 0.00 41.60 3.09
1149 1239 2.828549 CACGGGCCATGGCTAACC 60.829 66.667 34.70 25.80 41.60 2.85
1176 1266 4.452733 CCCCTTCCCACGTCGCTC 62.453 72.222 0.00 0.00 0.00 5.03
1177 1267 4.796231 CCCTTCCCACGTCGCTCG 62.796 72.222 0.00 0.00 46.00 5.03
1203 1294 1.218047 GATGGTGTCGCAGCTGGTA 59.782 57.895 17.12 0.00 32.61 3.25
1256 1347 1.762957 GGTAGCTTCCTGCCTCATGTA 59.237 52.381 1.39 0.00 44.23 2.29
1329 1420 1.064979 GCCAGGGAATTTCGGTCCTTA 60.065 52.381 0.00 0.00 35.33 2.69
1330 1421 2.640184 CCAGGGAATTTCGGTCCTTAC 58.360 52.381 0.00 0.00 35.33 2.34
1339 1430 6.750501 GGAATTTCGGTCCTTACTTTTTATGC 59.249 38.462 0.00 0.00 31.94 3.14
1404 1495 2.321263 ATCAGATGGTGCAGCTCGGG 62.321 60.000 18.08 9.75 0.00 5.14
1421 1512 2.564062 TCGGGAAAGATGTACGTCCTTT 59.436 45.455 11.55 10.88 33.32 3.11
1435 1526 1.736126 GTCCTTTAGCCGTTTACCAGC 59.264 52.381 0.00 0.00 0.00 4.85
1483 1591 4.537433 CTGCGGCCTGCCCTACTC 62.537 72.222 15.40 0.00 45.60 2.59
1485 1593 4.228567 GCGGCCTGCCCTACTCTC 62.229 72.222 0.00 0.00 37.76 3.20
1486 1594 3.541713 CGGCCTGCCCTACTCTCC 61.542 72.222 0.00 0.00 0.00 3.71
1487 1595 2.041405 GGCCTGCCCTACTCTCCT 60.041 66.667 0.00 0.00 0.00 3.69
1488 1596 1.233369 GGCCTGCCCTACTCTCCTA 59.767 63.158 0.00 0.00 0.00 2.94
1489 1597 0.830023 GGCCTGCCCTACTCTCCTAG 60.830 65.000 0.00 0.00 0.00 3.02
1490 1598 0.105913 GCCTGCCCTACTCTCCTAGT 60.106 60.000 0.00 0.00 42.62 2.57
1491 1599 1.698506 CCTGCCCTACTCTCCTAGTG 58.301 60.000 0.00 0.00 39.39 2.74
1492 1600 1.036707 CTGCCCTACTCTCCTAGTGC 58.963 60.000 0.00 0.00 39.39 4.40
1493 1601 0.397254 TGCCCTACTCTCCTAGTGCC 60.397 60.000 0.00 0.00 39.39 5.01
1494 1602 1.116536 GCCCTACTCTCCTAGTGCCC 61.117 65.000 0.00 0.00 39.39 5.36
1495 1603 0.824182 CCCTACTCTCCTAGTGCCCG 60.824 65.000 0.00 0.00 39.39 6.13
1509 1618 2.352388 GTGCCCGCACTACTGAATTTA 58.648 47.619 12.54 0.00 43.12 1.40
1543 1652 2.884663 TGTTTAGTGGCGCGTATTTG 57.115 45.000 8.43 0.00 0.00 2.32
1618 1728 3.234630 TTGTCCTCGGCAGGGTTCG 62.235 63.158 3.64 0.00 40.80 3.95
1688 1798 3.317150 TCATACTCGCTATGCCGAATTG 58.683 45.455 0.00 0.00 36.72 2.32
1757 1867 6.327386 ACCCTTCACCTAATAATGTGATGT 57.673 37.500 0.00 0.00 40.88 3.06
1792 1903 8.918202 ATATGAGTTTCTTGTTTCCTGTTGTA 57.082 30.769 0.00 0.00 0.00 2.41
1858 1969 5.992217 CCTGAGTGGATATTAAGTGTTAGCC 59.008 44.000 0.00 0.00 38.35 3.93
1917 2028 5.771666 TGGAATCTGCTTTCATGAAGAAGTT 59.228 36.000 8.41 4.89 41.24 2.66
1919 2030 7.448161 TGGAATCTGCTTTCATGAAGAAGTTAA 59.552 33.333 8.41 0.00 41.24 2.01
1949 2060 4.715534 TCAAGGATACCCTGTTTGTCAA 57.284 40.909 0.00 0.00 43.48 3.18
1958 2069 7.122055 GGATACCCTGTTTGTCAATGATGTTAA 59.878 37.037 0.00 0.00 0.00 2.01
1971 2082 5.679734 ATGATGTTAAAGCGGTGATCATC 57.320 39.130 0.00 0.00 0.00 2.92
2022 2778 5.411669 GTCACCCTTTAACGATGAAGTCAAT 59.588 40.000 0.00 0.00 0.00 2.57
2177 2944 4.654915 TCTCATGAAACTTCCATTGCTGA 58.345 39.130 0.00 0.00 0.00 4.26
2178 2945 5.072055 TCTCATGAAACTTCCATTGCTGAA 58.928 37.500 0.00 0.00 0.00 3.02
2179 2946 5.535783 TCTCATGAAACTTCCATTGCTGAAA 59.464 36.000 0.00 0.00 0.00 2.69
2180 2947 6.209986 TCTCATGAAACTTCCATTGCTGAAAT 59.790 34.615 0.00 0.00 0.00 2.17
2181 2948 6.761312 TCATGAAACTTCCATTGCTGAAATT 58.239 32.000 0.00 0.00 0.00 1.82
2182 2949 6.647481 TCATGAAACTTCCATTGCTGAAATTG 59.353 34.615 0.00 0.00 0.00 2.32
2183 2950 4.751098 TGAAACTTCCATTGCTGAAATTGC 59.249 37.500 0.00 0.00 0.00 3.56
2184 2951 4.612264 AACTTCCATTGCTGAAATTGCT 57.388 36.364 0.00 0.00 0.00 3.91
2185 2952 3.921677 ACTTCCATTGCTGAAATTGCTG 58.078 40.909 0.00 0.00 0.00 4.41
2321 3088 4.318332 ACCGCTACAAGTAAGTTTTACCC 58.682 43.478 0.00 0.00 0.00 3.69
2395 3162 7.610865 AGAACCTCTCAAGCTATATCTTATGC 58.389 38.462 0.00 0.00 0.00 3.14
2723 3494 5.903764 TTTTTCAAAGAAATGGTGATGCG 57.096 34.783 0.00 0.00 0.00 4.73
2725 3496 3.829886 TCAAAGAAATGGTGATGCGAC 57.170 42.857 0.00 0.00 0.00 5.19
2726 3497 3.145286 TCAAAGAAATGGTGATGCGACA 58.855 40.909 0.00 0.00 0.00 4.35
2727 3498 3.758023 TCAAAGAAATGGTGATGCGACAT 59.242 39.130 0.00 0.00 0.00 3.06
2728 3499 3.770263 AAGAAATGGTGATGCGACATG 57.230 42.857 0.00 0.00 0.00 3.21
2800 3573 7.480760 AGTTTAATAAAGAACATGGCCACAT 57.519 32.000 8.16 0.00 37.99 3.21
2836 3609 3.454371 AACTATATGCCGTGGTGAGAC 57.546 47.619 0.00 0.00 0.00 3.36
2898 3671 0.974383 ACCGGGAGAATGAACTTCGT 59.026 50.000 6.32 0.00 38.98 3.85
3028 3801 4.952335 CCAAAACAGAAGGGCTATGAGAAT 59.048 41.667 0.00 0.00 0.00 2.40
3055 3828 7.867445 AACGCACCAGTTTATCTTTATTTTG 57.133 32.000 0.00 0.00 0.00 2.44
3141 3915 9.612620 GAGACTAAAAACTTATGTTTCCACATG 57.387 33.333 7.15 0.00 44.70 3.21
3186 3960 7.907389 AGGATCACTGTGACTAGAAATTGTTA 58.093 34.615 13.50 0.00 0.00 2.41
3207 3981 9.990360 TTGTTACTGATGTGTTAAGAGTTCATA 57.010 29.630 0.00 0.00 0.00 2.15
3244 4018 2.294233 CAGGGTGGAGTTTGTCATGTTG 59.706 50.000 0.00 0.00 0.00 3.33
3333 4107 3.066760 CCTGAAACTTTCCATAATCCCGC 59.933 47.826 0.00 0.00 0.00 6.13
3338 4112 3.660865 ACTTTCCATAATCCCGCGATAC 58.339 45.455 8.23 0.00 0.00 2.24
3391 4165 3.186409 GCTCTGTTGTGCTGAATTCGTAA 59.814 43.478 0.04 0.00 0.00 3.18
3392 4166 4.142816 GCTCTGTTGTGCTGAATTCGTAAT 60.143 41.667 0.04 0.00 0.00 1.89
3426 4476 5.019785 ACCTCTATTCCGTTAATGTGACC 57.980 43.478 0.00 0.00 0.00 4.02
3427 4477 4.141779 ACCTCTATTCCGTTAATGTGACCC 60.142 45.833 0.00 0.00 0.00 4.46
3428 4478 4.141801 CCTCTATTCCGTTAATGTGACCCA 60.142 45.833 0.00 0.00 0.00 4.51
3429 4479 4.761975 TCTATTCCGTTAATGTGACCCAC 58.238 43.478 0.00 0.00 34.56 4.61
3430 4480 1.798283 TTCCGTTAATGTGACCCACG 58.202 50.000 0.00 0.00 37.14 4.94
3431 4481 0.967662 TCCGTTAATGTGACCCACGA 59.032 50.000 0.00 0.00 37.14 4.35
3432 4482 1.067425 TCCGTTAATGTGACCCACGAG 60.067 52.381 0.00 0.00 37.14 4.18
3433 4483 1.355971 CGTTAATGTGACCCACGAGG 58.644 55.000 0.00 0.00 43.78 4.63
3484 4534 3.914312 AGTACATTGACCTGAGACGTTG 58.086 45.455 0.00 0.00 0.00 4.10
3488 4538 4.495422 ACATTGACCTGAGACGTTGATAC 58.505 43.478 0.00 0.00 0.00 2.24
3513 4563 7.041235 ACGTATTCGGTAGAAAACATCCAAAAA 60.041 33.333 0.00 0.00 40.15 1.94
3523 4573 7.381323 AGAAAACATCCAAAAATTCAGGCTAG 58.619 34.615 0.00 0.00 0.00 3.42
3687 4738 2.233271 CTCAGAAACATGTGGCCAGTT 58.767 47.619 5.11 3.85 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.531974 TCGCACTTGGGTGAGTTGTC 60.532 55.000 0.00 0.00 45.61 3.18
1 2 0.532862 CTCGCACTTGGGTGAGTTGT 60.533 55.000 5.36 0.00 45.61 3.32
2 3 2.238353 CTCGCACTTGGGTGAGTTG 58.762 57.895 5.36 0.00 45.61 3.16
3 4 4.779475 CTCGCACTTGGGTGAGTT 57.221 55.556 5.36 0.00 45.61 3.01
6 7 1.070786 GGAACTCGCACTTGGGTGA 59.929 57.895 0.00 0.00 45.61 4.02
7 8 0.817634 TTGGAACTCGCACTTGGGTG 60.818 55.000 0.00 0.00 45.53 4.61
8 9 0.535102 CTTGGAACTCGCACTTGGGT 60.535 55.000 0.00 0.00 0.00 4.51
9 10 0.250295 TCTTGGAACTCGCACTTGGG 60.250 55.000 0.00 0.00 0.00 4.12
10 11 1.532868 CTTCTTGGAACTCGCACTTGG 59.467 52.381 0.00 0.00 0.00 3.61
11 12 1.069636 GCTTCTTGGAACTCGCACTTG 60.070 52.381 0.00 0.00 0.00 3.16
12 13 1.230324 GCTTCTTGGAACTCGCACTT 58.770 50.000 0.00 0.00 0.00 3.16
13 14 0.106708 TGCTTCTTGGAACTCGCACT 59.893 50.000 0.00 0.00 0.00 4.40
14 15 0.514691 CTGCTTCTTGGAACTCGCAC 59.485 55.000 0.00 0.00 0.00 5.34
15 16 1.230635 GCTGCTTCTTGGAACTCGCA 61.231 55.000 0.00 0.00 0.00 5.10
16 17 1.230635 TGCTGCTTCTTGGAACTCGC 61.231 55.000 0.00 0.00 0.00 5.03
17 18 0.795085 CTGCTGCTTCTTGGAACTCG 59.205 55.000 0.00 0.00 0.00 4.18
18 19 0.520847 GCTGCTGCTTCTTGGAACTC 59.479 55.000 8.53 0.00 36.03 3.01
19 20 1.233285 CGCTGCTGCTTCTTGGAACT 61.233 55.000 14.03 0.00 36.97 3.01
20 21 1.208614 CGCTGCTGCTTCTTGGAAC 59.791 57.895 14.03 0.00 36.97 3.62
21 22 2.620112 GCGCTGCTGCTTCTTGGAA 61.620 57.895 14.03 0.00 36.97 3.53
22 23 3.052082 GCGCTGCTGCTTCTTGGA 61.052 61.111 14.03 0.00 36.97 3.53
23 24 4.456253 CGCGCTGCTGCTTCTTGG 62.456 66.667 14.03 0.00 36.97 3.61
39 40 4.156622 TCGTCGACGGCACTAGCG 62.157 66.667 35.05 9.05 43.41 4.26
40 41 2.277373 CTCGTCGACGGCACTAGC 60.277 66.667 35.05 0.00 40.29 3.42
41 42 2.277373 GCTCGTCGACGGCACTAG 60.277 66.667 35.05 25.25 40.29 2.57
42 43 4.156622 CGCTCGTCGACGGCACTA 62.157 66.667 34.14 19.78 41.67 2.74
54 55 4.771356 TTTCGTCTCGGCCGCTCG 62.771 66.667 23.51 23.14 0.00 5.03
55 56 3.179939 GTTTCGTCTCGGCCGCTC 61.180 66.667 23.51 12.07 0.00 5.03
56 57 3.681835 AGTTTCGTCTCGGCCGCT 61.682 61.111 23.51 5.96 0.00 5.52
57 58 3.479269 CAGTTTCGTCTCGGCCGC 61.479 66.667 23.51 5.56 0.00 6.53
58 59 2.087009 GTCAGTTTCGTCTCGGCCG 61.087 63.158 22.12 22.12 0.00 6.13
59 60 1.009389 CAGTCAGTTTCGTCTCGGCC 61.009 60.000 0.00 0.00 0.00 6.13
60 61 0.318784 ACAGTCAGTTTCGTCTCGGC 60.319 55.000 0.00 0.00 0.00 5.54
61 62 1.666311 GGACAGTCAGTTTCGTCTCGG 60.666 57.143 2.17 0.00 0.00 4.63
62 63 1.666311 GGGACAGTCAGTTTCGTCTCG 60.666 57.143 2.17 0.00 0.00 4.04
63 64 1.340248 TGGGACAGTCAGTTTCGTCTC 59.660 52.381 2.17 0.00 0.00 3.36
64 65 1.410004 TGGGACAGTCAGTTTCGTCT 58.590 50.000 2.17 0.00 0.00 4.18
65 66 3.980583 TGGGACAGTCAGTTTCGTC 57.019 52.632 2.17 0.00 0.00 4.20
77 78 3.504520 GTCGATTTTAAAAGCCTGGGACA 59.495 43.478 10.43 0.00 0.00 4.02
78 79 3.756963 AGTCGATTTTAAAAGCCTGGGAC 59.243 43.478 10.43 11.10 0.00 4.46
79 80 4.028993 AGTCGATTTTAAAAGCCTGGGA 57.971 40.909 10.43 0.00 0.00 4.37
80 81 4.217550 TGAAGTCGATTTTAAAAGCCTGGG 59.782 41.667 10.43 0.00 0.00 4.45
81 82 5.048713 AGTGAAGTCGATTTTAAAAGCCTGG 60.049 40.000 10.43 0.00 0.00 4.45
82 83 6.002062 AGTGAAGTCGATTTTAAAAGCCTG 57.998 37.500 10.43 0.00 0.00 4.85
83 84 5.998363 AGAGTGAAGTCGATTTTAAAAGCCT 59.002 36.000 10.43 0.33 0.00 4.58
84 85 6.242508 AGAGTGAAGTCGATTTTAAAAGCC 57.757 37.500 10.43 2.40 0.00 4.35
85 86 8.561932 AAAAGAGTGAAGTCGATTTTAAAAGC 57.438 30.769 6.12 6.12 0.00 3.51
86 87 9.716507 TGAAAAGAGTGAAGTCGATTTTAAAAG 57.283 29.630 6.79 0.00 0.00 2.27
87 88 9.498307 GTGAAAAGAGTGAAGTCGATTTTAAAA 57.502 29.630 2.51 2.51 0.00 1.52
88 89 8.670135 TGTGAAAAGAGTGAAGTCGATTTTAAA 58.330 29.630 0.00 0.00 0.00 1.52
89 90 8.120465 GTGTGAAAAGAGTGAAGTCGATTTTAA 58.880 33.333 0.00 0.00 0.00 1.52
90 91 7.279090 TGTGTGAAAAGAGTGAAGTCGATTTTA 59.721 33.333 0.00 0.00 0.00 1.52
91 92 6.093495 TGTGTGAAAAGAGTGAAGTCGATTTT 59.907 34.615 0.00 0.00 0.00 1.82
92 93 5.584649 TGTGTGAAAAGAGTGAAGTCGATTT 59.415 36.000 0.00 0.00 0.00 2.17
93 94 5.116180 TGTGTGAAAAGAGTGAAGTCGATT 58.884 37.500 0.00 0.00 0.00 3.34
94 95 4.693283 TGTGTGAAAAGAGTGAAGTCGAT 58.307 39.130 0.00 0.00 0.00 3.59
95 96 4.118093 TGTGTGAAAAGAGTGAAGTCGA 57.882 40.909 0.00 0.00 0.00 4.20
96 97 4.494199 GGTTGTGTGAAAAGAGTGAAGTCG 60.494 45.833 0.00 0.00 0.00 4.18
97 98 4.394920 TGGTTGTGTGAAAAGAGTGAAGTC 59.605 41.667 0.00 0.00 0.00 3.01
98 99 4.331968 TGGTTGTGTGAAAAGAGTGAAGT 58.668 39.130 0.00 0.00 0.00 3.01
99 100 4.963276 TGGTTGTGTGAAAAGAGTGAAG 57.037 40.909 0.00 0.00 0.00 3.02
100 101 5.652014 AGATTGGTTGTGTGAAAAGAGTGAA 59.348 36.000 0.00 0.00 0.00 3.18
101 102 5.192927 AGATTGGTTGTGTGAAAAGAGTGA 58.807 37.500 0.00 0.00 0.00 3.41
102 103 5.505173 AGATTGGTTGTGTGAAAAGAGTG 57.495 39.130 0.00 0.00 0.00 3.51
103 104 6.119536 TGTAGATTGGTTGTGTGAAAAGAGT 58.880 36.000 0.00 0.00 0.00 3.24
104 105 6.483307 TCTGTAGATTGGTTGTGTGAAAAGAG 59.517 38.462 0.00 0.00 0.00 2.85
105 106 6.353323 TCTGTAGATTGGTTGTGTGAAAAGA 58.647 36.000 0.00 0.00 0.00 2.52
106 107 6.618287 TCTGTAGATTGGTTGTGTGAAAAG 57.382 37.500 0.00 0.00 0.00 2.27
107 108 6.183360 GGTTCTGTAGATTGGTTGTGTGAAAA 60.183 38.462 0.00 0.00 0.00 2.29
108 109 5.298276 GGTTCTGTAGATTGGTTGTGTGAAA 59.702 40.000 0.00 0.00 0.00 2.69
109 110 4.819630 GGTTCTGTAGATTGGTTGTGTGAA 59.180 41.667 0.00 0.00 0.00 3.18
110 111 4.385825 GGTTCTGTAGATTGGTTGTGTGA 58.614 43.478 0.00 0.00 0.00 3.58
111 112 3.186409 CGGTTCTGTAGATTGGTTGTGTG 59.814 47.826 0.00 0.00 0.00 3.82
112 113 3.399330 CGGTTCTGTAGATTGGTTGTGT 58.601 45.455 0.00 0.00 0.00 3.72
113 114 2.742053 CCGGTTCTGTAGATTGGTTGTG 59.258 50.000 0.00 0.00 0.00 3.33
114 115 2.370849 ACCGGTTCTGTAGATTGGTTGT 59.629 45.455 0.00 0.00 0.00 3.32
115 116 3.053831 ACCGGTTCTGTAGATTGGTTG 57.946 47.619 0.00 0.00 0.00 3.77
116 117 3.782656 AACCGGTTCTGTAGATTGGTT 57.217 42.857 15.86 6.97 32.17 3.67
117 118 3.782656 AAACCGGTTCTGTAGATTGGT 57.217 42.857 22.53 0.00 0.00 3.67
118 119 3.190535 CCAAAACCGGTTCTGTAGATTGG 59.809 47.826 23.36 23.36 0.00 3.16
119 120 4.069304 TCCAAAACCGGTTCTGTAGATTG 58.931 43.478 22.53 18.28 0.00 2.67
120 121 4.070009 GTCCAAAACCGGTTCTGTAGATT 58.930 43.478 22.53 6.30 0.00 2.40
121 122 3.558533 GGTCCAAAACCGGTTCTGTAGAT 60.559 47.826 22.53 0.00 38.58 1.98
122 123 2.224354 GGTCCAAAACCGGTTCTGTAGA 60.224 50.000 22.53 7.95 38.58 2.59
123 124 2.148768 GGTCCAAAACCGGTTCTGTAG 58.851 52.381 22.53 5.36 38.58 2.74
124 125 2.259266 GGTCCAAAACCGGTTCTGTA 57.741 50.000 22.53 0.00 38.58 2.74
125 126 3.105187 GGTCCAAAACCGGTTCTGT 57.895 52.632 22.53 6.28 38.58 3.41
185 186 9.911788 AGACATTCATTGTATTCCTATGAACTT 57.088 29.630 0.00 0.00 40.08 2.66
186 187 9.334947 CAGACATTCATTGTATTCCTATGAACT 57.665 33.333 0.00 0.00 40.08 3.01
187 188 8.562892 CCAGACATTCATTGTATTCCTATGAAC 58.437 37.037 0.00 0.00 40.08 3.18
188 189 8.274322 ACCAGACATTCATTGTATTCCTATGAA 58.726 33.333 0.00 0.00 41.12 2.57
189 190 7.716560 CACCAGACATTCATTGTATTCCTATGA 59.283 37.037 0.00 0.00 39.18 2.15
190 191 7.040892 CCACCAGACATTCATTGTATTCCTATG 60.041 40.741 0.00 0.00 39.18 2.23
191 192 7.000472 CCACCAGACATTCATTGTATTCCTAT 59.000 38.462 0.00 0.00 39.18 2.57
192 193 6.356556 CCACCAGACATTCATTGTATTCCTA 58.643 40.000 0.00 0.00 39.18 2.94
193 194 5.195940 CCACCAGACATTCATTGTATTCCT 58.804 41.667 0.00 0.00 39.18 3.36
194 195 4.339247 CCCACCAGACATTCATTGTATTCC 59.661 45.833 0.00 0.00 39.18 3.01
195 196 4.949856 ACCCACCAGACATTCATTGTATTC 59.050 41.667 0.00 0.00 39.18 1.75
196 197 4.934356 ACCCACCAGACATTCATTGTATT 58.066 39.130 0.00 0.00 39.18 1.89
197 198 4.591321 ACCCACCAGACATTCATTGTAT 57.409 40.909 0.00 0.00 39.18 2.29
198 199 4.380843 AACCCACCAGACATTCATTGTA 57.619 40.909 0.00 0.00 39.18 2.41
199 200 2.978156 ACCCACCAGACATTCATTGT 57.022 45.000 0.00 0.00 42.79 2.71
200 201 5.920193 ATAAACCCACCAGACATTCATTG 57.080 39.130 0.00 0.00 0.00 2.82
201 202 6.096846 GCTTATAAACCCACCAGACATTCATT 59.903 38.462 0.00 0.00 0.00 2.57
202 203 5.594317 GCTTATAAACCCACCAGACATTCAT 59.406 40.000 0.00 0.00 0.00 2.57
203 204 4.947388 GCTTATAAACCCACCAGACATTCA 59.053 41.667 0.00 0.00 0.00 2.57
204 205 4.338400 GGCTTATAAACCCACCAGACATTC 59.662 45.833 0.00 0.00 0.00 2.67
205 206 4.264172 TGGCTTATAAACCCACCAGACATT 60.264 41.667 2.45 0.00 0.00 2.71
206 207 3.268334 TGGCTTATAAACCCACCAGACAT 59.732 43.478 2.45 0.00 0.00 3.06
207 208 2.645297 TGGCTTATAAACCCACCAGACA 59.355 45.455 2.45 0.00 0.00 3.41
208 209 3.359695 TGGCTTATAAACCCACCAGAC 57.640 47.619 2.45 0.00 0.00 3.51
209 210 5.192923 ACTTATGGCTTATAAACCCACCAGA 59.807 40.000 2.45 0.00 31.12 3.86
210 211 5.299279 CACTTATGGCTTATAAACCCACCAG 59.701 44.000 2.45 6.53 31.12 4.00
211 212 5.197451 CACTTATGGCTTATAAACCCACCA 58.803 41.667 2.45 0.00 31.12 4.17
212 213 4.583073 CCACTTATGGCTTATAAACCCACC 59.417 45.833 2.45 0.00 39.82 4.61
213 214 5.767816 CCACTTATGGCTTATAAACCCAC 57.232 43.478 2.45 0.00 39.82 4.61
227 228 6.366332 GGACTAGATTATGAACGCCACTTATG 59.634 42.308 0.00 0.00 0.00 1.90
228 229 6.456501 GGACTAGATTATGAACGCCACTTAT 58.543 40.000 0.00 0.00 0.00 1.73
229 230 5.506815 CGGACTAGATTATGAACGCCACTTA 60.507 44.000 0.00 0.00 0.00 2.24
230 231 4.694339 GGACTAGATTATGAACGCCACTT 58.306 43.478 0.00 0.00 0.00 3.16
231 232 3.243434 CGGACTAGATTATGAACGCCACT 60.243 47.826 0.00 0.00 0.00 4.00
232 233 3.050619 CGGACTAGATTATGAACGCCAC 58.949 50.000 0.00 0.00 0.00 5.01
233 234 2.953648 TCGGACTAGATTATGAACGCCA 59.046 45.455 0.00 0.00 0.00 5.69
234 235 3.637998 TCGGACTAGATTATGAACGCC 57.362 47.619 0.00 0.00 0.00 5.68
235 236 4.085004 GCTTTCGGACTAGATTATGAACGC 60.085 45.833 0.00 0.00 0.00 4.84
236 237 4.146616 CGCTTTCGGACTAGATTATGAACG 59.853 45.833 0.00 0.00 0.00 3.95
237 238 5.041940 ACGCTTTCGGACTAGATTATGAAC 58.958 41.667 0.00 0.00 40.69 3.18
238 239 5.041287 CACGCTTTCGGACTAGATTATGAA 58.959 41.667 0.00 0.00 40.69 2.57
239 240 4.097437 ACACGCTTTCGGACTAGATTATGA 59.903 41.667 0.00 0.00 40.69 2.15
240 241 4.360563 ACACGCTTTCGGACTAGATTATG 58.639 43.478 0.00 0.00 40.69 1.90
241 242 4.650754 ACACGCTTTCGGACTAGATTAT 57.349 40.909 0.00 0.00 40.69 1.28
242 243 4.445452 AACACGCTTTCGGACTAGATTA 57.555 40.909 0.00 0.00 40.69 1.75
243 244 3.314541 AACACGCTTTCGGACTAGATT 57.685 42.857 0.00 0.00 40.69 2.40
244 245 3.314541 AAACACGCTTTCGGACTAGAT 57.685 42.857 0.00 0.00 40.69 1.98
245 246 2.806608 AAACACGCTTTCGGACTAGA 57.193 45.000 0.00 0.00 40.69 2.43
246 247 2.921754 CCTAAACACGCTTTCGGACTAG 59.078 50.000 0.00 0.00 40.69 2.57
247 248 2.927871 GCCTAAACACGCTTTCGGACTA 60.928 50.000 1.96 0.00 40.69 2.59
248 249 1.792006 CCTAAACACGCTTTCGGACT 58.208 50.000 0.00 0.00 40.69 3.85
249 250 0.165295 GCCTAAACACGCTTTCGGAC 59.835 55.000 1.96 0.00 40.69 4.79
250 251 0.952010 GGCCTAAACACGCTTTCGGA 60.952 55.000 0.00 0.00 40.69 4.55
251 252 1.500396 GGCCTAAACACGCTTTCGG 59.500 57.895 0.00 0.00 40.69 4.30
252 253 1.231958 TGGGCCTAAACACGCTTTCG 61.232 55.000 4.53 0.00 42.43 3.46
253 254 0.521735 CTGGGCCTAAACACGCTTTC 59.478 55.000 4.53 0.00 0.00 2.62
254 255 0.109723 TCTGGGCCTAAACACGCTTT 59.890 50.000 4.53 0.00 0.00 3.51
255 256 0.605589 GTCTGGGCCTAAACACGCTT 60.606 55.000 4.53 0.00 0.00 4.68
256 257 1.003718 GTCTGGGCCTAAACACGCT 60.004 57.895 4.53 0.00 0.00 5.07
257 258 2.038837 GGTCTGGGCCTAAACACGC 61.039 63.158 4.53 0.00 0.00 5.34
258 259 1.376812 GGGTCTGGGCCTAAACACG 60.377 63.158 4.53 0.00 0.00 4.49
259 260 0.111639 TTGGGTCTGGGCCTAAACAC 59.888 55.000 4.53 0.00 0.00 3.32
260 261 0.111639 GTTGGGTCTGGGCCTAAACA 59.888 55.000 4.53 0.00 30.76 2.83
261 262 0.611062 GGTTGGGTCTGGGCCTAAAC 60.611 60.000 4.53 0.00 30.76 2.01
262 263 1.068943 TGGTTGGGTCTGGGCCTAAA 61.069 55.000 4.53 0.00 30.76 1.85
263 264 0.849094 ATGGTTGGGTCTGGGCCTAA 60.849 55.000 4.53 0.00 0.00 2.69
264 265 0.045008 TATGGTTGGGTCTGGGCCTA 59.955 55.000 4.53 0.00 0.00 3.93
265 266 0.849094 TTATGGTTGGGTCTGGGCCT 60.849 55.000 4.53 0.00 0.00 5.19
266 267 0.683179 GTTATGGTTGGGTCTGGGCC 60.683 60.000 0.00 0.00 0.00 5.80
267 268 0.331616 AGTTATGGTTGGGTCTGGGC 59.668 55.000 0.00 0.00 0.00 5.36
268 269 3.716872 AGATAGTTATGGTTGGGTCTGGG 59.283 47.826 0.00 0.00 0.00 4.45
269 270 5.373812 AAGATAGTTATGGTTGGGTCTGG 57.626 43.478 0.00 0.00 0.00 3.86
270 271 6.318900 GGAAAAGATAGTTATGGTTGGGTCTG 59.681 42.308 0.00 0.00 0.00 3.51
271 272 6.011981 TGGAAAAGATAGTTATGGTTGGGTCT 60.012 38.462 0.00 0.00 0.00 3.85
272 273 6.095021 GTGGAAAAGATAGTTATGGTTGGGTC 59.905 42.308 0.00 0.00 0.00 4.46
273 274 5.949952 GTGGAAAAGATAGTTATGGTTGGGT 59.050 40.000 0.00 0.00 0.00 4.51
274 275 5.359860 GGTGGAAAAGATAGTTATGGTTGGG 59.640 44.000 0.00 0.00 0.00 4.12
275 276 5.949354 TGGTGGAAAAGATAGTTATGGTTGG 59.051 40.000 0.00 0.00 0.00 3.77
276 277 7.645058 ATGGTGGAAAAGATAGTTATGGTTG 57.355 36.000 0.00 0.00 0.00 3.77
277 278 9.762381 TTTATGGTGGAAAAGATAGTTATGGTT 57.238 29.630 0.00 0.00 0.00 3.67
278 279 9.762381 TTTTATGGTGGAAAAGATAGTTATGGT 57.238 29.630 0.00 0.00 0.00 3.55
281 282 9.762381 TGGTTTTATGGTGGAAAAGATAGTTAT 57.238 29.630 0.00 0.00 0.00 1.89
282 283 9.589461 TTGGTTTTATGGTGGAAAAGATAGTTA 57.411 29.630 0.00 0.00 0.00 2.24
283 284 8.485578 TTGGTTTTATGGTGGAAAAGATAGTT 57.514 30.769 0.00 0.00 0.00 2.24
284 285 8.364894 GTTTGGTTTTATGGTGGAAAAGATAGT 58.635 33.333 0.00 0.00 0.00 2.12
285 286 7.817478 GGTTTGGTTTTATGGTGGAAAAGATAG 59.183 37.037 0.00 0.00 0.00 2.08
286 287 7.290248 TGGTTTGGTTTTATGGTGGAAAAGATA 59.710 33.333 0.00 0.00 0.00 1.98
287 288 6.100424 TGGTTTGGTTTTATGGTGGAAAAGAT 59.900 34.615 0.00 0.00 0.00 2.40
288 289 5.425539 TGGTTTGGTTTTATGGTGGAAAAGA 59.574 36.000 0.00 0.00 0.00 2.52
289 290 5.675538 TGGTTTGGTTTTATGGTGGAAAAG 58.324 37.500 0.00 0.00 0.00 2.27
290 291 5.425539 TCTGGTTTGGTTTTATGGTGGAAAA 59.574 36.000 0.00 0.00 0.00 2.29
291 292 4.962995 TCTGGTTTGGTTTTATGGTGGAAA 59.037 37.500 0.00 0.00 0.00 3.13
292 293 4.342665 GTCTGGTTTGGTTTTATGGTGGAA 59.657 41.667 0.00 0.00 0.00 3.53
293 294 3.892588 GTCTGGTTTGGTTTTATGGTGGA 59.107 43.478 0.00 0.00 0.00 4.02
294 295 3.006430 GGTCTGGTTTGGTTTTATGGTGG 59.994 47.826 0.00 0.00 0.00 4.61
295 296 3.006430 GGGTCTGGTTTGGTTTTATGGTG 59.994 47.826 0.00 0.00 0.00 4.17
296 297 3.236047 GGGTCTGGTTTGGTTTTATGGT 58.764 45.455 0.00 0.00 0.00 3.55
297 298 3.235200 TGGGTCTGGTTTGGTTTTATGG 58.765 45.455 0.00 0.00 0.00 2.74
298 299 4.343814 AGTTGGGTCTGGTTTGGTTTTATG 59.656 41.667 0.00 0.00 0.00 1.90
299 300 4.343814 CAGTTGGGTCTGGTTTGGTTTTAT 59.656 41.667 0.00 0.00 0.00 1.40
300 301 3.702045 CAGTTGGGTCTGGTTTGGTTTTA 59.298 43.478 0.00 0.00 0.00 1.52
301 302 2.499693 CAGTTGGGTCTGGTTTGGTTTT 59.500 45.455 0.00 0.00 0.00 2.43
302 303 2.107366 CAGTTGGGTCTGGTTTGGTTT 58.893 47.619 0.00 0.00 0.00 3.27
303 304 1.006639 ACAGTTGGGTCTGGTTTGGTT 59.993 47.619 0.00 0.00 39.48 3.67
304 305 0.629058 ACAGTTGGGTCTGGTTTGGT 59.371 50.000 0.00 0.00 39.48 3.67
305 306 1.775385 AACAGTTGGGTCTGGTTTGG 58.225 50.000 0.00 0.00 39.48 3.28
306 307 2.293399 GCTAACAGTTGGGTCTGGTTTG 59.707 50.000 0.00 0.00 39.48 2.93
307 308 2.174854 AGCTAACAGTTGGGTCTGGTTT 59.825 45.455 0.00 0.00 39.48 3.27
308 309 1.774856 AGCTAACAGTTGGGTCTGGTT 59.225 47.619 0.00 0.00 39.48 3.67
309 310 1.072331 CAGCTAACAGTTGGGTCTGGT 59.928 52.381 0.00 0.00 39.48 4.00
310 311 1.611673 CCAGCTAACAGTTGGGTCTGG 60.612 57.143 8.35 8.35 42.16 3.86
311 312 1.813513 CCAGCTAACAGTTGGGTCTG 58.186 55.000 0.00 0.00 42.16 3.51
312 313 0.036875 GCCAGCTAACAGTTGGGTCT 59.963 55.000 10.55 0.00 45.46 3.85
313 314 2.556286 GCCAGCTAACAGTTGGGTC 58.444 57.895 10.55 0.00 45.46 4.46
314 315 4.821935 GCCAGCTAACAGTTGGGT 57.178 55.556 10.55 0.00 45.46 4.51
315 316 0.883833 CAAGCCAGCTAACAGTTGGG 59.116 55.000 10.55 0.00 45.46 4.12
317 318 0.242017 GCCAAGCCAGCTAACAGTTG 59.758 55.000 0.00 0.00 0.00 3.16
318 319 2.646121 GCCAAGCCAGCTAACAGTT 58.354 52.632 0.00 0.00 0.00 3.16
319 320 4.404691 GCCAAGCCAGCTAACAGT 57.595 55.556 0.00 0.00 0.00 3.55
330 331 0.947244 CGAGTTGATATGGGCCAAGC 59.053 55.000 11.89 3.41 0.00 4.01
331 332 2.614057 GTTCGAGTTGATATGGGCCAAG 59.386 50.000 11.89 0.00 0.00 3.61
332 333 2.639065 GTTCGAGTTGATATGGGCCAA 58.361 47.619 11.89 0.00 0.00 4.52
333 334 1.134220 GGTTCGAGTTGATATGGGCCA 60.134 52.381 9.61 9.61 0.00 5.36
334 335 1.134220 TGGTTCGAGTTGATATGGGCC 60.134 52.381 0.00 0.00 0.00 5.80
335 336 2.325583 TGGTTCGAGTTGATATGGGC 57.674 50.000 0.00 0.00 0.00 5.36
336 337 6.935741 TTAATTGGTTCGAGTTGATATGGG 57.064 37.500 0.00 0.00 0.00 4.00
337 338 7.193595 GGTTTAATTGGTTCGAGTTGATATGG 58.806 38.462 0.00 0.00 0.00 2.74
338 339 7.148154 TGGGTTTAATTGGTTCGAGTTGATATG 60.148 37.037 0.00 0.00 0.00 1.78
339 340 6.887545 TGGGTTTAATTGGTTCGAGTTGATAT 59.112 34.615 0.00 0.00 0.00 1.63
340 341 6.239396 TGGGTTTAATTGGTTCGAGTTGATA 58.761 36.000 0.00 0.00 0.00 2.15
341 342 5.074115 TGGGTTTAATTGGTTCGAGTTGAT 58.926 37.500 0.00 0.00 0.00 2.57
342 343 4.462133 TGGGTTTAATTGGTTCGAGTTGA 58.538 39.130 0.00 0.00 0.00 3.18
343 344 4.839668 TGGGTTTAATTGGTTCGAGTTG 57.160 40.909 0.00 0.00 0.00 3.16
344 345 6.490721 TGTTATGGGTTTAATTGGTTCGAGTT 59.509 34.615 0.00 0.00 0.00 3.01
345 346 6.005198 TGTTATGGGTTTAATTGGTTCGAGT 58.995 36.000 0.00 0.00 0.00 4.18
346 347 6.373216 TCTGTTATGGGTTTAATTGGTTCGAG 59.627 38.462 0.00 0.00 0.00 4.04
347 348 6.239396 TCTGTTATGGGTTTAATTGGTTCGA 58.761 36.000 0.00 0.00 0.00 3.71
348 349 6.503589 TCTGTTATGGGTTTAATTGGTTCG 57.496 37.500 0.00 0.00 0.00 3.95
349 350 8.984764 GTTTTCTGTTATGGGTTTAATTGGTTC 58.015 33.333 0.00 0.00 0.00 3.62
350 351 7.934665 GGTTTTCTGTTATGGGTTTAATTGGTT 59.065 33.333 0.00 0.00 0.00 3.67
351 352 7.071321 TGGTTTTCTGTTATGGGTTTAATTGGT 59.929 33.333 0.00 0.00 0.00 3.67
352 353 7.445945 TGGTTTTCTGTTATGGGTTTAATTGG 58.554 34.615 0.00 0.00 0.00 3.16
353 354 8.894768 TTGGTTTTCTGTTATGGGTTTAATTG 57.105 30.769 0.00 0.00 0.00 2.32
354 355 9.332502 GTTTGGTTTTCTGTTATGGGTTTAATT 57.667 29.630 0.00 0.00 0.00 1.40
355 356 7.934665 GGTTTGGTTTTCTGTTATGGGTTTAAT 59.065 33.333 0.00 0.00 0.00 1.40
356 357 7.093024 TGGTTTGGTTTTCTGTTATGGGTTTAA 60.093 33.333 0.00 0.00 0.00 1.52
357 358 6.383147 TGGTTTGGTTTTCTGTTATGGGTTTA 59.617 34.615 0.00 0.00 0.00 2.01
358 359 5.189934 TGGTTTGGTTTTCTGTTATGGGTTT 59.810 36.000 0.00 0.00 0.00 3.27
359 360 4.717280 TGGTTTGGTTTTCTGTTATGGGTT 59.283 37.500 0.00 0.00 0.00 4.11
360 361 4.290942 TGGTTTGGTTTTCTGTTATGGGT 58.709 39.130 0.00 0.00 0.00 4.51
361 362 4.946478 TGGTTTGGTTTTCTGTTATGGG 57.054 40.909 0.00 0.00 0.00 4.00
362 363 7.800155 AAATTGGTTTGGTTTTCTGTTATGG 57.200 32.000 0.00 0.00 0.00 2.74
364 365 9.332502 GGTTAAATTGGTTTGGTTTTCTGTTAT 57.667 29.630 0.00 0.00 0.00 1.89
365 366 7.491696 CGGTTAAATTGGTTTGGTTTTCTGTTA 59.508 33.333 0.00 0.00 0.00 2.41
366 367 6.314152 CGGTTAAATTGGTTTGGTTTTCTGTT 59.686 34.615 0.00 0.00 0.00 3.16
367 368 5.813157 CGGTTAAATTGGTTTGGTTTTCTGT 59.187 36.000 0.00 0.00 0.00 3.41
368 369 5.235401 CCGGTTAAATTGGTTTGGTTTTCTG 59.765 40.000 0.00 0.00 0.00 3.02
369 370 5.104859 ACCGGTTAAATTGGTTTGGTTTTCT 60.105 36.000 0.00 0.00 29.87 2.52
370 371 5.117584 ACCGGTTAAATTGGTTTGGTTTTC 58.882 37.500 0.00 0.00 29.87 2.29
371 372 5.100344 ACCGGTTAAATTGGTTTGGTTTT 57.900 34.783 0.00 0.00 29.87 2.43
372 373 4.757019 ACCGGTTAAATTGGTTTGGTTT 57.243 36.364 0.00 0.00 29.87 3.27
373 374 4.757019 AACCGGTTAAATTGGTTTGGTT 57.243 36.364 20.78 0.00 43.23 3.67
374 375 5.866159 TTAACCGGTTAAATTGGTTTGGT 57.134 34.783 32.42 4.08 43.23 3.67
375 376 6.456501 TCATTAACCGGTTAAATTGGTTTGG 58.543 36.000 36.33 19.34 43.23 3.28
376 377 7.948278 TTCATTAACCGGTTAAATTGGTTTG 57.052 32.000 36.33 27.86 43.23 2.93
377 378 8.959705 TTTTCATTAACCGGTTAAATTGGTTT 57.040 26.923 36.33 19.79 43.23 3.27
379 380 7.441760 GGTTTTTCATTAACCGGTTAAATTGGT 59.558 33.333 36.33 21.10 38.38 3.67
380 381 7.441458 TGGTTTTTCATTAACCGGTTAAATTGG 59.559 33.333 36.33 26.02 46.44 3.16
381 382 8.366671 TGGTTTTTCATTAACCGGTTAAATTG 57.633 30.769 36.33 30.24 46.44 2.32
382 383 9.562408 AATGGTTTTTCATTAACCGGTTAAATT 57.438 25.926 36.33 25.38 46.44 1.82
383 384 9.562408 AAATGGTTTTTCATTAACCGGTTAAAT 57.438 25.926 36.33 23.82 46.44 1.40
384 385 8.959705 AAATGGTTTTTCATTAACCGGTTAAA 57.040 26.923 36.33 22.97 46.44 1.52
385 386 7.656542 GGAAATGGTTTTTCATTAACCGGTTAA 59.343 33.333 35.24 35.24 46.44 2.01
386 387 7.153315 GGAAATGGTTTTTCATTAACCGGTTA 58.847 34.615 23.17 23.17 46.44 2.85
387 388 5.992829 GGAAATGGTTTTTCATTAACCGGTT 59.007 36.000 25.64 25.64 46.44 4.44
388 389 5.070580 TGGAAATGGTTTTTCATTAACCGGT 59.929 36.000 0.00 0.00 46.44 5.28
389 390 5.542779 TGGAAATGGTTTTTCATTAACCGG 58.457 37.500 0.00 0.00 46.44 5.28
390 391 6.451393 TCTGGAAATGGTTTTTCATTAACCG 58.549 36.000 0.00 0.00 46.44 4.44
391 392 8.846943 AATCTGGAAATGGTTTTTCATTAACC 57.153 30.769 0.00 0.00 44.28 2.85
395 396 9.002600 GCTTAAATCTGGAAATGGTTTTTCATT 57.997 29.630 1.05 0.00 38.84 2.57
396 397 8.156165 TGCTTAAATCTGGAAATGGTTTTTCAT 58.844 29.630 1.05 0.00 29.87 2.57
397 398 7.504403 TGCTTAAATCTGGAAATGGTTTTTCA 58.496 30.769 1.05 0.00 0.00 2.69
398 399 7.872483 TCTGCTTAAATCTGGAAATGGTTTTTC 59.128 33.333 0.00 0.00 0.00 2.29
399 400 7.657354 GTCTGCTTAAATCTGGAAATGGTTTTT 59.343 33.333 0.00 0.00 0.00 1.94
400 401 7.015584 AGTCTGCTTAAATCTGGAAATGGTTTT 59.984 33.333 0.00 0.00 0.00 2.43
401 402 6.494835 AGTCTGCTTAAATCTGGAAATGGTTT 59.505 34.615 0.00 0.00 0.00 3.27
402 403 6.012745 AGTCTGCTTAAATCTGGAAATGGTT 58.987 36.000 0.00 0.00 0.00 3.67
403 404 5.416952 CAGTCTGCTTAAATCTGGAAATGGT 59.583 40.000 0.00 0.00 0.00 3.55
404 405 5.163581 CCAGTCTGCTTAAATCTGGAAATGG 60.164 44.000 3.76 0.00 45.76 3.16
405 406 5.416952 ACCAGTCTGCTTAAATCTGGAAATG 59.583 40.000 15.03 0.00 45.76 2.32
406 407 5.416952 CACCAGTCTGCTTAAATCTGGAAAT 59.583 40.000 15.03 0.00 45.76 2.17
407 408 4.761739 CACCAGTCTGCTTAAATCTGGAAA 59.238 41.667 15.03 0.00 45.76 3.13
408 409 4.041567 TCACCAGTCTGCTTAAATCTGGAA 59.958 41.667 15.03 1.97 45.76 3.53
409 410 3.582647 TCACCAGTCTGCTTAAATCTGGA 59.417 43.478 15.03 0.00 45.76 3.86
411 412 5.426504 AGATCACCAGTCTGCTTAAATCTG 58.573 41.667 0.00 0.00 0.00 2.90
412 413 5.424895 AGAGATCACCAGTCTGCTTAAATCT 59.575 40.000 0.00 0.00 0.00 2.40
413 414 5.669477 AGAGATCACCAGTCTGCTTAAATC 58.331 41.667 0.00 0.00 0.00 2.17
414 415 5.690464 AGAGATCACCAGTCTGCTTAAAT 57.310 39.130 0.00 0.00 0.00 1.40
415 416 6.381133 TGATAGAGATCACCAGTCTGCTTAAA 59.619 38.462 0.00 0.00 37.15 1.52
416 417 5.893824 TGATAGAGATCACCAGTCTGCTTAA 59.106 40.000 0.00 0.00 37.15 1.85
417 418 5.449553 TGATAGAGATCACCAGTCTGCTTA 58.550 41.667 0.00 0.00 37.15 3.09
418 419 4.285020 TGATAGAGATCACCAGTCTGCTT 58.715 43.478 0.00 0.00 37.15 3.91
535 536 7.584987 ACTGTTTTTAGCTGCACAAATAGTAG 58.415 34.615 14.46 8.23 31.19 2.57
536 537 7.504924 ACTGTTTTTAGCTGCACAAATAGTA 57.495 32.000 14.46 0.00 31.19 1.82
559 630 7.379797 GGAAGAGCAAGAAAAGTTGTTTGATAC 59.620 37.037 0.00 0.00 0.00 2.24
575 646 2.544486 GCAACCAAAGTGGAAGAGCAAG 60.544 50.000 0.18 0.00 40.96 4.01
619 690 8.885346 TGGAAATGAAAATTAACAGGGGTATTT 58.115 29.630 0.00 0.00 0.00 1.40
649 727 7.255381 GCTTAGGATTATCACACTGATTTGCAT 60.255 37.037 0.00 0.00 38.26 3.96
699 777 8.885494 TGGAAACCAAATCACTTCAAAAATAG 57.115 30.769 0.00 0.00 0.00 1.73
725 803 3.638160 ACCATCACACTGATTTGCAACTT 59.362 39.130 0.00 0.00 34.28 2.66
738 816 2.079158 CACATCCACTGACCATCACAC 58.921 52.381 0.00 0.00 0.00 3.82
823 902 1.476891 CCTGTGCTACTGTACATCCGT 59.523 52.381 0.00 0.00 38.09 4.69
827 906 1.573108 AGGCCTGTGCTACTGTACAT 58.427 50.000 3.11 0.00 38.09 2.29
1069 1158 3.311110 GGTGGAGCGACAGGGTCA 61.311 66.667 0.00 0.00 45.03 4.02
1071 1160 4.954118 TGGGTGGAGCGACAGGGT 62.954 66.667 0.00 0.00 0.00 4.34
1095 1185 1.335810 GAGGGTGAAACGGAAACCAAC 59.664 52.381 0.00 0.00 38.12 3.77
1098 1188 1.848932 GCGAGGGTGAAACGGAAACC 61.849 60.000 0.00 0.00 38.12 3.27
1170 1260 4.194720 ATCGTCCTGCCGAGCGAC 62.195 66.667 0.00 0.00 40.68 5.19
1171 1261 4.193334 CATCGTCCTGCCGAGCGA 62.193 66.667 0.00 0.00 40.68 4.93
1173 1263 4.148825 ACCATCGTCCTGCCGAGC 62.149 66.667 0.00 0.00 40.68 5.03
1174 1264 2.202797 CACCATCGTCCTGCCGAG 60.203 66.667 0.00 0.00 40.68 4.63
1175 1265 2.994995 ACACCATCGTCCTGCCGA 60.995 61.111 0.00 0.00 41.73 5.54
1176 1266 2.509336 GACACCATCGTCCTGCCG 60.509 66.667 0.00 0.00 0.00 5.69
1177 1267 2.509336 CGACACCATCGTCCTGCC 60.509 66.667 0.00 0.00 46.25 4.85
1256 1347 0.320073 TTCGACGAAATGCCGGAGTT 60.320 50.000 5.05 0.00 0.00 3.01
1329 1420 3.735746 GCAAGAAGCAACGCATAAAAAGT 59.264 39.130 0.00 0.00 44.79 2.66
1330 1421 4.297944 GCAAGAAGCAACGCATAAAAAG 57.702 40.909 0.00 0.00 44.79 2.27
1404 1495 3.550678 CGGCTAAAGGACGTACATCTTTC 59.449 47.826 0.00 0.00 42.39 2.62
1435 1526 9.175060 CGATTAGTGACTACTGAATAGTGAATG 57.825 37.037 0.00 0.00 44.64 2.67
1476 1584 0.824182 CGGGCACTAGGAGAGTAGGG 60.824 65.000 0.00 0.00 35.64 3.53
1477 1585 1.457009 GCGGGCACTAGGAGAGTAGG 61.457 65.000 0.00 0.00 35.64 3.18
1478 1586 0.752009 TGCGGGCACTAGGAGAGTAG 60.752 60.000 0.00 0.00 35.64 2.57
1479 1587 1.035932 GTGCGGGCACTAGGAGAGTA 61.036 60.000 16.14 0.00 43.12 2.59
1480 1588 2.037367 TGCGGGCACTAGGAGAGT 59.963 61.111 0.00 0.00 39.82 3.24
1481 1589 2.496817 GTGCGGGCACTAGGAGAG 59.503 66.667 16.14 0.00 43.12 3.20
1489 1597 1.165270 AAATTCAGTAGTGCGGGCAC 58.835 50.000 15.68 15.68 46.50 5.01
1490 1598 2.745281 GTTAAATTCAGTAGTGCGGGCA 59.255 45.455 0.00 0.00 0.00 5.36
1491 1599 2.745281 TGTTAAATTCAGTAGTGCGGGC 59.255 45.455 0.00 0.00 0.00 6.13
1492 1600 4.000988 ACTGTTAAATTCAGTAGTGCGGG 58.999 43.478 0.00 0.00 43.17 6.13
1493 1601 6.903883 ATACTGTTAAATTCAGTAGTGCGG 57.096 37.500 10.27 0.00 46.71 5.69
1494 1602 8.532341 CAGTATACTGTTAAATTCAGTAGTGCG 58.468 37.037 22.48 0.00 46.71 5.34
1495 1603 8.818057 CCAGTATACTGTTAAATTCAGTAGTGC 58.182 37.037 27.07 4.74 46.71 4.40
1509 1618 6.598064 GCCACTAAACAATCCAGTATACTGTT 59.402 38.462 27.07 17.39 42.27 3.16
1543 1652 6.673154 ACACCACTCAAGTAAACTAAACAC 57.327 37.500 0.00 0.00 0.00 3.32
1688 1798 4.534168 CAGATCATGACATTTTCATCCGC 58.466 43.478 0.00 0.00 43.68 5.54
1757 1867 8.918202 AACAAGAAACTCATATAAGACAACCA 57.082 30.769 0.00 0.00 0.00 3.67
1792 1903 5.869579 TCTAACAAGTTTCCATGAGAAGCT 58.130 37.500 0.00 0.78 46.90 3.74
1858 1969 7.373441 CACTCGTACTTGCTTAAACAAAAGAAG 59.627 37.037 0.00 0.00 0.00 2.85
1919 2030 9.354673 CAAACAGGGTATCCTTGAATTACATAT 57.645 33.333 0.00 0.00 42.67 1.78
1949 2060 4.516698 GGATGATCACCGCTTTAACATCAT 59.483 41.667 0.00 0.00 35.75 2.45
2022 2778 5.972935 TCTGTATCTGAAACCTATTTCGCA 58.027 37.500 0.00 0.00 46.24 5.10
2177 2944 7.031226 ACGTTCATCAATATAGCAGCAATTT 57.969 32.000 0.00 0.00 0.00 1.82
2178 2945 6.624352 ACGTTCATCAATATAGCAGCAATT 57.376 33.333 0.00 0.00 0.00 2.32
2179 2946 6.484643 AGAACGTTCATCAATATAGCAGCAAT 59.515 34.615 28.78 0.00 0.00 3.56
2180 2947 5.817296 AGAACGTTCATCAATATAGCAGCAA 59.183 36.000 28.78 0.00 0.00 3.91
2181 2948 5.359756 AGAACGTTCATCAATATAGCAGCA 58.640 37.500 28.78 0.00 0.00 4.41
2182 2949 5.914085 AGAACGTTCATCAATATAGCAGC 57.086 39.130 28.78 0.00 0.00 5.25
2183 2950 8.748380 TGATAGAACGTTCATCAATATAGCAG 57.252 34.615 28.78 0.00 0.00 4.24
2184 2951 9.710900 AATGATAGAACGTTCATCAATATAGCA 57.289 29.630 29.70 21.40 31.48 3.49
2185 2952 9.964253 CAATGATAGAACGTTCATCAATATAGC 57.036 33.333 29.70 17.84 31.48 2.97
2333 3100 5.912892 ACCAGACCAAAATAAAACCAACAG 58.087 37.500 0.00 0.00 0.00 3.16
2334 3101 5.941555 ACCAGACCAAAATAAAACCAACA 57.058 34.783 0.00 0.00 0.00 3.33
2775 3548 7.296628 TGTGGCCATGTTCTTTATTAAACTT 57.703 32.000 9.72 0.00 0.00 2.66
2777 3550 7.412891 GCAATGTGGCCATGTTCTTTATTAAAC 60.413 37.037 9.72 0.00 0.00 2.01
2793 3566 1.246056 TTCTCTGCTGCAATGTGGCC 61.246 55.000 3.02 0.00 0.00 5.36
2800 3573 6.623549 GCATATAGTTTGTTTCTCTGCTGCAA 60.624 38.462 3.02 0.00 0.00 4.08
2898 3671 2.281484 GTCGCAGGTTTGGCCTCA 60.281 61.111 3.32 0.00 46.96 3.86
3028 3801 6.811253 ATAAAGATAAACTGGTGCGTTTGA 57.189 33.333 0.00 0.00 37.63 2.69
3033 3806 6.861055 ACACAAAATAAAGATAAACTGGTGCG 59.139 34.615 0.00 0.00 0.00 5.34
3168 3942 8.438513 CACATCAGTAACAATTTCTAGTCACAG 58.561 37.037 0.00 0.00 0.00 3.66
3207 3981 4.443457 CCACCCTGTCAATGATCGATAAGT 60.443 45.833 0.00 0.00 0.00 2.24
3212 3986 1.482182 CTCCACCCTGTCAATGATCGA 59.518 52.381 0.00 0.00 0.00 3.59
3244 4018 3.868077 GGCCACATCGAAGCTATGATATC 59.132 47.826 0.00 0.00 0.00 1.63
3276 4050 1.652563 AAAAAGCTTCGTCGGGCAC 59.347 52.632 0.00 0.00 0.00 5.01
3300 4074 4.508584 GGAAAGTTTCAGGATACCCAAGGT 60.509 45.833 17.16 0.00 40.16 3.50
3333 4107 2.348872 GCCACATTGCATCTTCGTATCG 60.349 50.000 0.00 0.00 0.00 2.92
3338 4112 0.742505 ATGGCCACATTGCATCTTCG 59.257 50.000 8.16 0.00 32.00 3.79
3391 4165 9.955102 AACGGAATAGAGGTTAAAACTTCTTAT 57.045 29.630 12.05 3.14 41.91 1.73
3414 4464 1.355971 CCTCGTGGGTCACATTAACG 58.644 55.000 0.00 0.00 33.40 3.18
3433 4483 3.264897 ATGAAGCATCGTCGCGGC 61.265 61.111 6.13 1.93 36.85 6.53
3460 4510 5.916661 ACGTCTCAGGTCAATGTACTTAT 57.083 39.130 0.00 0.00 0.00 1.73
3484 4534 6.919662 TGGATGTTTTCTACCGAATACGTATC 59.080 38.462 8.86 2.01 34.90 2.24
3488 4538 6.411630 TTTGGATGTTTTCTACCGAATACG 57.588 37.500 0.00 0.00 34.90 3.06
3497 4547 7.301868 AGCCTGAATTTTTGGATGTTTTCTA 57.698 32.000 0.00 0.00 0.00 2.10
3687 4738 1.599518 CCACGCAAGGTGTAGCCAA 60.600 57.895 0.00 0.00 45.52 4.52
3769 4820 9.293404 TGTTTATATACCTCTATCGCTTGTACT 57.707 33.333 0.00 0.00 0.00 2.73
3801 4852 2.488952 GATCTTCGGAAATCAGCTCCC 58.511 52.381 0.00 0.00 0.00 4.30
3827 4878 3.233980 CCATCTGGCGATCCCCGA 61.234 66.667 0.00 0.00 41.76 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.