>input_sequence_39172
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------------------------------------------------ATGGGGAACTTCCGCAAGCTCGGCCGCCACGC
CGCCCACCGCGTCTCCATGCTCAGGTATCCATCTCTCTGACCCTGTCGCTCC-ACCCATCTCCCGTTGGTTTCCGTTTCA
CCCTCGCTCTCTCCCTGACCCCACGGGCCATGGCTAACCCTCTCCCCGCCCCTTCCCACGTCGCTCG-GCAGGACGATGG
TGTCGCAGCTGGTAAAGCACGAGCGGATCGAGACCACCGTCGCCAAGGTAGCTTCCTGCCTCATGTAACTCCGGCATTTC
GTCGAACACCTTGCGGTGGGAGGAGTGCAGGGTTTCTGCGCCAGGGAATTTCGGTCCTTACTTTTTATGCGTTGCTTCTT
GCCATTTCAGGCGAAGGAGGTGCGGCGGAAGGCGGATCAGATGGTGCAGCTCGGGAAAGATGTACGTCCTTTAGCCGTTT
ACCAGCATTCACTATTCAGTAGTCACTAATCGCCACCTGCG-----------------GCCTGCCCTACTCTCCTAGTGC
CCGCACTACTGAA-TTTAACAGTATACTGGATTGTTTAGTGGCGCGTATTTGTGTTTAGTTTACTTGAGTGGTGTAATGA
AACCAGCCATCTTGATTAGATGGATAGGTTGT-CCTCGGCAGGGTTCGTCATATCTTGCGCTACTAGCTGTGTAGGACTC
CATTCATGGTTGATGCTCATACTCGCTATGCCGAATTGCGGATGAAAATGTCATGATCTGGACATATTGGCTTATGCATA
GAAACCCTTCACCTAATAATGTGATGTGGTTGTCTTATATGAG-TTTCTTGTTTCCTGTTGTAGCTTCTCATGGAAACTT
GTTAGATTGTTGAGGTTTTGACTACCTGAGTGGATATTAAGTGTTAGCCTTCTTTTGTTTAAGCAAGTACGAGTGAAACT
TCATGGAATCTGCTTTCATGAAGAAGTTAATATGTAATTCAAGGATACCCTGTTTGTCAATGATGTTAAAGCGGTGATCA
TCCGAAATGAATTCGCACAAATCTGA------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------ATGTCACCCTTTAACGATGAAGTCAATGCGAAATAGGTTTCAGATACAG
AAATTTTTTATGTGTAC-TG-AAAATTATATCATTCCACATTCCAGGAGTGTCTCTACTCCCTTGACTTAAATGCTCATG
CCCAGATATAGTGCATGATTTCTGTAGCTCTTTCTCATGAAACTTCC---------ATTGCTGAAATTGCTGCTATATTG
ATGAACGTTCTATCATTGTATAGGGTACACTAGATGCAGCAAGACGTGCCTCGGCATTTGTTCGGGGTGATGACGTCGTT
CACAAGTTATTCACAGAGCTTGCGTACCGCTACAAGTAAGTTTTACCCATGTTATGTATCTGTTGGTTTTATTTTGGTCT
GGTTAGCATGCTCAAAAGAACCTCTCAAGCTATATCTTATGCATCTTTGTTATTTTCTACTTATATCTAGGGATCGAGCT
GGTGGGTATACAAGACTATTGCGAACCAGGATACGAATTGGCGATGCTGCACCAATGGCTTACATCGAGTATGTTTGTAC
T-CATATACCTTACTGCACAAAATCATAGTTTAATTT--AAAAACAATACTTGCACTGTTTGTGTTGAGTATATTTTAGT
CTTCACATTCAAGTAGTGTGCTTCCACTACATGGTGCCAGTTAGTTCTCTTT-TGTATTCGTATTGTATAATAAAATTAG
ATTGAGGTCTGAAATTGCCTATAAAAAAATATTTTTCAAAGAAATGGTGATGCGACATGA--AAAAAAAAATTGTTTTCC
CATCTCTCTCACTCTGGTAAATGAACCAAGTTTAATAAAGAACATGGCCACATTGCAGCAGAGAAACAAACTATATGCCG
TGGTGAGACTGAATTCAACATCTGTTGCCAATGTCATACACAGGTTTGTCGACCGGGAGAATGAACTTCGTGAGGCCAAA
CCTGCGACTCCACCGCCACCCCAGCGTGCCCCTCTTGATCCATGGACCAAGTCCCATGCCAGCCAACAGTGGGCAGGGCC
TAAAGTCAGCCAGAACTCCAAAACAGAAGGGCTATGA-------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>chr1D_1_TraesCS1D01G284500
GACAACTCACCCAAGTGCGAGTTCCAAGAAGCAGCAGCGCGCTAGTGCCGTCGACGAGCGGCCGAGACGAAACTGACTGT
CCCAGGCTTTTAAAATCGACTTCACTCTTTTCACACAACCAATCTACAGAACCGGTTTTGGACCATAGTTTTTTTTTTAG
ACTAAACACACTTTATTGATCATAAAAGTTCATAGGAATACAATGAATGTCTGGTGGGTTTATAAGCCATAAGTGGCGTT
CATAATCTAGTCCGAAAGCGTGTTTAGGCCCAGACCCAACCATAACTATCTTTTCCACCATAAAACCAAACCAGACCCAA
CTGTTAGCTGGCTTGGCCCATATCAACTCGAACCAATTAAACCCATAACAGAAAACCAAACCAATTTAACCGGTTAATGA
AAAACCATTTCCAGATTTAAGCAGACTGGTGATCTCTATCAGATTTACTGAATTTGAGTGAAGATGTTGCGCAACTCATG
GTTATGACATTTGAGAAAAATATGACAGATTGTTTAACGTATGAAAAAAAGTACTCTACTATTTGTGCAGCT--------
--------------------------------------------------------------AAAAACAGTATCAAACAA
CTTTTCTTGCTCTTCCACTTTGGTTGCTAGAAGCATACTAGTACTACTTAAATACCCCTGTTAATTTTCATTTCC-----
--AGAGATGCAAATCAGTGTGATAATCCTAAGCTGCTTGTTCAATTCAACTGCCAACTATTTTTGAAGTGATTTGGTTTC
CAAAGTTGCAAATCAGTGTGATGGTCAGTGGATGTGGAGTGAGGGCAAATAGTCTTACACAT-TTTTTTGTTTTTTTAGA
GAAAACCTTTTTTTTAGAAAAACGGATGTACAGTAGCACAGGCCTTGTTAGAAATTGTGGCCTAAACAACGTCCTAATTT
TGGGCCCTGAAGGCCC-TAACTGAAGCACACAGTCAGAACCAAACAAACGGAGCCTGGCAGGCAGACCCGTCTGATCGCT
GACCGCCGGCCACTCTCCGCTCCT---------GCCGCCGCCGCCGCCATGGGGAACTTCCGCAAGCTCGGCCGCCACGC
CGCCCACCGCGTCTCCATGCTCAGGTATCCATCTCTCTGACCCTGTCGCTCC-ACCCATCTCCCGTTGGTTTCCGTTTCA
CCCTCGCTCTCTCCCTGACCCCACGGGCCATGGCTAACCCTCTCCCCGCCCCTTCCCACGTCGCTCG-GCAGGACGATGG
TGTCGCAGCTGGTAAAGCACGAGCGGATCGAGACCACCGTCGCCAAGGTAGCTTCCTGCCTCATGTAACTCCGGCATTTC
GTCGAACACCTTGCGGTGGGAGGAGTGCAGGGTTTCTGCGCCAGGGAATTTCGGTCCTTACTTTTTATGCGTTGCTTCTT
GCCATTTCAGGCGAAGGAGGTGCGGCGGAAGGCGGATCAGATGGTGCAGCTCGGGAAAGATGTACGTCCTTTAGCCGTTT
ACCAGCATTCACTATTCAGTAGTCACTAATCGCCACCTGCG-----------------GCCTGCCCTACTCTCCTAGTGC
CCGCACTACTGAA-TTTAACAGTATACTGGATTGTTTAGTGGCGCGTATTTGTGTTTAGTTTACTTGAGTGGTGTAATGA
AACCAGCCATCTTGATTAGATGGATAGGTTGT-CCTCGGCAGGGTTCGTCATATCTTGCGCTACTAGCTGTGTAGGACTC
CATTCATGGTTGATGCTCATACTCGCTATGCCGAATTGCGGATGAAAATGTCATGATCTGGACATATTGGCTTATGCATA
GAAACCCTTCACCTAATAATGTGATGTGGTTGTCTTATATGAG-TTTCTTGTTTCCTGTTGTAGCTTCTCATGGAAACTT
GTTAGATTGTTGAGGTTTTGACTACCTGAGTGGATATTAAGTGTTAGCCTTCTTTTGTTTAAGCAAGTACGAGTGAAACT
TCATGGAATCTGCTTTCATGAAGAAGTTAATATGTAATTCAAGGATACCCTGTTTGTCAATGATGTTAAAGCGGTGATCA
TCCGAAATGAATTCGCACAAATCTGA------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------ATGTCACCCTTTAACGATGAAGTCAATGCGAAATAGGTTTCAGATACAG
AAATTTTTTATGTGTAC-TG-AAAATTATATCATTCCACATTCCAGGAGTGTCTCTACTCCCTTGACTTAAATGCTCATG
CCCAGATATAGTGCATGATTTCTGTAGCTCTTTCTCATGAAACTTCC---------ATTGCTGAAATTGCTGCTATATTG
ATGAACGTTCTATCATTGTATAGGGTACACTAGATGCAGCAAGACGTGCCTCGGCATTTGTTCGGGGTGATGACGTCGTT
CACAAGTTATTCACAGAGCTTGCGTACCGCTACAAGTAAGTTTTACCCATGTTATGTATCTGTTGGTTTTATTTTGGTCT
GGTTAGCATGCTCAAAAGAACCTCTCAAGCTATATCTTATGCATCTTTGTTATTTTCTACTTATATCTAGGGATCGAGCT
GGTGGGTATACAAGACTATTGCGAACCAGGATACGAATTGGCGATGCTGCACCAATGGCTTACATCGAGTATGTTTGTAC
T-CATATACCTTACTGCACAAAATCATAGTTTAATTT--AAAAACAATACTTGCACTGTTTGTGTTGAGTATATTTTAGT
CTTCACATTCAAGTAGTGTGCTTCCACTACATGGTGCCAGTTAGTTCTCTTT-TGTATTCGTATTGTATAATAAAATTAG
ATTGAGGTCTGAAATTGCCTATAAAAAAATATTTTTCAAAGAAATGGTGATGCGACATGA--AAAAAAAAATTGTTTTCC
CATCTCTCTCACTCTGGTAAATGAACCAAGTTTAATAAAGAACATGGCCACATTGCAGCAGAGAAACAAACTATATGCCG
TGGTGAGACTGAATTCAACATCTGTTGCCAATGTCATACACAGGTTTGTCGACCGGGAGAATGAACTTCGTGAGGCCAAA
CCTGCGACTCCACCGCCACCCCAGCGTGCCCCTCTTGATCCATGGACCAAGTCCCATGCCAGCCAACAGTGGGCAGGGCC
TAAAGTCAGCCAGAACTCCAAAACAGAAGGGCTATGAGAATCAAACGCACCAGTTTATCTTTATTTTGTGTTTGTGAGA-
TTTTTTTATCTTTAGACGCGCTAATTAATTAGGAGATCCATTCTGTAAGAGACTAAAAACTTATGTTTCCACATGATATC
TATATTATTTGTCAAGGATCACTGTGACTAGAAATTGTTACTGATGTGTTAAGAGTTCATACTTATCGATCATTGACAGG
GTGGAGTTTGTCATGTTGATATCATAGCTTCGATGTGGCCATGTTGGCAGTGCCCGACGAAGCTTTTTTGCCGACCTTGG
GTATCCTGAAACTTTCCATAATCCCGCGATACGAAGATGCAATGTGGCCATGTTGGCACTTTGCTCTGTTGTGCTGAATT
CGTAAT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AAGAAGTTTT--------------------------------AACCTCTATTCCGTTAATGTGACCCACG
AGGCCGCGACGATGCTTCATGTGAAAAAAATAAGTACATTGACCTGAGACGTTGATACGTATTCGGTAGAAAACATCCAA
AAATTCAGGCTAGGGGGGACAGTTTGCCTGTCATTTTCAGGTGCAACATCTACTA-GTACATTTGACCCTTAACTAGACC
CACAAGGAAAGAATGAAGGGAAAAAAGATGTGCTATCTTGGCATCACCTGAACCGTGTGGCTGCTTCTATCTTGCAGCTC
AGAAACATGTGGCCAGTTTGGCTACACCTTGCGTGGGTTTTTCTTCTGTTATCCACATGACCAGATAAGTCCAAGCGATA
GGCTGAGAGTCATCGCAGCAGTACAAGCGATAGAGGTATATAAACATATTTGGGAGCTGATTTCCGAAGATCGGTTATCG
GGGATCGCCAGATGGACTGCGTTCTTCTGAGCTCACACTTGTCGTCCCATGCCACTGTTAACGCAAGGTAAAATTCTTAC
TTTCCTTTTCCTCTGTCGCTGAAGATCTTGCCGGGAACGAAGAATTTCGTGAATTTTCTCTGTGATTGCCATCTGTGCTG
ACTTTGGATTCCTGCAGGCTTCAGCAATGCTCTGT
>chr1B_420
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------AGCAGACTGGTGATCTCTATCATATTTACTGAATTGGAATGAAGACGTTGCGCAACTCATG
GTTATGACATTTGAGAAAAATATGACAGATTGTTTAACGTGTGAAAAAAAGTACTGGACTATTTGTGCAGCTAAAAAACA
ATATCAAACAACAGATTGTTTAATGTATGAAAAAAAAAAGTACGGGACTATTTGTGCAGCTAAAAAACAATATCAAACAA
CTTTTATTGCTCTTCCACTTTGGTTGCTAGAAGCATACTAGTA-------AATACCCCTGTTAATTTTCATTTCCAGAGT
ACAGAGTTGCAAATCAGTGTGATAATCCTAAGCTGCTTGTTCAATTCAACTGCCAATTATTTTTGAAGTGATTCAATTTC
CAGAGTTGCAAATCAATGTGATGGT-AGTGGATGTGGAGTGAGAGCAAATAGTCTTACACTTATTTTTTGTTTTTTTAGA
GAAAACCTTTTTTTTAGAAAAGCGGCTGTACAATAGCACAGGCCTTGTTAGAAATTGTGGCCTAAACAACGTCCTAATTT
TGGGCCCTGGAGGCCCATAACTGAAGCACACAGTCAGAACCAGACAAACGGAGCCTG----GCAGACCCGTCTGATCGCT
GACCGCCGGCCAGTCTCCGCTCCTGCCGCCGCCGCCGCCGCCGCCGCCATGGGGAACTTCCGCAAGCTCGGCCGTCACGC
CGCCCACCGCGTCTCCATGCTCAGGTATCCATCTCTCCGTCCCTGTCGCT-C-ACTCATCTGCCTTTTGTTTACGTTTCA
CTCTCGCTCTCTCCCTGACCCCACGGGCCATGGCCACCTCTCTCCCCGCCCCATCCCGACCTCTCGCCGCAGGACGATGG
TGTCGCAGCTGGTGAAGCACGAGCGGATCGAGACCACCGTCGCCAAGGTAGCTTCCTGCCTCATGTTACTCCGGCATTTC
GTCGAACACCTTGCGGTGGGAGGAGTGCAGGGTTTCTGCGCCAGGGAATTTCGGTCT---TTTTTTATGTGTTGCTTCTG
TCCATTTCAGGCGAAGGAGGTGCGGCGGAAGGCGGATCAGATGGTGCAGCTCGGCAAATATGTACGTCCTTGAGCCATTT
ACCAGTATTCACTATTCAGTAGTCACTAATCGCCACCTGCG-----------------GCCTG-----------------
---CACTACTGAA-TTTGACAGTATACTGGATTGTTTAGTGGCGCGTATTTATGTTTAGTTTACTTGAGTGGTGTAATGA
AACCAGCCATCTTGATTAGATGGACAGGTTGT-CCTCGCA--GGTTCATCATATCTTGCGCTACTAGCTGTGTAGGACTC
CATTCATGGTTGGTGCTCATACTCGCTATGCCGAATT-CGGATGGAAATGTCATGATCTGGACATATTGGCTTATGCATC
GAAACCCTTCGCCTAATAATGTGATGCGGTTGTCTTATATGAGTTTTCTTGTTTCCTGTTGTGGCTTCTCATGGAAACTT
GTTAGATTGTTGAGGTTTCGACTACCTGAGTGGATATTAAGTGTTAGCATTCTTTTGTTTAAGCAAGTACGAGTGAAACT
TCACGGAATCTGCTTTCATGAAGAAGTCAGTATGTGATTCAAGGATACCCTGTTTGTCAGTGATGTTACAGCGGTGATCA
TACGAAATGAATTCGCACAAATCTGA------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------ATGTCACCCCTTAACGAGGAAGTCAACGCGAAATAGGTTTCAGATACAG
AAATTTTTTATGTGTAC-TTCAAAATTATATCATTCCACATTCCAGGAGTGTCTCTACTCCCTTGACTTAAATGCTCATG
CCCAGATATAGTGCATGATTTCTGTAGCTCTTTCTCATGAAACTTCC---------ATTGCTG---------CTATATTG
ATGAATGTTCTATCATTGTATAGGGTACACTAGATGCAGCAAGACGTGCCTCGGCATTTGTTCGGGGTGATGATGTTGTT
CACAAGTTATTCACAGAGCTTGCGTACCGCTACAAGTAAGTTTTACCTATGTTATGTATGGGTTGGTTTTATTGTGGTCT
GGTTAGCATGCTCAAAAGAACCTCTCAAGCTACATCTTATGTATCTTTGTTATTTTCTACTTATATCTAGGGATCGAGCT
GGTGGGTATACAAGACTATTGTGAACCAGGATACGAATTGGCGATGCTGCACCAATGGCTTACATCGAGTATGTTTGTAC
T-CATATACCTTACTGCACAAAATCATAGTTTAATTTTCAAAAAAAATATTTGCACTGTTTGTGTTGAGTATATTTTAGT
CTTCACATTCAAGTAGTGTGCTTCCACTACATGGTTCCAGTTAGTTCTCTTT-TGTATTCGTATTGTATAATAAAATTAG
ATTGAGGTCTGAAATTGCCTAT-AAAAAATATTTTTCAAAGAAATGGTGATGTTATGACATGAAAAAAAAATTGTTTTCC
CATCTCTCTCACTCTGGTAAATGAACCGACTTTAATAAAGAACATTGCCACAATGCAGCAGAGAAATAAACTATATGCCG
TGGTGAGATTGAATTCAACATCTGTTGCCAATGTCATACACAGGTTTGTCGACCGGGAGAATGAACTTCGAGAGGCCAAA
CCTGCGACTCCACCGCCTCCCCAGCGTGCCCCTCTTGATGCATGGACCAAGTCCTGTGCCAGCCAACAGTGGGCAGGGCC
TAAAGTTAGCCAGAACTCTAAAACAGAAGGGCTATGAGAACCAAAAGCATC-GTTTATCTTTATTTTATGTTTGTGAGGT
TTTTTTTATCTTTAGACATGC----TAATTAGGAGATCCATTCTGTAAGAGACTAAAAACTTGTGTTTCCACATAATATC
TATATTATTTGTCAAGGATCGTTGTGACTAGAAATTGTTGCTGATGTGTTAAGAGTTCATGCGTACCGATCATTGACAGG
GTGGACTTTGTCATGTTCATATCATAGCTTCGATGTGGCCATGTTGGCAATGCCCGACGAAGTTTTTTTGTCGCCCTTGG
GTATCCTGAAAC-TTCCATAATCCCATGATATGAAGATGCAATGCGGCCATGTTGGCACTTTGCTCTGTTTTGCTGAATT
CGTATGGTTAAGACTCGGAACTGATCCTGAATTCCAAATGGTGTCTTACGATCTCGAGGAAGCTGAGCTCCCTCTCTGAT
CAGTTTACGTTCTTTCTCCCTTCAGCCACCCTCGAGGCGCAGGCAGCCTACCAAATCGTTGAGCTCAGTAGCCTCATTTA
CCTTCTTATTCAGTAAACCGTAGGCAAATGCTGTGAGCCTGTGACCATATTG--TACCTCAGAAAGGGGAGGCGGTCAGT
TTTGCAACTGAAGAAGTTTTAACCTGAGTCCTTTTGTTTACTGGGACACCTGAACCTCTATTCTGTTAATGTGAC-----
---CCGCGACGATGCTTCATGTGAAAAAA-TAAGTGCATTGACCTGAGACGTTTATATGTATTCGGGAGAAAACATCCAA
AATTTCAAGCTAAGGGGTACAGTTTGCCTGTCATTTTCAGGTGCAACATCTACTA-G--CATTTGACCCTTAACTAGACC
CAAACCGAAAGAATGAAGGAAAAAAAGGTGTGCTATCTTGGCATCACCTGAACCGTGTGGCTGCTTCTATCTTGCAGCTC
AGAAACATGTGGCCAGTCTGGCTACACATTGCGTGAGTTTTTCTTCTGTTATCCACATGACCAGATAAGTCCAAGCGATA
GGCTGAGAGTCATCGCAGCGGTACAAGCGATAGAGGTATATAAACATATTTTGGAGCTGATTTCCAGAGATCGGTTAACG
GGGATCGCCAGATGGACTGCGTTCTTCTGAGCTCACACTTGTCGTCCCATGCCACTGTTAACGCAAGGTAAAATTCTTAC
TTTCTTTTTCCTCTGTCGCTGAAGATCTTGCCGGGAACGAAGAATTTCGTGAATTTTCTCTGTGATTGCCATCTGTGCTG
ACTTTGGATTCCTGCAGGCTTCAGCAATGCTCTGT
>chr1A_420
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AGCAGACTGGTGATCTCTATCAGATTTACTGAATTTGAGTGAAGATGCTGCGCAACTCATG
GTTATGACATTTGAGAAAAATATGACAGATTATTTAACGTATGAAAAAAAGTACTGGACTATTTGTGCAGCT--------
-------------------------------------------------------------AAAAAACAATATGAAACAA
CTTTTTTTGCTCTTCCACTTTACTTA----------------A-------ATTACCTCTGTTAATTTTCATTT-------
-CAGAGTTGCAAATCAGTGTGATAATCCTAAGCTGCTTGTTCAATTCAACTGCCAATTATTTTTGAAGTGATTCAGTTTC
CAGAGTTGCAAATCAATGTGATGGTCAGTGGATGTGGAGTGAGAGCAAATAGTCTTACACTT-TTTTTTGGTTTTTTAGA
GAAAACCTTTTTTTTAGAAAAGCGGCTGTACAGTAGCACAGGCCTTGTTAGAAATTGTGGCCTAAAGAACGTCCTAATTT
TGGGCCCTGAAGGCCCATAACTGAAGCACACAGTCAGAACCAAACAAACGGAGCCTG----GCAGACCCGTCTGATCGCT
GACCGCCGGCCACTCTCCGCTC------CCGCCGCCGCCGCCGCCGCCATGGGGAACTTCCGTAAGCTCGGCCGCCACGC
CGCCCACCGCGTCTCGATGCTCAGGTATCCATCTCTCCGTCCCTGTCGCT-CCACCCATCTCCCTTTTGTTTCCGTTTCA
CCCTCGCTCTCTCCCTGACCCCACGGGCCATGGATGCCTCTCTCCCTGCCCCTTCCCGACCTCTCGCCGCAGGACGATGG
TGTCGCAGCTGGTGAAGCACGAGCGGATCGAGACCACCGTCGCCAAGGTAGCTTCCTGCCTCATCTTACTCCGGCATTTC
GTCGAACACCTTGCGGTGGGAGGAGTGCAGGGTTCGTGCGCCAGGGAATTTTGGCCCTTCTTTTTCATGGGTTGCTTCTT
GCCGTTTCAGGCGAAGGAGGTGCGGCGGAAGGCGGATCAGATGGTGCAGCTCGGCAAAGATGTACGCCCTTAAGTCGTTT
ACTAGA-------ATTCAGTATTCACTAATCGCCACCTCCCACCTACGGCCCTCCATTGCCTG-----------------
---CTGTACTGAATTTTGACAGTATACTAGATTGTT--------------------------ACTTGAGTAGTGTAGTGA
AACCAGCCATCTTGATTAGATGGATAGGTTTGCCCTCGGCAGGGTTCATATCCTGTGCGGCAAA---CTGTGTAGGAGTC
CATTCATGGTTGATGCTGATACTCGCTATGCTGATGA-------AAAATGGCATGATCTGGACACATTGGCTTATGCATA
GAAAACCTTCACCTTATAGTGAGGTGCAGTTGTCTTATATGAGTTTCTTGTTGTAGTC--------TCTCGTGGAAACTT
ATTAGCTTGCTGAGATTTTGACTACCTGATTAGATGTTCAGTGTTAGCATTCTTTTGTTTAAGCAATTACGAGTGAAACT
TCATGGAAGCTGCTTTCATGAAGAGGTCAGTATGTAATTCAAGGATACCCTGTTTGTCAGTGATGTTACAGCGGTGATCA
TACGAAATGAATTCGTACAAATCTGATGACGCGTTTGGTTCGAGCAGCGGTAACGTATTCAGTATTGTAATGAGAATACA
CTGTATTAGATCAGAGATAAGCGAATACGTGATGTGTTTGGTTCACGCAAGGGAAGAGGAAACAGTGGCACCGCCGCCGC
TGGCCAGCCTTGTAGAAGATGCCCGAGGGACGGCTGCGGGGATGGCTTGCGATGAGAAACGAGATCACCGGCTGCTCACA
GCGGCGCTACTGCTCACGGCGGGGAAGGGAGATCGGCGGCGCAGCTCACGGCGGTGGCGGCGAAGGGACATCGGCGGCGC
TGCTCATGGCGGTGGCAATGAAGGGACACCGGCAGCGTTGCTGCTCAAGGAGGCGGCGAATTGATACGGCGGCGCTGCTG
CTCATGGCGGAGGGGGGTCGCCGGCGGTGCTGCTCATGGTGGAGGGAGATCACCGGCGCTACTGCCTGTTCCCCGCGGTG
AAGAAAACGATCCGGAAGAGTGGTGGTGTTATTCCATACCGGGCTGTACCGGGTGTTTTCAGTTTAGTGAAGAATGATTT
GCGATTACATGGTGTCTGAAATCAACCGAATCCAAACAAACGCCTGTAACGCAATCGTGAGCCGGTGTAATCGGGAGACA
GCGTAGAAGTCGCGAACCAAACGCGTCGTGAATGTCACCCTGTAACGATGAAGTTAACGCAAAATAGGTTTCAGATGCAG
AAAATTTTGTTGTGTACATG-AAAATTGTATCATTCCACATTCCAGGAGTGTCCCTACTCCCTTGACTTAAATGCCCATG
CCCGGATATAGTGCATGATTTATGAAGCTCTTTCTCTTGAAACTTCCGTTCCTGAAATTGCTG---------GTATATTG
ATGGACATTCTATTATTTTATAGGGTACACTAGATGCAGCAAGACGTGCCTCGGCATTTGTTCGAGGTGATGACGTCGTT
CACAAGTTATTCACAGAGCTTGCGTACCGTTACAAATAAGTTTTACCTATGTTATGGGTTGGTTTCA---ATTTTGGTCT
GGTTAGCATGCTCAGAAGAACCTCTCAAGCTATATCTTATGTATCTTTGTTATTTTCTACTTATATCTAGGGATCGAGCT
GGTGGGTATACAAGACTATTGCGAACCAGGATACGAATTGGCGATGCTGCACCAATGGCTTACATCGAGTATGTTTGTAC
TCCATATACCTTACTGCACAAAATCATAGTTTAATTTTCAAAAAAAGTACTTTCACTGTTTGTGTTGACTATGG----GT
CTTCACATTCAAGTAGTGTGCTTTCACTACATGGTGCCAGTTAGTTCTCTTTGTGTATTCGTATTGTATAATAAACTTAG
ATTGAGGTCTGAATTTGCCTATAAAAAAATATTTTTCAAAGGAATGGTGATGCCATGACATG-AAAAAAAATTGTTTTCC
CATCTCTCTCACTCTGGTAAATGAACCGACTTTAATAAAGAACAT-GCCACAATGCAGCAGAGAAACAAACTATATACCG
TGGTGAGATTGAATTCAACATCTGTTGCCAATGTCATACACAGGTTTGTCGACCGGGAGAATGAACTTCGAGAGGCCAAA
CCTGCGACTCCACCGCCTCCCCAGCGTGCCCCTCTTGATCCATGGACCAAGTCCCATGCCAGCCAACAGTGGGCAGGGCC
TAAAGTCAGCCAGAAGTCCAAAACAGAAGGGCTATGAGAACCAAAAGCATC-GTTTATCTTTATTTTATGTTTGTGAGAT
TTTTTTTATCTTTAGACGCGC----TAATTAGGAGATCCATTCTGTAAGAGACTA-------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr1A_3146
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------TC
TATATTATTTGTCAAGGATCATTGTGACTAGAAATGGTTGCTGATGTGCTAAGAGTTCATGCTTACCGATCATTAAC-GG
GTGGAGTTTGTCATGTTAATATCATTGCTTCGATGTGGTCATGTTGGCAATGCCTGATGAAGCTTTTTTGCTGCCCCTGG
GTATCCTGAAACTTTCCATAATCCCGTGATATGAAGATGCAATGAGGCCATGTTGGCACTTTGCTCTGTTGTGCTGAATT
CGTATGGTTGAGACTCGGAACTGATCCTGAATTGCAAATGGTGTCTTATGATCTCGAGGAAGCTGAGCTCCCTCC--GAT
CAGTTTACGTTTTTTCTCCCTTCAGCCACCCTCGAGGCGCAGGCAGCCTACCATATCGTCGAGCTCAGTACCCTCATTTA
CCTTCTTATTCAGTAAACTGTAAGCAAATGTTGCGAGCCTGTGACCAAATTGTATACCTCAGAAAGGGGAGGCGGTCAAT
TTTGCAACTGAAGAAGTTTTAACCTCAGT-CTTTTGTTTTCTGGGACACCTGAACCTCTATTCTGTTAATGTGAC-----
---CCGCGACGATGCTTCATGTGAAAAAA-TAAGTACATTGACCTGAGACGTTTATATGTATTCGGGAGAAAACATCCAA
AATTTCAGGCTAAGGGGTACACTTTTCCTGTCATTTTCAGGTGCAACATCTACTACGTACATTTGACCCTTAACTAGACC
CACAAGGAAAGAATGAAGGGAAAAAGGATGTGCTATCTTGGCATCACCTGAACCGTGTGGCTGCTTCTATCTTGCCGCAC
AGAAACATGTGGCCAGTCTGGCTACACATTGCGTGGGTTTTTCTTCTGTTATCCACATGACCAGATAAGTCCAAGCGATA
GGCTGAGATTTGTCGCGACGATGCAGGCGATAGAGGTATATAAACATATTTCGGAGCTGATTTCAGAAGATCGGTTAACG
GGGATCGCCAGATGGACTGCGTTCTTCTGAGCTCACACTTGTCGTCCCATGCCACTGTTAACGCAAGGTAAAATTCTTAC
TTTCCTTTTCCTCTGTCGCTGGAGATCTTGCCGGGAACGAAGAATTTCGTGAATTTTCTCTGTGATTGCCATCTGTGCTG
ACTTTGGATTCCTGCAGGCTTCAGCAATGCTCTGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-------------------------------------------------------------
-------------------------------------------------------SS-----------------------
---------------------------------------------------------------------S----------
-----S-------------------------------------SSSSSSS------------------------------
------S-------------------------------------------------S----------------SS-----
--S------------S---------------------------S----------------S-------------------
---------------------S---S------------------------------------------------------
---------------------------------------------------------SSSS-------------------
--------------------------------------------------------------------------------
-------------------------------------S-S----------S-------------S--S------------
------------------------------------S-S------------------SSSSSSSSSS-------------
-------------S----------------------------------------------------S-------------
-----------------------------------------------------------SS--------S----------
------------------------------------------------------S----------------S--------
-----S---------------------------------------------------------SSSSSSSSSSSSSSSSS
SSS--------------S---------------------------------S----------------------------
-----------------------------------------------S--------------------------------
-------------------------------------S------------------------------------------
--------------------------S-----------------------------------S-----------------
------------------------------------------------S-------------------------------
---------------------------S-S-----------------------------S--------S-----------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------SSSSSSSSS--------
--------------------------------------------------------------------------------
-----------------------------------------------S-----------SS-------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S-SSSS---------------------
---------------------------S-S---------------S------S---------------------------
--------S-------------------------------------------------------------S---------
-----------------S--------------------------------------------------------------
----------------------------------------S----S---S-S---------------S------------
---------------------SSSS-------------------------------------S-----------S-----
---------------------S-----------------S--------------------S----S--------------
-----------------S-------------------------------S-----------------------S------
--------------------------S----S------------S-----------------------------------
----SS--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S-----------SSSSS
SSS--------------------------S-----------------------S---S--------S-------------
--S---------S----S--------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S---------S----------------------------------------------------
-------------------S-------------------------------S-------------------------S--
--------------------------------------------------------------------------------
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-----------------------------------
>forward_332
--------------------------------------------------------------------------------
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------------------------------------------------------------------------AGACCCAA
CTGTTAGCTGGC--------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_1347
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AACTCCGGCATTTC
GTCGAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------
>forward_333
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GACCCAA
CTGTTAGCTGGCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_1586
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CTACTCTCCTAGTGC
CCGCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_337
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CAA
CTGTTAGCTGGCTTGGC---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_1587
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TACTCTCCTAGTGC
CCGCAC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>forward_1171
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TCTCTCTGACCCTGTCGCTC-----------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_3566
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------GGCCACATTGCAGCAGAGAA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_1598
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GCCTGCCCTACTCTCCTAGT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>reverse_4112
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CGAAGATGCAATGTGGCCAT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
