Multiple sequence alignment - TraesCS1D01G283200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G283200 chr1D 100.000 2684 0 0 1 2684 381045861 381048544 0.000000e+00 4957.0
1 TraesCS1D01G283200 chr1B 91.575 2730 103 52 1 2684 511189535 511192183 0.000000e+00 3650.0
2 TraesCS1D01G283200 chr1B 94.937 79 4 0 2251 2329 622054615 622054537 1.010000e-24 124.0
3 TraesCS1D01G283200 chr1A 94.964 2105 48 27 1 2068 481756332 481758415 0.000000e+00 3247.0
4 TraesCS1D01G283200 chr1A 86.355 535 24 16 2189 2684 481758441 481758965 3.040000e-149 538.0
5 TraesCS1D01G283200 chr1A 100.000 34 0 0 2153 2186 481758432 481758465 2.230000e-06 63.9
6 TraesCS1D01G283200 chr5D 78.895 507 54 24 1841 2336 524290408 524290872 7.270000e-76 294.0
7 TraesCS1D01G283200 chr5D 82.653 294 32 10 1841 2122 523096073 523095787 2.670000e-60 243.0
8 TraesCS1D01G283200 chr7D 84.354 294 27 10 1841 2122 592850765 592850479 1.220000e-68 270.0
9 TraesCS1D01G283200 chr2D 84.014 294 28 10 1841 2122 614004671 614004957 5.700000e-67 265.0
10 TraesCS1D01G283200 chr4D 84.266 286 28 9 1849 2122 481401165 481400885 2.050000e-66 263.0
11 TraesCS1D01G283200 chr4D 94.624 93 5 0 2244 2336 458010628 458010536 7.740000e-31 145.0
12 TraesCS1D01G283200 chr4D 94.624 93 5 0 2244 2336 481400811 481400719 7.740000e-31 145.0
13 TraesCS1D01G283200 chr6A 83.673 294 29 10 1841 2122 601566860 601566574 2.650000e-65 259.0
14 TraesCS1D01G283200 chr6A 93.548 93 6 0 2244 2336 601566500 601566408 3.600000e-29 139.0
15 TraesCS1D01G283200 chr7B 82.746 284 35 9 1849 2122 723873155 723872876 9.600000e-60 241.0
16 TraesCS1D01G283200 chr5B 86.099 223 20 7 1841 2057 699305264 699305047 2.080000e-56 230.0
17 TraesCS1D01G283200 chr5A 96.203 79 3 0 2251 2329 649694724 649694646 2.170000e-26 130.0
18 TraesCS1D01G283200 chr4B 96.203 79 3 0 2251 2329 154977285 154977207 2.170000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G283200 chr1D 381045861 381048544 2683 False 4957.000000 4957 100.000 1 2684 1 chr1D.!!$F1 2683
1 TraesCS1D01G283200 chr1B 511189535 511192183 2648 False 3650.000000 3650 91.575 1 2684 1 chr1B.!!$F1 2683
2 TraesCS1D01G283200 chr1A 481756332 481758965 2633 False 1282.966667 3247 93.773 1 2684 3 chr1A.!!$F1 2683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 1.160137 GATTGTTGCTGCTTCTCCGT 58.84 50.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1748 1.639635 AATGGATCGGGCAAGAGGCT 61.64 55.0 0.0 0.0 44.01 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 2.092323 CAGTCTCCGACAGGTCACATA 58.908 52.381 0.00 0.00 39.05 2.29
214 215 1.160137 GATTGTTGCTGCTTCTCCGT 58.840 50.000 0.00 0.00 0.00 4.69
241 242 4.582240 GGATCATTGGTTTCCTTCAGGATC 59.418 45.833 0.00 0.00 44.98 3.36
242 243 4.656100 TCATTGGTTTCCTTCAGGATCA 57.344 40.909 0.00 0.00 44.98 2.92
243 244 4.996793 TCATTGGTTTCCTTCAGGATCAA 58.003 39.130 0.00 3.30 44.98 2.57
244 245 4.766891 TCATTGGTTTCCTTCAGGATCAAC 59.233 41.667 0.00 0.00 44.98 3.18
245 246 4.453480 TTGGTTTCCTTCAGGATCAACT 57.547 40.909 9.36 0.00 44.98 3.16
246 247 3.754965 TGGTTTCCTTCAGGATCAACTG 58.245 45.455 9.36 0.00 44.98 3.16
247 248 2.489722 GGTTTCCTTCAGGATCAACTGC 59.510 50.000 9.36 0.00 44.98 4.40
248 249 3.416156 GTTTCCTTCAGGATCAACTGCT 58.584 45.455 0.00 0.00 44.98 4.24
249 250 2.775911 TCCTTCAGGATCAACTGCTG 57.224 50.000 0.00 0.00 44.23 4.41
250 251 1.280133 TCCTTCAGGATCAACTGCTGG 59.720 52.381 0.00 0.19 43.15 4.85
284 295 7.553881 AACATGTTTTCGAGGGAGTATAATG 57.446 36.000 4.92 0.00 0.00 1.90
472 486 9.475620 TCTCATTATTAGGTCTGAAACTACTCA 57.524 33.333 0.00 0.00 0.00 3.41
511 525 3.567164 CCTATGATCATGTGCCACCTTTC 59.433 47.826 18.72 0.00 0.00 2.62
549 563 2.103094 AGCTTCGTTGCTATGATGGCTA 59.897 45.455 13.42 0.00 42.10 3.93
550 564 2.872245 GCTTCGTTGCTATGATGGCTAA 59.128 45.455 1.71 0.00 0.00 3.09
593 607 7.439655 CAGGGAGAGAAAGCATACACTAATTAC 59.560 40.741 0.00 0.00 0.00 1.89
1176 1223 2.660552 AAGTCGTTCACGGTGCGG 60.661 61.111 2.51 0.00 40.29 5.69
1455 1502 2.176273 CAAGAAGCTCATCCGCGGG 61.176 63.158 27.83 10.69 34.40 6.13
1695 1742 1.228063 CCAATGATCCTGCTCCCGG 60.228 63.158 0.00 0.00 0.00 5.73
1700 1747 3.140225 GATCCTGCTCCCGGTCGAC 62.140 68.421 7.13 7.13 0.00 4.20
1701 1748 3.957435 ATCCTGCTCCCGGTCGACA 62.957 63.158 18.91 0.00 0.00 4.35
1711 1758 2.435059 GGTCGACAGCCTCTTGCC 60.435 66.667 18.91 0.00 42.71 4.52
1946 1993 6.567602 AGTATACTCCTGCCTCTGAAATTT 57.432 37.500 0.00 0.00 0.00 1.82
1974 2021 6.213959 TCATCAATGAAGAAGCCATGTGCG 62.214 45.833 0.00 0.00 38.39 5.34
2013 2069 4.206477 TCATGTAGCATTGTACAGCACT 57.794 40.909 9.50 4.68 36.36 4.40
2041 2098 2.030805 GCCACAGCTCTTTTTGTACAGG 60.031 50.000 0.00 0.00 35.50 4.00
2093 2150 3.008923 TGTGTTCCTCCATGCACTCATTA 59.991 43.478 0.00 0.00 33.44 1.90
2186 2246 7.930217 TCTTCTGGAAAAACTCTGTTGTTATG 58.070 34.615 0.00 0.00 0.00 1.90
2187 2247 6.633500 TCTGGAAAAACTCTGTTGTTATGG 57.367 37.500 0.00 0.00 0.00 2.74
2188 2248 6.126409 TCTGGAAAAACTCTGTTGTTATGGT 58.874 36.000 0.00 0.00 0.00 3.55
2189 2249 6.262273 TCTGGAAAAACTCTGTTGTTATGGTC 59.738 38.462 0.00 0.00 0.00 4.02
2190 2250 6.126409 TGGAAAAACTCTGTTGTTATGGTCT 58.874 36.000 0.00 0.00 0.00 3.85
2191 2251 6.605594 TGGAAAAACTCTGTTGTTATGGTCTT 59.394 34.615 0.00 0.00 0.00 3.01
2192 2252 7.776030 TGGAAAAACTCTGTTGTTATGGTCTTA 59.224 33.333 0.00 0.00 0.00 2.10
2193 2253 8.793592 GGAAAAACTCTGTTGTTATGGTCTTAT 58.206 33.333 0.00 0.00 0.00 1.73
2194 2254 9.612620 GAAAAACTCTGTTGTTATGGTCTTATG 57.387 33.333 0.00 0.00 0.00 1.90
2195 2255 7.687941 AAACTCTGTTGTTATGGTCTTATGG 57.312 36.000 0.00 0.00 0.00 2.74
2196 2256 6.620877 ACTCTGTTGTTATGGTCTTATGGA 57.379 37.500 0.00 0.00 0.00 3.41
2197 2257 7.016153 ACTCTGTTGTTATGGTCTTATGGAA 57.984 36.000 0.00 0.00 0.00 3.53
2198 2258 7.458397 ACTCTGTTGTTATGGTCTTATGGAAA 58.542 34.615 0.00 0.00 0.00 3.13
2199 2259 7.942341 ACTCTGTTGTTATGGTCTTATGGAAAA 59.058 33.333 0.00 0.00 0.00 2.29
2200 2260 8.698973 TCTGTTGTTATGGTCTTATGGAAAAA 57.301 30.769 0.00 0.00 0.00 1.94
2201 2261 8.573035 TCTGTTGTTATGGTCTTATGGAAAAAC 58.427 33.333 0.00 0.00 0.00 2.43
2202 2262 8.472007 TGTTGTTATGGTCTTATGGAAAAACT 57.528 30.769 0.00 0.00 0.00 2.66
2203 2263 8.573035 TGTTGTTATGGTCTTATGGAAAAACTC 58.427 33.333 0.00 0.00 0.00 3.01
2204 2264 8.793592 GTTGTTATGGTCTTATGGAAAAACTCT 58.206 33.333 0.00 0.00 0.00 3.24
2205 2265 8.335532 TGTTATGGTCTTATGGAAAAACTCTG 57.664 34.615 0.00 0.00 0.00 3.35
2206 2266 7.942341 TGTTATGGTCTTATGGAAAAACTCTGT 59.058 33.333 0.00 0.00 0.00 3.41
2207 2267 8.793592 GTTATGGTCTTATGGAAAAACTCTGTT 58.206 33.333 0.00 0.00 0.00 3.16
2208 2268 6.633500 TGGTCTTATGGAAAAACTCTGTTG 57.367 37.500 0.00 0.00 0.00 3.33
2209 2269 6.126409 TGGTCTTATGGAAAAACTCTGTTGT 58.874 36.000 0.00 0.00 0.00 3.32
2210 2270 6.605594 TGGTCTTATGGAAAAACTCTGTTGTT 59.394 34.615 0.00 0.00 0.00 2.83
2211 2271 7.776030 TGGTCTTATGGAAAAACTCTGTTGTTA 59.224 33.333 0.00 0.00 0.00 2.41
2212 2272 8.793592 GGTCTTATGGAAAAACTCTGTTGTTAT 58.206 33.333 0.00 0.00 0.00 1.89
2213 2273 9.612620 GTCTTATGGAAAAACTCTGTTGTTATG 57.387 33.333 0.00 0.00 0.00 1.90
2214 2274 8.792633 TCTTATGGAAAAACTCTGTTGTTATGG 58.207 33.333 0.00 0.00 0.00 2.74
2215 2275 6.976934 ATGGAAAAACTCTGTTGTTATGGT 57.023 33.333 0.00 0.00 0.00 3.55
2216 2276 6.385649 TGGAAAAACTCTGTTGTTATGGTC 57.614 37.500 0.00 0.00 0.00 4.02
2217 2277 6.126409 TGGAAAAACTCTGTTGTTATGGTCT 58.874 36.000 0.00 0.00 0.00 3.85
2218 2278 6.605594 TGGAAAAACTCTGTTGTTATGGTCTT 59.394 34.615 0.00 0.00 0.00 3.01
2219 2279 7.776030 TGGAAAAACTCTGTTGTTATGGTCTTA 59.224 33.333 0.00 0.00 0.00 2.10
2287 2347 1.202330 AGGGTGCAGAATCAGAGAGG 58.798 55.000 0.00 0.00 0.00 3.69
2344 2407 5.680408 GCAACCATCTCGTGTAGTATTGGTA 60.680 44.000 0.00 0.00 34.87 3.25
2447 2518 1.289231 AGGCAGATCCACAGAGGTAGA 59.711 52.381 0.00 0.00 39.02 2.59
2448 2519 1.686052 GGCAGATCCACAGAGGTAGAG 59.314 57.143 0.00 0.00 39.02 2.43
2472 2546 2.673368 GCTTGGACTTGGAATAGTGACG 59.327 50.000 0.00 0.00 0.00 4.35
2481 2558 4.729227 TGGAATAGTGACGTATTCTGCA 57.271 40.909 8.31 0.00 38.81 4.41
2503 2580 5.417029 CACGAATGCATGCAAAAATAATCG 58.583 37.500 26.68 23.64 0.00 3.34
2508 2585 5.058149 TGCATGCAAAAATAATCGAGTGT 57.942 34.783 20.30 0.00 0.00 3.55
2510 2587 6.027131 TGCATGCAAAAATAATCGAGTGTAC 58.973 36.000 20.30 0.00 0.00 2.90
2512 2589 6.692681 GCATGCAAAAATAATCGAGTGTACAT 59.307 34.615 14.21 0.00 0.00 2.29
2546 2658 4.906065 TCATACCGTGGATGTGTACTAC 57.094 45.455 0.00 0.00 0.00 2.73
2565 2677 2.572290 ACTCGGTTTTCACTTGGGAAG 58.428 47.619 0.00 0.00 0.00 3.46
2584 2696 6.183361 TGGGAAGTATACTAGAGTAGACCCAG 60.183 46.154 5.65 0.00 42.05 4.45
2649 2776 0.842030 TTGGGCATCCAGGACACTCT 60.842 55.000 0.00 0.00 45.04 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.322355 CCACAGATGGCACTTCCTAG 57.678 55.000 0.00 0.00 39.82 3.02
65 66 6.071952 GGATCTTGACAAACAAAAGGCTATCA 60.072 38.462 0.00 0.00 38.08 2.15
120 121 0.610232 AAGCGAATGCCCTTGAAGCT 60.610 50.000 0.00 0.00 44.31 3.74
214 215 3.333381 TGAAGGAAACCAATGATCCCTCA 59.667 43.478 0.00 0.00 32.60 3.86
241 242 2.495366 TACGTACCCGCCAGCAGTTG 62.495 60.000 0.00 0.00 37.70 3.16
242 243 1.818959 TTACGTACCCGCCAGCAGTT 61.819 55.000 0.00 0.00 37.70 3.16
243 244 2.277591 TTACGTACCCGCCAGCAGT 61.278 57.895 0.00 0.00 37.70 4.40
244 245 1.808390 GTTACGTACCCGCCAGCAG 60.808 63.158 0.00 0.00 37.70 4.24
245 246 1.890625 ATGTTACGTACCCGCCAGCA 61.891 55.000 0.00 0.00 37.70 4.41
246 247 1.153509 ATGTTACGTACCCGCCAGC 60.154 57.895 0.00 0.00 37.70 4.85
247 248 0.108520 ACATGTTACGTACCCGCCAG 60.109 55.000 0.00 0.00 37.70 4.85
248 249 0.321021 AACATGTTACGTACCCGCCA 59.679 50.000 9.97 0.00 37.70 5.69
249 250 1.441738 AAACATGTTACGTACCCGCC 58.558 50.000 12.39 0.00 37.70 6.13
250 251 2.472723 CGAAAACATGTTACGTACCCGC 60.473 50.000 21.69 3.15 37.70 6.13
284 295 2.348666 CCAACGACAGAATTCGATCACC 59.651 50.000 11.18 0.00 41.78 4.02
511 525 6.276847 ACGAAGCTAAAGATCATACTCCTTG 58.723 40.000 0.00 0.00 0.00 3.61
549 563 2.228822 CCTGATGCTTTTTAGTGCGGTT 59.771 45.455 0.00 0.00 0.00 4.44
550 564 1.812571 CCTGATGCTTTTTAGTGCGGT 59.187 47.619 0.00 0.00 0.00 5.68
593 607 5.437060 ACTTTGGCCCATGTGTATTAGTAG 58.563 41.667 0.00 0.00 0.00 2.57
604 621 1.747355 CTCTGCTTACTTTGGCCCATG 59.253 52.381 0.00 0.00 0.00 3.66
637 656 0.800683 TCGCGATTGTCTAAGTGCGG 60.801 55.000 3.71 0.00 41.12 5.69
640 659 5.276395 CCAAGTTATCGCGATTGTCTAAGTG 60.276 44.000 28.81 14.35 0.00 3.16
646 665 4.336532 AAACCAAGTTATCGCGATTGTC 57.663 40.909 28.81 16.94 0.00 3.18
994 1037 2.202987 CTCCTCTGCCATGGCGAC 60.203 66.667 30.87 6.57 45.51 5.19
1673 1720 1.895707 GAGCAGGATCATTGGGCCG 60.896 63.158 0.00 0.00 0.00 6.13
1695 1742 2.435059 GGGCAAGAGGCTGTCGAC 60.435 66.667 9.11 9.11 44.01 4.20
1701 1748 1.639635 AATGGATCGGGCAAGAGGCT 61.640 55.000 0.00 0.00 44.01 4.58
1711 1758 1.645455 CGCTGCAGAAATGGATCGG 59.355 57.895 20.43 0.00 0.00 4.18
1974 2021 6.690194 ACATGAAAATGCCTCTCATAGAAC 57.310 37.500 0.00 0.00 34.33 3.01
1975 2022 6.484643 GCTACATGAAAATGCCTCTCATAGAA 59.515 38.462 0.00 0.00 34.33 2.10
2041 2098 2.223782 TGTGCACAGCAATTTCCAGAAC 60.224 45.455 17.42 0.00 41.47 3.01
2120 2177 8.122952 GCATGTGGTTTACAATCTCATACTTAC 58.877 37.037 0.00 0.00 43.77 2.34
2121 2178 8.046708 AGCATGTGGTTTACAATCTCATACTTA 58.953 33.333 0.00 0.00 43.77 2.24
2122 2179 6.886459 AGCATGTGGTTTACAATCTCATACTT 59.114 34.615 0.00 0.00 43.77 2.24
2123 2180 6.317140 CAGCATGTGGTTTACAATCTCATACT 59.683 38.462 0.00 0.00 43.77 2.12
2186 2246 6.635030 ACAACAGAGTTTTTCCATAAGACC 57.365 37.500 0.00 0.00 0.00 3.85
2187 2247 9.612620 CATAACAACAGAGTTTTTCCATAAGAC 57.387 33.333 0.00 0.00 33.07 3.01
2188 2248 8.792633 CCATAACAACAGAGTTTTTCCATAAGA 58.207 33.333 0.00 0.00 33.07 2.10
2189 2249 8.576442 ACCATAACAACAGAGTTTTTCCATAAG 58.424 33.333 0.00 0.00 33.07 1.73
2190 2250 8.472007 ACCATAACAACAGAGTTTTTCCATAA 57.528 30.769 0.00 0.00 33.07 1.90
2191 2251 7.942341 AGACCATAACAACAGAGTTTTTCCATA 59.058 33.333 0.00 0.00 33.07 2.74
2192 2252 6.777580 AGACCATAACAACAGAGTTTTTCCAT 59.222 34.615 0.00 0.00 33.07 3.41
2193 2253 6.126409 AGACCATAACAACAGAGTTTTTCCA 58.874 36.000 0.00 0.00 33.07 3.53
2194 2254 6.635030 AGACCATAACAACAGAGTTTTTCC 57.365 37.500 0.00 0.00 33.07 3.13
2195 2255 9.612620 CATAAGACCATAACAACAGAGTTTTTC 57.387 33.333 0.00 0.00 33.07 2.29
2196 2256 8.576442 CCATAAGACCATAACAACAGAGTTTTT 58.424 33.333 0.00 0.00 33.07 1.94
2197 2257 7.942341 TCCATAAGACCATAACAACAGAGTTTT 59.058 33.333 0.00 0.00 33.07 2.43
2198 2258 7.458397 TCCATAAGACCATAACAACAGAGTTT 58.542 34.615 0.00 0.00 33.07 2.66
2199 2259 7.016153 TCCATAAGACCATAACAACAGAGTT 57.984 36.000 0.00 0.00 35.55 3.01
2200 2260 6.440647 TCTCCATAAGACCATAACAACAGAGT 59.559 38.462 0.00 0.00 0.00 3.24
2201 2261 6.878317 TCTCCATAAGACCATAACAACAGAG 58.122 40.000 0.00 0.00 0.00 3.35
2202 2262 6.867519 TCTCCATAAGACCATAACAACAGA 57.132 37.500 0.00 0.00 0.00 3.41
2212 2272 8.781414 GGATAAACTCCAGTCTCCATAAGACCA 61.781 44.444 1.70 0.00 44.04 4.02
2213 2273 6.463190 GGATAAACTCCAGTCTCCATAAGACC 60.463 46.154 1.70 0.00 44.04 3.85
2214 2274 6.517605 GGATAAACTCCAGTCTCCATAAGAC 58.482 44.000 0.00 0.00 44.54 3.01
2215 2275 6.732896 GGATAAACTCCAGTCTCCATAAGA 57.267 41.667 0.00 0.00 44.26 2.10
2240 2300 4.710423 TCCTCTCTCGAATCTTGACTTG 57.290 45.455 0.00 0.00 0.00 3.16
2246 2306 5.337169 CCTTCACTTTCCTCTCTCGAATCTT 60.337 44.000 0.00 0.00 0.00 2.40
2287 2347 2.012673 CAGATAAGCAGCACCCACTTC 58.987 52.381 0.00 0.00 0.00 3.01
2344 2407 7.123997 CAGAGCATATATTCATCCTCACTACCT 59.876 40.741 0.00 0.00 0.00 3.08
2447 2518 2.307098 ACTATTCCAAGTCCAAGCAGCT 59.693 45.455 0.00 0.00 0.00 4.24
2448 2519 2.421424 CACTATTCCAAGTCCAAGCAGC 59.579 50.000 0.00 0.00 0.00 5.25
2481 2558 5.339177 TCGATTATTTTTGCATGCATTCGT 58.661 33.333 23.37 11.02 0.00 3.85
2501 2578 2.956333 CCCTGGTCATATGTACACTCGA 59.044 50.000 0.00 0.00 0.00 4.04
2503 2580 3.039011 ACCCCTGGTCATATGTACACTC 58.961 50.000 0.00 0.00 0.00 3.51
2508 2585 4.595781 GGTATGAACCCCTGGTCATATGTA 59.404 45.833 1.90 0.00 40.21 2.29
2510 2587 3.557054 CGGTATGAACCCCTGGTCATATG 60.557 52.174 8.28 0.00 43.54 1.78
2512 2589 2.043992 CGGTATGAACCCCTGGTCATA 58.956 52.381 2.33 2.33 43.54 2.15
2546 2658 2.572290 ACTTCCCAAGTGAAAACCGAG 58.428 47.619 0.00 0.00 41.01 4.63
2565 2677 5.547276 TCCTCCTGGGTCTACTCTAGTATAC 59.453 48.000 0.00 0.00 36.25 1.47
2584 2696 0.176680 ATCACATGCGTCTGTCCTCC 59.823 55.000 0.00 0.00 0.00 4.30
2649 2776 3.239587 TCGTGTCACTCAACTGTTTGA 57.760 42.857 0.65 0.00 39.55 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.