>input_sequence_71817
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------ATGGCAGAGGAGAAGAAGAAGCACAAGCACAGCAAGCACAAGGAGAAGGACAAGGAGAAGAAGGACAAGGCCGG
CGGCGCGGCGGCGGCGACGGCGGAGGCGAGCTTCAAGCCGTGCGGCGACGTGAAGGGCATCCGCTTCGGCGGGCAGTTCA
TCGTCAAGTCGTTCACGGTGCGGCGGGCGTCGCCGCTGGAGCTGCTCCGGCTGCTGGACATCCCGCCGTCGTTCCTGAGC
GAGCTGCAGAGCCTGCCGTTCCCGTCCACCACCGCCTACATGCCCACCAGCTTCACCATCCTGGCGCACCAGGCGTGGCA
CACGCTCACGCTCGGCCTCGGCACCAAGAAGTCCAAGGTGGTGCTCTTCGTGTTCGAGTCGGAGGCCATGAAGGCGGCCG
TGGACCAGCTGTGGCCGGCCATGATCCCGCTCGGGGACGTGAACAAGAAGCTCATCCGCGGGCTCACCGGCAGCGAGATG
GCGCGCTTCAAGTTCAGGAAGGGGTGCCTCACCATCTACGTCTACGCCGTGCGCCGGCTGGGCGCCGCCGGCTTCGTGCG
CGCCGACGACCTCAGGAGGATACTGCAGGCCGTGGTGGAGCTCAAGGACTTCTTGGACCACACCGCCATGCTCGCCATGC
CCAGCCAGAGGAGCATCACCTTGCAGTCCCGGGGCACCGCGGCCCAATGA------------------------------
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>chr1D_1_TraesCS1D01G283200
AATTCTTCCATGGATTCGCCTTTAATCTTACCATACTTCTAAGTCTAGGAAGTGCCATCTGTGGCTGATAGCCTTTTGTT
TGTCAAGATCCTCACCTGATCAGTCTCCGACAGGTCACATAGCTTCAAGGGCATTCGCTTTCGCAGTTGCCGTGACTGGA
AAAGAACAAAGGAAGTTTGAACCTGATCTTCTGAGGATTGTTGCTGCTTCTCCGTGAGGGATCATTGGTTTCCTTCAGGA
TCAACTGCTGGC----------GGGTACGTAACATGTTTTCGAGGGAGTATAATGGTGATCGAATTCTGTCGTTGGCGGC
TCTAGATTGATCTTCTTCTTTAATTACCCATGC---TTTTATATTTCTCCAAGAAATCAATCAATCATCATGAACACCCA
GGACAAATTAAGAATAGTGTTAAAAGTGGAACCAGATTTAGAAATGCGCACCAACAGGGTCTCATTATTAGGTCTGAAAC
TACTCAGTGTTCTTTGGCAGAGCCTATGATCATGTGCCACCTTTCAAGGAGTATGATCTTTAGCTTCGTTGCTATGATGG
CTAACCGCACTAAAAAGCATCAGGGAGAGAAAGCATACACTAATTAC---TACTAATACACATGGGCCAAAGTAAGCAGA
GACACA--CGCGTGCCCGCACTTAGACAATCGC-GATAACTTGGTTTATAAAACTGAAAAAA--TCGTTTTATATGACGA
GGCGGGGGCATCGGCAACCGACAGCGCCTCCGTGTTCTCTGCCCAACCGAAGAGATTACAAAAATACTAAG--TACGATA
ATAAAGCTACTAATTAAGCTTGTCCTGAATAATGTCCAAGTGGTGAAGTGGATGGTCCTTCACTCTGACTAGAAACTTTG
CGGTATGGTCGTACCAGCAGCCGCTGCAGGAGGAGGCACAGCGAAGGGAAGGGAGGTGGCGGTGGGGCTCCTCATTACGG
CCTTTTCCCTAGCAGCACAGCCCACTCCAGCAGGGG-------------------AAAGCAAAGGAGCGGCACGCCG---
-TCGCCATGGCAGAGGAGAAGAAGAAGCACAAGCACAGCAAGCACAAGGAGAAGGACAAGGAGAAGAAGGACAAGGCCGG
CGGCGCGGCGGCGGCGACGGCGGAGGCGAGCTTCAAGCCGTGCGGCGACGTGAAGGGCATCCGCTTCGGCGGGCAGTTCA
TCGTCAAGTCGTTCACGGTGCGGCGGGCGTCGCCGCTGGAGCTGCTCCGGCTGCTGGACATCCCGCCGTCGTTCCTGAGC
GAGCTGCAGAGCCTGCCGTTCCCGTCCACCACCGCCTACATGCCCACCAGCTTCACCATCCTGGCGCACCAGGCGTGGCA
CACGCTCACGCTCGGCCTCGGCACCAAGAAGTCCAAGGTGGTGCTCTTCGTGTTCGAGTCGGAGGCCATGAAGGCGGCCG
TGGACCAGCTGTGGCCGGCCATGATCCCGCTCGGGGACGTGAACAAGAAGCTCATCCGCGGGCTCACCGGCAGCGAGATG
GCGCGCTTCAAGTTCAGGAAGGGGTGCCTCACCATCTACGTCTACGCCGTGCGCCGGCTGGGCGCCGCCGGCTTCGTGCG
CGCCGACGACCTCAGGAGGATACTGCAGGCCGTGGTGGAGCTCAAGGACTTCTTGGACCACACCGCCATGCTCGCCATGC
CCAGCCAGAGGAGCATCACCTTGCAGTCCCGGGGCACCGCGGCCCAATGATCCTGCTCCCGGTCGACAGCCTCTTGCCCG
ATCCATTTCTGCAGCGCAGGTACTGTTATTATTGGCTCGCAATTCGCAAAGAGATGTCTGATTCTTTTGGGTTGGATTAG
TTTGTTCGTTCACTGTCGGTGTTCCCCTCCCCTGCCGGGAGCTGTATAGATCTATATATGTCGAGCAAAATCTTTGAAAC
AGATTAAGCATAGGGATTTTCCCAAAGGAAAGGATCTTACTCCACTTTTAGTATACTCCTGCCTCTGAAATTTTCCTTCA
TCAATGAAGAAGCCATGTGCGTT---------CTATGAGAGGCATTTTCATGTAGCATTGTACAGCACTTGCTG-TGCCA
CAGCTCTTTTTGTACAGGTTCTGGAAATTGCTGTGCACACGGTCCTTTGTGTTCCTCCATGCACTCATTATTTCACAAAT
CTAGAATGAATCTTTTGTAAGTATGAGATTGTAAACCACATGCTGGTGTTTTTT---ACTTCTTCTGGAAAAACTCTGTT
GTTATGGTCTTATGGAAAAACTCTGTTGTTATGGTCTTATGGAGACTGGAGTTTATCCACAAGTCAAGATTCGAGAGAGG
AAAGTGAAGGGTGCAGAATCAGAGAGGAAGTGGGTGCTGCTTAT---CTGCTTACGTGGGAGGCAACCATCTCGTGTAGT
ATTGGTAGGTAG----TGAGGATGAATATATGCTCTGTTTTTCACCTGTGACGTGAAGGAGC----TCTGCTTCGTGCCC
ATATGTGGTGCTGGCCGAGGCAGATCCACAGAGGTAGAGCTGCTTG---GACTTGGAATAGTGACG---TATTCTGCACG
AATGCATGCAAAAATAATCGAGTGTACATA-------------------TGACCAGGGG-------TTCATACCGTGGAT
GTGTAC---------TACTCGGTTTTCACTTGGGAAGTATACTAGAGTAGACCCAGGAGGACAGACGCATGTG-------
-------ATGGTCGTGTTGTAGCAGTTA-AAGTTTGTTGGGCATCCAGGACACTCTC-AAACAGTTGAGTGACACGATCG
GTATTTAAGTG
>chr1B_1
AATTCTTCCATGGATTCGTCTTTAATCTTACCATACTTCTAAGTGTAGGAAGTGCCATCTGTGGCCGATAGCCTTTTGTT
TGTCAAGATCCTCACCTCATCAGTTTCCGACAGGTCACAC--CTTCAAGGGCATTCGCTTTCGCAGTTGCCGTGACTGGA
AAAGAACAAAGGAAGTTTGAACCTGATCTTCTGAGGATTGTTGCTGCTTCTCCGCGAGGGAACATTGATTTCCTTCAGGA
T----------C----------GGGTACGTAACATGTTTTCGAGGGAGTATAATTGCGATCGAATTCTGTCGTTGGCTGC
TCTAGATTGATCTTCTTCTTTCATTACTCACATACTTTTTATATTGCTCCAAGAAATTAATCAATCATCATGAACACCCA
GGACAAATTAAGAATAGTGTTAAAAGTGGAACCAGATTTAGAAATGCGCACCAGCAGGGCCTCATTATTAAGTCTGAAAC
TACTCGGTGTTCTTTGGCAGAGCCTATGATCATGCGCCACCTTTTAGGGAGTATGATCTTTAGCTTCGTTGCTATGATGG
CTGGCCGCACTAAAAAGCATCAGGGAGGGAAAGCACACACTAATTATTATTACTAATACAAATGGGCCAAAGTAAGCAGA
GACACA--CGCGTGCGCGTGTTTAAACAATCAATGATAACTTCGTTTATAAAACTGAAAAAAAATCGTTTTATATGACGA
GGCGGGGGCATCGGCAACCGACAGCGCCTCCGTGTTCTCTGCCCAACCGAAGAGATTACAAAAATACCAAGTATACGATA
ATAAAGCTA---ATTAAGCTCGTCCTGAATAATGTCCAAGTGGTGAAGTGGATGGTCCTTCGCTCTGACTAGAAACTTTG
CGGTATGGTCGTACCAGCAGCCGCTGCAGGAGGAGGCACAGCGAAGGGAAGGGAGGTGGCGGTGGGGCTCCTCATTACGG
CCTTTTCCCTAGCAGCACAGCCCACTCCAGCAGGGG-------------------AAAGCAAAGGAGCGGCACGCCA---
-TCGCCATGGCAGAGGAGAAGAAGAAGCACAAGCACATCAAGC------------ACAAGGAGAAGAAGGACAAGGTCGG
CGGCGCCGCGGCGGC---GGCGGAGGCGAGCTTCAAGCCGTGCGGCGACGTGAAGGGCATCCGCTTCGGCGGGCAGTTCA
TCGTCAAGTCGTTCACGGTGCGTCGCGCGTCGCCGCTGGAGCTGCTCCGGCTGCTGGACATCCCGCCGTCGTTCCTGAGC
GAGCTGCAGAGCCTGCCGTTCCCGTCCACCACCGCCTACATGCCCACCAGCTTCACCATCCTGGCGCACCAGGCGTGGCA
CACGCTCACGCTCGGCCTGGGCACCAAGAAGTCCAAGGTGGTGCTCTTCGTGTTCGAGTCGGAGGCCATGAAGGCGGCCG
TGGACCAGCTGTGGCCGGCCATGATCCCGCTCGGGGACGTGAACAAGAAGCTCATCCGCGGCCTCACCGGCAGCGAGATG
GCGCGCTTCAAGTTCAGGAAGGGGTGCCTCACCATCTACGTCTACGCCGTGCGCCGGCTGGGTGCCGCCGGCTTCGTGCG
CGCCGACGACCTCCGGAGGATACTGCAGGCCGTGGTGGAGCTCAAGGACTTCTTGGACCACACCGCCATGCTCGCCATGC
CCAGCCAGAGGAGCATCACCTTGCAGTCCCGGGGCACCGTGGCCCAATGATCCTCCCTCCGATCGATGGCCTCTTGCTCG
ATCCATTTCTGCAGTGCAGGTACTGTTATTATTGGCTCGCAATTCGCAAAGAAATGTCTGATTCTTTTGGGTTGGATTAG
TTTGTTCGTTCACTGTCGGTGTTCCCCTCCCCTGCCGGGAGCTGTATAGATCTATATATGTCGAGCAAAATCTTTGAAAC
AGATTAAGCATAGAGATTTTCCCAAAGGAAAGGATCTTACTCCACTTTTAGTATACTCCTGCCTCTGAAATTATCCTTCA
TCAATGAAGAAGCCATCTGTTCTGTTCAT------TGAGAGGCATTTTCATGTAGCATTGTACAGCACGTGC---TGCCA
CAGCTCTTTTTGTACAGTTTCTGGAAATTGCTGTGCACACGGTCCTTTGTGTTCCTCCATGCACTCATTGTTTCACAAAT
CTAGAATGAATTTTTT----GTATGAGATTGTAAACCACATGCTGGTGTTTTTTTTAACTTCTTCTGGAAAAACTCTGTT
GTTAT----------------------------------TGGAGATTGGAGTTTATCCAGAAGTCCAGATTCGAGAGAGG
AAAGTGAAGGGTGCAGAATCAGAGAGAAAGTGGGTGCTGCTTATCTGCTGCTTACGTGGCAGGCAACCATCTCGTGTAGT
ATTGGTGGGTAGGTAGTGAGGATGAATATATGCTCTGTTTTTCACCTGTGACGTGAGGGAGCGAACTCTGCTTCGTGCCC
ATATGTGGCGCTGGCCGAGGCAGATCCACAGAGGTAGTCCTGCTTG---GAC-TGGAATAGTACATACTAAGACC-----
--------------------------------AATGGCACTGCGAGTCTTGACCAGGAGTTCATGCTTCACACCGTGGAT
GGGTAC---------TCGGTTTCACACTTTGAGAAAATATACTAGACCAGACCCATGAGGACAGAGGACAGATGCATGTG
CGTCATCATGGTCGTGTTGTAGCAGTTAAAAGTTTGTTGGGCATCCAGGACACTCCCGAAACAGTTGAGTGACACGATCG
GTATTTAAGTG
>chr1A_1
AATTCTTCCATGGATTCGCCTTTAATCTTACCATACTTCTAAGTGTAGGAAGTGCCATCTGTGGCCGATAGCCTTTTGTT
TGTCAAGATCCTCACCTGATCAGTCTCCGACAGGTCACATTGCTTCAAGGGCATTCGCTTTCGCAGTTGCCGTGACTGGA
AAAGAACAAAGGAAGTTCGAACCTGATCTTCTGAGGATTGTTGCTGCTTCTCCGCGAGGGATCATTGGTTTCCTTCAGGA
T----------CAACTGCTGGCGGGTACGTAGCATGTTTTCGAGGGAGTATAATTGTGATCGAATTCTTTGGTTGGCGGC
TCTAGATTGATCTTCTTCTTTAATTACCCATGC---TTTTATATTTCTCCAAGAAATCAATCAATCATCATGAACACCCA
GGACAAATTAAGAATAGTGTTAAAAGTGGAACCAGATTTAGAAATGCGCACCAACAGGGTCTCATTATTAGGTCTGAAAC
TACTCGGTGCTCTTTGGCAGAGCCTATGATCATGTGCCACCTTTTAAGCAGTATGATCTTTAGCTTCGTTGCTATGATGG
CTGGCCGCACTAAAAAGCATCAGGGAGAGAAAGCATACACTA------ATTACTAATACAAATGGGCCAAAGTCAGTAGA
GACACAGACGCGTGCGCGTACTTAAACAATCGC-GATAACTTGGTTTATAAAACTGAAAAAC--TCGTTTTGTATGACGA
GGCGGGGGCATCGGCAACCGACAGCGCCTCCGTGTTCTCTGCCCAACCGAAGAGATTACAAAAATACTAAG--TACGATA
ATAAAGCTACTAATCAAGCTTGTCCTGAATAATGTCCAAGTGGTGAAGTGGATGGTCCTTCACTCTGACTAGAAACTTTG
CGGTATGGTCGTACCAGCAGCCGCTGCAGGAGGAGGCACAGCGAAGGGAAGGGAGGTGGCGGTGGGGCTCCTCATTACGG
CCTTTTCCCCAGCAGCACAGCTCACTCCAGCAGCGGCAGCGACTGCAGGGAAAGCAAAGCAAAGGAGCGGCACGCCAGCC
ATCGCCATGGCAGAGGAGAAGAAGAAGCACAAGCACAGCAAGCACAAGGAGAAGGACAAGGAGAAGAAGGACAAGGCCGG
CGGCGCGGCGGCGGC---GGCGGAGGCGAGCTTCAAGCCGTGCGGCGACGTGAAGGGCATCCGCTTCGGCGGGCAGTTCA
TCGTCAAGTCGTTCACGGTGCGTCGCGCGTCGCCGCTGGAGCTGCTCCGGCTGCTGGACATCCCGCCGTCGTTCCTGAGC
GAGCTGCAGAGCCTGCCGTTCCCGTCCACCACCGCCTACATGCCCACCAGCTTCACCATCCTGGCGCACCAGGCGTGGCA
CACGCTCACGCTCGGCCTCGGCACCAAGAAGTCCAAGGTGGTGCTCTTCGTGTTCGAGTCGGAGGCCATGAAGGCGGCCG
TGGACCAGCTGTGGCCGGCCATGATCCCGCTCGGGGACGTGAACAAGAAGCTCATCCGCGGCCTCTCCGGCAGCGAGATG
GCGCGCTTCAAGTTCAGGAAGGGGTGCCTCACCATCTACGTCTACGCCGTGCGCCGGCTGGGCGCCGCCGGCTTCGTGCG
CGCCGACGACCTCAGGAGGATACTGCAGGCCGTGGTGGAGCTCAAGGACTTCCTGGACCACACCGCCATGCTCGCCATGC
CCAGTCAGAGGAGCATCACCTTGCAGTCCCGGGGCACCGTGGCCCAATGATCCTGCTCCCGATCGATGGCCTCTTGCTCG
ATCCATTCCTGCAGCGCAGGTACTGTTATTACTGGCTCGCAATTCGCAAAGAGATGTCTGATTCTTTTGGGTTGGATTAG
TTTGTTTTTTCACTGTCGGTGTTCCCCTCCCCTGCCGGGAGCTGTATAGATC--TATATGTCGAGCAAAATCTT------
-----AAGCATAGAAATTTTCCCAAAGGAAATGATCTTACTCCACTTTTAGTATACTCCTGCCTCTGAAATTATCCTTCA
TCAATGAAGAAGCCATGTGCTCTGTTCTATGACTATGAGAGGCATTTTCATGTAGCATTGTACTACAGCAGTTGTTGCCA
CAGCTCTTTTTGTACAGATTTTGGAAATTGCTGTGCACACCGTCTGGTGTTTTTTTTTTC--------------------
------------------------------------------------TTTTTT---ACTTCTTCTGGAAAAACTCTGTT
GTTAT----------------------------------TGGAGATCGGAGTTTATCCAGAAGTCCAGATTCGAGAGAGG
AAAGTGAAGGGTGCAGAATCAGGGAGAAATTGGGTGCTGCTTGT---CTGCTTACGTGGGAGGCAACCATCTGTTGTAGT
ATTG----GTAGGTAGTGAGGGTGAATATATGCTCTGTTTTTCACCTGTGACGTGAAGGAGCGAACTCTGCTTCGTGCCC
ATATGTGGTGCTGGCCGAGGCAGATCCGCAGAGCTAGCCCTGCTCATGTGACTTGGAATAGTGACATTATATTCTGCGCG
AATGCATGCAAAAATAACCAAGTGGATACAAGAACGGTGCTACATGCTTTGACCAGGGG-------TTCATACCGTGGAT
GTGTACCGCTACCGCTAGTCGGTTTTCACTTGGGAAATATACTAGAGTAGACC---GAGGACAGACGCATGTG-------
-------ATGGTCGTGTTGTAGCAGTTA-AAGTCTGTTGGGCATCCAGGACACTCCCGGAACAGTTGAGTGACGCGATCG
GTATTTAAGTG
>SNPs
--------------------------------------------S--------------------S--------------
----------------------------------------S---------------------------------------
------------------------------------------------------S-------------------------
-SSSSSSSSSS-------------------------------------------S-------------------------
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-----S--------------------------------------S-----------------------------------
--SS------------------------------------------S-------------S-------------------
---------------S--S-----S-------------------------------------------------------
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---------------SSS--------------------------------------------------------------
----------------------S--S------------------------------------------------------
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-------------------------------------------------------------S------------------
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---------------------------------------S---------------------S----SS---------S--
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-------------S----------------------------------------------------------S-------
--------------------SS----------------------------------------------S-----------
-----------------S---------------------------------------------------S----------
-----------S----SSSS------------------------------------------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------------S-----S--------------
--------------------------S-----------------------------------------------------
------S-------------------------------------------------------------------------
-------------------------------------SS--------------------------S-----------S--
-----------------S-S----S-S-S---------------------------------------------------
-----------------S------------------S------------------S------------------------
-------------------------------------------------------S------------------------
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>forward_215
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-----------------------------------GATTGTTGCTGCTTCTCCGT-------------------------
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>reverse_1748
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-------------------------------------------------------------------AGCCTCTTGCCCG
ATCCATT-------------------------------------------------------------------------
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