Multiple sequence alignment - TraesCS1D01G282500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G282500 chr1D 100.000 3507 0 0 1 3507 379798841 379795335 0.000000e+00 6477
1 TraesCS1D01G282500 chr1B 94.040 1745 71 16 841 2569 509892831 509891104 0.000000e+00 2615
2 TraesCS1D01G282500 chr1B 93.487 952 37 9 2571 3506 509891044 509890102 0.000000e+00 1391
3 TraesCS1D01G282500 chr1B 90.125 800 32 18 1 794 509893596 509892838 0.000000e+00 996
4 TraesCS1D01G282500 chr1A 94.813 1581 61 12 693 2270 480833037 480831475 0.000000e+00 2446
5 TraesCS1D01G282500 chr1A 92.359 746 24 9 2751 3491 480830941 480830224 0.000000e+00 1031
6 TraesCS1D01G282500 chr1A 89.474 608 35 13 66 668 480833879 480833296 0.000000e+00 741
7 TraesCS1D01G282500 chr1A 95.270 296 13 1 2274 2569 480831414 480831120 5.300000e-128 468


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G282500 chr1D 379795335 379798841 3506 True 6477.000000 6477 100.000000 1 3507 1 chr1D.!!$R1 3506
1 TraesCS1D01G282500 chr1B 509890102 509893596 3494 True 1667.333333 2615 92.550667 1 3506 3 chr1B.!!$R1 3505
2 TraesCS1D01G282500 chr1A 480830224 480833879 3655 True 1171.500000 2446 92.979000 66 3491 4 chr1A.!!$R1 3425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 1081 0.036388 TTGACGATTGTCTCTGGGGC 60.036 55.0 14.27 0.00 45.70 5.80 F
1099 1347 0.963962 AGGCGTTCTTAAGACGGTGA 59.036 50.0 21.01 0.71 0.00 4.02 F
2033 2286 0.179234 GGCAGGGAGCTAAGGAGTTC 59.821 60.0 0.00 0.00 44.79 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2217 1.418264 TGAGGATTTTGTCGACCACCA 59.582 47.619 14.12 0.0 0.00 4.17 R
2041 2294 1.522580 GGACGAGCATTCAGAGGCC 60.523 63.158 0.00 0.0 31.67 5.19 R
3251 3636 1.216977 CCTACGGTTCCGTGCATCA 59.783 57.895 24.37 5.5 42.91 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 188 1.063183 CCATCCTCTGATTCCCCCTC 58.937 60.000 0.00 0.00 0.00 4.30
322 332 2.175715 GCTCACCCCTTCTAATCCCAAT 59.824 50.000 0.00 0.00 0.00 3.16
329 340 3.722101 CCCTTCTAATCCCAATACCCACT 59.278 47.826 0.00 0.00 0.00 4.00
485 496 4.767478 GGCCTTTAGGTCTCGAATAGTTT 58.233 43.478 0.00 0.00 36.72 2.66
493 504 6.585695 AGGTCTCGAATAGTTTAACACAGA 57.414 37.500 0.00 0.00 0.00 3.41
522 533 1.241315 GGTTGTGCCATGCGGTAGTT 61.241 55.000 0.00 0.00 37.17 2.24
523 534 1.444836 GTTGTGCCATGCGGTAGTTA 58.555 50.000 0.00 0.00 33.28 2.24
529 540 2.289756 TGCCATGCGGTAGTTACTTGAA 60.290 45.455 0.00 0.00 33.28 2.69
592 603 1.225704 GTTGATCTGGGAGGGGCAG 59.774 63.158 0.00 0.00 0.00 4.85
598 609 3.933048 CTGGGAGGGGCAGCACAAG 62.933 68.421 0.00 0.00 0.00 3.16
606 618 1.686587 GGGGCAGCACAAGTAACTTTT 59.313 47.619 0.00 0.00 0.00 2.27
607 619 2.888414 GGGGCAGCACAAGTAACTTTTA 59.112 45.455 0.00 0.00 0.00 1.52
671 683 1.007618 CTAAGTAGGGCCGCGCTAC 60.008 63.158 30.57 30.57 45.97 3.58
734 980 4.901868 TGGGTTATTTGTGAGACTGGTAC 58.098 43.478 0.00 0.00 0.00 3.34
735 981 4.595781 TGGGTTATTTGTGAGACTGGTACT 59.404 41.667 0.00 0.00 0.00 2.73
764 1011 9.701355 GTGTTTTACATTTTTGTTTTGATGAGG 57.299 29.630 0.00 0.00 0.00 3.86
799 1046 4.579340 AGAGTCTACTTGAGTGTTGTTCGA 59.421 41.667 0.00 0.00 0.00 3.71
802 1049 7.121463 AGAGTCTACTTGAGTGTTGTTCGATAT 59.879 37.037 0.00 0.00 0.00 1.63
815 1062 8.612619 GTGTTGTTCGATATACCTTCAATTCAT 58.387 33.333 0.00 0.00 0.00 2.57
830 1077 6.413018 TCAATTCATTGACGATTGTCTCTG 57.587 37.500 14.27 10.93 45.70 3.35
834 1081 0.036388 TTGACGATTGTCTCTGGGGC 60.036 55.000 14.27 0.00 45.70 5.80
836 1083 2.190578 CGATTGTCTCTGGGGCCC 59.809 66.667 18.17 18.17 0.00 5.80
881 1129 9.463443 CGAAGTCTGAAACCTTGATTTTAAAAT 57.537 29.630 13.24 13.24 0.00 1.82
918 1166 8.519492 TTAATTGCAAGAATTTAGACAAGTGC 57.481 30.769 4.94 0.00 0.00 4.40
971 1219 3.731867 GCTTGTGCCCATTAGTTTGATCG 60.732 47.826 0.00 0.00 0.00 3.69
1099 1347 0.963962 AGGCGTTCTTAAGACGGTGA 59.036 50.000 21.01 0.71 0.00 4.02
1196 1444 6.328672 ACATAGCCCTCTGATCTGAGTAAAAT 59.671 38.462 23.36 11.79 32.50 1.82
1259 1507 7.415206 GGTTGCTCATGGTTTAAGTTATGGTAG 60.415 40.741 0.00 0.00 0.00 3.18
1318 1567 2.729028 GGCTACTTTGCCCCTGAATA 57.271 50.000 0.00 0.00 46.82 1.75
1356 1605 7.692291 CACTTTTCTATGCAATACAGTAAACGG 59.308 37.037 0.00 0.00 0.00 4.44
1357 1606 7.604927 ACTTTTCTATGCAATACAGTAAACGGA 59.395 33.333 0.00 0.00 0.00 4.69
1398 1647 4.698575 TGTTGGGTTAAACATTTGCCTTC 58.301 39.130 0.00 0.00 35.16 3.46
1399 1648 3.651803 TGGGTTAAACATTTGCCTTCG 57.348 42.857 0.00 0.00 0.00 3.79
1403 1652 4.023021 GGGTTAAACATTTGCCTTCGTACA 60.023 41.667 0.00 0.00 0.00 2.90
1404 1653 4.913345 GGTTAAACATTTGCCTTCGTACAC 59.087 41.667 0.00 0.00 0.00 2.90
1405 1654 5.278120 GGTTAAACATTTGCCTTCGTACACT 60.278 40.000 0.00 0.00 0.00 3.55
1406 1655 4.911514 AAACATTTGCCTTCGTACACTT 57.088 36.364 0.00 0.00 0.00 3.16
1407 1656 4.911514 AACATTTGCCTTCGTACACTTT 57.088 36.364 0.00 0.00 0.00 2.66
1408 1657 4.911514 ACATTTGCCTTCGTACACTTTT 57.088 36.364 0.00 0.00 0.00 2.27
1413 1662 5.856126 TTGCCTTCGTACACTTTTCTATG 57.144 39.130 0.00 0.00 0.00 2.23
1582 1831 6.580791 GTGAACGTTTATAATTGCTTGCTCAA 59.419 34.615 0.46 0.00 0.00 3.02
1583 1832 7.114247 GTGAACGTTTATAATTGCTTGCTCAAA 59.886 33.333 0.46 0.00 0.00 2.69
1618 1867 7.748847 TCGAAAGTTTCTTTCTAATATGGCAC 58.251 34.615 13.56 0.00 0.00 5.01
1767 2017 2.673368 GACTGAAGTTGTAAGCATCCCG 59.327 50.000 0.00 0.00 0.00 5.14
1840 2090 7.287696 ACACTCATTTTTGAGGTGGAATTAGTT 59.712 33.333 7.80 0.00 40.08 2.24
1964 2217 5.702670 CGCATCAAGTACCCAATAATCAGAT 59.297 40.000 0.00 0.00 0.00 2.90
2033 2286 0.179234 GGCAGGGAGCTAAGGAGTTC 59.821 60.000 0.00 0.00 44.79 3.01
2249 2503 8.617809 AGTACCCAATAATTATGTTAAACAGCG 58.382 33.333 0.00 0.00 0.00 5.18
2311 2622 9.797642 TCATGTCTATTATCCATTTTGTAGCAT 57.202 29.630 0.00 0.00 0.00 3.79
2584 2954 7.534085 TGTAACCTAGAAAATAATCTGCACG 57.466 36.000 0.00 0.00 0.00 5.34
2599 2969 1.293963 GCACGAAGCATCAGACTGCA 61.294 55.000 0.00 0.00 44.77 4.41
2612 2982 4.898320 TCAGACTGCAAGAAGATTGCTTA 58.102 39.130 13.19 0.00 45.13 3.09
2638 3008 1.304713 CTGTGCTTTGGGGGATGCT 60.305 57.895 0.00 0.00 0.00 3.79
2639 3009 0.034186 CTGTGCTTTGGGGGATGCTA 60.034 55.000 0.00 0.00 0.00 3.49
2640 3010 0.323360 TGTGCTTTGGGGGATGCTAC 60.323 55.000 0.00 0.00 0.00 3.58
2646 3016 2.116125 GGGGGATGCTACATGGCC 59.884 66.667 0.00 0.00 0.00 5.36
2688 3058 8.331730 AGCCGTACTGAAAACACTAAATAATT 57.668 30.769 0.00 0.00 0.00 1.40
2707 3077 2.698855 TACAGCAATCTTCTCCTGGC 57.301 50.000 0.00 0.00 0.00 4.85
2721 3091 5.755409 TCTCCTGGCTTTTACACAAGATA 57.245 39.130 0.00 0.00 0.00 1.98
2732 3102 9.624697 GCTTTTACACAAGATATGAAATGTCAA 57.375 29.630 0.00 0.00 36.85 3.18
2742 3112 8.715191 AGATATGAAATGTCAACTCTTCTGAC 57.285 34.615 0.00 0.00 42.94 3.51
2777 3147 1.068402 TGCACAGCAATGACATTTCCG 60.068 47.619 0.00 0.00 34.76 4.30
2909 3291 7.268235 CAGCATGTACATTTACTTTACAACACG 59.732 37.037 5.37 0.00 29.78 4.49
2919 3301 5.996669 ACTTTACAACACGAAGGGTTAAG 57.003 39.130 0.00 0.00 0.00 1.85
2982 3366 1.134159 GGCAGCAGTCATCTTCCTCAT 60.134 52.381 0.00 0.00 0.00 2.90
2983 3367 2.103771 GGCAGCAGTCATCTTCCTCATA 59.896 50.000 0.00 0.00 0.00 2.15
2984 3368 3.129871 GCAGCAGTCATCTTCCTCATAC 58.870 50.000 0.00 0.00 0.00 2.39
2985 3369 3.181467 GCAGCAGTCATCTTCCTCATACT 60.181 47.826 0.00 0.00 0.00 2.12
3043 3427 3.467803 GTGGAAATACTTCTGGATCCGG 58.532 50.000 15.09 15.09 0.00 5.14
3104 3488 3.705043 AGTATCCGCTAACCTGTTACG 57.295 47.619 5.58 5.58 0.00 3.18
3129 3513 3.885297 CCGAAATGGCTCAGAAATGGTAT 59.115 43.478 0.00 0.00 0.00 2.73
3251 3636 7.769044 GGCGGTGTAGATGGTAAAATATCATAT 59.231 37.037 0.00 0.00 27.47 1.78
3458 3847 0.747644 CCCGCATCATGTAACTGGCA 60.748 55.000 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 9.593565 AGTATTCTCCTTCCAAAGAAAAAGAAT 57.406 29.630 12.90 12.90 41.53 2.40
70 71 8.996651 AGTATTCTCCTTCCAAAGAAAAAGAA 57.003 30.769 0.00 0.00 37.18 2.52
71 72 9.503399 GTAGTATTCTCCTTCCAAAGAAAAAGA 57.497 33.333 0.00 0.00 35.29 2.52
182 188 2.972589 ATCTGGATGGGACGAGGGGG 62.973 65.000 0.00 0.00 0.00 5.40
274 284 2.974698 GAAGATGGATGCGGGCGG 60.975 66.667 0.00 0.00 0.00 6.13
275 285 2.974698 GGAAGATGGATGCGGGCG 60.975 66.667 0.00 0.00 0.00 6.13
276 286 1.599240 GAGGAAGATGGATGCGGGC 60.599 63.158 0.00 0.00 0.00 6.13
277 287 1.072159 GGAGGAAGATGGATGCGGG 59.928 63.158 0.00 0.00 0.00 6.13
278 288 0.034616 GAGGAGGAAGATGGATGCGG 59.965 60.000 0.00 0.00 0.00 5.69
279 289 1.000731 GAGAGGAGGAAGATGGATGCG 59.999 57.143 0.00 0.00 0.00 4.73
280 290 1.347378 GGAGAGGAGGAAGATGGATGC 59.653 57.143 0.00 0.00 0.00 3.91
281 291 1.617850 CGGAGAGGAGGAAGATGGATG 59.382 57.143 0.00 0.00 0.00 3.51
322 332 0.535335 GCTGAACGGATGAGTGGGTA 59.465 55.000 0.00 0.00 0.00 3.69
329 340 0.904865 AGGACCTGCTGAACGGATGA 60.905 55.000 0.00 0.00 0.00 2.92
416 427 3.367703 GGTCCATGACAAAATCAGGCAAG 60.368 47.826 0.00 0.00 41.91 4.01
485 496 4.161565 ACAACCTGAACTGAGTCTGTGTTA 59.838 41.667 3.13 0.00 0.00 2.41
493 504 0.546122 TGGCACAACCTGAACTGAGT 59.454 50.000 0.00 0.00 40.22 3.41
522 533 4.216257 GGCAACTGCAATCTTCTTCAAGTA 59.784 41.667 3.76 0.00 44.36 2.24
523 534 3.005155 GGCAACTGCAATCTTCTTCAAGT 59.995 43.478 3.76 0.00 44.36 3.16
568 579 1.340405 CCCTCCCAGATCAACAACCTG 60.340 57.143 0.00 0.00 0.00 4.00
606 618 7.180587 TCCCGGTATGCATTTATGTAACCTATA 59.819 37.037 3.54 0.00 0.00 1.31
607 619 6.013206 TCCCGGTATGCATTTATGTAACCTAT 60.013 38.462 3.54 0.00 0.00 2.57
642 654 3.244249 GGCCCTACTTAGCATGTCCTTAG 60.244 52.174 0.00 0.00 0.00 2.18
675 687 9.743057 CTGAGTTACACAAAACAATTCCAATAA 57.257 29.630 0.00 0.00 0.00 1.40
764 1011 8.242739 ACTCAAGTAGACTCTATAACCGTTTTC 58.757 37.037 0.00 0.00 0.00 2.29
815 1062 0.036388 GCCCCAGAGACAATCGTCAA 60.036 55.000 0.00 0.00 45.23 3.18
830 1077 4.660938 AGTGCGACAAAGGGCCCC 62.661 66.667 21.43 0.30 0.00 5.80
834 1081 2.192861 TTGGCAGTGCGACAAAGGG 61.193 57.895 9.45 0.00 0.00 3.95
836 1083 1.008538 GGTTGGCAGTGCGACAAAG 60.009 57.895 18.33 0.00 0.00 2.77
881 1129 7.798596 TTCTTGCAATTAAATTTGAAGCCAA 57.201 28.000 0.00 0.00 0.00 4.52
900 1148 5.947228 TCCTGCACTTGTCTAAATTCTTG 57.053 39.130 0.00 0.00 0.00 3.02
918 1166 6.932356 AATGCATAACATAGTCAGTTCCTG 57.068 37.500 0.00 0.00 38.34 3.86
1004 1252 6.769822 AGATTCTGAAAGCAAGAAAGAACAGA 59.230 34.615 0.00 0.00 30.17 3.41
1099 1347 4.710375 AGCATCATCCTTTGCTTTTCTGAT 59.290 37.500 0.00 0.00 46.71 2.90
1134 1382 2.917933 TCAACCAATGGAAGGCTATCG 58.082 47.619 6.16 0.00 0.00 2.92
1219 1467 1.102978 GCAACCGCCCAGTCAAATAT 58.897 50.000 0.00 0.00 0.00 1.28
1226 1474 2.360350 CATGAGCAACCGCCCAGT 60.360 61.111 0.00 0.00 39.83 4.00
1313 1562 5.574891 AAAGTGCATTGCCGTAATATTCA 57.425 34.783 6.12 0.00 0.00 2.57
1318 1567 5.581605 CATAGAAAAGTGCATTGCCGTAAT 58.418 37.500 6.12 0.00 0.00 1.89
1356 1605 3.881688 ACATGGCAGATTAAGCAGTGATC 59.118 43.478 0.00 0.00 0.00 2.92
1357 1606 3.894759 ACATGGCAGATTAAGCAGTGAT 58.105 40.909 0.00 0.00 0.00 3.06
1398 1647 5.176774 TGAACTGCACATAGAAAAGTGTACG 59.823 40.000 0.00 0.00 38.02 3.67
1399 1648 6.539649 TGAACTGCACATAGAAAAGTGTAC 57.460 37.500 0.00 0.00 38.02 2.90
1403 1652 8.565896 TCATAATGAACTGCACATAGAAAAGT 57.434 30.769 0.00 0.00 0.00 2.66
1404 1653 9.499585 CTTCATAATGAACTGCACATAGAAAAG 57.500 33.333 0.00 0.00 32.21 2.27
1405 1654 8.461222 CCTTCATAATGAACTGCACATAGAAAA 58.539 33.333 0.00 0.00 32.21 2.29
1406 1655 7.067372 CCCTTCATAATGAACTGCACATAGAAA 59.933 37.037 0.00 0.00 32.21 2.52
1407 1656 6.543465 CCCTTCATAATGAACTGCACATAGAA 59.457 38.462 0.00 0.00 32.21 2.10
1408 1657 6.057533 CCCTTCATAATGAACTGCACATAGA 58.942 40.000 0.00 0.00 32.21 1.98
1413 1662 4.009675 TGTCCCTTCATAATGAACTGCAC 58.990 43.478 0.00 0.00 32.21 4.57
1582 1831 7.391833 AGAAAGAAACTTTCGAGGCTATCAATT 59.608 33.333 15.37 0.00 33.86 2.32
1583 1832 6.881602 AGAAAGAAACTTTCGAGGCTATCAAT 59.118 34.615 15.37 0.00 33.86 2.57
1618 1867 1.327460 CTTCAACATGCCGATACACCG 59.673 52.381 0.00 0.00 0.00 4.94
1964 2217 1.418264 TGAGGATTTTGTCGACCACCA 59.582 47.619 14.12 0.00 0.00 4.17
2033 2286 1.649664 CATTCAGAGGCCGAGTTCTG 58.350 55.000 12.46 12.46 41.67 3.02
2041 2294 1.522580 GGACGAGCATTCAGAGGCC 60.523 63.158 0.00 0.00 31.67 5.19
2145 2399 2.930950 ACACAGCAAAAGCTCCACTAA 58.069 42.857 0.00 0.00 0.00 2.24
2236 2490 3.404224 TGTCCCACGCTGTTTAACATA 57.596 42.857 0.00 0.00 0.00 2.29
2249 2503 6.547141 TCAAGAATTCCAATATGATGTCCCAC 59.453 38.462 0.65 0.00 0.00 4.61
2309 2620 9.912634 ATGTACTTTTTAACAATCACAAGGATG 57.087 29.630 0.00 0.00 36.02 3.51
2311 2622 9.126151 TCATGTACTTTTTAACAATCACAAGGA 57.874 29.630 0.00 0.00 0.00 3.36
2343 2655 8.710749 AAGCTCCCTATCAAAATTTATGCATA 57.289 30.769 1.16 1.16 0.00 3.14
2346 2658 8.850156 TCTTAAGCTCCCTATCAAAATTTATGC 58.150 33.333 0.00 0.00 0.00 3.14
2356 2668 4.680708 CGCTGTTTCTTAAGCTCCCTATCA 60.681 45.833 0.00 0.00 37.27 2.15
2584 2954 3.332919 TCTTCTTGCAGTCTGATGCTTC 58.667 45.455 3.32 0.00 46.63 3.86
2599 2969 6.094603 CACAGTAGCCAATAAGCAATCTTCTT 59.905 38.462 0.00 0.00 33.85 2.52
2612 2982 1.549203 CCCAAAGCACAGTAGCCAAT 58.451 50.000 0.00 0.00 34.23 3.16
2688 3058 2.191400 AGCCAGGAGAAGATTGCTGTA 58.809 47.619 0.00 0.00 35.03 2.74
2703 3073 8.246180 ACATTTCATATCTTGTGTAAAAGCCAG 58.754 33.333 0.00 0.00 0.00 4.85
2721 3091 4.692625 CGGTCAGAAGAGTTGACATTTCAT 59.307 41.667 7.57 0.00 45.23 2.57
2732 3102 4.608948 AAAATGACTCGGTCAGAAGAGT 57.391 40.909 9.02 9.02 46.04 3.24
2734 3104 5.926542 CAGTAAAAATGACTCGGTCAGAAGA 59.073 40.000 11.50 0.00 46.04 2.87
2742 3112 3.667960 GCTGTGCAGTAAAAATGACTCGG 60.668 47.826 0.00 0.00 0.00 4.63
2777 3147 7.923888 ACATCTGCAATTACATTATCAGACAC 58.076 34.615 0.00 0.00 35.41 3.67
2909 3291 6.139048 TGTACACAAAAAGCTTAACCCTTC 57.861 37.500 0.00 0.00 0.00 3.46
2982 3366 5.925506 TTGAGATGGTCGTATTTCCAGTA 57.074 39.130 0.00 0.00 37.14 2.74
2983 3367 4.819105 TTGAGATGGTCGTATTTCCAGT 57.181 40.909 0.00 0.00 37.14 4.00
2984 3368 5.445939 CGTTTTGAGATGGTCGTATTTCCAG 60.446 44.000 0.00 0.00 37.14 3.86
2985 3369 4.390603 CGTTTTGAGATGGTCGTATTTCCA 59.609 41.667 0.00 0.00 38.14 3.53
3043 3427 8.845413 ATGTAAGATATGAGAAAAGATGCCTC 57.155 34.615 0.00 0.00 0.00 4.70
3129 3513 4.919774 TCCTATTCAAGTGCCCAAAGTA 57.080 40.909 0.00 0.00 0.00 2.24
3251 3636 1.216977 CCTACGGTTCCGTGCATCA 59.783 57.895 24.37 5.50 42.91 3.07
3458 3847 2.831770 CTGTCAGGCCTGTGTGGT 59.168 61.111 31.58 0.00 38.35 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.