Multiple sequence alignment - TraesCS1D01G277900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G277900 chr1D 100.000 3521 0 0 1 3521 375206807 375203287 0.000000e+00 6503.0
1 TraesCS1D01G277900 chr1B 93.593 2622 115 19 604 3186 499594030 499591423 0.000000e+00 3862.0
2 TraesCS1D01G277900 chr1B 77.500 200 30 11 365 559 632703680 632703869 4.810000e-19 106.0
3 TraesCS1D01G277900 chr1A 90.221 2986 163 45 604 3521 474293854 474290930 0.000000e+00 3777.0
4 TraesCS1D01G277900 chr3A 74.820 1390 245 71 1201 2527 617532697 617534044 6.690000e-147 531.0
5 TraesCS1D01G277900 chr3D 74.831 1331 252 54 1251 2527 475122396 475123697 3.110000e-145 525.0
6 TraesCS1D01G277900 chr6D 86.014 286 22 6 1403 1675 352722588 352722308 1.240000e-74 291.0
7 TraesCS1D01G277900 chr6D 88.889 216 24 0 1065 1280 352722798 352722583 2.080000e-67 267.0
8 TraesCS1D01G277900 chr6D 81.731 104 7 1 1446 1537 62881175 62881278 3.770000e-10 76.8
9 TraesCS1D01G277900 chr3B 77.955 440 77 12 1201 1624 631661671 631662106 1.250000e-64 257.0
10 TraesCS1D01G277900 chr3B 81.910 199 28 7 405 599 204851217 204851411 1.010000e-35 161.0
11 TraesCS1D01G277900 chr6B 87.234 188 12 7 1403 1578 526337538 526337725 1.660000e-48 204.0
12 TraesCS1D01G277900 chr2D 81.600 250 26 12 365 599 108316016 108316260 4.640000e-44 189.0
13 TraesCS1D01G277900 chr7A 80.000 190 27 10 418 602 95259498 95259681 2.850000e-26 130.0
14 TraesCS1D01G277900 chr5B 73.521 355 48 28 237 559 697828946 697828606 3.740000e-15 93.5
15 TraesCS1D01G277900 chr5A 82.353 102 5 2 1446 1535 436905690 436905590 3.770000e-10 76.8
16 TraesCS1D01G277900 chr4B 92.683 41 1 2 179 219 389118742 389118780 1.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G277900 chr1D 375203287 375206807 3520 True 6503 6503 100.000 1 3521 1 chr1D.!!$R1 3520
1 TraesCS1D01G277900 chr1B 499591423 499594030 2607 True 3862 3862 93.593 604 3186 1 chr1B.!!$R1 2582
2 TraesCS1D01G277900 chr1A 474290930 474293854 2924 True 3777 3777 90.221 604 3521 1 chr1A.!!$R1 2917
3 TraesCS1D01G277900 chr3A 617532697 617534044 1347 False 531 531 74.820 1201 2527 1 chr3A.!!$F1 1326
4 TraesCS1D01G277900 chr3D 475122396 475123697 1301 False 525 525 74.831 1251 2527 1 chr3D.!!$F1 1276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.033504 GCGTTGAGAGTGGAGGTTGA 59.966 55.0 0.00 0.00 0.00 3.18 F
573 574 0.036732 TTTTCCTCGCAGGAGCACAT 59.963 50.0 5.26 0.00 46.73 3.21 F
2241 2356 0.511221 AACTGTTCGACGAATTGCGG 59.489 50.0 14.27 8.62 46.49 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2045 0.846427 TCCTTTCCCAGATGGCCTGT 60.846 55.000 3.32 0.0 41.33 4.00 R
2270 2386 3.060138 GCGATTAACAGACACGTTGACAA 60.060 43.478 0.00 0.0 0.00 3.18 R
3424 3603 0.031616 AAGAGGGCTAGGGGAGTCAG 60.032 60.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.459934 GAAAAATAAATGAGGCGCGGG 58.540 47.619 8.83 0.00 0.00 6.13
21 22 0.744281 AAAATAAATGAGGCGCGGGG 59.256 50.000 8.83 0.00 0.00 5.73
22 23 0.395173 AAATAAATGAGGCGCGGGGT 60.395 50.000 8.83 0.00 0.00 4.95
23 24 0.470766 AATAAATGAGGCGCGGGGTA 59.529 50.000 8.83 0.00 0.00 3.69
24 25 0.470766 ATAAATGAGGCGCGGGGTAA 59.529 50.000 8.83 0.00 0.00 2.85
25 26 0.179067 TAAATGAGGCGCGGGGTAAG 60.179 55.000 8.83 0.00 0.00 2.34
26 27 2.193087 AAATGAGGCGCGGGGTAAGT 62.193 55.000 8.83 0.00 0.00 2.24
27 28 2.588856 AATGAGGCGCGGGGTAAGTC 62.589 60.000 8.83 0.00 0.00 3.01
28 29 4.525949 GAGGCGCGGGGTAAGTCC 62.526 72.222 8.83 0.00 0.00 3.85
30 31 4.832608 GGCGCGGGGTAAGTCCAG 62.833 72.222 8.83 0.00 38.11 3.86
31 32 3.766691 GCGCGGGGTAAGTCCAGA 61.767 66.667 8.83 0.00 38.11 3.86
32 33 2.183555 CGCGGGGTAAGTCCAGAC 59.816 66.667 0.00 0.00 38.11 3.51
33 34 2.348888 CGCGGGGTAAGTCCAGACT 61.349 63.158 0.00 0.00 44.94 3.24
34 35 1.033746 CGCGGGGTAAGTCCAGACTA 61.034 60.000 0.00 0.00 41.58 2.59
35 36 1.411041 GCGGGGTAAGTCCAGACTAT 58.589 55.000 0.00 0.00 41.58 2.12
36 37 1.068741 GCGGGGTAAGTCCAGACTATG 59.931 57.143 0.00 0.00 41.58 2.23
37 38 2.385803 CGGGGTAAGTCCAGACTATGT 58.614 52.381 0.00 0.00 41.58 2.29
38 39 3.559069 CGGGGTAAGTCCAGACTATGTA 58.441 50.000 0.00 0.00 41.58 2.29
39 40 3.317430 CGGGGTAAGTCCAGACTATGTAC 59.683 52.174 0.00 0.61 41.58 2.90
40 41 4.544683 GGGGTAAGTCCAGACTATGTACT 58.455 47.826 0.00 0.00 41.58 2.73
41 42 5.688500 CGGGGTAAGTCCAGACTATGTACTA 60.689 48.000 0.00 0.00 41.58 1.82
42 43 6.313324 GGGGTAAGTCCAGACTATGTACTAT 58.687 44.000 0.00 0.00 41.58 2.12
43 44 6.208994 GGGGTAAGTCCAGACTATGTACTATG 59.791 46.154 0.00 0.00 41.58 2.23
44 45 7.002879 GGGTAAGTCCAGACTATGTACTATGA 58.997 42.308 0.00 0.00 41.58 2.15
45 46 7.670559 GGGTAAGTCCAGACTATGTACTATGAT 59.329 40.741 0.00 0.00 41.58 2.45
46 47 9.080097 GGTAAGTCCAGACTATGTACTATGATT 57.920 37.037 0.00 0.00 41.58 2.57
49 50 7.437748 AGTCCAGACTATGTACTATGATTTGC 58.562 38.462 0.00 0.00 40.43 3.68
50 51 7.069950 AGTCCAGACTATGTACTATGATTTGCA 59.930 37.037 0.00 0.00 40.43 4.08
51 52 7.710907 GTCCAGACTATGTACTATGATTTGCAA 59.289 37.037 0.00 0.00 0.00 4.08
52 53 8.264347 TCCAGACTATGTACTATGATTTGCAAA 58.736 33.333 15.44 15.44 0.00 3.68
53 54 8.892723 CCAGACTATGTACTATGATTTGCAAAA 58.107 33.333 17.19 0.11 0.00 2.44
72 73 9.486497 TTGCAAAAAGAAAATATATGCAGTTCA 57.514 25.926 0.00 0.00 42.49 3.18
73 74 9.486497 TGCAAAAAGAAAATATATGCAGTTCAA 57.514 25.926 0.00 0.00 37.40 2.69
87 88 5.708948 TGCAGTTCAATTTACATACTTGCC 58.291 37.500 0.00 0.00 0.00 4.52
88 89 5.476599 TGCAGTTCAATTTACATACTTGCCT 59.523 36.000 0.00 0.00 0.00 4.75
89 90 6.015519 TGCAGTTCAATTTACATACTTGCCTT 60.016 34.615 0.00 0.00 0.00 4.35
90 91 6.868339 GCAGTTCAATTTACATACTTGCCTTT 59.132 34.615 0.00 0.00 0.00 3.11
91 92 7.384932 GCAGTTCAATTTACATACTTGCCTTTT 59.615 33.333 0.00 0.00 0.00 2.27
92 93 8.915654 CAGTTCAATTTACATACTTGCCTTTTC 58.084 33.333 0.00 0.00 0.00 2.29
93 94 8.637986 AGTTCAATTTACATACTTGCCTTTTCA 58.362 29.630 0.00 0.00 0.00 2.69
94 95 9.423061 GTTCAATTTACATACTTGCCTTTTCAT 57.577 29.630 0.00 0.00 0.00 2.57
110 111 9.029243 TGCCTTTTCATATTGTTTATTTATGCG 57.971 29.630 0.00 0.00 0.00 4.73
111 112 9.030301 GCCTTTTCATATTGTTTATTTATGCGT 57.970 29.630 0.00 0.00 0.00 5.24
118 119 9.935682 CATATTGTTTATTTATGCGTTGAGAGT 57.064 29.630 0.00 0.00 0.00 3.24
119 120 9.935682 ATATTGTTTATTTATGCGTTGAGAGTG 57.064 29.630 0.00 0.00 0.00 3.51
120 121 6.176975 TGTTTATTTATGCGTTGAGAGTGG 57.823 37.500 0.00 0.00 0.00 4.00
121 122 5.935206 TGTTTATTTATGCGTTGAGAGTGGA 59.065 36.000 0.00 0.00 0.00 4.02
122 123 6.092122 TGTTTATTTATGCGTTGAGAGTGGAG 59.908 38.462 0.00 0.00 0.00 3.86
123 124 2.672961 TTATGCGTTGAGAGTGGAGG 57.327 50.000 0.00 0.00 0.00 4.30
124 125 1.557099 TATGCGTTGAGAGTGGAGGT 58.443 50.000 0.00 0.00 0.00 3.85
125 126 0.687354 ATGCGTTGAGAGTGGAGGTT 59.313 50.000 0.00 0.00 0.00 3.50
126 127 0.249868 TGCGTTGAGAGTGGAGGTTG 60.250 55.000 0.00 0.00 0.00 3.77
127 128 0.033504 GCGTTGAGAGTGGAGGTTGA 59.966 55.000 0.00 0.00 0.00 3.18
128 129 1.540363 GCGTTGAGAGTGGAGGTTGAA 60.540 52.381 0.00 0.00 0.00 2.69
129 130 2.135933 CGTTGAGAGTGGAGGTTGAAC 58.864 52.381 0.00 0.00 0.00 3.18
130 131 2.483013 CGTTGAGAGTGGAGGTTGAACA 60.483 50.000 0.00 0.00 0.00 3.18
131 132 3.744660 GTTGAGAGTGGAGGTTGAACAT 58.255 45.455 0.00 0.00 0.00 2.71
132 133 3.685139 TGAGAGTGGAGGTTGAACATC 57.315 47.619 0.66 0.66 0.00 3.06
133 134 2.972021 TGAGAGTGGAGGTTGAACATCA 59.028 45.455 12.26 0.00 29.10 3.07
134 135 3.244215 TGAGAGTGGAGGTTGAACATCAC 60.244 47.826 12.26 9.11 29.10 3.06
135 136 2.975489 AGAGTGGAGGTTGAACATCACT 59.025 45.455 12.26 13.32 29.10 3.41
136 137 3.007398 AGAGTGGAGGTTGAACATCACTC 59.993 47.826 24.04 24.04 37.34 3.51
137 138 2.975489 AGTGGAGGTTGAACATCACTCT 59.025 45.455 12.26 5.08 29.10 3.24
138 139 4.160329 AGTGGAGGTTGAACATCACTCTA 58.840 43.478 12.26 0.00 29.10 2.43
139 140 4.593206 AGTGGAGGTTGAACATCACTCTAA 59.407 41.667 12.26 0.00 29.10 2.10
140 141 5.249393 AGTGGAGGTTGAACATCACTCTAAT 59.751 40.000 12.26 0.00 29.10 1.73
141 142 6.440647 AGTGGAGGTTGAACATCACTCTAATA 59.559 38.462 12.26 0.00 29.10 0.98
142 143 7.126421 AGTGGAGGTTGAACATCACTCTAATAT 59.874 37.037 12.26 0.00 29.10 1.28
143 144 7.770897 GTGGAGGTTGAACATCACTCTAATATT 59.229 37.037 12.26 0.00 29.10 1.28
144 145 7.987458 TGGAGGTTGAACATCACTCTAATATTC 59.013 37.037 12.26 0.00 29.10 1.75
145 146 7.442666 GGAGGTTGAACATCACTCTAATATTCC 59.557 40.741 12.26 0.00 29.10 3.01
146 147 7.283329 AGGTTGAACATCACTCTAATATTCCC 58.717 38.462 0.00 0.00 0.00 3.97
147 148 7.127955 AGGTTGAACATCACTCTAATATTCCCT 59.872 37.037 0.00 0.00 0.00 4.20
148 149 7.442666 GGTTGAACATCACTCTAATATTCCCTC 59.557 40.741 0.00 0.00 0.00 4.30
149 150 7.921041 TGAACATCACTCTAATATTCCCTCT 57.079 36.000 0.00 0.00 0.00 3.69
150 151 7.730084 TGAACATCACTCTAATATTCCCTCTG 58.270 38.462 0.00 0.00 0.00 3.35
151 152 7.345653 TGAACATCACTCTAATATTCCCTCTGT 59.654 37.037 0.00 0.00 0.00 3.41
152 153 7.682787 ACATCACTCTAATATTCCCTCTGTT 57.317 36.000 0.00 0.00 0.00 3.16
153 154 7.731054 ACATCACTCTAATATTCCCTCTGTTC 58.269 38.462 0.00 0.00 0.00 3.18
154 155 7.345653 ACATCACTCTAATATTCCCTCTGTTCA 59.654 37.037 0.00 0.00 0.00 3.18
155 156 7.921041 TCACTCTAATATTCCCTCTGTTCAT 57.079 36.000 0.00 0.00 0.00 2.57
156 157 8.324191 TCACTCTAATATTCCCTCTGTTCATT 57.676 34.615 0.00 0.00 0.00 2.57
157 158 8.772250 TCACTCTAATATTCCCTCTGTTCATTT 58.228 33.333 0.00 0.00 0.00 2.32
158 159 9.401058 CACTCTAATATTCCCTCTGTTCATTTT 57.599 33.333 0.00 0.00 0.00 1.82
159 160 9.981460 ACTCTAATATTCCCTCTGTTCATTTTT 57.019 29.630 0.00 0.00 0.00 1.94
167 168 7.938140 TCCCTCTGTTCATTTTTATAAGGTG 57.062 36.000 0.00 0.00 0.00 4.00
168 169 6.377146 TCCCTCTGTTCATTTTTATAAGGTGC 59.623 38.462 0.00 0.00 0.00 5.01
169 170 6.378280 CCCTCTGTTCATTTTTATAAGGTGCT 59.622 38.462 0.00 0.00 0.00 4.40
170 171 7.415653 CCCTCTGTTCATTTTTATAAGGTGCTC 60.416 40.741 0.00 0.00 0.00 4.26
171 172 7.337942 CCTCTGTTCATTTTTATAAGGTGCTCT 59.662 37.037 0.00 0.00 0.00 4.09
172 173 9.383519 CTCTGTTCATTTTTATAAGGTGCTCTA 57.616 33.333 0.00 0.00 0.00 2.43
173 174 9.383519 TCTGTTCATTTTTATAAGGTGCTCTAG 57.616 33.333 0.00 0.00 0.00 2.43
174 175 9.383519 CTGTTCATTTTTATAAGGTGCTCTAGA 57.616 33.333 0.00 0.00 0.00 2.43
175 176 9.162764 TGTTCATTTTTATAAGGTGCTCTAGAC 57.837 33.333 0.00 0.00 0.00 2.59
176 177 9.162764 GTTCATTTTTATAAGGTGCTCTAGACA 57.837 33.333 0.00 0.00 0.00 3.41
177 178 9.905713 TTCATTTTTATAAGGTGCTCTAGACAT 57.094 29.630 0.00 0.00 0.00 3.06
178 179 9.905713 TCATTTTTATAAGGTGCTCTAGACATT 57.094 29.630 0.00 0.00 0.00 2.71
181 182 9.733556 TTTTTATAAGGTGCTCTAGACATTTCA 57.266 29.630 0.00 0.00 0.00 2.69
182 183 8.948631 TTTATAAGGTGCTCTAGACATTTCAG 57.051 34.615 0.00 0.00 0.00 3.02
183 184 6.798427 ATAAGGTGCTCTAGACATTTCAGA 57.202 37.500 0.00 0.00 0.00 3.27
184 185 4.464069 AGGTGCTCTAGACATTTCAGAC 57.536 45.455 0.00 0.00 0.00 3.51
185 186 3.834813 AGGTGCTCTAGACATTTCAGACA 59.165 43.478 0.00 0.00 0.00 3.41
186 187 4.081752 AGGTGCTCTAGACATTTCAGACAG 60.082 45.833 0.00 0.00 0.00 3.51
187 188 4.322349 GGTGCTCTAGACATTTCAGACAGT 60.322 45.833 0.00 0.00 0.00 3.55
188 189 4.862018 GTGCTCTAGACATTTCAGACAGTC 59.138 45.833 0.00 0.00 0.00 3.51
189 190 4.769488 TGCTCTAGACATTTCAGACAGTCT 59.231 41.667 0.00 0.00 43.25 3.24
190 191 5.244851 TGCTCTAGACATTTCAGACAGTCTT 59.755 40.000 0.00 0.00 41.27 3.01
191 192 6.434340 TGCTCTAGACATTTCAGACAGTCTTA 59.566 38.462 0.00 0.00 41.27 2.10
192 193 7.123397 TGCTCTAGACATTTCAGACAGTCTTAT 59.877 37.037 0.00 0.00 41.27 1.73
193 194 8.625651 GCTCTAGACATTTCAGACAGTCTTATA 58.374 37.037 0.00 0.00 41.27 0.98
200 201 9.778741 ACATTTCAGACAGTCTTATAAAAGTGA 57.221 29.630 0.00 0.00 34.13 3.41
204 205 8.777865 TCAGACAGTCTTATAAAAGTGAATGG 57.222 34.615 0.00 0.00 34.13 3.16
205 206 8.593679 TCAGACAGTCTTATAAAAGTGAATGGA 58.406 33.333 0.00 0.00 34.13 3.41
206 207 8.877779 CAGACAGTCTTATAAAAGTGAATGGAG 58.122 37.037 0.00 0.00 34.13 3.86
207 208 8.043710 AGACAGTCTTATAAAAGTGAATGGAGG 58.956 37.037 0.00 0.00 34.13 4.30
208 209 7.112779 ACAGTCTTATAAAAGTGAATGGAGGG 58.887 38.462 0.53 0.00 34.13 4.30
209 210 7.037586 ACAGTCTTATAAAAGTGAATGGAGGGA 60.038 37.037 0.53 0.00 34.13 4.20
210 211 7.497249 CAGTCTTATAAAAGTGAATGGAGGGAG 59.503 40.741 0.00 0.00 34.13 4.30
211 212 7.182930 AGTCTTATAAAAGTGAATGGAGGGAGT 59.817 37.037 0.00 0.00 34.13 3.85
212 213 8.483758 GTCTTATAAAAGTGAATGGAGGGAGTA 58.516 37.037 0.00 0.00 34.13 2.59
213 214 8.705594 TCTTATAAAAGTGAATGGAGGGAGTAG 58.294 37.037 0.00 0.00 34.13 2.57
214 215 6.893020 ATAAAAGTGAATGGAGGGAGTAGT 57.107 37.500 0.00 0.00 0.00 2.73
215 216 4.559862 AAAGTGAATGGAGGGAGTAGTG 57.440 45.455 0.00 0.00 0.00 2.74
216 217 3.191888 AGTGAATGGAGGGAGTAGTGT 57.808 47.619 0.00 0.00 0.00 3.55
217 218 3.521727 AGTGAATGGAGGGAGTAGTGTT 58.478 45.455 0.00 0.00 0.00 3.32
218 219 3.515901 AGTGAATGGAGGGAGTAGTGTTC 59.484 47.826 0.00 0.00 0.00 3.18
219 220 3.260884 GTGAATGGAGGGAGTAGTGTTCA 59.739 47.826 0.00 0.00 0.00 3.18
220 221 4.080863 GTGAATGGAGGGAGTAGTGTTCAT 60.081 45.833 0.00 0.00 0.00 2.57
221 222 4.162320 TGAATGGAGGGAGTAGTGTTCATC 59.838 45.833 0.00 0.00 0.00 2.92
222 223 3.184382 TGGAGGGAGTAGTGTTCATCA 57.816 47.619 0.00 0.00 0.00 3.07
223 224 3.516586 TGGAGGGAGTAGTGTTCATCAA 58.483 45.455 0.00 0.00 0.00 2.57
224 225 3.907474 TGGAGGGAGTAGTGTTCATCAAA 59.093 43.478 0.00 0.00 0.00 2.69
225 226 4.254492 GGAGGGAGTAGTGTTCATCAAAC 58.746 47.826 0.00 0.00 38.43 2.93
226 227 4.254492 GAGGGAGTAGTGTTCATCAAACC 58.746 47.826 0.00 0.00 37.03 3.27
227 228 3.910627 AGGGAGTAGTGTTCATCAAACCT 59.089 43.478 0.00 0.00 37.03 3.50
228 229 4.351111 AGGGAGTAGTGTTCATCAAACCTT 59.649 41.667 0.00 0.00 37.03 3.50
229 230 4.455877 GGGAGTAGTGTTCATCAAACCTTG 59.544 45.833 0.00 0.00 37.03 3.61
230 231 5.305585 GGAGTAGTGTTCATCAAACCTTGA 58.694 41.667 0.00 0.00 45.01 3.02
231 232 5.409826 GGAGTAGTGTTCATCAAACCTTGAG 59.590 44.000 0.00 0.00 43.98 3.02
232 233 6.174720 AGTAGTGTTCATCAAACCTTGAGA 57.825 37.500 0.00 0.00 43.98 3.27
233 234 6.226787 AGTAGTGTTCATCAAACCTTGAGAG 58.773 40.000 0.00 0.00 43.98 3.20
234 235 5.296151 AGTGTTCATCAAACCTTGAGAGA 57.704 39.130 0.00 0.00 43.98 3.10
235 236 5.874093 AGTGTTCATCAAACCTTGAGAGAT 58.126 37.500 0.00 0.00 43.98 2.75
236 237 6.302269 AGTGTTCATCAAACCTTGAGAGATT 58.698 36.000 0.00 0.00 43.98 2.40
237 238 6.206243 AGTGTTCATCAAACCTTGAGAGATTG 59.794 38.462 0.00 0.00 43.98 2.67
238 239 5.474532 TGTTCATCAAACCTTGAGAGATTGG 59.525 40.000 0.00 0.00 43.98 3.16
239 240 4.592942 TCATCAAACCTTGAGAGATTGGG 58.407 43.478 0.00 0.00 43.98 4.12
240 241 4.289410 TCATCAAACCTTGAGAGATTGGGA 59.711 41.667 0.00 0.00 43.98 4.37
241 242 4.292186 TCAAACCTTGAGAGATTGGGAG 57.708 45.455 0.00 0.00 34.08 4.30
242 243 3.009473 TCAAACCTTGAGAGATTGGGAGG 59.991 47.826 0.00 0.00 34.08 4.30
243 244 2.649742 ACCTTGAGAGATTGGGAGGA 57.350 50.000 0.00 0.00 0.00 3.71
244 245 3.142579 ACCTTGAGAGATTGGGAGGAT 57.857 47.619 0.00 0.00 0.00 3.24
245 246 3.044894 ACCTTGAGAGATTGGGAGGATC 58.955 50.000 0.00 0.00 0.00 3.36
246 247 3.044156 CCTTGAGAGATTGGGAGGATCA 58.956 50.000 0.00 0.00 36.25 2.92
247 248 3.651904 CCTTGAGAGATTGGGAGGATCAT 59.348 47.826 0.00 0.00 36.25 2.45
248 249 4.104420 CCTTGAGAGATTGGGAGGATCATT 59.896 45.833 0.00 0.00 36.25 2.57
249 250 5.398809 CCTTGAGAGATTGGGAGGATCATTT 60.399 44.000 0.00 0.00 36.25 2.32
250 251 5.722172 TGAGAGATTGGGAGGATCATTTT 57.278 39.130 0.00 0.00 36.25 1.82
251 252 5.443283 TGAGAGATTGGGAGGATCATTTTG 58.557 41.667 0.00 0.00 36.25 2.44
252 253 5.192321 TGAGAGATTGGGAGGATCATTTTGA 59.808 40.000 0.00 0.00 36.25 2.69
253 254 6.126273 TGAGAGATTGGGAGGATCATTTTGAT 60.126 38.462 0.00 0.00 40.34 2.57
254 255 6.680540 AGAGATTGGGAGGATCATTTTGATT 58.319 36.000 0.00 0.00 37.20 2.57
255 256 6.776603 AGAGATTGGGAGGATCATTTTGATTC 59.223 38.462 0.00 0.00 37.20 2.52
256 257 5.837438 AGATTGGGAGGATCATTTTGATTCC 59.163 40.000 0.00 1.25 37.20 3.01
257 258 3.914771 TGGGAGGATCATTTTGATTCCC 58.085 45.455 15.79 15.79 46.80 3.97
258 259 2.887152 GGGAGGATCATTTTGATTCCCG 59.113 50.000 10.16 0.00 41.51 5.14
259 260 3.435026 GGGAGGATCATTTTGATTCCCGA 60.435 47.826 10.16 0.00 41.51 5.14
260 261 3.817647 GGAGGATCATTTTGATTCCCGAG 59.182 47.826 0.00 0.00 37.20 4.63
261 262 4.444876 GGAGGATCATTTTGATTCCCGAGA 60.445 45.833 0.00 0.00 37.20 4.04
262 263 4.712476 AGGATCATTTTGATTCCCGAGAG 58.288 43.478 0.00 0.00 37.20 3.20
263 264 3.251972 GGATCATTTTGATTCCCGAGAGC 59.748 47.826 0.00 0.00 37.20 4.09
264 265 3.348647 TCATTTTGATTCCCGAGAGCA 57.651 42.857 0.00 0.00 0.00 4.26
265 266 3.889815 TCATTTTGATTCCCGAGAGCAT 58.110 40.909 0.00 0.00 0.00 3.79
266 267 4.272489 TCATTTTGATTCCCGAGAGCATT 58.728 39.130 0.00 0.00 0.00 3.56
267 268 4.706476 TCATTTTGATTCCCGAGAGCATTT 59.294 37.500 0.00 0.00 0.00 2.32
268 269 4.439305 TTTTGATTCCCGAGAGCATTTG 57.561 40.909 0.00 0.00 0.00 2.32
269 270 1.382522 TGATTCCCGAGAGCATTTGC 58.617 50.000 0.00 0.00 42.49 3.68
281 282 1.913317 GCATTTGCTCCCGAATGAAC 58.087 50.000 7.63 0.00 42.90 3.18
282 283 1.202114 GCATTTGCTCCCGAATGAACA 59.798 47.619 7.63 0.00 42.90 3.18
283 284 2.352617 GCATTTGCTCCCGAATGAACAA 60.353 45.455 7.63 0.00 42.90 2.83
284 285 3.676873 GCATTTGCTCCCGAATGAACAAT 60.677 43.478 7.63 0.00 42.90 2.71
285 286 4.439974 GCATTTGCTCCCGAATGAACAATA 60.440 41.667 7.63 0.00 42.90 1.90
286 287 4.695217 TTTGCTCCCGAATGAACAATAC 57.305 40.909 0.00 0.00 0.00 1.89
287 288 3.627395 TGCTCCCGAATGAACAATACT 57.373 42.857 0.00 0.00 0.00 2.12
288 289 3.270027 TGCTCCCGAATGAACAATACTG 58.730 45.455 0.00 0.00 0.00 2.74
289 290 2.032178 GCTCCCGAATGAACAATACTGC 59.968 50.000 0.00 0.00 0.00 4.40
290 291 3.270027 CTCCCGAATGAACAATACTGCA 58.730 45.455 0.00 0.00 0.00 4.41
291 292 3.680490 TCCCGAATGAACAATACTGCAA 58.320 40.909 0.00 0.00 0.00 4.08
292 293 4.075682 TCCCGAATGAACAATACTGCAAA 58.924 39.130 0.00 0.00 0.00 3.68
293 294 4.520874 TCCCGAATGAACAATACTGCAAAA 59.479 37.500 0.00 0.00 0.00 2.44
294 295 5.010112 TCCCGAATGAACAATACTGCAAAAA 59.990 36.000 0.00 0.00 0.00 1.94
356 357 6.767524 TTTTGTGGATGTTCTTGTTAGTGT 57.232 33.333 0.00 0.00 0.00 3.55
357 358 6.371809 TTTGTGGATGTTCTTGTTAGTGTC 57.628 37.500 0.00 0.00 0.00 3.67
358 359 4.055360 TGTGGATGTTCTTGTTAGTGTCG 58.945 43.478 0.00 0.00 0.00 4.35
359 360 3.064207 TGGATGTTCTTGTTAGTGTCGC 58.936 45.455 0.00 0.00 0.00 5.19
360 361 3.064207 GGATGTTCTTGTTAGTGTCGCA 58.936 45.455 0.00 0.00 0.00 5.10
361 362 3.496884 GGATGTTCTTGTTAGTGTCGCAA 59.503 43.478 0.00 0.00 0.00 4.85
362 363 4.377431 GGATGTTCTTGTTAGTGTCGCAAG 60.377 45.833 0.00 0.00 40.47 4.01
363 364 3.787785 TGTTCTTGTTAGTGTCGCAAGA 58.212 40.909 0.00 0.00 44.44 3.02
375 376 2.631418 TCGCAAGAGAAACGGAGTAG 57.369 50.000 0.00 0.00 41.92 2.57
376 377 1.884579 TCGCAAGAGAAACGGAGTAGT 59.115 47.619 0.00 0.00 41.92 2.73
377 378 1.986378 CGCAAGAGAAACGGAGTAGTG 59.014 52.381 0.00 0.00 40.17 2.74
378 379 2.338500 GCAAGAGAAACGGAGTAGTGG 58.662 52.381 0.00 0.00 45.00 4.00
379 380 2.288886 GCAAGAGAAACGGAGTAGTGGT 60.289 50.000 0.00 0.00 45.00 4.16
380 381 3.318017 CAAGAGAAACGGAGTAGTGGTG 58.682 50.000 0.00 0.00 45.00 4.17
381 382 2.595238 AGAGAAACGGAGTAGTGGTGT 58.405 47.619 0.00 0.00 45.00 4.16
382 383 2.963782 AGAGAAACGGAGTAGTGGTGTT 59.036 45.455 0.00 0.00 45.00 3.32
383 384 3.387050 AGAGAAACGGAGTAGTGGTGTTT 59.613 43.478 0.00 0.00 45.00 2.83
384 385 3.725490 AGAAACGGAGTAGTGGTGTTTC 58.275 45.455 7.79 7.79 45.00 2.78
385 386 2.144482 AACGGAGTAGTGGTGTTTCG 57.856 50.000 0.00 0.00 45.00 3.46
386 387 1.035139 ACGGAGTAGTGGTGTTTCGT 58.965 50.000 0.00 0.00 41.94 3.85
387 388 1.000938 ACGGAGTAGTGGTGTTTCGTC 60.001 52.381 0.00 0.00 41.94 4.20
388 389 1.694639 GGAGTAGTGGTGTTTCGTCG 58.305 55.000 0.00 0.00 0.00 5.12
389 390 1.000938 GGAGTAGTGGTGTTTCGTCGT 60.001 52.381 0.00 0.00 0.00 4.34
390 391 2.049228 GAGTAGTGGTGTTTCGTCGTG 58.951 52.381 0.00 0.00 0.00 4.35
391 392 1.677576 AGTAGTGGTGTTTCGTCGTGA 59.322 47.619 0.00 0.00 0.00 4.35
392 393 2.099592 AGTAGTGGTGTTTCGTCGTGAA 59.900 45.455 0.00 0.00 33.85 3.18
393 394 2.012937 AGTGGTGTTTCGTCGTGAAA 57.987 45.000 0.00 2.26 44.19 2.69
417 418 6.508030 AAAAATTGGGTGACATTTTAGGGT 57.492 33.333 0.00 0.00 32.98 4.34
418 419 7.619512 AAAAATTGGGTGACATTTTAGGGTA 57.380 32.000 0.00 0.00 32.98 3.69
419 420 7.619512 AAAATTGGGTGACATTTTAGGGTAA 57.380 32.000 0.00 0.00 32.98 2.85
420 421 7.806680 AAATTGGGTGACATTTTAGGGTAAT 57.193 32.000 0.00 0.00 32.53 1.89
421 422 8.903059 AAATTGGGTGACATTTTAGGGTAATA 57.097 30.769 0.00 0.00 32.53 0.98
422 423 9.500701 AAATTGGGTGACATTTTAGGGTAATAT 57.499 29.630 0.00 0.00 32.53 1.28
423 424 9.500701 AATTGGGTGACATTTTAGGGTAATATT 57.499 29.630 0.00 0.00 0.00 1.28
424 425 8.903059 TTGGGTGACATTTTAGGGTAATATTT 57.097 30.769 0.00 0.00 0.00 1.40
425 426 8.299990 TGGGTGACATTTTAGGGTAATATTTG 57.700 34.615 0.00 0.00 0.00 2.32
426 427 7.343316 TGGGTGACATTTTAGGGTAATATTTGG 59.657 37.037 0.00 0.00 0.00 3.28
427 428 7.343574 GGGTGACATTTTAGGGTAATATTTGGT 59.656 37.037 0.00 0.00 0.00 3.67
428 429 8.194769 GGTGACATTTTAGGGTAATATTTGGTG 58.805 37.037 0.00 0.00 0.00 4.17
429 430 8.745590 GTGACATTTTAGGGTAATATTTGGTGT 58.254 33.333 0.00 0.00 0.00 4.16
430 431 9.315363 TGACATTTTAGGGTAATATTTGGTGTT 57.685 29.630 0.00 0.00 0.00 3.32
431 432 9.797556 GACATTTTAGGGTAATATTTGGTGTTC 57.202 33.333 0.00 0.00 0.00 3.18
432 433 9.541884 ACATTTTAGGGTAATATTTGGTGTTCT 57.458 29.630 0.00 0.00 0.00 3.01
459 460 6.721571 TTTTTCACACGCCAAAATGTTTAA 57.278 29.167 0.00 0.00 0.00 1.52
460 461 5.704217 TTTCACACGCCAAAATGTTTAAC 57.296 34.783 0.00 0.00 0.00 2.01
461 462 3.707793 TCACACGCCAAAATGTTTAACC 58.292 40.909 0.00 0.00 0.00 2.85
462 463 2.797719 CACACGCCAAAATGTTTAACCC 59.202 45.455 0.00 0.00 0.00 4.11
463 464 2.696187 ACACGCCAAAATGTTTAACCCT 59.304 40.909 0.00 0.00 0.00 4.34
464 465 3.133183 ACACGCCAAAATGTTTAACCCTT 59.867 39.130 0.00 0.00 0.00 3.95
465 466 4.123506 CACGCCAAAATGTTTAACCCTTT 58.876 39.130 0.00 0.00 0.00 3.11
466 467 4.572795 CACGCCAAAATGTTTAACCCTTTT 59.427 37.500 0.00 0.00 0.00 2.27
467 468 4.812091 ACGCCAAAATGTTTAACCCTTTTC 59.188 37.500 0.00 0.00 0.00 2.29
468 469 5.053811 CGCCAAAATGTTTAACCCTTTTCT 58.946 37.500 0.00 0.00 0.00 2.52
469 470 5.176774 CGCCAAAATGTTTAACCCTTTTCTC 59.823 40.000 0.00 0.00 0.00 2.87
470 471 6.288294 GCCAAAATGTTTAACCCTTTTCTCT 58.712 36.000 0.00 0.00 0.00 3.10
471 472 7.438564 GCCAAAATGTTTAACCCTTTTCTCTA 58.561 34.615 0.00 0.00 0.00 2.43
472 473 7.929245 GCCAAAATGTTTAACCCTTTTCTCTAA 59.071 33.333 0.00 0.00 0.00 2.10
473 474 9.825109 CCAAAATGTTTAACCCTTTTCTCTAAA 57.175 29.630 0.00 0.00 0.00 1.85
479 480 9.863845 TGTTTAACCCTTTTCTCTAAAACTTTG 57.136 29.630 0.00 0.00 31.37 2.77
480 481 8.814235 GTTTAACCCTTTTCTCTAAAACTTTGC 58.186 33.333 0.00 0.00 31.37 3.68
481 482 6.538945 AACCCTTTTCTCTAAAACTTTGCA 57.461 33.333 0.00 0.00 31.37 4.08
482 483 6.149129 ACCCTTTTCTCTAAAACTTTGCAG 57.851 37.500 0.00 0.00 31.37 4.41
483 484 5.891551 ACCCTTTTCTCTAAAACTTTGCAGA 59.108 36.000 0.00 0.00 31.37 4.26
484 485 6.183360 ACCCTTTTCTCTAAAACTTTGCAGAC 60.183 38.462 0.00 0.00 31.37 3.51
485 486 6.183360 CCCTTTTCTCTAAAACTTTGCAGACA 60.183 38.462 0.00 0.00 31.37 3.41
486 487 7.257722 CCTTTTCTCTAAAACTTTGCAGACAA 58.742 34.615 0.00 0.00 31.37 3.18
487 488 7.220875 CCTTTTCTCTAAAACTTTGCAGACAAC 59.779 37.037 0.00 0.00 31.40 3.32
488 489 6.751514 TTCTCTAAAACTTTGCAGACAACA 57.248 33.333 0.00 0.00 34.87 3.33
489 490 6.942532 TCTCTAAAACTTTGCAGACAACAT 57.057 33.333 0.00 0.00 34.87 2.71
490 491 7.333528 TCTCTAAAACTTTGCAGACAACATT 57.666 32.000 0.00 0.00 34.87 2.71
491 492 7.771183 TCTCTAAAACTTTGCAGACAACATTT 58.229 30.769 0.00 0.00 34.87 2.32
492 493 7.701924 TCTCTAAAACTTTGCAGACAACATTTG 59.298 33.333 0.00 0.00 34.87 2.32
493 494 7.542890 TCTAAAACTTTGCAGACAACATTTGA 58.457 30.769 0.00 0.00 34.87 2.69
494 495 8.031864 TCTAAAACTTTGCAGACAACATTTGAA 58.968 29.630 0.00 0.00 34.87 2.69
495 496 6.407475 AAACTTTGCAGACAACATTTGAAC 57.593 33.333 0.00 0.00 34.87 3.18
496 497 4.104776 ACTTTGCAGACAACATTTGAACG 58.895 39.130 0.00 0.00 34.87 3.95
497 498 3.773860 TTGCAGACAACATTTGAACGT 57.226 38.095 0.00 0.00 0.00 3.99
498 499 4.884458 TTGCAGACAACATTTGAACGTA 57.116 36.364 0.00 0.00 0.00 3.57
499 500 4.884458 TGCAGACAACATTTGAACGTAA 57.116 36.364 0.00 0.00 0.00 3.18
500 501 4.593157 TGCAGACAACATTTGAACGTAAC 58.407 39.130 0.00 0.00 0.00 2.50
501 502 4.334203 TGCAGACAACATTTGAACGTAACT 59.666 37.500 0.00 0.00 0.00 2.24
502 503 5.163703 TGCAGACAACATTTGAACGTAACTT 60.164 36.000 0.00 0.00 0.00 2.66
503 504 6.037281 TGCAGACAACATTTGAACGTAACTTA 59.963 34.615 0.00 0.00 0.00 2.24
504 505 7.075741 GCAGACAACATTTGAACGTAACTTAT 58.924 34.615 0.00 0.00 0.00 1.73
505 506 8.225107 GCAGACAACATTTGAACGTAACTTATA 58.775 33.333 0.00 0.00 0.00 0.98
567 568 9.765795 TTTTAAAAATTATTTTTCCTCGCAGGA 57.234 25.926 17.50 1.25 44.10 3.86
568 569 8.980143 TTAAAAATTATTTTTCCTCGCAGGAG 57.020 30.769 17.50 0.00 46.73 3.69
569 570 4.639135 AATTATTTTTCCTCGCAGGAGC 57.361 40.909 5.26 0.00 46.73 4.70
570 571 2.779755 TATTTTTCCTCGCAGGAGCA 57.220 45.000 5.26 0.00 46.73 4.26
571 572 1.168714 ATTTTTCCTCGCAGGAGCAC 58.831 50.000 5.26 0.00 46.73 4.40
572 573 0.179032 TTTTTCCTCGCAGGAGCACA 60.179 50.000 5.26 0.00 46.73 4.57
573 574 0.036732 TTTTCCTCGCAGGAGCACAT 59.963 50.000 5.26 0.00 46.73 3.21
574 575 0.674581 TTTCCTCGCAGGAGCACATG 60.675 55.000 5.26 0.00 46.73 3.21
592 593 2.124151 CTCCCGGGAGCCCAATTG 60.124 66.667 36.90 12.91 35.31 2.32
593 594 2.612430 TCCCGGGAGCCCAATTGA 60.612 61.111 22.63 0.00 35.37 2.57
594 595 2.210144 CTCCCGGGAGCCCAATTGAA 62.210 60.000 36.90 3.41 35.31 2.69
595 596 1.076044 CCCGGGAGCCCAATTGAAT 60.076 57.895 18.48 0.00 35.37 2.57
596 597 0.687427 CCCGGGAGCCCAATTGAATT 60.687 55.000 18.48 0.00 35.37 2.17
597 598 1.194218 CCGGGAGCCCAATTGAATTT 58.806 50.000 7.12 0.00 35.37 1.82
598 599 1.136891 CCGGGAGCCCAATTGAATTTC 59.863 52.381 7.12 0.00 35.37 2.17
599 600 1.136891 CGGGAGCCCAATTGAATTTCC 59.863 52.381 7.12 8.16 35.37 3.13
600 601 1.136891 GGGAGCCCAATTGAATTTCCG 59.863 52.381 7.12 0.00 35.81 4.30
601 602 1.471501 GGAGCCCAATTGAATTTCCGC 60.472 52.381 7.12 0.00 0.00 5.54
602 603 0.536724 AGCCCAATTGAATTTCCGCC 59.463 50.000 7.12 0.00 0.00 6.13
631 632 9.696917 GAGATGTTCCTACAAAATCACAAAAAT 57.303 29.630 0.00 0.00 37.91 1.82
659 660 7.848223 AAGAAGTGAATTTTCCACCAAAAAG 57.152 32.000 0.00 0.00 37.52 2.27
694 696 1.076332 GCTGTCACCAACATACGGTC 58.924 55.000 0.00 0.00 37.23 4.79
730 732 3.258372 TCCTGATCACACTACACTCCAAC 59.742 47.826 0.00 0.00 0.00 3.77
753 755 2.021457 ACAAACAGTGGCACTACAACC 58.979 47.619 21.59 0.00 0.00 3.77
1014 1025 2.440980 GCCATGGGCTTCCAGGTC 60.441 66.667 15.13 0.00 46.69 3.85
1017 1028 4.115199 ATGGGCTTCCAGGTCGCC 62.115 66.667 11.93 11.93 44.92 5.54
1104 1121 2.959071 GTGCTCGCGAGATCCTGC 60.959 66.667 38.74 23.43 40.84 4.85
1626 1676 1.671054 CGCCAACTTCACCGTCCAT 60.671 57.895 0.00 0.00 0.00 3.41
1758 1850 3.372660 GTCAAGACGTTCTCTTCTGGT 57.627 47.619 0.00 0.00 37.08 4.00
2241 2356 0.511221 AACTGTTCGACGAATTGCGG 59.489 50.000 14.27 8.62 46.49 5.69
2250 2365 2.667171 CGACGAATTGCGGGTTCAATTT 60.667 45.455 3.64 0.00 44.15 1.82
2759 2892 3.360956 CTTTTGGCCGGGCAGATGC 62.361 63.158 30.86 3.02 41.14 3.91
2807 2940 0.818445 GTCATCTCCCTGGCATGCAG 60.818 60.000 21.36 14.38 0.00 4.41
2831 2964 2.747855 GCTGTAGGCTGGTGGTGC 60.748 66.667 0.00 0.00 38.06 5.01
2850 2983 1.374947 CACAGCGGGGAGGAAGAAA 59.625 57.895 0.00 0.00 0.00 2.52
2853 2986 2.438614 GCGGGGAGGAAGAAAGGC 60.439 66.667 0.00 0.00 0.00 4.35
2875 3011 1.149401 TGGTGGCATGGACGTTTGA 59.851 52.632 0.00 0.00 0.00 2.69
2911 3047 2.475022 GCAACTTGCGTCCGGTAATTAC 60.475 50.000 7.09 7.09 31.71 1.89
2993 3129 3.941483 TGCAATCTTTCTCGGATCTTTCC 59.059 43.478 0.00 0.00 38.81 3.13
3013 3149 8.280084 TCTTTCCTATTTGTACTCTAGCCTCTA 58.720 37.037 0.00 0.00 0.00 2.43
3018 3154 5.405063 TTTGTACTCTAGCCTCTAGGGAT 57.595 43.478 7.67 0.00 37.23 3.85
3052 3188 2.097466 AGGTGCAAGTGAGAACGTTTTG 59.903 45.455 0.46 3.59 0.00 2.44
3179 3315 3.993920 AGCCGACCTTAAGTTTTTCGTA 58.006 40.909 0.97 0.00 0.00 3.43
3186 3322 7.307573 CCGACCTTAAGTTTTTCGTATTGACTT 60.308 37.037 0.97 0.00 35.07 3.01
3187 3323 8.066000 CGACCTTAAGTTTTTCGTATTGACTTT 58.934 33.333 0.97 0.00 33.13 2.66
3237 3393 1.413767 CTCGTCAACCGGATCAAGCG 61.414 60.000 9.46 4.95 37.11 4.68
3239 3395 0.806102 CGTCAACCGGATCAAGCGAT 60.806 55.000 9.46 0.00 33.31 4.58
3247 3403 2.233922 CCGGATCAAGCGATACCCTTAT 59.766 50.000 0.00 0.00 29.66 1.73
3254 3410 3.107642 AGCGATACCCTTATTCGGTTG 57.892 47.619 0.00 0.00 34.66 3.77
3270 3426 5.622770 TCGGTTGAAGGAAAATTCTAAGC 57.377 39.130 0.00 0.00 0.00 3.09
3271 3427 5.067273 TCGGTTGAAGGAAAATTCTAAGCA 58.933 37.500 0.00 0.00 0.00 3.91
3275 3431 4.072131 TGAAGGAAAATTCTAAGCAGCGT 58.928 39.130 0.00 0.00 0.00 5.07
3277 3433 3.412386 AGGAAAATTCTAAGCAGCGTGT 58.588 40.909 0.00 0.00 0.00 4.49
3278 3434 3.437049 AGGAAAATTCTAAGCAGCGTGTC 59.563 43.478 0.00 0.00 0.00 3.67
3307 3463 2.033299 GCTTATATTTGAGCAGCCGCAA 59.967 45.455 0.00 0.00 42.27 4.85
3308 3464 3.851105 GCTTATATTTGAGCAGCCGCAAG 60.851 47.826 0.00 0.00 42.27 4.01
3309 3465 0.383231 ATATTTGAGCAGCCGCAAGC 59.617 50.000 0.00 0.00 42.27 4.01
3310 3466 1.656818 TATTTGAGCAGCCGCAAGCC 61.657 55.000 0.00 0.00 45.47 4.35
3333 3512 4.996434 CCCGCATCGGCCATCCTC 62.996 72.222 2.24 0.00 46.86 3.71
3342 3521 1.694169 GGCCATCCTCCTTCCTCCA 60.694 63.158 0.00 0.00 0.00 3.86
3416 3595 3.760035 CGCACCTCCGCCTACACT 61.760 66.667 0.00 0.00 0.00 3.55
3417 3596 2.125512 GCACCTCCGCCTACACTG 60.126 66.667 0.00 0.00 0.00 3.66
3419 3598 2.603473 ACCTCCGCCTACACTGCA 60.603 61.111 0.00 0.00 0.00 4.41
3423 3602 2.507102 CCGCCTACACTGCAGACG 60.507 66.667 23.35 13.56 0.00 4.18
3424 3603 3.181967 CGCCTACACTGCAGACGC 61.182 66.667 23.35 12.34 39.24 5.19
3425 3604 2.262915 GCCTACACTGCAGACGCT 59.737 61.111 23.35 0.00 39.64 5.07
3455 3635 2.188817 AGCCCTCTTTGAATAGACCGT 58.811 47.619 0.00 0.00 0.00 4.83
3456 3636 2.572104 AGCCCTCTTTGAATAGACCGTT 59.428 45.455 0.00 0.00 0.00 4.44
3458 3638 3.868754 GCCCTCTTTGAATAGACCGTTGT 60.869 47.826 0.00 0.00 0.00 3.32
3465 3645 3.711541 ATAGACCGTTGTCGCGCCC 62.712 63.158 0.00 0.00 46.51 6.13
3482 3662 1.078426 CCGGTCACCCTGAATGGTC 60.078 63.158 0.00 0.00 36.12 4.02
3492 3672 0.533755 CTGAATGGTCGGATCCAGCC 60.534 60.000 13.41 13.29 41.05 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.459934 CCCGCGCCTCATTTATTTTTC 58.540 47.619 0.00 0.00 0.00 2.29
1 2 1.136110 CCCCGCGCCTCATTTATTTTT 59.864 47.619 0.00 0.00 0.00 1.94
2 3 0.744281 CCCCGCGCCTCATTTATTTT 59.256 50.000 0.00 0.00 0.00 1.82
3 4 0.395173 ACCCCGCGCCTCATTTATTT 60.395 50.000 0.00 0.00 0.00 1.40
4 5 0.470766 TACCCCGCGCCTCATTTATT 59.529 50.000 0.00 0.00 0.00 1.40
5 6 0.470766 TTACCCCGCGCCTCATTTAT 59.529 50.000 0.00 0.00 0.00 1.40
6 7 0.179067 CTTACCCCGCGCCTCATTTA 60.179 55.000 0.00 0.00 0.00 1.40
7 8 1.451387 CTTACCCCGCGCCTCATTT 60.451 57.895 0.00 0.00 0.00 2.32
8 9 2.189521 CTTACCCCGCGCCTCATT 59.810 61.111 0.00 0.00 0.00 2.57
9 10 3.081409 ACTTACCCCGCGCCTCAT 61.081 61.111 0.00 0.00 0.00 2.90
10 11 3.766691 GACTTACCCCGCGCCTCA 61.767 66.667 0.00 0.00 0.00 3.86
11 12 4.525949 GGACTTACCCCGCGCCTC 62.526 72.222 0.00 0.00 0.00 4.70
13 14 4.832608 CTGGACTTACCCCGCGCC 62.833 72.222 0.00 0.00 38.00 6.53
14 15 3.766691 TCTGGACTTACCCCGCGC 61.767 66.667 0.00 0.00 38.00 6.86
15 16 1.033746 TAGTCTGGACTTACCCCGCG 61.034 60.000 8.60 0.00 42.54 6.46
16 17 1.068741 CATAGTCTGGACTTACCCCGC 59.931 57.143 8.60 0.00 42.54 6.13
17 18 2.385803 ACATAGTCTGGACTTACCCCG 58.614 52.381 8.60 0.00 42.54 5.73
18 19 4.933505 GTACATAGTCTGGACTTACCCC 57.066 50.000 8.60 0.00 42.54 4.95
25 26 7.210174 TGCAAATCATAGTACATAGTCTGGAC 58.790 38.462 0.00 0.00 39.21 4.02
26 27 7.360113 TGCAAATCATAGTACATAGTCTGGA 57.640 36.000 0.00 0.00 0.00 3.86
27 28 8.437360 TTTGCAAATCATAGTACATAGTCTGG 57.563 34.615 8.05 0.00 0.00 3.86
46 47 9.486497 TGAACTGCATATATTTTCTTTTTGCAA 57.514 25.926 0.00 0.00 38.07 4.08
47 48 9.486497 TTGAACTGCATATATTTTCTTTTTGCA 57.514 25.926 0.00 0.00 37.13 4.08
61 62 8.137437 GGCAAGTATGTAAATTGAACTGCATAT 58.863 33.333 0.00 0.00 0.00 1.78
62 63 7.339212 AGGCAAGTATGTAAATTGAACTGCATA 59.661 33.333 0.00 0.00 0.00 3.14
63 64 6.153340 AGGCAAGTATGTAAATTGAACTGCAT 59.847 34.615 0.00 0.00 0.00 3.96
64 65 5.476599 AGGCAAGTATGTAAATTGAACTGCA 59.523 36.000 0.00 0.00 0.00 4.41
65 66 5.954335 AGGCAAGTATGTAAATTGAACTGC 58.046 37.500 0.00 0.00 0.00 4.40
66 67 8.816640 AAAAGGCAAGTATGTAAATTGAACTG 57.183 30.769 0.00 0.00 0.00 3.16
67 68 8.637986 TGAAAAGGCAAGTATGTAAATTGAACT 58.362 29.630 0.00 0.00 0.00 3.01
68 69 8.810652 TGAAAAGGCAAGTATGTAAATTGAAC 57.189 30.769 0.00 0.00 0.00 3.18
84 85 9.029243 CGCATAAATAAACAATATGAAAAGGCA 57.971 29.630 0.00 0.00 30.32 4.75
85 86 9.030301 ACGCATAAATAAACAATATGAAAAGGC 57.970 29.630 0.00 0.00 30.32 4.35
92 93 9.935682 ACTCTCAACGCATAAATAAACAATATG 57.064 29.630 0.00 0.00 0.00 1.78
93 94 9.935682 CACTCTCAACGCATAAATAAACAATAT 57.064 29.630 0.00 0.00 0.00 1.28
94 95 8.394877 CCACTCTCAACGCATAAATAAACAATA 58.605 33.333 0.00 0.00 0.00 1.90
95 96 7.120579 TCCACTCTCAACGCATAAATAAACAAT 59.879 33.333 0.00 0.00 0.00 2.71
96 97 6.428465 TCCACTCTCAACGCATAAATAAACAA 59.572 34.615 0.00 0.00 0.00 2.83
97 98 5.935206 TCCACTCTCAACGCATAAATAAACA 59.065 36.000 0.00 0.00 0.00 2.83
98 99 6.417191 TCCACTCTCAACGCATAAATAAAC 57.583 37.500 0.00 0.00 0.00 2.01
99 100 5.584649 CCTCCACTCTCAACGCATAAATAAA 59.415 40.000 0.00 0.00 0.00 1.40
100 101 5.116180 CCTCCACTCTCAACGCATAAATAA 58.884 41.667 0.00 0.00 0.00 1.40
101 102 4.161565 ACCTCCACTCTCAACGCATAAATA 59.838 41.667 0.00 0.00 0.00 1.40
102 103 3.055094 ACCTCCACTCTCAACGCATAAAT 60.055 43.478 0.00 0.00 0.00 1.40
103 104 2.301870 ACCTCCACTCTCAACGCATAAA 59.698 45.455 0.00 0.00 0.00 1.40
104 105 1.899814 ACCTCCACTCTCAACGCATAA 59.100 47.619 0.00 0.00 0.00 1.90
105 106 1.557099 ACCTCCACTCTCAACGCATA 58.443 50.000 0.00 0.00 0.00 3.14
106 107 0.687354 AACCTCCACTCTCAACGCAT 59.313 50.000 0.00 0.00 0.00 4.73
107 108 0.249868 CAACCTCCACTCTCAACGCA 60.250 55.000 0.00 0.00 0.00 5.24
108 109 0.033504 TCAACCTCCACTCTCAACGC 59.966 55.000 0.00 0.00 0.00 4.84
109 110 2.135933 GTTCAACCTCCACTCTCAACG 58.864 52.381 0.00 0.00 0.00 4.10
110 111 3.194005 TGTTCAACCTCCACTCTCAAC 57.806 47.619 0.00 0.00 0.00 3.18
111 112 3.390967 TGATGTTCAACCTCCACTCTCAA 59.609 43.478 0.00 0.00 0.00 3.02
112 113 2.972021 TGATGTTCAACCTCCACTCTCA 59.028 45.455 0.00 0.00 0.00 3.27
113 114 3.007398 AGTGATGTTCAACCTCCACTCTC 59.993 47.826 0.00 0.00 0.00 3.20
114 115 2.975489 AGTGATGTTCAACCTCCACTCT 59.025 45.455 0.00 0.00 0.00 3.24
115 116 3.007398 AGAGTGATGTTCAACCTCCACTC 59.993 47.826 18.75 18.75 38.35 3.51
116 117 2.975489 AGAGTGATGTTCAACCTCCACT 59.025 45.455 6.34 6.34 0.00 4.00
117 118 3.409026 AGAGTGATGTTCAACCTCCAC 57.591 47.619 0.00 0.00 0.00 4.02
118 119 5.762179 ATTAGAGTGATGTTCAACCTCCA 57.238 39.130 0.00 0.00 0.00 3.86
119 120 7.442666 GGAATATTAGAGTGATGTTCAACCTCC 59.557 40.741 0.00 0.00 0.00 4.30
120 121 7.442666 GGGAATATTAGAGTGATGTTCAACCTC 59.557 40.741 0.00 0.00 0.00 3.85
121 122 7.127955 AGGGAATATTAGAGTGATGTTCAACCT 59.872 37.037 0.00 0.00 0.00 3.50
122 123 7.283329 AGGGAATATTAGAGTGATGTTCAACC 58.717 38.462 0.00 0.00 0.00 3.77
123 124 8.207545 AGAGGGAATATTAGAGTGATGTTCAAC 58.792 37.037 0.00 0.00 0.00 3.18
124 125 8.206867 CAGAGGGAATATTAGAGTGATGTTCAA 58.793 37.037 0.00 0.00 0.00 2.69
125 126 7.345653 ACAGAGGGAATATTAGAGTGATGTTCA 59.654 37.037 0.00 0.00 0.00 3.18
126 127 7.731054 ACAGAGGGAATATTAGAGTGATGTTC 58.269 38.462 0.00 0.00 0.00 3.18
127 128 7.682787 ACAGAGGGAATATTAGAGTGATGTT 57.317 36.000 0.00 0.00 0.00 2.71
128 129 7.345653 TGAACAGAGGGAATATTAGAGTGATGT 59.654 37.037 0.00 0.00 0.00 3.06
129 130 7.730084 TGAACAGAGGGAATATTAGAGTGATG 58.270 38.462 0.00 0.00 0.00 3.07
130 131 7.921041 TGAACAGAGGGAATATTAGAGTGAT 57.079 36.000 0.00 0.00 0.00 3.06
131 132 7.921041 ATGAACAGAGGGAATATTAGAGTGA 57.079 36.000 0.00 0.00 0.00 3.41
132 133 8.970859 AAATGAACAGAGGGAATATTAGAGTG 57.029 34.615 0.00 0.00 0.00 3.51
133 134 9.981460 AAAAATGAACAGAGGGAATATTAGAGT 57.019 29.630 0.00 0.00 0.00 3.24
141 142 8.971073 CACCTTATAAAAATGAACAGAGGGAAT 58.029 33.333 0.00 0.00 0.00 3.01
142 143 7.093945 GCACCTTATAAAAATGAACAGAGGGAA 60.094 37.037 0.00 0.00 0.00 3.97
143 144 6.377146 GCACCTTATAAAAATGAACAGAGGGA 59.623 38.462 0.00 0.00 0.00 4.20
144 145 6.378280 AGCACCTTATAAAAATGAACAGAGGG 59.622 38.462 0.00 0.00 0.00 4.30
145 146 7.337942 AGAGCACCTTATAAAAATGAACAGAGG 59.662 37.037 0.00 0.00 0.00 3.69
146 147 8.273780 AGAGCACCTTATAAAAATGAACAGAG 57.726 34.615 0.00 0.00 0.00 3.35
147 148 9.383519 CTAGAGCACCTTATAAAAATGAACAGA 57.616 33.333 0.00 0.00 0.00 3.41
148 149 9.383519 TCTAGAGCACCTTATAAAAATGAACAG 57.616 33.333 0.00 0.00 0.00 3.16
149 150 9.162764 GTCTAGAGCACCTTATAAAAATGAACA 57.837 33.333 0.00 0.00 0.00 3.18
150 151 9.162764 TGTCTAGAGCACCTTATAAAAATGAAC 57.837 33.333 0.00 0.00 0.00 3.18
151 152 9.905713 ATGTCTAGAGCACCTTATAAAAATGAA 57.094 29.630 0.00 0.00 0.00 2.57
152 153 9.905713 AATGTCTAGAGCACCTTATAAAAATGA 57.094 29.630 0.00 0.00 0.00 2.57
155 156 9.733556 TGAAATGTCTAGAGCACCTTATAAAAA 57.266 29.630 0.00 0.00 0.00 1.94
156 157 9.383519 CTGAAATGTCTAGAGCACCTTATAAAA 57.616 33.333 0.00 0.00 0.00 1.52
157 158 8.758829 TCTGAAATGTCTAGAGCACCTTATAAA 58.241 33.333 0.00 0.00 0.00 1.40
158 159 8.198109 GTCTGAAATGTCTAGAGCACCTTATAA 58.802 37.037 0.00 0.00 0.00 0.98
159 160 7.342026 TGTCTGAAATGTCTAGAGCACCTTATA 59.658 37.037 0.00 0.00 0.00 0.98
160 161 6.155221 TGTCTGAAATGTCTAGAGCACCTTAT 59.845 38.462 0.00 0.00 0.00 1.73
161 162 5.480422 TGTCTGAAATGTCTAGAGCACCTTA 59.520 40.000 0.00 0.00 0.00 2.69
162 163 4.284490 TGTCTGAAATGTCTAGAGCACCTT 59.716 41.667 0.00 0.00 0.00 3.50
163 164 3.834813 TGTCTGAAATGTCTAGAGCACCT 59.165 43.478 0.00 0.00 0.00 4.00
164 165 4.180057 CTGTCTGAAATGTCTAGAGCACC 58.820 47.826 0.00 0.00 0.00 5.01
165 166 4.815269 ACTGTCTGAAATGTCTAGAGCAC 58.185 43.478 0.00 0.00 0.00 4.40
166 167 4.769488 AGACTGTCTGAAATGTCTAGAGCA 59.231 41.667 10.00 0.00 37.92 4.26
167 168 5.323371 AGACTGTCTGAAATGTCTAGAGC 57.677 43.478 10.00 0.00 37.92 4.09
174 175 9.778741 TCACTTTTATAAGACTGTCTGAAATGT 57.221 29.630 11.71 15.28 35.30 2.71
178 179 9.219603 CCATTCACTTTTATAAGACTGTCTGAA 57.780 33.333 11.71 8.25 35.30 3.02
179 180 8.593679 TCCATTCACTTTTATAAGACTGTCTGA 58.406 33.333 11.71 3.79 35.30 3.27
180 181 8.777865 TCCATTCACTTTTATAAGACTGTCTG 57.222 34.615 11.71 0.00 35.30 3.51
181 182 8.043710 CCTCCATTCACTTTTATAAGACTGTCT 58.956 37.037 4.06 4.06 35.30 3.41
182 183 7.281100 CCCTCCATTCACTTTTATAAGACTGTC 59.719 40.741 0.00 0.00 35.30 3.51
183 184 7.037586 TCCCTCCATTCACTTTTATAAGACTGT 60.038 37.037 0.00 0.00 35.30 3.55
184 185 7.338710 TCCCTCCATTCACTTTTATAAGACTG 58.661 38.462 0.00 0.00 35.30 3.51
185 186 7.182930 ACTCCCTCCATTCACTTTTATAAGACT 59.817 37.037 0.00 0.00 35.30 3.24
186 187 7.339482 ACTCCCTCCATTCACTTTTATAAGAC 58.661 38.462 0.00 0.00 35.30 3.01
187 188 7.510675 ACTCCCTCCATTCACTTTTATAAGA 57.489 36.000 0.00 0.00 35.30 2.10
188 189 8.487028 ACTACTCCCTCCATTCACTTTTATAAG 58.513 37.037 0.00 0.00 37.40 1.73
189 190 8.265055 CACTACTCCCTCCATTCACTTTTATAA 58.735 37.037 0.00 0.00 0.00 0.98
190 191 7.402071 ACACTACTCCCTCCATTCACTTTTATA 59.598 37.037 0.00 0.00 0.00 0.98
191 192 6.215636 ACACTACTCCCTCCATTCACTTTTAT 59.784 38.462 0.00 0.00 0.00 1.40
192 193 5.546499 ACACTACTCCCTCCATTCACTTTTA 59.454 40.000 0.00 0.00 0.00 1.52
193 194 4.351111 ACACTACTCCCTCCATTCACTTTT 59.649 41.667 0.00 0.00 0.00 2.27
194 195 3.910627 ACACTACTCCCTCCATTCACTTT 59.089 43.478 0.00 0.00 0.00 2.66
195 196 3.521727 ACACTACTCCCTCCATTCACTT 58.478 45.455 0.00 0.00 0.00 3.16
196 197 3.191888 ACACTACTCCCTCCATTCACT 57.808 47.619 0.00 0.00 0.00 3.41
197 198 3.260884 TGAACACTACTCCCTCCATTCAC 59.739 47.826 0.00 0.00 0.00 3.18
198 199 3.516586 TGAACACTACTCCCTCCATTCA 58.483 45.455 0.00 0.00 0.00 2.57
199 200 4.162320 TGATGAACACTACTCCCTCCATTC 59.838 45.833 0.00 0.00 0.00 2.67
200 201 4.104086 TGATGAACACTACTCCCTCCATT 58.896 43.478 0.00 0.00 0.00 3.16
201 202 3.724478 TGATGAACACTACTCCCTCCAT 58.276 45.455 0.00 0.00 0.00 3.41
202 203 3.184382 TGATGAACACTACTCCCTCCA 57.816 47.619 0.00 0.00 0.00 3.86
203 204 4.254492 GTTTGATGAACACTACTCCCTCC 58.746 47.826 0.00 0.00 38.18 4.30
204 205 4.020128 AGGTTTGATGAACACTACTCCCTC 60.020 45.833 0.00 0.00 40.13 4.30
205 206 3.910627 AGGTTTGATGAACACTACTCCCT 59.089 43.478 0.00 0.00 40.13 4.20
206 207 4.287766 AGGTTTGATGAACACTACTCCC 57.712 45.455 0.00 0.00 40.13 4.30
207 208 5.305585 TCAAGGTTTGATGAACACTACTCC 58.694 41.667 0.00 0.00 40.13 3.85
208 209 6.223852 TCTCAAGGTTTGATGAACACTACTC 58.776 40.000 0.00 0.00 40.13 2.59
209 210 6.042093 TCTCTCAAGGTTTGATGAACACTACT 59.958 38.462 0.00 0.00 40.13 2.57
210 211 6.223852 TCTCTCAAGGTTTGATGAACACTAC 58.776 40.000 0.00 0.00 40.13 2.73
211 212 6.419484 TCTCTCAAGGTTTGATGAACACTA 57.581 37.500 0.00 0.00 40.13 2.74
212 213 5.296151 TCTCTCAAGGTTTGATGAACACT 57.704 39.130 0.00 0.00 40.13 3.55
213 214 6.376978 CAATCTCTCAAGGTTTGATGAACAC 58.623 40.000 0.00 0.00 40.13 3.32
214 215 5.474532 CCAATCTCTCAAGGTTTGATGAACA 59.525 40.000 0.00 0.00 40.13 3.18
215 216 5.105997 CCCAATCTCTCAAGGTTTGATGAAC 60.106 44.000 0.00 0.00 39.30 3.18
216 217 5.012239 CCCAATCTCTCAAGGTTTGATGAA 58.988 41.667 0.00 0.00 39.30 2.57
217 218 4.289410 TCCCAATCTCTCAAGGTTTGATGA 59.711 41.667 0.00 0.00 39.30 2.92
218 219 4.592942 TCCCAATCTCTCAAGGTTTGATG 58.407 43.478 0.00 0.00 39.30 3.07
219 220 4.324874 CCTCCCAATCTCTCAAGGTTTGAT 60.325 45.833 0.00 0.00 39.30 2.57
220 221 3.009473 CCTCCCAATCTCTCAAGGTTTGA 59.991 47.826 0.00 0.00 38.17 2.69
221 222 3.009473 TCCTCCCAATCTCTCAAGGTTTG 59.991 47.826 0.00 0.00 0.00 2.93
222 223 3.260205 TCCTCCCAATCTCTCAAGGTTT 58.740 45.455 0.00 0.00 0.00 3.27
223 224 2.921221 TCCTCCCAATCTCTCAAGGTT 58.079 47.619 0.00 0.00 0.00 3.50
224 225 2.649742 TCCTCCCAATCTCTCAAGGT 57.350 50.000 0.00 0.00 0.00 3.50
225 226 3.044156 TGATCCTCCCAATCTCTCAAGG 58.956 50.000 0.00 0.00 0.00 3.61
226 227 4.978438 ATGATCCTCCCAATCTCTCAAG 57.022 45.455 0.00 0.00 0.00 3.02
227 228 5.722172 AAATGATCCTCCCAATCTCTCAA 57.278 39.130 0.00 0.00 0.00 3.02
228 229 5.192321 TCAAAATGATCCTCCCAATCTCTCA 59.808 40.000 0.00 0.00 0.00 3.27
229 230 5.688807 TCAAAATGATCCTCCCAATCTCTC 58.311 41.667 0.00 0.00 0.00 3.20
230 231 5.722172 TCAAAATGATCCTCCCAATCTCT 57.278 39.130 0.00 0.00 0.00 3.10
231 232 6.015603 GGAATCAAAATGATCCTCCCAATCTC 60.016 42.308 0.00 0.00 35.76 2.75
232 233 5.837438 GGAATCAAAATGATCCTCCCAATCT 59.163 40.000 0.00 0.00 35.76 2.40
233 234 5.011431 GGGAATCAAAATGATCCTCCCAATC 59.989 44.000 18.81 2.09 46.28 2.67
234 235 4.903649 GGGAATCAAAATGATCCTCCCAAT 59.096 41.667 18.81 0.00 46.28 3.16
235 236 4.289245 GGGAATCAAAATGATCCTCCCAA 58.711 43.478 18.81 0.00 46.28 4.12
236 237 3.688126 CGGGAATCAAAATGATCCTCCCA 60.688 47.826 21.54 0.00 46.90 4.37
237 238 2.887152 CGGGAATCAAAATGATCCTCCC 59.113 50.000 15.63 15.63 44.76 4.30
238 239 3.817647 CTCGGGAATCAAAATGATCCTCC 59.182 47.826 3.48 3.48 35.76 4.30
239 240 4.708177 TCTCGGGAATCAAAATGATCCTC 58.292 43.478 0.00 0.00 35.76 3.71
240 241 4.712476 CTCTCGGGAATCAAAATGATCCT 58.288 43.478 0.00 0.00 35.76 3.24
241 242 3.251972 GCTCTCGGGAATCAAAATGATCC 59.748 47.826 0.00 0.00 35.76 3.36
242 243 3.879295 TGCTCTCGGGAATCAAAATGATC 59.121 43.478 0.00 0.00 35.76 2.92
243 244 3.889815 TGCTCTCGGGAATCAAAATGAT 58.110 40.909 0.00 0.00 39.09 2.45
244 245 3.348647 TGCTCTCGGGAATCAAAATGA 57.651 42.857 0.00 0.00 0.00 2.57
245 246 4.644103 AATGCTCTCGGGAATCAAAATG 57.356 40.909 0.00 0.00 0.00 2.32
246 247 4.678840 GCAAATGCTCTCGGGAATCAAAAT 60.679 41.667 0.00 0.00 38.21 1.82
247 248 3.367292 GCAAATGCTCTCGGGAATCAAAA 60.367 43.478 0.00 0.00 38.21 2.44
248 249 2.164219 GCAAATGCTCTCGGGAATCAAA 59.836 45.455 0.00 0.00 38.21 2.69
249 250 1.745087 GCAAATGCTCTCGGGAATCAA 59.255 47.619 0.00 0.00 38.21 2.57
250 251 1.382522 GCAAATGCTCTCGGGAATCA 58.617 50.000 0.00 0.00 38.21 2.57
262 263 1.202114 TGTTCATTCGGGAGCAAATGC 59.798 47.619 0.00 0.00 42.49 3.56
263 264 3.574284 TTGTTCATTCGGGAGCAAATG 57.426 42.857 0.00 0.00 35.48 2.32
264 265 4.949856 AGTATTGTTCATTCGGGAGCAAAT 59.050 37.500 6.17 0.00 40.57 2.32
265 266 4.155826 CAGTATTGTTCATTCGGGAGCAAA 59.844 41.667 6.17 0.00 40.57 3.68
266 267 3.689161 CAGTATTGTTCATTCGGGAGCAA 59.311 43.478 0.00 0.00 41.26 3.91
267 268 3.270027 CAGTATTGTTCATTCGGGAGCA 58.730 45.455 0.00 0.00 0.00 4.26
268 269 2.032178 GCAGTATTGTTCATTCGGGAGC 59.968 50.000 0.00 0.00 0.00 4.70
269 270 3.270027 TGCAGTATTGTTCATTCGGGAG 58.730 45.455 0.00 0.00 0.00 4.30
270 271 3.342377 TGCAGTATTGTTCATTCGGGA 57.658 42.857 0.00 0.00 0.00 5.14
271 272 4.433186 TTTGCAGTATTGTTCATTCGGG 57.567 40.909 0.00 0.00 0.00 5.14
332 333 7.164230 ACACTAACAAGAACATCCACAAAAA 57.836 32.000 0.00 0.00 0.00 1.94
333 334 6.457663 CGACACTAACAAGAACATCCACAAAA 60.458 38.462 0.00 0.00 0.00 2.44
334 335 5.007234 CGACACTAACAAGAACATCCACAAA 59.993 40.000 0.00 0.00 0.00 2.83
335 336 4.509970 CGACACTAACAAGAACATCCACAA 59.490 41.667 0.00 0.00 0.00 3.33
336 337 4.055360 CGACACTAACAAGAACATCCACA 58.945 43.478 0.00 0.00 0.00 4.17
337 338 3.120649 GCGACACTAACAAGAACATCCAC 60.121 47.826 0.00 0.00 0.00 4.02
338 339 3.064207 GCGACACTAACAAGAACATCCA 58.936 45.455 0.00 0.00 0.00 3.41
339 340 3.064207 TGCGACACTAACAAGAACATCC 58.936 45.455 0.00 0.00 0.00 3.51
340 341 4.447724 TCTTGCGACACTAACAAGAACATC 59.552 41.667 2.37 0.00 44.97 3.06
341 342 4.377021 TCTTGCGACACTAACAAGAACAT 58.623 39.130 2.37 0.00 44.97 2.71
342 343 3.787785 TCTTGCGACACTAACAAGAACA 58.212 40.909 2.37 0.00 44.97 3.18
343 344 4.049186 TCTCTTGCGACACTAACAAGAAC 58.951 43.478 6.19 0.00 46.59 3.01
344 345 4.316205 TCTCTTGCGACACTAACAAGAA 57.684 40.909 6.19 0.00 46.59 2.52
345 346 4.316205 TTCTCTTGCGACACTAACAAGA 57.684 40.909 4.76 4.76 45.56 3.02
346 347 4.606232 CGTTTCTCTTGCGACACTAACAAG 60.606 45.833 0.00 0.00 41.70 3.16
347 348 3.244345 CGTTTCTCTTGCGACACTAACAA 59.756 43.478 0.00 0.00 0.00 2.83
348 349 2.792674 CGTTTCTCTTGCGACACTAACA 59.207 45.455 0.00 0.00 0.00 2.41
349 350 2.155155 CCGTTTCTCTTGCGACACTAAC 59.845 50.000 0.00 0.00 0.00 2.34
350 351 2.034939 TCCGTTTCTCTTGCGACACTAA 59.965 45.455 0.00 0.00 0.00 2.24
351 352 1.610038 TCCGTTTCTCTTGCGACACTA 59.390 47.619 0.00 0.00 0.00 2.74
352 353 0.387929 TCCGTTTCTCTTGCGACACT 59.612 50.000 0.00 0.00 0.00 3.55
353 354 0.784778 CTCCGTTTCTCTTGCGACAC 59.215 55.000 0.00 0.00 0.00 3.67
354 355 0.387929 ACTCCGTTTCTCTTGCGACA 59.612 50.000 0.00 0.00 0.00 4.35
355 356 2.251893 CTACTCCGTTTCTCTTGCGAC 58.748 52.381 0.00 0.00 0.00 5.19
356 357 1.884579 ACTACTCCGTTTCTCTTGCGA 59.115 47.619 0.00 0.00 0.00 5.10
357 358 1.986378 CACTACTCCGTTTCTCTTGCG 59.014 52.381 0.00 0.00 0.00 4.85
358 359 2.288886 ACCACTACTCCGTTTCTCTTGC 60.289 50.000 0.00 0.00 0.00 4.01
359 360 3.243771 ACACCACTACTCCGTTTCTCTTG 60.244 47.826 0.00 0.00 0.00 3.02
360 361 2.963782 ACACCACTACTCCGTTTCTCTT 59.036 45.455 0.00 0.00 0.00 2.85
361 362 2.595238 ACACCACTACTCCGTTTCTCT 58.405 47.619 0.00 0.00 0.00 3.10
362 363 3.382048 AACACCACTACTCCGTTTCTC 57.618 47.619 0.00 0.00 0.00 2.87
363 364 3.725490 GAAACACCACTACTCCGTTTCT 58.275 45.455 0.00 0.00 41.27 2.52
364 365 2.473984 CGAAACACCACTACTCCGTTTC 59.526 50.000 0.00 0.00 41.15 2.78
365 366 2.159057 ACGAAACACCACTACTCCGTTT 60.159 45.455 0.00 0.00 32.72 3.60
366 367 1.410153 ACGAAACACCACTACTCCGTT 59.590 47.619 0.00 0.00 0.00 4.44
367 368 1.000938 GACGAAACACCACTACTCCGT 60.001 52.381 0.00 0.00 0.00 4.69
368 369 1.694639 GACGAAACACCACTACTCCG 58.305 55.000 0.00 0.00 0.00 4.63
369 370 1.000938 ACGACGAAACACCACTACTCC 60.001 52.381 0.00 0.00 0.00 3.85
370 371 2.049228 CACGACGAAACACCACTACTC 58.951 52.381 0.00 0.00 0.00 2.59
371 372 1.677576 TCACGACGAAACACCACTACT 59.322 47.619 0.00 0.00 0.00 2.57
372 373 2.124011 TCACGACGAAACACCACTAC 57.876 50.000 0.00 0.00 0.00 2.73
373 374 2.867287 TTCACGACGAAACACCACTA 57.133 45.000 0.00 0.00 0.00 2.74
374 375 2.012937 TTTCACGACGAAACACCACT 57.987 45.000 0.00 0.00 38.72 4.00
375 376 2.810028 TTTTCACGACGAAACACCAC 57.190 45.000 0.00 0.00 43.35 4.16
394 395 6.508030 ACCCTAAAATGTCACCCAATTTTT 57.492 33.333 0.00 0.00 29.19 1.94
395 396 7.619512 TTACCCTAAAATGTCACCCAATTTT 57.380 32.000 0.00 0.00 29.19 1.82
396 397 7.806680 ATTACCCTAAAATGTCACCCAATTT 57.193 32.000 0.00 0.00 31.26 1.82
397 398 9.500701 AATATTACCCTAAAATGTCACCCAATT 57.499 29.630 0.00 0.00 0.00 2.32
398 399 9.500701 AAATATTACCCTAAAATGTCACCCAAT 57.499 29.630 0.00 0.00 0.00 3.16
399 400 8.754080 CAAATATTACCCTAAAATGTCACCCAA 58.246 33.333 0.00 0.00 0.00 4.12
400 401 7.343316 CCAAATATTACCCTAAAATGTCACCCA 59.657 37.037 0.00 0.00 0.00 4.51
401 402 7.343574 ACCAAATATTACCCTAAAATGTCACCC 59.656 37.037 0.00 0.00 0.00 4.61
402 403 8.194769 CACCAAATATTACCCTAAAATGTCACC 58.805 37.037 0.00 0.00 0.00 4.02
403 404 8.745590 ACACCAAATATTACCCTAAAATGTCAC 58.254 33.333 0.00 0.00 0.00 3.67
404 405 8.887264 ACACCAAATATTACCCTAAAATGTCA 57.113 30.769 0.00 0.00 0.00 3.58
405 406 9.797556 GAACACCAAATATTACCCTAAAATGTC 57.202 33.333 0.00 0.00 0.00 3.06
406 407 9.541884 AGAACACCAAATATTACCCTAAAATGT 57.458 29.630 0.00 0.00 0.00 2.71
436 437 6.402226 GGTTAAACATTTTGGCGTGTGAAAAA 60.402 34.615 0.00 0.00 0.00 1.94
437 438 5.063564 GGTTAAACATTTTGGCGTGTGAAAA 59.936 36.000 0.00 0.00 0.00 2.29
438 439 4.567159 GGTTAAACATTTTGGCGTGTGAAA 59.433 37.500 0.00 0.00 0.00 2.69
439 440 4.113354 GGTTAAACATTTTGGCGTGTGAA 58.887 39.130 0.00 0.00 0.00 3.18
440 441 3.491104 GGGTTAAACATTTTGGCGTGTGA 60.491 43.478 0.00 0.00 0.00 3.58
441 442 2.797719 GGGTTAAACATTTTGGCGTGTG 59.202 45.455 0.00 0.00 0.00 3.82
442 443 2.696187 AGGGTTAAACATTTTGGCGTGT 59.304 40.909 0.00 0.00 0.00 4.49
443 444 3.378911 AGGGTTAAACATTTTGGCGTG 57.621 42.857 0.00 0.00 0.00 5.34
444 445 4.409718 AAAGGGTTAAACATTTTGGCGT 57.590 36.364 0.00 0.00 0.00 5.68
445 446 5.053811 AGAAAAGGGTTAAACATTTTGGCG 58.946 37.500 19.65 0.00 0.00 5.69
446 447 6.288294 AGAGAAAAGGGTTAAACATTTTGGC 58.712 36.000 19.65 11.21 0.00 4.52
447 448 9.825109 TTTAGAGAAAAGGGTTAAACATTTTGG 57.175 29.630 19.65 0.00 0.00 3.28
453 454 9.863845 CAAAGTTTTAGAGAAAAGGGTTAAACA 57.136 29.630 0.00 0.00 35.21 2.83
454 455 8.814235 GCAAAGTTTTAGAGAAAAGGGTTAAAC 58.186 33.333 0.00 0.00 35.21 2.01
455 456 8.532819 TGCAAAGTTTTAGAGAAAAGGGTTAAA 58.467 29.630 0.00 0.00 35.21 1.52
456 457 8.068892 TGCAAAGTTTTAGAGAAAAGGGTTAA 57.931 30.769 0.00 0.00 35.21 2.01
457 458 7.558444 TCTGCAAAGTTTTAGAGAAAAGGGTTA 59.442 33.333 0.00 0.00 35.21 2.85
458 459 6.379988 TCTGCAAAGTTTTAGAGAAAAGGGTT 59.620 34.615 0.00 0.00 35.21 4.11
459 460 5.891551 TCTGCAAAGTTTTAGAGAAAAGGGT 59.108 36.000 0.00 0.00 35.21 4.34
460 461 6.183360 TGTCTGCAAAGTTTTAGAGAAAAGGG 60.183 38.462 0.00 0.00 35.21 3.95
461 462 6.795399 TGTCTGCAAAGTTTTAGAGAAAAGG 58.205 36.000 0.00 0.00 35.21 3.11
462 463 7.754924 TGTTGTCTGCAAAGTTTTAGAGAAAAG 59.245 33.333 9.48 0.00 34.33 2.27
463 464 7.598278 TGTTGTCTGCAAAGTTTTAGAGAAAA 58.402 30.769 9.48 4.09 36.22 2.29
464 465 7.151999 TGTTGTCTGCAAAGTTTTAGAGAAA 57.848 32.000 9.48 2.64 36.22 2.52
465 466 6.751514 TGTTGTCTGCAAAGTTTTAGAGAA 57.248 33.333 5.56 5.56 36.22 2.87
466 467 6.942532 ATGTTGTCTGCAAAGTTTTAGAGA 57.057 33.333 0.00 0.00 36.22 3.10
467 468 7.701924 TCAAATGTTGTCTGCAAAGTTTTAGAG 59.298 33.333 0.00 0.00 36.22 2.43
468 469 7.542890 TCAAATGTTGTCTGCAAAGTTTTAGA 58.457 30.769 0.00 0.00 36.22 2.10
469 470 7.754069 TCAAATGTTGTCTGCAAAGTTTTAG 57.246 32.000 0.00 0.00 36.22 1.85
470 471 7.201393 CGTTCAAATGTTGTCTGCAAAGTTTTA 60.201 33.333 0.00 0.00 36.22 1.52
471 472 6.400940 CGTTCAAATGTTGTCTGCAAAGTTTT 60.401 34.615 0.00 0.00 36.22 2.43
472 473 5.062058 CGTTCAAATGTTGTCTGCAAAGTTT 59.938 36.000 0.00 0.00 36.22 2.66
473 474 4.562394 CGTTCAAATGTTGTCTGCAAAGTT 59.438 37.500 0.00 0.00 36.22 2.66
474 475 4.104776 CGTTCAAATGTTGTCTGCAAAGT 58.895 39.130 0.00 0.00 36.22 2.66
475 476 4.104776 ACGTTCAAATGTTGTCTGCAAAG 58.895 39.130 0.00 0.00 36.22 2.77
476 477 4.103365 ACGTTCAAATGTTGTCTGCAAA 57.897 36.364 0.00 0.00 36.22 3.68
477 478 3.773860 ACGTTCAAATGTTGTCTGCAA 57.226 38.095 0.00 0.00 0.00 4.08
478 479 4.334203 AGTTACGTTCAAATGTTGTCTGCA 59.666 37.500 0.00 0.00 0.00 4.41
479 480 4.844267 AGTTACGTTCAAATGTTGTCTGC 58.156 39.130 0.00 0.00 0.00 4.26
541 542 9.765795 TCCTGCGAGGAAAAATAATTTTTAAAA 57.234 25.926 0.00 0.00 42.51 1.52
542 543 9.418045 CTCCTGCGAGGAAAAATAATTTTTAAA 57.582 29.630 6.39 0.00 45.28 1.52
543 544 7.544217 GCTCCTGCGAGGAAAAATAATTTTTAA 59.456 33.333 6.39 0.00 45.28 1.52
544 545 7.033185 GCTCCTGCGAGGAAAAATAATTTTTA 58.967 34.615 6.39 0.00 45.28 1.52
545 546 5.869344 GCTCCTGCGAGGAAAAATAATTTTT 59.131 36.000 6.39 0.00 45.28 1.94
546 547 5.047377 TGCTCCTGCGAGGAAAAATAATTTT 60.047 36.000 6.39 0.00 45.28 1.82
547 548 4.462483 TGCTCCTGCGAGGAAAAATAATTT 59.538 37.500 6.39 0.00 45.28 1.82
548 549 4.016444 TGCTCCTGCGAGGAAAAATAATT 58.984 39.130 6.39 0.00 45.28 1.40
549 550 3.378427 GTGCTCCTGCGAGGAAAAATAAT 59.622 43.478 6.39 0.00 45.28 1.28
550 551 2.747446 GTGCTCCTGCGAGGAAAAATAA 59.253 45.455 6.39 0.00 45.28 1.40
551 552 2.290008 TGTGCTCCTGCGAGGAAAAATA 60.290 45.455 6.39 0.00 45.28 1.40
552 553 1.168714 GTGCTCCTGCGAGGAAAAAT 58.831 50.000 6.39 0.00 45.28 1.82
553 554 0.179032 TGTGCTCCTGCGAGGAAAAA 60.179 50.000 6.39 0.00 45.28 1.94
554 555 0.036732 ATGTGCTCCTGCGAGGAAAA 59.963 50.000 6.39 0.00 45.28 2.29
555 556 0.674581 CATGTGCTCCTGCGAGGAAA 60.675 55.000 6.39 0.00 45.28 3.13
556 557 1.078918 CATGTGCTCCTGCGAGGAA 60.079 57.895 6.39 0.00 45.28 3.36
557 558 2.580815 CATGTGCTCCTGCGAGGA 59.419 61.111 5.03 5.03 43.43 3.71
558 559 3.200593 GCATGTGCTCCTGCGAGG 61.201 66.667 0.29 0.00 43.34 4.63
575 576 2.124151 CAATTGGGCTCCCGGGAG 60.124 66.667 41.29 41.29 44.56 4.30
576 577 1.580066 ATTCAATTGGGCTCCCGGGA 61.580 55.000 25.06 25.06 39.42 5.14
577 578 0.687427 AATTCAATTGGGCTCCCGGG 60.687 55.000 16.85 16.85 39.42 5.73
578 579 1.136891 GAAATTCAATTGGGCTCCCGG 59.863 52.381 5.42 0.00 39.42 5.73
579 580 1.136891 GGAAATTCAATTGGGCTCCCG 59.863 52.381 5.42 0.00 39.42 5.14
580 581 1.136891 CGGAAATTCAATTGGGCTCCC 59.863 52.381 5.42 0.00 0.00 4.30
581 582 1.471501 GCGGAAATTCAATTGGGCTCC 60.472 52.381 5.42 6.21 0.00 4.70
582 583 1.471501 GGCGGAAATTCAATTGGGCTC 60.472 52.381 5.42 0.00 0.00 4.70
583 584 0.536724 GGCGGAAATTCAATTGGGCT 59.463 50.000 5.42 0.00 0.00 5.19
584 585 0.805711 CGGCGGAAATTCAATTGGGC 60.806 55.000 5.42 0.00 0.00 5.36
585 586 0.814457 TCGGCGGAAATTCAATTGGG 59.186 50.000 7.21 0.00 0.00 4.12
586 587 1.742831 TCTCGGCGGAAATTCAATTGG 59.257 47.619 7.21 0.00 0.00 3.16
587 588 2.677836 TCTCTCGGCGGAAATTCAATTG 59.322 45.455 7.21 0.00 0.00 2.32
588 589 2.985896 TCTCTCGGCGGAAATTCAATT 58.014 42.857 7.21 0.00 0.00 2.32
589 590 2.691409 TCTCTCGGCGGAAATTCAAT 57.309 45.000 7.21 0.00 0.00 2.57
590 591 2.279741 CATCTCTCGGCGGAAATTCAA 58.720 47.619 7.21 0.00 0.00 2.69
591 592 1.207089 ACATCTCTCGGCGGAAATTCA 59.793 47.619 7.21 0.00 0.00 2.57
592 593 1.941325 ACATCTCTCGGCGGAAATTC 58.059 50.000 7.21 0.00 0.00 2.17
593 594 2.280628 GAACATCTCTCGGCGGAAATT 58.719 47.619 7.21 0.00 0.00 1.82
594 595 1.473434 GGAACATCTCTCGGCGGAAAT 60.473 52.381 7.21 0.00 0.00 2.17
595 596 0.108329 GGAACATCTCTCGGCGGAAA 60.108 55.000 7.21 0.00 0.00 3.13
596 597 0.970937 AGGAACATCTCTCGGCGGAA 60.971 55.000 7.21 0.00 0.00 4.30
597 598 0.106868 TAGGAACATCTCTCGGCGGA 60.107 55.000 7.21 2.06 0.00 5.54
598 599 0.030908 GTAGGAACATCTCTCGGCGG 59.969 60.000 7.21 0.00 0.00 6.13
599 600 0.738975 TGTAGGAACATCTCTCGGCG 59.261 55.000 0.00 0.00 0.00 6.46
600 601 2.961526 TTGTAGGAACATCTCTCGGC 57.038 50.000 0.00 0.00 34.97 5.54
601 602 5.292101 GTGATTTTGTAGGAACATCTCTCGG 59.708 44.000 0.00 0.00 34.97 4.63
602 603 5.869344 TGTGATTTTGTAGGAACATCTCTCG 59.131 40.000 0.00 0.00 34.97 4.04
631 632 8.754991 TTTGGTGGAAAATTCACTTCTTACTA 57.245 30.769 0.00 0.00 35.61 1.82
632 633 7.654022 TTTGGTGGAAAATTCACTTCTTACT 57.346 32.000 0.00 0.00 35.61 2.24
633 634 8.710835 TTTTTGGTGGAAAATTCACTTCTTAC 57.289 30.769 0.00 0.00 33.46 2.34
678 680 2.736144 TCTGACCGTATGTTGGTGAC 57.264 50.000 0.00 0.00 40.63 3.67
680 682 3.040147 ACTTCTGACCGTATGTTGGTG 57.960 47.619 0.00 0.00 40.63 4.17
710 712 3.245797 CGTTGGAGTGTAGTGTGATCAG 58.754 50.000 0.00 0.00 0.00 2.90
730 732 0.041312 GTAGTGCCACTGTTTGTGCG 60.041 55.000 7.83 0.00 44.92 5.34
743 745 3.431725 GCGGCCTGGTTGTAGTGC 61.432 66.667 0.00 0.00 0.00 4.40
753 755 2.664851 TGAACGTGAAGCGGCCTG 60.665 61.111 0.00 0.00 46.52 4.85
782 784 2.733218 CGCGTCTTGCCGTCTTGA 60.733 61.111 0.00 0.00 42.08 3.02
812 814 3.878667 CCAAGGGGATCCGGAGCC 61.879 72.222 31.09 31.09 38.33 4.70
813 815 1.342672 TAACCAAGGGGATCCGGAGC 61.343 60.000 12.38 12.38 38.33 4.70
823 826 1.254975 CGGGGGCTTTTAACCAAGGG 61.255 60.000 0.00 0.00 0.00 3.95
1087 1104 2.959071 GCAGGATCTCGCGAGCAC 60.959 66.667 30.97 23.98 0.00 4.40
1170 1193 1.371183 GCCCACGCCATCTATGCTA 59.629 57.895 0.00 0.00 0.00 3.49
1626 1676 1.344226 CGACGCTGTTGCTCATCGAA 61.344 55.000 11.19 0.00 38.74 3.71
1753 1845 4.056125 CGAGGCAGTGCGACCAGA 62.056 66.667 9.45 0.00 0.00 3.86
1830 1922 4.137872 GATTCGTCCCGCCGGTCA 62.138 66.667 1.90 0.00 0.00 4.02
1899 2000 1.300697 GATATTCTCCGCGCCCGTT 60.301 57.895 0.00 0.00 0.00 4.44
1932 2033 4.681978 GCCTGTTCGTCCACGGCT 62.682 66.667 0.00 0.00 40.29 5.52
1944 2045 0.846427 TCCTTTCCCAGATGGCCTGT 60.846 55.000 3.32 0.00 41.33 4.00
2270 2386 3.060138 GCGATTAACAGACACGTTGACAA 60.060 43.478 0.00 0.00 0.00 3.18
2722 2855 2.440796 TCCGGTCGCCGTATTCCT 60.441 61.111 15.38 0.00 46.80 3.36
2759 2892 3.077519 ATCGGGACTTTCGCCCTCG 62.078 63.158 0.00 0.00 43.72 4.63
2767 2900 1.673033 CGACAAGCTCATCGGGACTTT 60.673 52.381 10.88 0.00 34.67 2.66
2807 2940 2.045926 CAGCCTACAGCCACCCAC 60.046 66.667 0.00 0.00 45.47 4.61
2831 2964 2.124507 TTTCTTCCTCCCCGCTGTGG 62.125 60.000 0.00 0.00 37.55 4.17
2833 2966 1.679898 CTTTCTTCCTCCCCGCTGT 59.320 57.895 0.00 0.00 0.00 4.40
2837 2970 2.125106 CGCCTTTCTTCCTCCCCG 60.125 66.667 0.00 0.00 0.00 5.73
2850 2983 4.415150 CCATGCCACCACTCGCCT 62.415 66.667 0.00 0.00 0.00 5.52
2853 2986 2.815211 CGTCCATGCCACCACTCG 60.815 66.667 0.00 0.00 0.00 4.18
2911 3047 6.040247 TCTTTTGCTCATATACTACACACCG 58.960 40.000 0.00 0.00 0.00 4.94
2993 3129 6.544650 TCCCTAGAGGCTAGAGTACAAATAG 58.455 44.000 0.00 0.00 34.51 1.73
3013 3149 3.936408 TGGGCACTCCAAATCCCT 58.064 55.556 0.00 0.00 43.84 4.20
3052 3188 3.389221 ACAAATCGAATTTTGTGCCCAC 58.611 40.909 14.65 0.00 45.55 4.61
3061 3197 6.314784 GTGCAACTAGCTACAAATCGAATTT 58.685 36.000 0.00 0.00 45.94 1.82
3063 3199 4.032900 CGTGCAACTAGCTACAAATCGAAT 59.967 41.667 0.00 0.00 45.94 3.34
3064 3200 3.366724 CGTGCAACTAGCTACAAATCGAA 59.633 43.478 0.00 0.00 45.94 3.71
3219 3375 3.837409 TATCGCTTGATCCGGTTGACGA 61.837 50.000 0.00 5.41 37.97 4.20
3221 3377 1.859080 GTATCGCTTGATCCGGTTGAC 59.141 52.381 0.00 0.00 33.40 3.18
3224 3380 0.106149 GGGTATCGCTTGATCCGGTT 59.894 55.000 0.00 0.00 33.40 4.44
3237 3393 5.286267 TCCTTCAACCGAATAAGGGTATC 57.714 43.478 0.00 0.00 40.22 2.24
3239 3395 5.502089 TTTCCTTCAACCGAATAAGGGTA 57.498 39.130 0.00 0.00 40.22 3.69
3247 3403 5.533154 TGCTTAGAATTTTCCTTCAACCGAA 59.467 36.000 0.00 0.00 0.00 4.30
3254 3410 4.083271 ACACGCTGCTTAGAATTTTCCTTC 60.083 41.667 0.00 0.00 0.00 3.46
3271 3427 2.225791 TAAGCATCAGCCGACACGCT 62.226 55.000 0.00 0.00 43.56 5.07
3275 3431 4.702831 TCAAATATAAGCATCAGCCGACA 58.297 39.130 0.00 0.00 43.56 4.35
3277 3433 3.748048 GCTCAAATATAAGCATCAGCCGA 59.252 43.478 0.00 0.00 43.56 5.54
3278 3434 3.499537 TGCTCAAATATAAGCATCAGCCG 59.500 43.478 3.86 0.00 43.30 5.52
3333 3512 2.492090 CGAGCGAGTGGAGGAAGG 59.508 66.667 0.00 0.00 0.00 3.46
3399 3578 3.760035 AGTGTAGGCGGAGGTGCG 61.760 66.667 0.00 0.00 35.06 5.34
3400 3579 2.125512 CAGTGTAGGCGGAGGTGC 60.126 66.667 0.00 0.00 0.00 5.01
3402 3581 2.603473 TGCAGTGTAGGCGGAGGT 60.603 61.111 0.00 0.00 0.00 3.85
3408 3587 2.097038 CAGCGTCTGCAGTGTAGGC 61.097 63.158 14.67 11.83 46.23 3.93
3416 3595 2.781431 TAGGGGAGTCAGCGTCTGCA 62.781 60.000 2.45 0.00 46.23 4.41
3417 3596 2.010582 CTAGGGGAGTCAGCGTCTGC 62.011 65.000 2.45 0.00 43.24 4.26
3419 3598 1.755008 GCTAGGGGAGTCAGCGTCT 60.755 63.158 0.00 0.00 0.00 4.18
3423 3602 2.041405 AGGGCTAGGGGAGTCAGC 60.041 66.667 0.00 0.00 34.48 4.26
3424 3603 0.031616 AAGAGGGCTAGGGGAGTCAG 60.032 60.000 0.00 0.00 0.00 3.51
3425 3604 0.417841 AAAGAGGGCTAGGGGAGTCA 59.582 55.000 0.00 0.00 0.00 3.41
3475 3655 4.464262 GGCTGGATCCGACCATTC 57.536 61.111 16.18 0.00 39.34 2.67
3499 3679 3.637030 GATTTAGCGGCGGCGACC 61.637 66.667 36.87 18.64 46.35 4.79
3500 3680 2.457778 TTGATTTAGCGGCGGCGAC 61.458 57.895 36.87 25.08 46.35 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.