>input_sequence_49307
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ATGGGCTTCCAGGTCGCCGCCGTCGTGCCA
TCCCCGTGCGCGCCCTCGACCTCCTCGCGGTCCCCGTTCCTCGGCGGCGG------CTGCGGCGTGCTCGCGAGATCCTG
CGCGCCCGGCGGCCTTGCGGCCCGCCGGCGTGGCGAGGGGCGGCCC------GCGAGGTGCGCGCTGAGTGCTAGCATAG
ATGGCGTGGGCGGCGGGGACATGGAGTTCTTGAGGCGGATCGAGGAGCTGGCGGCGTCGGCGGGGGTGCGGACGGCGGGG
TGCGGGTGGCCGCCGAGCCTGGAGCGGAGCGCGAGCGGCGTCGGGCTGCCCCTGTCTCTTCGGATGCTGAAGCGGAAGAA
GCAGCAGCGGCG---GCAGCAGGTACCGCAGCCGTCGCGGTGGGACGAGCGCTTCCGCCTG---------------GGCT
CCGCCGGCGAGTCGGTGGGCCGCGCCTTCTCCTCCATGGTGCTCATCGTGCGGGAGCTGCAGAGCTTCGCGCTGCAG---
---CAGATGCTCTGCGAC---GACCTGCAGACCGTCCTGGCGCGCGCCCACGGCGAGATGCAGGACTCGTTCGTCTGGCT
CTTCCAGCACATCTTCGCCGGCACCCCGGCGCTCATGCTCTCCCTCATGCTCCTCCTCGCCAACTTCACCGTCCATTCGA
TGAGCAACAGCGTCGCCGCTGCCGCC---------------------------GTCGCGCCGACGCCGCCC---------
GCTGCTACGGTGGTCGACACCCAGCACACCGAGCCAT------CGAACCCGCGGTTCGACGCGGCTTCCGTCAAGACGTT
CTCTTCTGGTCGCACTGCCTCGGTCGGTGGGGGCAGCGGGGGTGGCGGCGATGTCCGGCCCGTCGCCGGCGCTTCCGGCG
ATGACCGGCGGGACGAATCCCGCTACAGTCTGAGCCGCGTCGCGCCAC---------AGCAACTAACGCCGCTGGCGGGA
ACGGGCGCGGAGAATATCGTGCCCGACGCCGCAGCCGTGGACGAACAGGCCATCTGGGAAAGGATGGTCGCGGAGGCCTC
GAGCATGCAGGCCAATGCGCGCGCCGACGAGTTGACGGACCCGGACGTGCTGGGGAACCTGGTCGCGCCGGTGGAGGCGG
AGATCGAGACGGAGGACGCCGGCG---AGTACGCGCGGACGGAGCAGAGGTACGAGCTGGCCGTGTCCGAGGAGCCCAAC
AACTCGCTCATCCTCGCCAACTTCGCCCAATTCCTCTACATCACGCGGAAGGACCACAAGCGGTAGGTCCCCG-------
-GCCA---CGCCCCCCAACTGTTCGACGAATTGCGGGTTCAATTTTTTTTACCGTGG-TATTGATTTGTCAACGTGTCTG
TTAATC--GCAGGGCGGAGCACTACTTCGAGCGGGCGGTGCGGGCGGA---GCCGGCGGACGCGGAGGCGCTGAGCCGGT
ACGCGACGTTCCTGTGGAGGGCGCGGGACGACGTCGAGGCGGCGGAGGAGACGTACCAGCAGGCCATCGCGGCCGACCCC
GGCAACGCGCACTACGCCGCCGCGTACGCGCATTTCCTCTGGAACACCGGCGGCGAGGACACGTGCTTCCCCCTCGACTG
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr1D_1_TraesCS1D01G277900
GAAAAATAAATGAGGCGCGGGGTAAGTCCAGACTATGTACTATGATTTGCAAAAAGAAAATATATGCAGTTCAATTTACA
TACTTGCCTTTTCATATTGTTTATTTATGCGTTGAGAGTGGAGGTTGAACATCACTCTAATATTCCCTCTGTTCATTTTT
ATAAGGTGCTCTAGACATTTCAGACAGTCTTATAAAAGTGAATGGAGGGAGTAGTGTTCATCAAACCTTGAGAGATTGGG
AGGATCATTTTGATTCCCGAGAGCATTTGCTCCCGAATGAACAATACTGCAAAAAAAAAATGGTAAAATGTTTTCAAAAA
AAACTATGAACTTTTTTGTGGATGTTCTTGTTAGTGTCGCAAGAGAAACGGAGTAGTGGTGTTTCGTCGTGAAAAAAAAT
TGGGTGACATTTTAGGGTAATATTTGGTGTTCTTTTTTTTTCACACGCCAAAATGTTTAACCCTTTTCTCTAAAACTTTG
CAGACAACATTTGAACGTAACTTATAAATACAAGAAGAAAATTGTTGAAACTTTTTTGACATTTTAAAAATTATTTTTCC
TCGCAGGAGCACATGCTCCCGGGAGCCCAATTGAATTTCCGCCGAGAGATGTTCCTACAAAATCACAAAAATAGTAAGAA
GTGAATTTTCCACCAAAAAGTTCCAAGAT-TTTTTTGCTGTCACCAACATACGGTCAGAAGTTTTTTCATCCTGATCACA
CTACACTCCAACGCACAAACAGTGGCACTACAACCAGGCCGCTTCACGTTCACGGGAGGCCGGTCAAGACGGCAAGACGC
GCACGCCCCTCCGGGCTCC-GGATCCCCTTGGTTAAAAGCCCCCGACGCGTTCCCTCGTC-TGCTCGCATCCAGCGAGCC
GCCTCCTTCGACGGCCGTGCGCGG-TTTTCACACCTCCCTCGCGCTCGCGGTGCTGATCTCGAGGCCCAACCAGAGGCCG
AGGGCTCTCGCCGCGCGCAGGGAAGGGGA------CCAGACAAGCTTGCCATGGGCTTCCAGGTCGCCGCCGTCGTGCCA
TCCCCGTGCGCGCCCTCGACCTCCTCGCGGTCCCCGTTCCTCGGCGGCGG------CTGCGGCGTGCTCGCGAGATCCTG
CGCGCCCGGCGGCCTTGCGGCCCGCCGGCGTGGCGAGGGGCGGCCC------GCGAGGTGCGCGCTGAGTGCTAGCATAG
ATGGCGTGGGCGGCGGGGACATGGAGTTCTTGAGGCGGATCGAGGAGCTGGCGGCGTCGGCGGGGGTGCGGACGGCGGGG
TGCGGGTGGCCGCCGAGCCTGGAGCGGAGCGCGAGCGGCGTCGGGCTGCCCCTGTCTCTTCGGATGCTGAAGCGGAAGAA
GCAGCAGCGGCG---GCAGCAGGTACCGCAGCCGTCGCGGTGGGACGAGCGCTTCCGCCTG---------------GGCT
CCGCCGGCGAGTCGGTGGGCCGCGCCTTCTCCTCCATGGTGCTCATCGTGCGGGAGCTGCAGAGCTTCGCGCTGCAG---
---CAGATGCTCTGCGAC---GACCTGCAGACCGTCCTGGCGCGCGCCCACGGCGAGATGCAGGACTCGTTCGTCTGGCT
CTTCCAGCACATCTTCGCCGGCACCCCGGCGCTCATGCTCTCCCTCATGCTCCTCCTCGCCAACTTCACCGTCCATTCGA
TGAGCAACAGCGTCGCCGCTGCCGCC---------------------------GTCGCGCCGACGCCGCCC---------
GCTGCTACGGTGGTCGACACCCAGCACACCGAGCCAT------CGAACCCGCGGTTCGACGCGGCTTCCGTCAAGACGTT
CTCTTCTGGTCGCACTGCCTCGGTCGGTGGGGGCAGCGGGGGTGGCGGCGATGTCCGGCCCGTCGCCGGCGCTTCCGGCG
ATGACCGGCGGGACGAATCCCGCTACAGTCTGAGCCGCGTCGCGCCAC---------AGCAACTAACGCCGCTGGCGGGA
ACGGGCGCGGAGAATATCGTGCCCGACGCCGCAGCCGTGGACGAACAGGCCATCTGGGAAAGGATGGTCGCGGAGGCCTC
GAGCATGCAGGCCAATGCGCGCGCCGACGAGTTGACGGACCCGGACGTGCTGGGGAACCTGGTCGCGCCGGTGGAGGCGG
AGATCGAGACGGAGGACGCCGGCG---AGTACGCGCGGACGGAGCAGAGGTACGAGCTGGCCGTGTCCGAGGAGCCCAAC
AACTCGCTCATCCTCGCCAACTTCGCCCAATTCCTCTACATCACGCGGAAGGACCACAAGCGGTAGGTCCCCG-------
-GCCA---CGCCCCCCAACTGTTCGACGAATTGCGGGTTCAATTTTTTTTACCGTGG-TATTGATTTGTCAACGTGTCTG
TTAATC--GCAGGGCGGAGCACTACTTCGAGCGGGCGGTGCGGGCGGA---GCCGGCGGACGCGGAGGCGCTGAGCCGGT
ACGCGACGTTCCTGTGGAGGGCGCGGGACGACGTCGAGGCGGCGGAGGAGACGTACCAGCAGGCCATCGCGGCCGACCCC
GGCAACGCGCACTACGCCGCCGCGTACGCGCATTTCCTCTGGAACACCGGCGGCGAGGACACGTGCTTCCCCCTCGACTG
ACGCGCG------------TGTTCTTGCGCCGGCCGCGGTGGATGCCGGCACGAGGCGAGACGCCGAGAGCACGGCACCA
TGGCCAGGCTAGTGGGCGGTGGATTGGAGCTGGGCTAACACATCATGATCCGTTTACTTAGTAGATTGAGTAGGAGCGTT
CAGGGGGCGGTGGGGTGGTGCTCCGGGAGTCCGTGGTGCCGTGTTTCCCGCCCCAGGAATACGGCGACCGGAGCTTTTGG
CCGGGCAGATGCGAGGGCGAAAGTCCCGATGAGCTTGTCGGTCATCTCCCTGGCATGCAGTGGGTGGCTGTAGGCTGGTG
GTGCCACAGCGGGGAGGAAGAAAGGCGA---GTGGTGGCATGGACGTTTGAATATGTTGTGTGTAGCAACTTGCGTCCGG
TAATTACGGTGTGTAGTATATGAGCAAAAGAACAAGTGAATAATAAGAAGGTGATGGTGATCTCGGTGCAATCTTTCTCG
GATCTTTCCTATTTGTACTCTAGCCTCTAGGGATTTGGAGTGCCCAAGGTGCAAGTGAGAACGTTTTGTGGGCACAAAAT
TCGATTTGTAGCTAGTTGCACGTTCCCCGCTGATCGATTAGTGTTGCTAGCAGTATATGGTTACTGATTATCGCCGATGT
TTAGAGCATCTCAAGCCGACCTTAAGTTTTTCGTATTGACTTT--------------------AAGGAATTTTGACTTAT
ATGAGATTTAATCCTCGTCAACCGGATCAAGCGATACCCTTATTCGGTTGAAGGAAAATTCTAAGCAGCGTGTCGGCTGA
TGCTTATATTTGAGCAGCCGCAAGCCCCTTCC-----------------------CCGCATCGGCCATCCTCCTTCCTCC
ACTCGCTCGCACCGCAGCCACATCGGTGCCGCCCCAAGCCACCTCGCAGCCCCTGCCCGCACCTCCGCCTACACTGCAGA
CGCTGACT-CCCCTAGCCCTCTTTGAATAGACCGTTGTCGCGCCCGGTCACCCTGAATGGTCGGATCCAGCCGTCGGGGG
TCGCCGCCGCTAAATCAACC
>chr1B_604
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GAGAGATGTTCCTACAAAATCACAAAAAAGCTAAGAA
GTGGATTTTCCACCCAAAAAGTGCCAAGA-TTTTTTGCTATGACCCAAATACGGTTAGAAGTTTTTTCATCTTGATCACA
CTACACTCCAAGGCACGAACAGTGACACTACAACTAGGCCGCTTCACGTTCACGGGAGGCCGGCCAAGACGGCAAGACGC
GCACGCCC-------CTCC-GGATCTCCTTGGTTAAAAGCCCCCGACGCGTTCCCTCCGTTTGCTCGCATCCAGCGAGTC
GCCTCCTTCGACGGCCGTGCGCGGTTTTCCACACCTCCCTCGCGCTCGCGGTGCTGATCTCGAGGCCCAACCAGAGGCCG
AGGGTTGTCGCCGCGCGCAGGGAAGGGGA------CCAGACAAGCTTGCCATGGGCTTCCAGGTGGCGGCCGTCGTGCCA
TCGCCGTGCCCGCCCTCGACTTCCTCGCGGTCCCCGTTCCTCGGTGGCGGCGGCGGCTGCGGCATGCTCGCGAGATCCTG
GGCGCCCGGCGGTCTTGTGTCGCGCCGGCGAGGCGAGGGGCGGCCA------GCGAGGTGCGCGCTGAGTGCCAGCATAG
ATGGCGTGGGCGGCGGGGACATGGAGTTCTTGAGGCGGATAGAGGAGCTGGCGGCGTCGGCGGGGGTGCGGACGGCGGGG
TGCGGGTGGCCGCCGAGCCTGGAACAGAGCGCGAGCAGCGTCGGGCTGCCCCTGTCCCTTAGGATTCTGAAGCGGAAGAA
GCAGCAGCGGCG---GCAGCAGGTGCCGCCGCGGTCGCGGTGGGACGAGCGGCTGAGCCTG---------------GGCT
CCGCCGGCGAGTCGGTGGGCCGCGCCTTCTCCTCCATGGTGCTCATCGTGCGGGAGCTGCAGAGCTTCGCGCTGCAG---
---CAGATGCTCTGCGAC---GACCTGCAGGCCGTCCTGGCGCGCGCCCACGGCGAGATGCAGGACTCGTTCGTCTGGCT
CTTCCAGCACATCTTCGCCGGCACCCCGGCGCTCATGCTCTCCCTCATGCTCCTCCTCGCCAACTTCACCGTCCACTCGA
TGAGCAACAGCGTCGCCGCCGCCGCC---------------------------GTCGCACCGACCCCGCCCGCTGCCCCG
GCTGCTACGGTGGTCGACACCCAGCACACCGAGCCAT------CCAACCCGCGGTTCGACGCGGCTTCCGTCAAGACGTT
CTCTGCTGGCCGCACTGCTTCGGTCGGTGGGGGTAGCGGGGGTGGCGGCGATGTCCGGCCCGTCGCGGGAGCTTCCGGCG
ACGACCGGGGGGACGAATCCCGCTACAGTCTAAGCCGCGTCGCACCAC---------AGCAACTAACGCCGCTGGCGGGG
ACGGGCGTGGAGAATGTCGTGCCCGGCGCCGCCGCCGTGGACGAGCAGGCCATCTGGGAAAGGATGGTCGCGGAGGCCTC
GAGCATGCAGGCCGATGCGCGCGCCGACGAGTTGACGGACCCGGACGTGCTGGGGAACCTGGTCGCGCCGGTGGAGGCGG
AGATCGAGACGGAGGACGTCGGCG---AGTACGCGCGGACGGAGCAAAGGTACAAGCTGGCCGTGTCCGAGGAGCCCAAC
AACTCGCTCATCCTCGCCAACTTCGCCCAATTCCTCTACATCACGCGGAAGGACCACAAGCGGTAGGTCCCCGCCTCCCC
GGCCA---CGCCCCCCAACTGTTCGACGAATTGCCAGTTCAATT-TTTTTACCGTGG-TATTGATCTGTCAACGTGTCTG
TTAATC--GCAGGGCGGAGCACTACTTCGAGCGGGCGGTGCGGGCGGA---GCCGACGGACGCGGAGGCGCTGAGCCGGT
ACGCGACGTTCCTGTGGAAGGCGCGGGACGACGTCGAGGCGGCGGAGGAGACGTACCAGGAGGCCATCGCGGCCGACCCC
GGCAACGCGCACTACGCCGCTGCGTACGCGCATTTCCTCTGGAACACCGGCGGCGAGGACACGTGCTTCCCCCTCGACTG
ACGCGCGGAGGAGGGGCCGTGTTCTTGCGCCTGCCGCGGTGGAGGCCGGCACGAGGCGAGACGCCGAGAGCACGGCACCA
TGGCCAGGCTAGTGGGCGGTGGATTGGAGCTGGGCTAACACATCATGATCCGTTTACTTAGTAGATTGAGTAGGAGTGTT
CAGGGGGCGGTGTGGTGGTGATCTGGGAGTCCGCGGTGCCGTGTTTCCCGCCCCGGGAATACGGCAGCCGGAGCTTTTGG
CCGTGCAGATGTGAGGGCG-AAGTCCCGATGAGCTTGTCGGTCATCTCCCTGGCATGCAATGGGTGGCTGTAGGCTGGTG
GTGGCGCAGTGAGGAGGAAGAAGGGGGA---GTGGTGGCACGGACGTTTGGATACGCTGCGTGTAGCAACTTGCGTCCGG
TAATTATGGTGTGTAGTATATGAGCAAAAGAACAAGTGAATAATAAGAAGGTGATGGTGATCTCGGTGCAATCTTTCTCG
GATGTTTCATATTTGTACTCTAGCCTCT-GGGA-TTGGAGCGCCCAAGGTGCAAGTGAGAACGTTTTTTGGGCACAGATA
TCGATTTGTAGCTAGTTGCACGTTCCCGT-TGATCGATTAGTGTTGCTAGCAGCATATGGTTACTGATTATCGCCGATGT
TTAGAGCATCTCAAGCCGATCTTAAGTTTTTCGTTTCGACT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr1A_604
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GAGAGATGTTCCTACAAAATCACAAAAAGGCTAAGAA
GTGAATTTTCCACCAAAAAATTCCAAGATCTTTTTTGCTATGGCCAAAATACGGTTAGAACTATTTTCATCTTGATCACA
CTACACTCCAAGGCACAAACAGTGACACTACAACTAGGCCGCTTCACATTCACGGGAGGCCGGCCAAGGCGGCAAGACGC
GCACGCCC-------CTCCTGGATCTCCTTGGTTAAAAGCACCCGACGCGTTCCCTCGTC-TGCTCGCATCCAGCCAGCC
GCCTCCTTCGACGGCCGTGCGCGG-TTTTCACACCTCCCTCGCGCCCGCGGTGCTGATCTCGAGGCCCAACCAGAGGCCG
AGGGCTCTCGCCGCGCGCAGGGAAGGGGACTAGGACCAGACAACCTAGCCATGGGCTTCCAGGTTGCGGCCGTCGTGCCG
TCGCCGTGCGCGCCCTCGACCTCCTCGCGGTCCCCGTTCCTTG---------------GCGGCAGGCTCATGAGATCCTG
GGCGCCCGGCGGTCTTGTGTCTCGCCGGCGTGGCGAGGGGCGGCCCGCGGGCGCGAGGTGCGCGCTGAGTGCCAGCATAG
ATGGCGTGGGCGGCGGGGACATGGAGTTCTTGAGGCGGATCGAGGAGCTAGCGGCGTCGGCGGGGGTGCGGACGGCGGGG
TGCGGGTGGCCGCCGAGCCTGGAGCGGAGCGCGAGCGGCGTCGGGCTGCCCCTGTCTCTTCGGATGCTGAAGCGGAAGAA
GCAGCAGCGGCGGCAGCAGCAGGTGCCGCAGCCGTCGCGGTGGGACGGGCGGCTCCGCCTG---------------GGCT
CCGCCGGCGAGTCGGTGGGCCGCGCCTTCTCCTCCATGGTGCTCATCGTGCGGGAGCTGCAGAGCTTCGCGCTGCAG---
---CAGATGCTCTGCGAC---GACCTGCAGGCCGTCCTGGCGCGCGCCCACGGCGAGATGCAGGACTCGTTCGTCTGGCT
CTTCCAGCACATCTTCGCCGGCACCCCGGCGCTCATGCTCTCCCTCATGCTCCTCCTCGCCAACTTCACCGTCCACTCCA
TGAGCAACAGCGTCGCCGCCGCCGCC---------------------------G------------------------CG
GCTGCCGCAGTGGTTGACGCCCAGCACACCGAGCCGT------CCAACCCGCGGTTCGACGCGGCTTCGGTCAAGACGTT
CTCTGCTGGCCGGACCGCCTCGGTCGGTGGGGGCAGCGGGAGTGGCGGCGATGTCCGGCCCGTCGCGGGCGCTTCCGGCG
ACGACCGGTGGGACGAATCCCGCTACAGTCTGAGCCGCGTCGCGCCAC---------AGCAACTAACGCCGCTGGCGGGG
ACGGGCGCGGAGAATGTCGTGCCCGACGCCGGCGCCGTGGACGAGCAGGCCATCTGGGAAAAGATGGTCGCGGAGGCCTC
GAGCATGCAGGCCGACGCGCGCGCCGACGAGCTGACGGACCCGGGCGTGCTGGGGAACCTGGTCGCGCCGGTGGAGGCGG
AGATCGAGACGGAGGACGCCGGCGGCGAGTACGCGCGGACGGAGCAGCGGTACGAGCTGGCCGTGTCCGAGGAGCCCAAC
AACTCGCTCATCCTCGCCAACTTCGCCCAATTCCTCTACATCACGCGCAAGGACCACAAGCGGTAGGCCTT--------C
GGTCA---CGCCCCCCAGTTGTTCGACGAATTGCCCGTCCA----TTTTCACCGTGGTTATTGATCTGTCGACGTATCTC
TTAATC--ACAGGGCGGAGCACTACTTCGAGCGGGCGGTGCGGGCGGA---GCCGGCGGACGCGGAGGCGCTGAGCCGGT
ACGCGACGTTCCTGTGGAGGGCGCGGGACGACGCCGAGGCGGCGGAGGAGACGTTCCAGCAGGCCATCGCGGCCGACCCC
GGCAACGCGCACTACGCCGCCGCCTACGCGCATTTCCTCTGGAACACCGGCGGCGAGGACACGTGCTTCCCCCTCGACTG
ACGCCCG------------TGTTCTTGCGCCGCCCGCGGTGGATGCCGGCGCGAGGCGAGACGCCGAGAGCACGGCACCA
TGGCCGGACTAGTGGGCGGTGGATTGGAGCTGGGCTAACACATGATGATCCGTTTACTTAGTAGATTGAGTAGGAGCGTT
CAGGGGGCGGTGAGGCGGTGATCCGGGAGTCCGTGGCGCCGTGTTTCCCGTCCCGGGAATACGGCGACCGGAGCTTTTGG
CCGGGCAGACGTGAGGGCG-AAGTCCCGATGAGCTTGCCGGTCATCTCCCTGGCATGCAATGGGTGGCTGTAGGCTGGCG
GTGGCGCAGTGGGGAGGAAGAAGGGTGAGTGGTGGTGGCATGGATGTTTGGATATGTTGTGTGTAGCAACTTGCGTCCGT
TAATTATGGTGTGTAGTATATGAGCAAAAGAACAAGTGAATAATAAGAAGGTGATGGTGATCGCGGTGCAATCTTTCTCG
GATCTTTCGTATTTGTACTCTAGCCTCTGGGGA-TTGGAGTGCCCAAGGTGCAAAA-----------------------A
TCGATTTGTAGCTAGTTGCACGTTCCCCGCTGATCGATTAGTGTTGCTAGCAGTATATGGTTACTGATTATCGCCGATGT
TTAGAGCATCTCAAGCGGATCTTAAGCTTTTCGTTTTGATTACACCCCTTTTCAAGGGGATTGAAGGAATTTTGACTTAT
ATGGAATTTAATCCCCCTCCACCGGATCAAGCCAAACCCTTAGTCGGTTTAAGGAAAATTCTAAGAGGCGCGAGGGCTGA
TGCTTATATTTGAGCAGCAGCAGCTGAGTCACTGGATAATTTTGGCCCCATCCCTCCGCATCGGCCATCCTTCTTCCTCC
CCTCGCTCGCACCGCAACCACGTTGGTGCTGCCCCAAGCCACCTCGCAGCCCCCGCCTCC-CCTCCACCTACACCACGGA
CCTCGACTCCCCCTAGCCCTCTTTGAATAGACCGCCGCCGCGCCTGGTCACCCTAAATGGTTGGATCCAGCTGTCGGGCA
TCGCCGCCGTCGAATCAACC
>chr3A_1201
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GGAGTTCCTCAGGAGGATCCAGGAGCTCGCCGTCGGGCTGCACCCGGGCGCCGGCGGC
TGCGGCTGGCCGGCCAGCGTGGAGAGGAGCGCCAGCAGCGTCGGGCTGCCGCTGTCGCTCAGGATGCTCAAGCGCAAGAA
ACGGCAGCAGGGCCAGCGCGGC---------------CGGTGGGACGAGCGGCTGCTCGACCGCGCCGGCGAGTCCGGCT
CCGGCCGCGGCGCTGTGGGACGGGCGTTCTCCTCCATGGTGCTCATCATCCGGGAGCTCCAGAGCTTCGCGCTGCAGATG
CGGCAGACGCTCTTCTACGAGGACATGCAGAGCGTGCTGGCGCGCGTCCACGCCGAGATGGACGCCTCCTTCGTCTGGCT
CTTCCAGCACATCTTCGCCGGCACCCCCGCCCTCATGGTCTCCGTCATGCTCCTCCTCGCCAACTTCACCGTCTACTCCA
TGGGCGACAACATCGCGATGGCCGCCAACCTCCCGCCTCCCCAGCCCACCGTGG------------------------CG
GCCGTCGCAATGCTCGACGCCCAGCACGCGGAGCAGTCCCGTCCCGATCAGCGGTTCGACAGCGTGTCGCTCAACATGTT
CTCCATTGGCCGCACGGCCTCGGTGGACGGGAACAGCGGCGGCGGCGGCAAGGCTCCGCCGGTCGCCGGGGCCACCGGCG
ACGATCGCTCGGACGAATCCTCGTACCGGCAAAGCGGCGCGGTGCTTCCACAGGACGAGTCACAGGCGACGCCGGTGGGG
GCGGCCGCGGAGGACACGGA------------------GGACGAGCTCATCATCTGGAAAAGGATAGCCGACGAGGCGAC
GAGAATGCAGGCGAGCGTGCGCGTGGAGGCGCTGATGGACCCGGACATCCTGGCGCAGCTCGTCGCGCCGGTGGAGGCGA
AGATGGACACGGAGGACCTGGCCG---ACCACGCGAAGACGGAGCAGAGATACGCGATGGCCGTGTCCGAGGAGCCGAGC
AACGCGCTGCTGCTCGCCAACTTCGCGCAGTTCCTGTACCTGGTGCAGCGCGATCACGACCGGTACGTGCCCC-------
-GCCATGGCGCCACCAAACTGTTCGACACAATGTCATCGTC----TTTTCACCGTCGCTGACGGGCGGTGGTTTTTCCTG
---ATC--GCAGGGCGGAGCATTACTTCAAGCGGGCGGTGCGCGCGGAGCAGCCGGCGGACGCGGAGACGCTGGGGTGGT
ACGCTACGTTCCTGTGGAAGGCGCGCAACGACCTGGCGGCCGCGGAGGAGACGTTCCAGGAGGCCATTGCCGCCGAGCCC
AGCAACGGGCACCACGCGGCGGCCTACGCGCACTTCCTGTGGAACACGGGCGGCGAGGACACATGCTACCCCCTCGACTG
ACGCGCG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr3D_1251
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CGGCGGC
TGCGGCTGGCCGGCGAGCGTGGAGCGGAGCGCCAGCAGCGTCGGCCTGCCGCTGTCGCTCAGGATGCTCAAGCGCAAGAA
GCGGCAGCAGGGGCAGCGCGGC---------------CGGTGGGACGAGCGGCTGCTCGACCGCGCCGGCGAGTCCGGCT
CCGGCCGCGGCGCTGTGGGACGGGCGTTCTCGTCCATGGTGCTCATCATCCGGGAGCTCCAGAGCTTCGCGCTGCAGATG
CGGCAGGCGCTCTTCTACGAGGACATGCAGAGCGTGCTCGCGCGCGTCCACGCCGAGATGGACGCCTCCTTCGTCTGGCT
CTTCCAGCACATCTTCGCCGGCACCCCCGCCCTCATGGTCTCCGTCATGATCCTCCTCGCCAACTTCACCGTCTACTCCA
TGGGTGACAATATCGCGATGGCCGCCAACCTCCCGCCTCCCCAGCCCACCGTTG------------------------CG
GCCGTCGCAATGCTCGACGCCCAGCACGCGGAGCAGTCCCGTCCCGATCAGCGGTTCGACAGCGTGTCGCTCAACATGTT
CTCCATTGGCCGCACGGCCTCGGTGGACGGGAGCAGCGGCGGCGGTGGCAAGGCTCCGCCGGTCGCCGGGGCCACCGGCG
ACGATCGCTCGGACGAATCCTCGTACCGGCAAAGCGGCGCGGTGCTTCCTCAGGACGAGTCACAGGCGACGCCGGTGGGG
GCGGCCGCGGAGGACACGGA------------------GGACGAGCTGGTCATCTGGAAAAGGATAGCCGACGAGGCGAC
GAGAATGCAGGCGAGCGTGCGCGTGGAGGCTCTGATGGACCCGGACATCCTGGGGCAGCTCGTCGCGCCGGTGGAGGCGA
AGCTGGACACGGAGGACGTGGCCG---ATTACGCGAGGACGGAGCAGAGATACGCGATGGCCGTGTCCGAGGAGCCCAGC
AACGCGCTGCTGCTCGCCAACTTCGCGCAGTTCCTGTACCTGGTGCAGCGCGATCACGACCGGTACGTGCCGC-------
-GCCATGGCGCCACCAACCTGTTCGACGCAATGTCATCGTT----TTTTCACCGCCGCTGACGGGCGGTGGTTTCTCCAT
GGTCGCATGCAGGGCGGAGCACTACTTCAAGCGGGCGGTGCGCGCGGAGCAGCCGGCGGACGCGGAGACGCTGGGGTGGT
ACGCGACGTTCCTGTGGAAGGCGCGCAACGACCTGGCGGCCGCGGAGGAGACGTTCCAGGAGGCCATCGCCGCCGAGCCC
AGCAACGGGCACCACGCGGCGGCCTACGCGCACTTCCTGTGGAACACGGGCGGCGAGGACACATGCTACCCCCTCGACTG
ACGCGCG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------SSS------
-------------------S-------------------S-S-----S-------S---------------S--------
-----------S------------S---------S----------------------------S----------------
--------SSSSSSS----------S------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S--S------------
--S-----------------------------------------S------------------S----------------
S-----------S----S-S-S--------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S--------------------------SS---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-------------------S--------------------------------------S-----S---------------
--------------------------------------------S-----------------------------------
----S----S----------------------------------------------------------------------
-S------S----------------------------------------------------------------------S
--------------------------------S-----------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------SS--------S--------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-------S---------------------------------S-------------------------
-----------S-------S---------------------------------------S--------------------
---S-S---S------------S--S------------------------S-----------------------------
------S-------------------------------------------------------------------------
--------S-------------------S----S---------------------------------S--------S-SS
--------------------------------------------------------------------------------
-------------------S--------------S------SS-------------------------------------
---SS---------S-S--S------------S-S-------S------S---------------SS---S-SS------
------------------S---SSSSSS-SS----------------------------------------S--------
S---------------S----S-S-----S-----------------------S---SS-S-----S-------SS-S--
-SSS------------------------------SS-S------S---------S------S---------S------SS
---------SSS--------
>forward_128
--------------------------------------------------------------------------------
----------------------------GCGTTGAGAGTGGAGGTTGA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_2045
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ACAGGCCATCTGGGAAAGGA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>forward_574
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTTCC
TCGCAGGAGCACAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_2386
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TTGTCAACGTGTCTG
TTAATCGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>forward_2356
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------AACTGTTCGACGAATTGCGG--------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_3603
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CTGACTCCCCTAGCCCTCTT----------------------------------------------------------
--------------------
