Multiple sequence alignment - TraesCS1D01G277400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G277400 chr1D 100.000 1508 0 0 997 2504 374451506 374449999 0.000000e+00 2785.0
1 TraesCS1D01G277400 chr1D 100.000 609 0 0 1 609 374452502 374451894 0.000000e+00 1125.0
2 TraesCS1D01G277400 chr1A 92.664 1513 75 21 997 2482 474220459 474218956 0.000000e+00 2146.0
3 TraesCS1D01G277400 chr1A 86.145 166 19 4 66 228 581034168 581034332 2.560000e-40 176.0
4 TraesCS1D01G277400 chr1A 86.747 83 1 1 535 607 474220610 474220528 1.600000e-12 84.2
5 TraesCS1D01G277400 chr1A 100.000 34 0 0 2452 2485 474218978 474218945 2.080000e-06 63.9
6 TraesCS1D01G277400 chr1B 92.447 1046 52 13 997 2026 499219267 499218233 0.000000e+00 1469.0
7 TraesCS1D01G277400 chr1B 89.065 567 47 12 1949 2504 499218227 499217665 0.000000e+00 689.0
8 TraesCS1D01G277400 chr1B 81.481 243 39 6 92 330 499244499 499244259 7.070000e-46 195.0
9 TraesCS1D01G277400 chr3D 90.133 375 36 1 1081 1454 477010080 477010454 1.040000e-133 486.0
10 TraesCS1D01G277400 chr3A 89.333 375 39 1 1081 1454 620604109 620604483 1.050000e-128 470.0
11 TraesCS1D01G277400 chr3A 78.855 227 40 6 78 298 146566419 146566643 2.010000e-31 147.0
12 TraesCS1D01G277400 chr3B 89.067 375 40 1 1081 1454 636242600 636242974 4.880000e-127 464.0
13 TraesCS1D01G277400 chr3B 78.992 238 42 8 66 296 556366087 556366323 3.330000e-34 156.0
14 TraesCS1D01G277400 chr2A 85.799 169 21 3 66 231 752464768 752464936 2.560000e-40 176.0
15 TraesCS1D01G277400 chr4A 84.746 177 23 4 66 238 93923190 93923366 9.210000e-40 174.0
16 TraesCS1D01G277400 chr4A 84.831 178 22 5 66 238 497090504 497090681 9.210000e-40 174.0
17 TraesCS1D01G277400 chr7A 86.624 157 19 2 78 232 170187450 170187294 3.310000e-39 172.0
18 TraesCS1D01G277400 chr6D 84.091 176 25 3 66 238 453168154 453167979 1.540000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G277400 chr1D 374449999 374452502 2503 True 1955.0 2785 100.000 1 2504 2 chr1D.!!$R1 2503
1 TraesCS1D01G277400 chr1A 474218945 474220610 1665 True 764.7 2146 93.137 535 2485 3 chr1A.!!$R1 1950
2 TraesCS1D01G277400 chr1B 499217665 499219267 1602 True 1079.0 1469 90.756 997 2504 2 chr1B.!!$R2 1507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.030092 TATAGAGCCCACCAGCCCTT 60.03 55.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1830 0.178944 TCCTCTGGAACTCAACCCGA 60.179 55.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.030562 CCGTGCTTCCAACTCGGT 59.969 61.111 0.00 0.00 38.89 4.69
18 19 1.597027 CCGTGCTTCCAACTCGGTT 60.597 57.895 0.00 0.00 38.89 4.44
19 20 1.164041 CCGTGCTTCCAACTCGGTTT 61.164 55.000 0.00 0.00 38.89 3.27
20 21 0.661020 CGTGCTTCCAACTCGGTTTT 59.339 50.000 0.00 0.00 35.57 2.43
21 22 1.868498 CGTGCTTCCAACTCGGTTTTA 59.132 47.619 0.00 0.00 35.57 1.52
22 23 2.482721 CGTGCTTCCAACTCGGTTTTAT 59.517 45.455 0.00 0.00 35.57 1.40
23 24 3.424433 CGTGCTTCCAACTCGGTTTTATC 60.424 47.826 0.00 0.00 35.57 1.75
24 25 3.751698 GTGCTTCCAACTCGGTTTTATCT 59.248 43.478 0.00 0.00 35.57 1.98
25 26 4.215613 GTGCTTCCAACTCGGTTTTATCTT 59.784 41.667 0.00 0.00 35.57 2.40
26 27 4.215399 TGCTTCCAACTCGGTTTTATCTTG 59.785 41.667 0.00 0.00 35.57 3.02
27 28 4.215613 GCTTCCAACTCGGTTTTATCTTGT 59.784 41.667 0.00 0.00 35.57 3.16
28 29 5.617087 GCTTCCAACTCGGTTTTATCTTGTC 60.617 44.000 0.00 0.00 35.57 3.18
29 30 5.223449 TCCAACTCGGTTTTATCTTGTCT 57.777 39.130 0.00 0.00 35.57 3.41
30 31 5.617252 TCCAACTCGGTTTTATCTTGTCTT 58.383 37.500 0.00 0.00 35.57 3.01
31 32 5.468746 TCCAACTCGGTTTTATCTTGTCTTG 59.531 40.000 0.00 0.00 35.57 3.02
32 33 5.238650 CCAACTCGGTTTTATCTTGTCTTGT 59.761 40.000 0.00 0.00 0.00 3.16
33 34 6.238648 CCAACTCGGTTTTATCTTGTCTTGTT 60.239 38.462 0.00 0.00 0.00 2.83
34 35 6.937436 ACTCGGTTTTATCTTGTCTTGTTT 57.063 33.333 0.00 0.00 0.00 2.83
35 36 7.329588 ACTCGGTTTTATCTTGTCTTGTTTT 57.670 32.000 0.00 0.00 0.00 2.43
36 37 7.768240 ACTCGGTTTTATCTTGTCTTGTTTTT 58.232 30.769 0.00 0.00 0.00 1.94
37 38 7.913821 ACTCGGTTTTATCTTGTCTTGTTTTTC 59.086 33.333 0.00 0.00 0.00 2.29
38 39 7.197703 TCGGTTTTATCTTGTCTTGTTTTTCC 58.802 34.615 0.00 0.00 0.00 3.13
39 40 6.141685 CGGTTTTATCTTGTCTTGTTTTTCCG 59.858 38.462 0.00 0.00 0.00 4.30
40 41 6.976349 GGTTTTATCTTGTCTTGTTTTTCCGT 59.024 34.615 0.00 0.00 0.00 4.69
41 42 8.130469 GGTTTTATCTTGTCTTGTTTTTCCGTA 58.870 33.333 0.00 0.00 0.00 4.02
42 43 9.505995 GTTTTATCTTGTCTTGTTTTTCCGTAA 57.494 29.630 0.00 0.00 0.00 3.18
96 97 7.945033 GTTTTTCAAAACCTATCAGCATTGA 57.055 32.000 4.09 0.00 41.77 2.57
97 98 8.538409 GTTTTTCAAAACCTATCAGCATTGAT 57.462 30.769 4.09 0.00 42.71 2.57
98 99 8.650714 GTTTTTCAAAACCTATCAGCATTGATC 58.349 33.333 4.09 0.00 41.21 2.92
99 100 7.707624 TTTCAAAACCTATCAGCATTGATCT 57.292 32.000 0.00 0.00 42.97 2.75
100 101 8.806429 TTTCAAAACCTATCAGCATTGATCTA 57.194 30.769 0.00 0.00 42.97 1.98
101 102 8.442632 TTCAAAACCTATCAGCATTGATCTAG 57.557 34.615 0.00 0.00 42.97 2.43
102 103 7.568349 TCAAAACCTATCAGCATTGATCTAGT 58.432 34.615 0.00 0.00 42.97 2.57
103 104 8.049117 TCAAAACCTATCAGCATTGATCTAGTT 58.951 33.333 0.00 0.00 42.97 2.24
104 105 8.341173 CAAAACCTATCAGCATTGATCTAGTTC 58.659 37.037 0.00 0.00 42.97 3.01
105 106 6.992664 ACCTATCAGCATTGATCTAGTTCT 57.007 37.500 2.61 0.00 42.97 3.01
106 107 8.484214 AACCTATCAGCATTGATCTAGTTCTA 57.516 34.615 2.61 0.00 42.97 2.10
107 108 8.484214 ACCTATCAGCATTGATCTAGTTCTAA 57.516 34.615 2.61 0.00 42.97 2.10
108 109 8.928448 ACCTATCAGCATTGATCTAGTTCTAAA 58.072 33.333 2.61 0.00 42.97 1.85
109 110 9.770097 CCTATCAGCATTGATCTAGTTCTAAAA 57.230 33.333 2.61 0.00 42.97 1.52
113 114 9.539825 TCAGCATTGATCTAGTTCTAAAATCTC 57.460 33.333 2.61 0.00 0.00 2.75
114 115 9.322773 CAGCATTGATCTAGTTCTAAAATCTCA 57.677 33.333 2.61 0.00 0.00 3.27
115 116 9.896645 AGCATTGATCTAGTTCTAAAATCTCAA 57.103 29.630 2.61 0.00 0.00 3.02
116 117 9.928236 GCATTGATCTAGTTCTAAAATCTCAAC 57.072 33.333 2.61 0.00 0.00 3.18
118 119 7.757097 TGATCTAGTTCTAAAATCTCAACGC 57.243 36.000 2.61 0.00 0.00 4.84
119 120 6.472486 TGATCTAGTTCTAAAATCTCAACGCG 59.528 38.462 3.53 3.53 0.00 6.01
120 121 5.946298 TCTAGTTCTAAAATCTCAACGCGA 58.054 37.500 15.93 0.00 0.00 5.87
121 122 6.384224 TCTAGTTCTAAAATCTCAACGCGAA 58.616 36.000 15.93 0.00 0.00 4.70
122 123 5.917541 AGTTCTAAAATCTCAACGCGAAA 57.082 34.783 15.93 0.00 0.00 3.46
123 124 6.295039 AGTTCTAAAATCTCAACGCGAAAA 57.705 33.333 15.93 0.00 0.00 2.29
124 125 6.721321 AGTTCTAAAATCTCAACGCGAAAAA 58.279 32.000 15.93 0.00 0.00 1.94
125 126 7.360361 AGTTCTAAAATCTCAACGCGAAAAAT 58.640 30.769 15.93 0.00 0.00 1.82
126 127 7.534239 AGTTCTAAAATCTCAACGCGAAAAATC 59.466 33.333 15.93 0.00 0.00 2.17
127 128 6.311723 TCTAAAATCTCAACGCGAAAAATCC 58.688 36.000 15.93 0.00 0.00 3.01
128 129 4.497473 AAATCTCAACGCGAAAAATCCA 57.503 36.364 15.93 0.00 0.00 3.41
129 130 4.497473 AATCTCAACGCGAAAAATCCAA 57.503 36.364 15.93 0.00 0.00 3.53
130 131 3.262135 TCTCAACGCGAAAAATCCAAC 57.738 42.857 15.93 0.00 0.00 3.77
131 132 1.969256 CTCAACGCGAAAAATCCAACG 59.031 47.619 15.93 0.00 0.00 4.10
132 133 1.598132 TCAACGCGAAAAATCCAACGA 59.402 42.857 15.93 0.00 0.00 3.85
133 134 2.224549 TCAACGCGAAAAATCCAACGAT 59.775 40.909 15.93 0.00 0.00 3.73
134 135 2.241259 ACGCGAAAAATCCAACGATG 57.759 45.000 15.93 0.00 0.00 3.84
135 136 1.801771 ACGCGAAAAATCCAACGATGA 59.198 42.857 15.93 0.00 0.00 2.92
136 137 2.224549 ACGCGAAAAATCCAACGATGAA 59.775 40.909 15.93 0.00 0.00 2.57
137 138 3.230355 CGCGAAAAATCCAACGATGAAA 58.770 40.909 0.00 0.00 0.00 2.69
138 139 3.666334 CGCGAAAAATCCAACGATGAAAA 59.334 39.130 0.00 0.00 0.00 2.29
139 140 4.431086 CGCGAAAAATCCAACGATGAAAAC 60.431 41.667 0.00 0.00 0.00 2.43
140 141 4.442733 GCGAAAAATCCAACGATGAAAACA 59.557 37.500 0.00 0.00 0.00 2.83
141 142 5.387342 GCGAAAAATCCAACGATGAAAACAG 60.387 40.000 0.00 0.00 0.00 3.16
142 143 5.685511 CGAAAAATCCAACGATGAAAACAGT 59.314 36.000 0.00 0.00 0.00 3.55
143 144 6.198216 CGAAAAATCCAACGATGAAAACAGTT 59.802 34.615 0.00 0.00 0.00 3.16
144 145 7.463469 AAAAATCCAACGATGAAAACAGTTC 57.537 32.000 0.00 0.00 0.00 3.01
145 146 3.870723 TCCAACGATGAAAACAGTTCG 57.129 42.857 0.00 0.00 37.60 3.95
146 147 2.546368 TCCAACGATGAAAACAGTTCGG 59.454 45.455 0.00 0.00 35.98 4.30
147 148 2.350388 CCAACGATGAAAACAGTTCGGG 60.350 50.000 0.00 0.00 35.98 5.14
148 149 2.536761 ACGATGAAAACAGTTCGGGA 57.463 45.000 0.00 0.00 35.98 5.14
149 150 3.053831 ACGATGAAAACAGTTCGGGAT 57.946 42.857 0.00 0.00 35.98 3.85
150 151 3.408634 ACGATGAAAACAGTTCGGGATT 58.591 40.909 0.00 0.00 35.98 3.01
151 152 3.818773 ACGATGAAAACAGTTCGGGATTT 59.181 39.130 0.00 0.00 35.98 2.17
152 153 4.158384 CGATGAAAACAGTTCGGGATTTG 58.842 43.478 0.00 0.00 0.00 2.32
153 154 4.485163 GATGAAAACAGTTCGGGATTTGG 58.515 43.478 0.00 0.00 0.00 3.28
154 155 3.556999 TGAAAACAGTTCGGGATTTGGA 58.443 40.909 0.00 0.00 0.00 3.53
155 156 3.954904 TGAAAACAGTTCGGGATTTGGAA 59.045 39.130 0.00 0.00 0.00 3.53
156 157 4.402793 TGAAAACAGTTCGGGATTTGGAAA 59.597 37.500 0.00 0.00 0.00 3.13
157 158 4.316205 AAACAGTTCGGGATTTGGAAAC 57.684 40.909 0.00 0.00 0.00 2.78
158 159 2.938838 ACAGTTCGGGATTTGGAAACA 58.061 42.857 0.00 0.00 39.83 2.83
159 160 2.621526 ACAGTTCGGGATTTGGAAACAC 59.378 45.455 0.00 0.00 42.67 3.32
160 161 1.877443 AGTTCGGGATTTGGAAACACG 59.123 47.619 0.00 0.00 42.67 4.49
161 162 1.068816 GTTCGGGATTTGGAAACACGG 60.069 52.381 0.00 0.00 42.67 4.94
162 163 0.108963 TCGGGATTTGGAAACACGGT 59.891 50.000 0.00 0.00 42.67 4.83
163 164 0.955905 CGGGATTTGGAAACACGGTT 59.044 50.000 0.00 0.00 42.67 4.44
164 165 1.338655 CGGGATTTGGAAACACGGTTT 59.661 47.619 2.23 2.23 42.67 3.27
165 166 2.553172 CGGGATTTGGAAACACGGTTTA 59.447 45.455 2.58 0.00 42.67 2.01
166 167 3.004524 CGGGATTTGGAAACACGGTTTAA 59.995 43.478 2.58 0.00 42.67 1.52
167 168 4.552355 GGGATTTGGAAACACGGTTTAAG 58.448 43.478 2.58 0.00 42.67 1.85
168 169 4.278919 GGGATTTGGAAACACGGTTTAAGA 59.721 41.667 2.58 0.00 42.67 2.10
169 170 5.458015 GGATTTGGAAACACGGTTTAAGAG 58.542 41.667 2.58 0.00 42.67 2.85
170 171 5.239963 GGATTTGGAAACACGGTTTAAGAGA 59.760 40.000 2.58 0.00 42.67 3.10
171 172 6.072119 GGATTTGGAAACACGGTTTAAGAGAT 60.072 38.462 2.58 0.00 42.67 2.75
172 173 7.120138 GGATTTGGAAACACGGTTTAAGAGATA 59.880 37.037 2.58 0.00 42.67 1.98
173 174 7.804843 TTTGGAAACACGGTTTAAGAGATAA 57.195 32.000 2.58 0.00 42.67 1.75
174 175 7.804843 TTGGAAACACGGTTTAAGAGATAAA 57.195 32.000 2.58 0.00 42.67 1.40
175 176 7.804843 TGGAAACACGGTTTAAGAGATAAAA 57.195 32.000 2.58 0.00 33.05 1.52
176 177 8.398878 TGGAAACACGGTTTAAGAGATAAAAT 57.601 30.769 2.58 0.00 33.05 1.82
177 178 9.504708 TGGAAACACGGTTTAAGAGATAAAATA 57.495 29.630 2.58 0.00 33.05 1.40
225 226 8.891367 AAAAAGAAAAACTCTCAAGTTACGAC 57.109 30.769 0.00 0.00 45.07 4.34
226 227 7.605410 AAAGAAAAACTCTCAAGTTACGACA 57.395 32.000 0.00 0.00 45.07 4.35
227 228 7.605410 AAGAAAAACTCTCAAGTTACGACAA 57.395 32.000 0.00 0.00 45.07 3.18
228 229 7.235430 AGAAAAACTCTCAAGTTACGACAAG 57.765 36.000 0.00 0.00 45.07 3.16
229 230 6.817140 AGAAAAACTCTCAAGTTACGACAAGT 59.183 34.615 0.00 0.00 45.07 3.16
230 231 5.968387 AAACTCTCAAGTTACGACAAGTG 57.032 39.130 0.00 0.00 45.07 3.16
231 232 4.913335 ACTCTCAAGTTACGACAAGTGA 57.087 40.909 0.00 0.00 28.74 3.41
232 233 4.608951 ACTCTCAAGTTACGACAAGTGAC 58.391 43.478 0.00 0.00 39.38 3.67
233 234 3.624900 TCTCAAGTTACGACAAGTGACG 58.375 45.455 1.71 1.71 43.29 4.35
234 235 3.065786 TCTCAAGTTACGACAAGTGACGT 59.934 43.478 12.92 12.92 46.64 4.34
235 236 3.110358 TCAAGTTACGACAAGTGACGTG 58.890 45.455 16.92 0.00 45.27 4.49
236 237 1.484356 AGTTACGACAAGTGACGTGC 58.516 50.000 16.92 10.50 44.93 5.34
237 238 1.066605 AGTTACGACAAGTGACGTGCT 59.933 47.619 16.92 12.20 44.93 4.40
238 239 1.450905 GTTACGACAAGTGACGTGCTC 59.549 52.381 16.92 5.60 44.93 4.26
239 240 0.385098 TACGACAAGTGACGTGCTCG 60.385 55.000 16.92 16.45 44.93 5.03
250 251 3.786809 CGTGCTCGTAACCTGAGAA 57.213 52.632 0.00 0.00 35.43 2.87
251 252 2.279582 CGTGCTCGTAACCTGAGAAT 57.720 50.000 0.00 0.00 35.43 2.40
252 253 1.920574 CGTGCTCGTAACCTGAGAATG 59.079 52.381 0.00 0.00 35.43 2.67
253 254 2.671351 CGTGCTCGTAACCTGAGAATGT 60.671 50.000 0.00 0.00 35.43 2.71
254 255 3.427098 CGTGCTCGTAACCTGAGAATGTA 60.427 47.826 0.00 0.00 35.43 2.29
255 256 4.106197 GTGCTCGTAACCTGAGAATGTAG 58.894 47.826 0.00 0.00 35.43 2.74
256 257 3.130516 TGCTCGTAACCTGAGAATGTAGG 59.869 47.826 0.00 0.00 40.01 3.18
257 258 3.380637 GCTCGTAACCTGAGAATGTAGGA 59.619 47.826 0.00 0.00 37.52 2.94
258 259 4.498345 GCTCGTAACCTGAGAATGTAGGAG 60.498 50.000 0.00 0.00 37.52 3.69
259 260 4.597004 TCGTAACCTGAGAATGTAGGAGT 58.403 43.478 0.00 0.00 37.52 3.85
260 261 4.398358 TCGTAACCTGAGAATGTAGGAGTG 59.602 45.833 0.00 0.00 37.52 3.51
261 262 4.398358 CGTAACCTGAGAATGTAGGAGTGA 59.602 45.833 0.00 0.00 37.52 3.41
262 263 5.105877 CGTAACCTGAGAATGTAGGAGTGAA 60.106 44.000 0.00 0.00 37.52 3.18
263 264 4.810191 ACCTGAGAATGTAGGAGTGAAC 57.190 45.455 0.00 0.00 37.52 3.18
264 265 4.421131 ACCTGAGAATGTAGGAGTGAACT 58.579 43.478 0.00 0.00 37.52 3.01
265 266 4.841246 ACCTGAGAATGTAGGAGTGAACTT 59.159 41.667 0.00 0.00 37.52 2.66
266 267 5.308237 ACCTGAGAATGTAGGAGTGAACTTT 59.692 40.000 0.00 0.00 37.52 2.66
267 268 5.641209 CCTGAGAATGTAGGAGTGAACTTTG 59.359 44.000 0.00 0.00 36.11 2.77
268 269 4.997395 TGAGAATGTAGGAGTGAACTTTGC 59.003 41.667 0.00 0.00 0.00 3.68
269 270 4.973168 AGAATGTAGGAGTGAACTTTGCA 58.027 39.130 0.00 0.00 0.00 4.08
270 271 5.376625 AGAATGTAGGAGTGAACTTTGCAA 58.623 37.500 0.00 0.00 0.00 4.08
271 272 5.471456 AGAATGTAGGAGTGAACTTTGCAAG 59.529 40.000 0.00 0.00 0.00 4.01
272 273 3.476552 TGTAGGAGTGAACTTTGCAAGG 58.523 45.455 7.07 7.07 0.00 3.61
273 274 1.986882 AGGAGTGAACTTTGCAAGGG 58.013 50.000 13.65 6.72 0.00 3.95
274 275 0.961753 GGAGTGAACTTTGCAAGGGG 59.038 55.000 13.65 4.24 0.00 4.79
275 276 1.692411 GAGTGAACTTTGCAAGGGGT 58.308 50.000 13.65 2.51 0.00 4.95
276 277 2.488347 GGAGTGAACTTTGCAAGGGGTA 60.488 50.000 13.65 0.00 0.00 3.69
277 278 2.552743 GAGTGAACTTTGCAAGGGGTAC 59.447 50.000 13.65 8.13 0.00 3.34
296 297 4.809426 GGTACCCTGTAATCAGTGATTTCG 59.191 45.833 22.90 13.42 39.82 3.46
297 298 3.873910 ACCCTGTAATCAGTGATTTCGG 58.126 45.455 22.90 20.86 39.82 4.30
298 299 2.614057 CCCTGTAATCAGTGATTTCGGC 59.386 50.000 22.90 11.70 39.82 5.54
299 300 3.535561 CCTGTAATCAGTGATTTCGGCT 58.464 45.455 22.90 0.75 39.82 5.52
300 301 4.442893 CCCTGTAATCAGTGATTTCGGCTA 60.443 45.833 22.90 1.66 39.82 3.93
301 302 5.116180 CCTGTAATCAGTGATTTCGGCTAA 58.884 41.667 22.90 0.92 39.82 3.09
302 303 5.760253 CCTGTAATCAGTGATTTCGGCTAAT 59.240 40.000 22.90 0.00 39.82 1.73
303 304 6.929049 CCTGTAATCAGTGATTTCGGCTAATA 59.071 38.462 22.90 0.00 39.82 0.98
304 305 7.604164 CCTGTAATCAGTGATTTCGGCTAATAT 59.396 37.037 22.90 0.00 39.82 1.28
305 306 9.639601 CTGTAATCAGTGATTTCGGCTAATATA 57.360 33.333 22.90 0.00 36.97 0.86
306 307 9.990360 TGTAATCAGTGATTTCGGCTAATATAA 57.010 29.630 22.90 0.00 33.95 0.98
309 310 7.946655 TCAGTGATTTCGGCTAATATAAGTG 57.053 36.000 0.00 0.00 0.00 3.16
310 311 7.497595 TCAGTGATTTCGGCTAATATAAGTGT 58.502 34.615 0.00 0.00 0.00 3.55
311 312 7.438160 TCAGTGATTTCGGCTAATATAAGTGTG 59.562 37.037 0.00 0.00 0.00 3.82
312 313 7.224753 CAGTGATTTCGGCTAATATAAGTGTGT 59.775 37.037 0.00 0.00 0.00 3.72
313 314 8.418662 AGTGATTTCGGCTAATATAAGTGTGTA 58.581 33.333 0.00 0.00 0.00 2.90
314 315 9.204570 GTGATTTCGGCTAATATAAGTGTGTAT 57.795 33.333 0.00 0.00 0.00 2.29
329 330 7.972832 AAGTGTGTATAAATTTCGTCCTTGA 57.027 32.000 0.00 0.00 0.00 3.02
330 331 8.561738 AAGTGTGTATAAATTTCGTCCTTGAT 57.438 30.769 0.00 0.00 0.00 2.57
331 332 7.974675 AGTGTGTATAAATTTCGTCCTTGATG 58.025 34.615 0.00 0.00 0.00 3.07
332 333 7.822334 AGTGTGTATAAATTTCGTCCTTGATGA 59.178 33.333 0.00 0.00 0.00 2.92
333 334 8.447833 GTGTGTATAAATTTCGTCCTTGATGAA 58.552 33.333 0.00 0.00 36.02 2.57
334 335 9.173021 TGTGTATAAATTTCGTCCTTGATGAAT 57.827 29.630 0.00 0.00 37.41 2.57
335 336 9.438291 GTGTATAAATTTCGTCCTTGATGAATG 57.562 33.333 0.00 0.00 37.41 2.67
336 337 9.389755 TGTATAAATTTCGTCCTTGATGAATGA 57.610 29.630 0.00 0.00 37.41 2.57
339 340 4.661993 TTTCGTCCTTGATGAATGAACG 57.338 40.909 0.00 0.00 37.41 3.95
340 341 2.616960 TCGTCCTTGATGAATGAACGG 58.383 47.619 0.00 0.00 0.00 4.44
341 342 2.028476 TCGTCCTTGATGAATGAACGGT 60.028 45.455 0.00 0.00 0.00 4.83
342 343 2.094258 CGTCCTTGATGAATGAACGGTG 59.906 50.000 0.00 0.00 0.00 4.94
343 344 2.420022 GTCCTTGATGAATGAACGGTGG 59.580 50.000 0.00 0.00 0.00 4.61
344 345 2.039746 TCCTTGATGAATGAACGGTGGT 59.960 45.455 0.00 0.00 0.00 4.16
345 346 3.262151 TCCTTGATGAATGAACGGTGGTA 59.738 43.478 0.00 0.00 0.00 3.25
346 347 4.080582 TCCTTGATGAATGAACGGTGGTAT 60.081 41.667 0.00 0.00 0.00 2.73
347 348 5.129650 TCCTTGATGAATGAACGGTGGTATA 59.870 40.000 0.00 0.00 0.00 1.47
348 349 5.466728 CCTTGATGAATGAACGGTGGTATAG 59.533 44.000 0.00 0.00 0.00 1.31
349 350 5.862678 TGATGAATGAACGGTGGTATAGA 57.137 39.130 0.00 0.00 0.00 1.98
350 351 5.842907 TGATGAATGAACGGTGGTATAGAG 58.157 41.667 0.00 0.00 0.00 2.43
351 352 4.054780 TGAATGAACGGTGGTATAGAGC 57.945 45.455 0.00 0.00 0.00 4.09
352 353 3.181469 TGAATGAACGGTGGTATAGAGCC 60.181 47.826 0.00 0.00 0.00 4.70
353 354 1.117150 TGAACGGTGGTATAGAGCCC 58.883 55.000 0.00 0.00 0.00 5.19
354 355 1.117150 GAACGGTGGTATAGAGCCCA 58.883 55.000 0.00 0.00 0.00 5.36
359 360 0.106894 GTGGTATAGAGCCCACCAGC 59.893 60.000 0.00 0.00 44.37 4.85
360 361 1.054406 TGGTATAGAGCCCACCAGCC 61.054 60.000 0.00 0.00 37.42 4.85
361 362 1.755384 GTATAGAGCCCACCAGCCC 59.245 63.158 0.00 0.00 0.00 5.19
362 363 0.764752 GTATAGAGCCCACCAGCCCT 60.765 60.000 0.00 0.00 0.00 5.19
363 364 0.030092 TATAGAGCCCACCAGCCCTT 60.030 55.000 0.00 0.00 0.00 3.95
364 365 0.030092 ATAGAGCCCACCAGCCCTTA 60.030 55.000 0.00 0.00 0.00 2.69
365 366 0.981277 TAGAGCCCACCAGCCCTTAC 60.981 60.000 0.00 0.00 0.00 2.34
366 367 3.339093 AGCCCACCAGCCCTTACC 61.339 66.667 0.00 0.00 0.00 2.85
367 368 3.657350 GCCCACCAGCCCTTACCA 61.657 66.667 0.00 0.00 0.00 3.25
368 369 3.176297 CCCACCAGCCCTTACCAA 58.824 61.111 0.00 0.00 0.00 3.67
369 370 1.462928 CCCACCAGCCCTTACCAAA 59.537 57.895 0.00 0.00 0.00 3.28
370 371 0.178947 CCCACCAGCCCTTACCAAAA 60.179 55.000 0.00 0.00 0.00 2.44
371 372 1.552254 CCCACCAGCCCTTACCAAAAT 60.552 52.381 0.00 0.00 0.00 1.82
372 373 1.824852 CCACCAGCCCTTACCAAAATC 59.175 52.381 0.00 0.00 0.00 2.17
373 374 2.524306 CACCAGCCCTTACCAAAATCA 58.476 47.619 0.00 0.00 0.00 2.57
374 375 2.493278 CACCAGCCCTTACCAAAATCAG 59.507 50.000 0.00 0.00 0.00 2.90
375 376 2.102578 CCAGCCCTTACCAAAATCAGG 58.897 52.381 0.00 0.00 0.00 3.86
376 377 1.478105 CAGCCCTTACCAAAATCAGGC 59.522 52.381 0.00 0.00 39.25 4.85
377 378 0.824109 GCCCTTACCAAAATCAGGCC 59.176 55.000 0.00 0.00 32.68 5.19
378 379 1.102978 CCCTTACCAAAATCAGGCCG 58.897 55.000 0.00 0.00 0.00 6.13
379 380 1.340600 CCCTTACCAAAATCAGGCCGA 60.341 52.381 0.00 0.00 0.00 5.54
380 381 2.442413 CCTTACCAAAATCAGGCCGAA 58.558 47.619 0.00 0.00 0.00 4.30
381 382 2.823154 CCTTACCAAAATCAGGCCGAAA 59.177 45.455 0.00 0.00 0.00 3.46
382 383 3.447229 CCTTACCAAAATCAGGCCGAAAT 59.553 43.478 0.00 0.00 0.00 2.17
383 384 4.423732 CTTACCAAAATCAGGCCGAAATG 58.576 43.478 0.00 0.00 0.00 2.32
384 385 1.550072 ACCAAAATCAGGCCGAAATGG 59.450 47.619 17.07 17.07 42.50 3.16
385 386 1.134729 CCAAAATCAGGCCGAAATGGG 60.135 52.381 0.00 0.00 38.63 4.00
393 394 4.617875 CCGAAATGGGCTTCTCGT 57.382 55.556 0.00 0.00 0.00 4.18
394 395 2.089854 CCGAAATGGGCTTCTCGTG 58.910 57.895 0.00 0.00 0.00 4.35
395 396 1.369091 CCGAAATGGGCTTCTCGTGG 61.369 60.000 0.00 0.00 0.00 4.94
396 397 1.369091 CGAAATGGGCTTCTCGTGGG 61.369 60.000 0.00 0.00 0.00 4.61
397 398 1.657751 GAAATGGGCTTCTCGTGGGC 61.658 60.000 0.00 0.00 0.00 5.36
398 399 3.645268 AATGGGCTTCTCGTGGGCC 62.645 63.158 0.00 0.00 46.56 5.80
401 402 4.115199 GGCTTCTCGTGGGCCCAT 62.115 66.667 31.45 0.00 39.96 4.00
402 403 2.742116 GGCTTCTCGTGGGCCCATA 61.742 63.158 31.45 18.88 39.96 2.74
403 404 1.451936 GCTTCTCGTGGGCCCATAT 59.548 57.895 31.45 0.00 0.00 1.78
404 405 0.685097 GCTTCTCGTGGGCCCATATA 59.315 55.000 31.45 15.67 0.00 0.86
405 406 1.338200 GCTTCTCGTGGGCCCATATAG 60.338 57.143 31.45 24.31 0.00 1.31
406 407 1.276421 CTTCTCGTGGGCCCATATAGG 59.724 57.143 31.45 16.49 37.03 2.57
407 408 0.190069 TCTCGTGGGCCCATATAGGT 59.810 55.000 31.45 0.00 34.66 3.08
408 409 1.056660 CTCGTGGGCCCATATAGGTT 58.943 55.000 31.45 0.00 34.66 3.50
409 410 1.002087 CTCGTGGGCCCATATAGGTTC 59.998 57.143 31.45 11.63 34.66 3.62
410 411 0.036306 CGTGGGCCCATATAGGTTCC 59.964 60.000 31.45 10.79 34.66 3.62
411 412 1.145571 GTGGGCCCATATAGGTTCCA 58.854 55.000 31.45 0.00 35.86 3.53
412 413 1.073923 GTGGGCCCATATAGGTTCCAG 59.926 57.143 31.45 0.00 37.95 3.86
413 414 0.038310 GGGCCCATATAGGTTCCAGC 59.962 60.000 19.95 0.00 34.66 4.85
414 415 0.038310 GGCCCATATAGGTTCCAGCC 59.962 60.000 0.00 0.00 33.44 4.85
415 416 0.321653 GCCCATATAGGTTCCAGCCG 60.322 60.000 0.00 0.00 34.66 5.52
416 417 1.348064 CCCATATAGGTTCCAGCCGA 58.652 55.000 0.00 0.00 34.66 5.54
417 418 1.002087 CCCATATAGGTTCCAGCCGAC 59.998 57.143 0.00 0.00 34.66 4.79
418 419 1.971357 CCATATAGGTTCCAGCCGACT 59.029 52.381 0.00 0.00 0.00 4.18
419 420 3.162666 CCATATAGGTTCCAGCCGACTA 58.837 50.000 0.00 0.00 0.00 2.59
420 421 3.576982 CCATATAGGTTCCAGCCGACTAA 59.423 47.826 0.00 0.00 0.00 2.24
421 422 4.039973 CCATATAGGTTCCAGCCGACTAAA 59.960 45.833 0.00 0.00 0.00 1.85
422 423 5.454187 CCATATAGGTTCCAGCCGACTAAAA 60.454 44.000 0.00 0.00 0.00 1.52
423 424 2.943036 AGGTTCCAGCCGACTAAAAA 57.057 45.000 0.00 0.00 0.00 1.94
446 447 2.840974 CCGAAATCACGGCTCAACT 58.159 52.632 0.00 0.00 46.20 3.16
447 448 0.443869 CCGAAATCACGGCTCAACTG 59.556 55.000 0.00 0.00 46.20 3.16
448 449 1.148310 CGAAATCACGGCTCAACTGT 58.852 50.000 0.00 0.00 38.94 3.55
449 450 1.531149 CGAAATCACGGCTCAACTGTT 59.469 47.619 0.00 0.00 34.87 3.16
450 451 2.411547 CGAAATCACGGCTCAACTGTTC 60.412 50.000 0.00 0.00 34.87 3.18
451 452 2.550830 AATCACGGCTCAACTGTTCT 57.449 45.000 0.00 0.00 34.87 3.01
452 453 1.800805 ATCACGGCTCAACTGTTCTG 58.199 50.000 0.00 0.00 34.87 3.02
453 454 0.750249 TCACGGCTCAACTGTTCTGA 59.250 50.000 0.00 0.00 34.87 3.27
454 455 1.344438 TCACGGCTCAACTGTTCTGAT 59.656 47.619 0.00 0.00 34.87 2.90
455 456 2.146342 CACGGCTCAACTGTTCTGATT 58.854 47.619 0.00 0.00 34.87 2.57
456 457 2.549754 CACGGCTCAACTGTTCTGATTT 59.450 45.455 0.00 0.00 34.87 2.17
457 458 3.003689 CACGGCTCAACTGTTCTGATTTT 59.996 43.478 0.00 0.00 34.87 1.82
458 459 3.251004 ACGGCTCAACTGTTCTGATTTTC 59.749 43.478 0.00 0.00 32.29 2.29
459 460 3.365364 CGGCTCAACTGTTCTGATTTTCC 60.365 47.826 0.00 0.00 0.00 3.13
460 461 3.057245 GGCTCAACTGTTCTGATTTTCCC 60.057 47.826 0.00 0.00 0.00 3.97
461 462 3.569701 GCTCAACTGTTCTGATTTTCCCA 59.430 43.478 0.00 0.00 0.00 4.37
462 463 4.219288 GCTCAACTGTTCTGATTTTCCCAT 59.781 41.667 0.00 0.00 0.00 4.00
463 464 5.279156 GCTCAACTGTTCTGATTTTCCCATT 60.279 40.000 0.00 0.00 0.00 3.16
464 465 6.071952 GCTCAACTGTTCTGATTTTCCCATTA 60.072 38.462 0.00 0.00 0.00 1.90
465 466 7.363268 GCTCAACTGTTCTGATTTTCCCATTAT 60.363 37.037 0.00 0.00 0.00 1.28
466 467 9.177608 CTCAACTGTTCTGATTTTCCCATTATA 57.822 33.333 0.00 0.00 0.00 0.98
467 468 8.956426 TCAACTGTTCTGATTTTCCCATTATAC 58.044 33.333 0.00 0.00 0.00 1.47
468 469 8.739039 CAACTGTTCTGATTTTCCCATTATACA 58.261 33.333 0.00 0.00 0.00 2.29
469 470 8.877864 ACTGTTCTGATTTTCCCATTATACAA 57.122 30.769 0.00 0.00 0.00 2.41
470 471 9.308000 ACTGTTCTGATTTTCCCATTATACAAA 57.692 29.630 0.00 0.00 0.00 2.83
497 498 9.906660 AAAAACGCTATGATTTTCTGTGAATAA 57.093 25.926 0.00 0.00 27.37 1.40
501 502 8.774586 ACGCTATGATTTTCTGTGAATAATACC 58.225 33.333 0.00 0.00 0.00 2.73
502 503 7.952101 CGCTATGATTTTCTGTGAATAATACCG 59.048 37.037 0.00 0.00 0.00 4.02
503 504 8.230486 GCTATGATTTTCTGTGAATAATACCGG 58.770 37.037 0.00 0.00 0.00 5.28
504 505 9.489084 CTATGATTTTCTGTGAATAATACCGGA 57.511 33.333 9.46 0.00 0.00 5.14
505 506 8.924511 ATGATTTTCTGTGAATAATACCGGAT 57.075 30.769 9.46 0.00 0.00 4.18
506 507 8.746052 TGATTTTCTGTGAATAATACCGGATT 57.254 30.769 9.46 6.40 0.00 3.01
507 508 8.620416 TGATTTTCTGTGAATAATACCGGATTG 58.380 33.333 9.46 0.00 0.00 2.67
508 509 8.746052 ATTTTCTGTGAATAATACCGGATTGA 57.254 30.769 9.46 0.00 0.00 2.57
509 510 8.568676 TTTTCTGTGAATAATACCGGATTGAA 57.431 30.769 9.46 0.00 0.00 2.69
510 511 7.786178 TTCTGTGAATAATACCGGATTGAAG 57.214 36.000 9.46 0.00 0.00 3.02
511 512 5.758296 TCTGTGAATAATACCGGATTGAAGC 59.242 40.000 9.46 0.00 0.00 3.86
512 513 4.509970 TGTGAATAATACCGGATTGAAGCG 59.490 41.667 9.46 0.00 0.00 4.68
513 514 4.748102 GTGAATAATACCGGATTGAAGCGA 59.252 41.667 9.46 0.00 0.00 4.93
514 515 5.235616 GTGAATAATACCGGATTGAAGCGAA 59.764 40.000 9.46 0.00 0.00 4.70
515 516 5.995282 TGAATAATACCGGATTGAAGCGAAT 59.005 36.000 9.46 0.00 0.00 3.34
516 517 6.147164 TGAATAATACCGGATTGAAGCGAATC 59.853 38.462 9.46 0.00 0.00 2.52
517 518 2.971660 TACCGGATTGAAGCGAATCA 57.028 45.000 9.46 0.00 34.50 2.57
518 519 2.107950 ACCGGATTGAAGCGAATCAA 57.892 45.000 9.46 5.88 43.03 2.57
525 526 4.978083 ATTGAAGCGAATCAATTCAGCT 57.022 36.364 9.52 12.88 45.39 4.24
526 527 3.752412 TGAAGCGAATCAATTCAGCTG 57.248 42.857 7.63 7.63 41.83 4.24
527 528 3.337358 TGAAGCGAATCAATTCAGCTGA 58.663 40.909 13.74 13.74 41.83 4.26
528 529 3.943381 TGAAGCGAATCAATTCAGCTGAT 59.057 39.130 19.04 0.00 41.83 2.90
529 530 5.118286 TGAAGCGAATCAATTCAGCTGATA 58.882 37.500 19.04 9.12 41.83 2.15
530 531 5.761726 TGAAGCGAATCAATTCAGCTGATAT 59.238 36.000 19.04 11.10 41.83 1.63
531 532 6.930722 TGAAGCGAATCAATTCAGCTGATATA 59.069 34.615 19.04 2.52 41.83 0.86
532 533 7.442062 TGAAGCGAATCAATTCAGCTGATATAA 59.558 33.333 19.04 2.08 41.83 0.98
533 534 7.734924 AGCGAATCAATTCAGCTGATATAAA 57.265 32.000 19.04 1.63 41.45 1.40
591 602 0.107165 GCAATACTCCCCACCCACTC 60.107 60.000 0.00 0.00 0.00 3.51
607 618 1.075600 CTCTGTCCCTCTCCTCCCC 60.076 68.421 0.00 0.00 0.00 4.81
608 619 1.862138 TCTGTCCCTCTCCTCCCCA 60.862 63.158 0.00 0.00 0.00 4.96
1707 1727 0.594110 TTCCGAAAATTGGTGGTCGC 59.406 50.000 0.00 0.00 32.21 5.19
1724 1744 1.134699 TCGCCTCCTAATTCAGTGCTG 60.135 52.381 0.00 0.00 0.00 4.41
1729 1749 4.184629 CCTCCTAATTCAGTGCTGTGTAC 58.815 47.826 0.00 0.00 0.00 2.90
1755 1776 5.947228 TTATGCCTCTTGTTTCTGAAGTG 57.053 39.130 0.00 0.00 0.00 3.16
1772 1793 8.231692 TCTGAAGTGGTGACAAATTTTTATCA 57.768 30.769 0.00 0.00 46.06 2.15
1803 1824 8.994429 TTCTCTGTTTTGTTCATTTTGCTTAA 57.006 26.923 0.00 0.00 0.00 1.85
1804 1825 9.598517 TTCTCTGTTTTGTTCATTTTGCTTAAT 57.401 25.926 0.00 0.00 0.00 1.40
1853 1883 3.572255 TCACCTTAACTGCCACCAATTTC 59.428 43.478 0.00 0.00 0.00 2.17
1943 1980 5.632244 ATTTTGGCAAGCAAAATGAATCC 57.368 34.783 10.25 0.00 39.77 3.01
1947 1984 4.819769 TGGCAAGCAAAATGAATCCTTAC 58.180 39.130 0.00 0.00 0.00 2.34
1964 2001 7.660030 ATCCTTACCCCACAATTATTTTCTG 57.340 36.000 0.00 0.00 0.00 3.02
1995 2032 7.434492 AGGTAGACGGATGTAGTTCAATATTG 58.566 38.462 9.29 9.29 0.00 1.90
1997 2034 5.057149 AGACGGATGTAGTTCAATATTGCC 58.943 41.667 10.76 3.93 0.00 4.52
2238 2361 2.301870 CTGGGCTTTGGTGAGTACAGTA 59.698 50.000 0.00 0.00 0.00 2.74
2256 2379 8.150945 AGTACAGTAACCATCATCCATCATTAC 58.849 37.037 0.00 0.00 0.00 1.89
2259 2382 6.367149 CAGTAACCATCATCCATCATTACTCG 59.633 42.308 0.00 0.00 30.88 4.18
2342 2467 6.293626 CCAACTGGTACTCTTGACTGATTTTG 60.294 42.308 0.00 0.00 0.00 2.44
2371 2497 3.308053 CACGGTGACTTGCATGATCTTAG 59.692 47.826 0.74 0.00 0.00 2.18
2380 2506 7.609146 TGACTTGCATGATCTTAGAAACTGAAT 59.391 33.333 6.60 0.00 0.00 2.57
2494 2643 8.877779 CAATCTTTCATTCTCGAAATAGTGAGT 58.122 33.333 0.00 0.00 32.20 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.661020 AAAACCGAGTTGGAAGCACG 59.339 50.000 2.42 0.00 42.00 5.34
2 3 3.751698 AGATAAAACCGAGTTGGAAGCAC 59.248 43.478 2.42 0.00 42.00 4.40
3 4 4.015872 AGATAAAACCGAGTTGGAAGCA 57.984 40.909 2.42 0.00 42.00 3.91
4 5 4.215613 ACAAGATAAAACCGAGTTGGAAGC 59.784 41.667 2.42 0.00 42.00 3.86
5 6 5.701290 AGACAAGATAAAACCGAGTTGGAAG 59.299 40.000 2.42 0.00 42.00 3.46
6 7 5.617252 AGACAAGATAAAACCGAGTTGGAA 58.383 37.500 2.42 0.00 42.00 3.53
7 8 5.223449 AGACAAGATAAAACCGAGTTGGA 57.777 39.130 2.42 0.00 42.00 3.53
8 9 5.238650 ACAAGACAAGATAAAACCGAGTTGG 59.761 40.000 0.00 0.00 46.41 3.77
9 10 6.300354 ACAAGACAAGATAAAACCGAGTTG 57.700 37.500 0.00 0.00 0.00 3.16
10 11 6.937436 AACAAGACAAGATAAAACCGAGTT 57.063 33.333 0.00 0.00 0.00 3.01
11 12 6.937436 AAACAAGACAAGATAAAACCGAGT 57.063 33.333 0.00 0.00 0.00 4.18
12 13 7.378728 GGAAAAACAAGACAAGATAAAACCGAG 59.621 37.037 0.00 0.00 0.00 4.63
13 14 7.197703 GGAAAAACAAGACAAGATAAAACCGA 58.802 34.615 0.00 0.00 0.00 4.69
14 15 6.141685 CGGAAAAACAAGACAAGATAAAACCG 59.858 38.462 0.00 0.00 0.00 4.44
15 16 6.976349 ACGGAAAAACAAGACAAGATAAAACC 59.024 34.615 0.00 0.00 0.00 3.27
16 17 7.980742 ACGGAAAAACAAGACAAGATAAAAC 57.019 32.000 0.00 0.00 0.00 2.43
67 68 8.785329 TGCTGATAGGTTTTGAAAAACTTTTT 57.215 26.923 14.01 0.00 45.70 1.94
68 69 8.962884 ATGCTGATAGGTTTTGAAAAACTTTT 57.037 26.923 14.01 2.12 45.70 2.27
69 70 8.829612 CAATGCTGATAGGTTTTGAAAAACTTT 58.170 29.630 14.01 5.92 45.70 2.66
70 71 8.203485 TCAATGCTGATAGGTTTTGAAAAACTT 58.797 29.630 14.01 12.16 45.70 2.66
71 72 7.725251 TCAATGCTGATAGGTTTTGAAAAACT 58.275 30.769 13.29 13.29 45.70 2.66
72 73 7.945033 TCAATGCTGATAGGTTTTGAAAAAC 57.055 32.000 9.66 9.66 45.70 2.43
73 74 8.587608 AGATCAATGCTGATAGGTTTTGAAAAA 58.412 29.630 0.00 0.00 42.60 1.94
74 75 8.125978 AGATCAATGCTGATAGGTTTTGAAAA 57.874 30.769 0.00 0.00 42.60 2.29
75 76 7.707624 AGATCAATGCTGATAGGTTTTGAAA 57.292 32.000 0.00 0.00 42.60 2.69
76 77 8.049117 ACTAGATCAATGCTGATAGGTTTTGAA 58.951 33.333 0.00 0.00 42.60 2.69
77 78 7.568349 ACTAGATCAATGCTGATAGGTTTTGA 58.432 34.615 0.00 0.00 42.60 2.69
78 79 7.798596 ACTAGATCAATGCTGATAGGTTTTG 57.201 36.000 0.00 0.00 42.60 2.44
79 80 8.270744 AGAACTAGATCAATGCTGATAGGTTTT 58.729 33.333 0.00 0.00 42.60 2.43
80 81 7.800092 AGAACTAGATCAATGCTGATAGGTTT 58.200 34.615 0.00 0.00 42.60 3.27
81 82 7.372260 AGAACTAGATCAATGCTGATAGGTT 57.628 36.000 0.00 0.00 42.60 3.50
82 83 6.992664 AGAACTAGATCAATGCTGATAGGT 57.007 37.500 0.00 0.00 42.60 3.08
83 84 9.770097 TTTTAGAACTAGATCAATGCTGATAGG 57.230 33.333 0.00 0.00 42.60 2.57
87 88 9.539825 GAGATTTTAGAACTAGATCAATGCTGA 57.460 33.333 0.00 0.00 35.56 4.26
88 89 9.322773 TGAGATTTTAGAACTAGATCAATGCTG 57.677 33.333 0.00 0.00 0.00 4.41
89 90 9.896645 TTGAGATTTTAGAACTAGATCAATGCT 57.103 29.630 0.00 0.00 0.00 3.79
90 91 9.928236 GTTGAGATTTTAGAACTAGATCAATGC 57.072 33.333 0.00 0.00 0.00 3.56
92 93 8.821894 GCGTTGAGATTTTAGAACTAGATCAAT 58.178 33.333 0.00 0.00 0.00 2.57
93 94 7.009265 CGCGTTGAGATTTTAGAACTAGATCAA 59.991 37.037 0.00 0.00 0.00 2.57
94 95 6.472486 CGCGTTGAGATTTTAGAACTAGATCA 59.528 38.462 0.00 0.00 0.00 2.92
95 96 6.691818 TCGCGTTGAGATTTTAGAACTAGATC 59.308 38.462 5.77 0.00 0.00 2.75
96 97 6.561614 TCGCGTTGAGATTTTAGAACTAGAT 58.438 36.000 5.77 0.00 0.00 1.98
97 98 5.946298 TCGCGTTGAGATTTTAGAACTAGA 58.054 37.500 5.77 0.00 0.00 2.43
98 99 6.627690 TTCGCGTTGAGATTTTAGAACTAG 57.372 37.500 5.77 0.00 0.00 2.57
99 100 7.410800 TTTTCGCGTTGAGATTTTAGAACTA 57.589 32.000 5.77 0.00 0.00 2.24
100 101 5.917541 TTTCGCGTTGAGATTTTAGAACT 57.082 34.783 5.77 0.00 0.00 3.01
101 102 6.963017 TTTTTCGCGTTGAGATTTTAGAAC 57.037 33.333 5.77 0.00 0.00 3.01
102 103 6.799925 GGATTTTTCGCGTTGAGATTTTAGAA 59.200 34.615 5.77 0.00 0.00 2.10
103 104 6.072948 TGGATTTTTCGCGTTGAGATTTTAGA 60.073 34.615 5.77 0.00 0.00 2.10
104 105 6.083630 TGGATTTTTCGCGTTGAGATTTTAG 58.916 36.000 5.77 0.00 0.00 1.85
105 106 6.003234 TGGATTTTTCGCGTTGAGATTTTA 57.997 33.333 5.77 0.00 0.00 1.52
106 107 4.865776 TGGATTTTTCGCGTTGAGATTTT 58.134 34.783 5.77 0.00 0.00 1.82
107 108 4.497473 TGGATTTTTCGCGTTGAGATTT 57.503 36.364 5.77 0.00 0.00 2.17
108 109 4.226761 GTTGGATTTTTCGCGTTGAGATT 58.773 39.130 5.77 0.00 0.00 2.40
109 110 3.666902 CGTTGGATTTTTCGCGTTGAGAT 60.667 43.478 5.77 0.00 0.00 2.75
110 111 2.349060 CGTTGGATTTTTCGCGTTGAGA 60.349 45.455 5.77 0.00 0.00 3.27
111 112 1.969256 CGTTGGATTTTTCGCGTTGAG 59.031 47.619 5.77 0.00 0.00 3.02
112 113 1.598132 TCGTTGGATTTTTCGCGTTGA 59.402 42.857 5.77 0.00 0.00 3.18
113 114 2.025544 TCGTTGGATTTTTCGCGTTG 57.974 45.000 5.77 0.00 0.00 4.10
114 115 2.224549 TCATCGTTGGATTTTTCGCGTT 59.775 40.909 5.77 0.00 0.00 4.84
115 116 1.801771 TCATCGTTGGATTTTTCGCGT 59.198 42.857 5.77 0.00 0.00 6.01
116 117 2.519002 TCATCGTTGGATTTTTCGCG 57.481 45.000 0.00 0.00 0.00 5.87
117 118 4.442733 TGTTTTCATCGTTGGATTTTTCGC 59.557 37.500 0.00 0.00 0.00 4.70
118 119 5.685511 ACTGTTTTCATCGTTGGATTTTTCG 59.314 36.000 0.00 0.00 0.00 3.46
119 120 7.463469 AACTGTTTTCATCGTTGGATTTTTC 57.537 32.000 0.00 0.00 0.00 2.29
120 121 6.198216 CGAACTGTTTTCATCGTTGGATTTTT 59.802 34.615 0.00 0.00 30.58 1.94
121 122 5.685511 CGAACTGTTTTCATCGTTGGATTTT 59.314 36.000 0.00 0.00 30.58 1.82
122 123 5.212194 CGAACTGTTTTCATCGTTGGATTT 58.788 37.500 0.00 0.00 30.58 2.17
123 124 4.320202 CCGAACTGTTTTCATCGTTGGATT 60.320 41.667 0.00 0.00 32.48 3.01
124 125 3.188460 CCGAACTGTTTTCATCGTTGGAT 59.812 43.478 0.00 0.00 32.48 3.41
125 126 2.546368 CCGAACTGTTTTCATCGTTGGA 59.454 45.455 0.00 0.00 32.48 3.53
126 127 2.350388 CCCGAACTGTTTTCATCGTTGG 60.350 50.000 0.00 0.00 32.48 3.77
127 128 2.546368 TCCCGAACTGTTTTCATCGTTG 59.454 45.455 0.00 0.00 32.48 4.10
128 129 2.841215 TCCCGAACTGTTTTCATCGTT 58.159 42.857 0.00 0.00 32.48 3.85
129 130 2.536761 TCCCGAACTGTTTTCATCGT 57.463 45.000 0.00 0.00 32.48 3.73
130 131 4.158384 CAAATCCCGAACTGTTTTCATCG 58.842 43.478 0.00 0.00 33.67 3.84
131 132 4.217550 TCCAAATCCCGAACTGTTTTCATC 59.782 41.667 0.00 0.00 0.00 2.92
132 133 4.148838 TCCAAATCCCGAACTGTTTTCAT 58.851 39.130 0.00 0.00 0.00 2.57
133 134 3.556999 TCCAAATCCCGAACTGTTTTCA 58.443 40.909 0.00 0.00 0.00 2.69
134 135 4.577834 TTCCAAATCCCGAACTGTTTTC 57.422 40.909 0.00 0.00 0.00 2.29
135 136 4.160626 TGTTTCCAAATCCCGAACTGTTTT 59.839 37.500 0.00 0.00 0.00 2.43
136 137 3.702045 TGTTTCCAAATCCCGAACTGTTT 59.298 39.130 0.00 0.00 0.00 2.83
137 138 3.067601 GTGTTTCCAAATCCCGAACTGTT 59.932 43.478 0.00 0.00 0.00 3.16
138 139 2.621526 GTGTTTCCAAATCCCGAACTGT 59.378 45.455 0.00 0.00 0.00 3.55
139 140 2.350388 CGTGTTTCCAAATCCCGAACTG 60.350 50.000 0.00 0.00 0.00 3.16
140 141 1.877443 CGTGTTTCCAAATCCCGAACT 59.123 47.619 0.00 0.00 0.00 3.01
141 142 1.068816 CCGTGTTTCCAAATCCCGAAC 60.069 52.381 0.00 0.00 0.00 3.95
142 143 1.240256 CCGTGTTTCCAAATCCCGAA 58.760 50.000 0.00 0.00 0.00 4.30
143 144 0.108963 ACCGTGTTTCCAAATCCCGA 59.891 50.000 0.00 0.00 0.00 5.14
144 145 0.955905 AACCGTGTTTCCAAATCCCG 59.044 50.000 0.00 0.00 0.00 5.14
145 146 4.278919 TCTTAAACCGTGTTTCCAAATCCC 59.721 41.667 5.46 0.00 0.00 3.85
146 147 5.239963 TCTCTTAAACCGTGTTTCCAAATCC 59.760 40.000 5.46 0.00 0.00 3.01
147 148 6.308371 TCTCTTAAACCGTGTTTCCAAATC 57.692 37.500 5.46 0.00 0.00 2.17
148 149 6.894339 ATCTCTTAAACCGTGTTTCCAAAT 57.106 33.333 5.46 0.00 0.00 2.32
149 150 7.804843 TTATCTCTTAAACCGTGTTTCCAAA 57.195 32.000 5.46 0.00 0.00 3.28
150 151 7.804843 TTTATCTCTTAAACCGTGTTTCCAA 57.195 32.000 5.46 0.00 0.00 3.53
151 152 7.804843 TTTTATCTCTTAAACCGTGTTTCCA 57.195 32.000 5.46 0.00 29.47 3.53
200 201 8.508875 TGTCGTAACTTGAGAGTTTTTCTTTTT 58.491 29.630 0.00 0.00 43.48 1.94
201 202 8.036273 TGTCGTAACTTGAGAGTTTTTCTTTT 57.964 30.769 0.00 0.00 43.48 2.27
202 203 7.605410 TGTCGTAACTTGAGAGTTTTTCTTT 57.395 32.000 0.00 0.00 43.48 2.52
203 204 7.333672 ACTTGTCGTAACTTGAGAGTTTTTCTT 59.666 33.333 0.00 0.00 43.48 2.52
204 205 6.817140 ACTTGTCGTAACTTGAGAGTTTTTCT 59.183 34.615 0.00 0.00 43.48 2.52
205 206 6.900299 CACTTGTCGTAACTTGAGAGTTTTTC 59.100 38.462 0.00 0.00 43.48 2.29
206 207 6.592607 TCACTTGTCGTAACTTGAGAGTTTTT 59.407 34.615 0.00 0.00 43.48 1.94
207 208 6.035758 GTCACTTGTCGTAACTTGAGAGTTTT 59.964 38.462 0.00 0.00 43.48 2.43
208 209 5.519206 GTCACTTGTCGTAACTTGAGAGTTT 59.481 40.000 0.00 0.00 43.48 2.66
210 211 4.608951 GTCACTTGTCGTAACTTGAGAGT 58.391 43.478 0.00 0.00 37.87 3.24
211 212 3.664486 CGTCACTTGTCGTAACTTGAGAG 59.336 47.826 0.00 0.00 0.00 3.20
212 213 3.065786 ACGTCACTTGTCGTAACTTGAGA 59.934 43.478 0.00 0.00 37.97 3.27
213 214 3.179795 CACGTCACTTGTCGTAACTTGAG 59.820 47.826 1.27 0.00 37.68 3.02
214 215 3.110358 CACGTCACTTGTCGTAACTTGA 58.890 45.455 1.27 0.00 37.68 3.02
215 216 2.347292 GCACGTCACTTGTCGTAACTTG 60.347 50.000 1.27 0.00 37.68 3.16
216 217 1.856597 GCACGTCACTTGTCGTAACTT 59.143 47.619 1.27 0.00 37.68 2.66
217 218 1.066605 AGCACGTCACTTGTCGTAACT 59.933 47.619 1.27 0.65 37.68 2.24
218 219 1.450905 GAGCACGTCACTTGTCGTAAC 59.549 52.381 1.27 0.00 37.68 2.50
219 220 1.762419 GAGCACGTCACTTGTCGTAA 58.238 50.000 1.27 0.00 37.68 3.18
220 221 0.385098 CGAGCACGTCACTTGTCGTA 60.385 55.000 1.27 0.00 37.68 3.43
221 222 1.657487 CGAGCACGTCACTTGTCGT 60.657 57.895 0.00 0.00 40.12 4.34
222 223 3.138375 CGAGCACGTCACTTGTCG 58.862 61.111 0.00 0.00 34.56 4.35
232 233 1.920574 CATTCTCAGGTTACGAGCACG 59.079 52.381 0.76 0.76 45.75 5.34
233 234 2.960819 ACATTCTCAGGTTACGAGCAC 58.039 47.619 0.00 0.00 0.00 4.40
234 235 3.130516 CCTACATTCTCAGGTTACGAGCA 59.869 47.826 0.00 0.00 0.00 4.26
235 236 3.380637 TCCTACATTCTCAGGTTACGAGC 59.619 47.826 0.00 0.00 33.37 5.03
236 237 4.641094 ACTCCTACATTCTCAGGTTACGAG 59.359 45.833 0.00 0.00 33.37 4.18
237 238 4.398358 CACTCCTACATTCTCAGGTTACGA 59.602 45.833 0.00 0.00 33.37 3.43
238 239 4.398358 TCACTCCTACATTCTCAGGTTACG 59.602 45.833 0.00 0.00 33.37 3.18
239 240 5.916661 TCACTCCTACATTCTCAGGTTAC 57.083 43.478 0.00 0.00 33.37 2.50
240 241 6.017192 AGTTCACTCCTACATTCTCAGGTTA 58.983 40.000 0.00 0.00 33.37 2.85
241 242 4.841246 AGTTCACTCCTACATTCTCAGGTT 59.159 41.667 0.00 0.00 33.37 3.50
242 243 4.421131 AGTTCACTCCTACATTCTCAGGT 58.579 43.478 0.00 0.00 33.37 4.00
243 244 5.413309 AAGTTCACTCCTACATTCTCAGG 57.587 43.478 0.00 0.00 0.00 3.86
244 245 5.121454 GCAAAGTTCACTCCTACATTCTCAG 59.879 44.000 0.00 0.00 0.00 3.35
245 246 4.997395 GCAAAGTTCACTCCTACATTCTCA 59.003 41.667 0.00 0.00 0.00 3.27
246 247 4.997395 TGCAAAGTTCACTCCTACATTCTC 59.003 41.667 0.00 0.00 0.00 2.87
247 248 4.973168 TGCAAAGTTCACTCCTACATTCT 58.027 39.130 0.00 0.00 0.00 2.40
248 249 5.335191 CCTTGCAAAGTTCACTCCTACATTC 60.335 44.000 0.00 0.00 44.25 2.67
249 250 4.520492 CCTTGCAAAGTTCACTCCTACATT 59.480 41.667 0.00 0.00 44.25 2.71
250 251 4.074970 CCTTGCAAAGTTCACTCCTACAT 58.925 43.478 0.00 0.00 44.25 2.29
251 252 3.476552 CCTTGCAAAGTTCACTCCTACA 58.523 45.455 0.00 0.00 44.25 2.74
252 253 2.814336 CCCTTGCAAAGTTCACTCCTAC 59.186 50.000 0.00 0.00 44.25 3.18
253 254 2.224769 CCCCTTGCAAAGTTCACTCCTA 60.225 50.000 0.00 0.00 44.25 2.94
254 255 1.479389 CCCCTTGCAAAGTTCACTCCT 60.479 52.381 0.00 0.00 44.25 3.69
255 256 0.961753 CCCCTTGCAAAGTTCACTCC 59.038 55.000 0.00 0.00 44.25 3.85
256 257 1.692411 ACCCCTTGCAAAGTTCACTC 58.308 50.000 0.00 0.00 44.25 3.51
257 258 2.583143 GTACCCCTTGCAAAGTTCACT 58.417 47.619 0.00 0.00 44.25 3.41
258 259 1.611977 GGTACCCCTTGCAAAGTTCAC 59.388 52.381 0.00 0.00 44.25 3.18
259 260 1.989706 GGTACCCCTTGCAAAGTTCA 58.010 50.000 0.00 0.00 44.25 3.18
268 269 8.278017 AATCACTGATTACAGGGTACCCCTTG 62.278 46.154 28.14 21.87 46.56 3.61
269 270 6.296787 AATCACTGATTACAGGGTACCCCTT 61.297 44.000 28.14 16.94 46.56 3.95
270 271 4.825126 AATCACTGATTACAGGGTACCCCT 60.825 45.833 28.14 15.45 46.56 4.79
271 272 3.458487 AATCACTGATTACAGGGTACCCC 59.542 47.826 28.14 11.51 46.56 4.95
272 273 4.772886 AATCACTGATTACAGGGTACCC 57.227 45.455 24.65 24.65 46.56 3.69
273 274 4.809426 CGAAATCACTGATTACAGGGTACC 59.191 45.833 2.17 2.17 46.56 3.34
274 275 4.809426 CCGAAATCACTGATTACAGGGTAC 59.191 45.833 4.65 0.00 46.56 3.34
275 276 4.682320 GCCGAAATCACTGATTACAGGGTA 60.682 45.833 4.65 0.00 46.56 3.69
276 277 3.873910 CCGAAATCACTGATTACAGGGT 58.126 45.455 4.65 0.00 46.56 4.34
280 281 9.990360 TTATATTAGCCGAAATCACTGATTACA 57.010 29.630 4.65 0.00 31.46 2.41
283 284 8.993121 CACTTATATTAGCCGAAATCACTGATT 58.007 33.333 0.00 0.00 33.25 2.57
284 285 8.150945 ACACTTATATTAGCCGAAATCACTGAT 58.849 33.333 0.00 0.00 0.00 2.90
285 286 7.438160 CACACTTATATTAGCCGAAATCACTGA 59.562 37.037 0.00 0.00 0.00 3.41
286 287 7.224753 ACACACTTATATTAGCCGAAATCACTG 59.775 37.037 0.00 0.00 0.00 3.66
287 288 7.272978 ACACACTTATATTAGCCGAAATCACT 58.727 34.615 0.00 0.00 0.00 3.41
288 289 7.478520 ACACACTTATATTAGCCGAAATCAC 57.521 36.000 0.00 0.00 0.00 3.06
303 304 9.661563 TCAAGGACGAAATTTATACACACTTAT 57.338 29.630 0.00 0.00 0.00 1.73
304 305 9.661563 ATCAAGGACGAAATTTATACACACTTA 57.338 29.630 0.00 0.00 0.00 2.24
305 306 7.972832 TCAAGGACGAAATTTATACACACTT 57.027 32.000 0.00 0.00 0.00 3.16
306 307 7.822334 TCATCAAGGACGAAATTTATACACACT 59.178 33.333 0.00 0.00 0.00 3.55
307 308 7.970384 TCATCAAGGACGAAATTTATACACAC 58.030 34.615 0.00 0.00 0.00 3.82
308 309 8.554835 TTCATCAAGGACGAAATTTATACACA 57.445 30.769 0.00 0.00 0.00 3.72
309 310 9.438291 CATTCATCAAGGACGAAATTTATACAC 57.562 33.333 0.00 0.00 0.00 2.90
310 311 9.389755 TCATTCATCAAGGACGAAATTTATACA 57.610 29.630 0.00 0.00 0.00 2.29
313 314 7.910162 CGTTCATTCATCAAGGACGAAATTTAT 59.090 33.333 0.00 0.00 0.00 1.40
314 315 7.240674 CGTTCATTCATCAAGGACGAAATTTA 58.759 34.615 0.00 0.00 0.00 1.40
315 316 6.086222 CGTTCATTCATCAAGGACGAAATTT 58.914 36.000 0.00 0.00 0.00 1.82
316 317 5.391950 CCGTTCATTCATCAAGGACGAAATT 60.392 40.000 0.00 0.00 0.00 1.82
317 318 4.094887 CCGTTCATTCATCAAGGACGAAAT 59.905 41.667 0.00 0.00 0.00 2.17
318 319 3.435327 CCGTTCATTCATCAAGGACGAAA 59.565 43.478 0.00 0.00 0.00 3.46
319 320 3.000041 CCGTTCATTCATCAAGGACGAA 59.000 45.455 0.00 0.00 0.00 3.85
320 321 2.028476 ACCGTTCATTCATCAAGGACGA 60.028 45.455 0.00 0.00 0.00 4.20
321 322 2.094258 CACCGTTCATTCATCAAGGACG 59.906 50.000 0.00 0.00 0.00 4.79
322 323 2.420022 CCACCGTTCATTCATCAAGGAC 59.580 50.000 0.00 0.00 0.00 3.85
323 324 2.039746 ACCACCGTTCATTCATCAAGGA 59.960 45.455 0.00 0.00 0.00 3.36
324 325 2.436417 ACCACCGTTCATTCATCAAGG 58.564 47.619 0.00 0.00 0.00 3.61
325 326 6.280643 TCTATACCACCGTTCATTCATCAAG 58.719 40.000 0.00 0.00 0.00 3.02
326 327 6.228616 TCTATACCACCGTTCATTCATCAA 57.771 37.500 0.00 0.00 0.00 2.57
327 328 5.739070 GCTCTATACCACCGTTCATTCATCA 60.739 44.000 0.00 0.00 0.00 3.07
328 329 4.686554 GCTCTATACCACCGTTCATTCATC 59.313 45.833 0.00 0.00 0.00 2.92
329 330 4.503296 GGCTCTATACCACCGTTCATTCAT 60.503 45.833 0.00 0.00 0.00 2.57
330 331 3.181469 GGCTCTATACCACCGTTCATTCA 60.181 47.826 0.00 0.00 0.00 2.57
331 332 3.391049 GGCTCTATACCACCGTTCATTC 58.609 50.000 0.00 0.00 0.00 2.67
332 333 2.104281 GGGCTCTATACCACCGTTCATT 59.896 50.000 0.00 0.00 0.00 2.57
333 334 1.692519 GGGCTCTATACCACCGTTCAT 59.307 52.381 0.00 0.00 0.00 2.57
334 335 1.117150 GGGCTCTATACCACCGTTCA 58.883 55.000 0.00 0.00 0.00 3.18
335 336 1.117150 TGGGCTCTATACCACCGTTC 58.883 55.000 0.00 0.00 0.00 3.95
336 337 3.310352 TGGGCTCTATACCACCGTT 57.690 52.632 0.00 0.00 0.00 4.44
341 342 1.054406 GGCTGGTGGGCTCTATACCA 61.054 60.000 0.00 0.00 41.90 3.25
342 343 1.755384 GGCTGGTGGGCTCTATACC 59.245 63.158 0.00 0.00 37.53 2.73
343 344 0.764752 AGGGCTGGTGGGCTCTATAC 60.765 60.000 0.00 0.00 41.80 1.47
344 345 0.030092 AAGGGCTGGTGGGCTCTATA 60.030 55.000 0.00 0.00 42.93 1.31
345 346 0.030092 TAAGGGCTGGTGGGCTCTAT 60.030 55.000 0.00 0.00 42.93 1.98
346 347 0.981277 GTAAGGGCTGGTGGGCTCTA 60.981 60.000 0.00 0.00 42.93 2.43
347 348 2.124996 TAAGGGCTGGTGGGCTCT 59.875 61.111 0.00 0.00 46.09 4.09
348 349 2.272471 GTAAGGGCTGGTGGGCTC 59.728 66.667 0.00 0.00 40.65 4.70
349 350 3.339093 GGTAAGGGCTGGTGGGCT 61.339 66.667 0.00 0.00 40.65 5.19
350 351 2.723464 TTTGGTAAGGGCTGGTGGGC 62.723 60.000 0.00 0.00 40.05 5.36
351 352 0.178947 TTTTGGTAAGGGCTGGTGGG 60.179 55.000 0.00 0.00 0.00 4.61
352 353 1.824852 GATTTTGGTAAGGGCTGGTGG 59.175 52.381 0.00 0.00 0.00 4.61
353 354 2.493278 CTGATTTTGGTAAGGGCTGGTG 59.507 50.000 0.00 0.00 0.00 4.17
354 355 2.557452 CCTGATTTTGGTAAGGGCTGGT 60.557 50.000 0.00 0.00 0.00 4.00
355 356 2.102578 CCTGATTTTGGTAAGGGCTGG 58.897 52.381 0.00 0.00 0.00 4.85
356 357 1.478105 GCCTGATTTTGGTAAGGGCTG 59.522 52.381 0.00 0.00 35.73 4.85
357 358 1.852633 GCCTGATTTTGGTAAGGGCT 58.147 50.000 0.00 0.00 35.73 5.19
358 359 0.824109 GGCCTGATTTTGGTAAGGGC 59.176 55.000 0.00 0.00 46.56 5.19
359 360 1.102978 CGGCCTGATTTTGGTAAGGG 58.897 55.000 0.00 0.00 0.00 3.95
360 361 2.122783 TCGGCCTGATTTTGGTAAGG 57.877 50.000 0.00 0.00 0.00 2.69
361 362 4.423732 CATTTCGGCCTGATTTTGGTAAG 58.576 43.478 0.00 0.00 0.00 2.34
362 363 3.194542 CCATTTCGGCCTGATTTTGGTAA 59.805 43.478 0.00 0.00 0.00 2.85
363 364 2.757868 CCATTTCGGCCTGATTTTGGTA 59.242 45.455 0.00 0.00 0.00 3.25
364 365 1.550072 CCATTTCGGCCTGATTTTGGT 59.450 47.619 0.00 0.00 0.00 3.67
365 366 1.134729 CCCATTTCGGCCTGATTTTGG 60.135 52.381 0.00 7.42 0.00 3.28
366 367 1.740043 GCCCATTTCGGCCTGATTTTG 60.740 52.381 0.00 0.00 43.66 2.44
367 368 0.536724 GCCCATTTCGGCCTGATTTT 59.463 50.000 0.00 0.00 43.66 1.82
368 369 2.201927 GCCCATTTCGGCCTGATTT 58.798 52.632 0.00 0.00 43.66 2.17
369 370 3.939564 GCCCATTTCGGCCTGATT 58.060 55.556 0.00 0.00 43.66 2.57
376 377 1.369091 CCACGAGAAGCCCATTTCGG 61.369 60.000 0.00 0.00 37.38 4.30
377 378 1.369091 CCCACGAGAAGCCCATTTCG 61.369 60.000 0.00 0.00 38.88 3.46
378 379 1.657751 GCCCACGAGAAGCCCATTTC 61.658 60.000 0.00 0.00 0.00 2.17
379 380 1.678970 GCCCACGAGAAGCCCATTT 60.679 57.895 0.00 0.00 0.00 2.32
380 381 2.044946 GCCCACGAGAAGCCCATT 60.045 61.111 0.00 0.00 0.00 3.16
381 382 4.115199 GGCCCACGAGAAGCCCAT 62.115 66.667 0.00 0.00 41.00 4.00
384 385 2.056906 ATATGGGCCCACGAGAAGCC 62.057 60.000 31.51 5.51 46.37 4.35
385 386 0.685097 TATATGGGCCCACGAGAAGC 59.315 55.000 31.51 0.00 0.00 3.86
386 387 1.276421 CCTATATGGGCCCACGAGAAG 59.724 57.143 31.51 19.50 0.00 2.85
387 388 1.348064 CCTATATGGGCCCACGAGAA 58.652 55.000 31.51 11.10 0.00 2.87
388 389 0.190069 ACCTATATGGGCCCACGAGA 59.810 55.000 31.51 15.17 41.11 4.04
389 390 1.002087 GAACCTATATGGGCCCACGAG 59.998 57.143 31.51 23.52 41.11 4.18
390 391 1.053424 GAACCTATATGGGCCCACGA 58.947 55.000 31.51 19.89 41.11 4.35
391 392 0.036306 GGAACCTATATGGGCCCACG 59.964 60.000 31.51 15.91 41.11 4.94
392 393 1.073923 CTGGAACCTATATGGGCCCAC 59.926 57.143 31.51 12.01 41.11 4.61
393 394 1.444933 CTGGAACCTATATGGGCCCA 58.555 55.000 30.92 30.92 41.11 5.36
394 395 0.038310 GCTGGAACCTATATGGGCCC 59.962 60.000 17.59 17.59 41.11 5.80
395 396 0.038310 GGCTGGAACCTATATGGGCC 59.962 60.000 4.76 0.00 41.11 5.80
396 397 0.321653 CGGCTGGAACCTATATGGGC 60.322 60.000 4.76 0.00 41.11 5.36
397 398 1.002087 GTCGGCTGGAACCTATATGGG 59.998 57.143 3.06 3.06 41.11 4.00
398 399 1.971357 AGTCGGCTGGAACCTATATGG 59.029 52.381 0.00 0.00 42.93 2.74
399 400 4.866508 TTAGTCGGCTGGAACCTATATG 57.133 45.455 0.00 0.00 0.00 1.78
400 401 5.881923 TTTTAGTCGGCTGGAACCTATAT 57.118 39.130 0.00 0.00 0.00 0.86
401 402 5.680594 TTTTTAGTCGGCTGGAACCTATA 57.319 39.130 0.00 0.00 0.00 1.31
402 403 4.563140 TTTTTAGTCGGCTGGAACCTAT 57.437 40.909 0.00 0.00 0.00 2.57
404 405 2.943036 TTTTTAGTCGGCTGGAACCT 57.057 45.000 0.00 0.00 0.00 3.50
429 430 1.148310 ACAGTTGAGCCGTGATTTCG 58.852 50.000 0.00 0.00 0.00 3.46
430 431 2.808543 AGAACAGTTGAGCCGTGATTTC 59.191 45.455 0.00 0.00 0.00 2.17
431 432 2.549754 CAGAACAGTTGAGCCGTGATTT 59.450 45.455 0.00 0.00 0.00 2.17
432 433 2.146342 CAGAACAGTTGAGCCGTGATT 58.854 47.619 0.00 0.00 0.00 2.57
433 434 1.344438 TCAGAACAGTTGAGCCGTGAT 59.656 47.619 0.00 0.00 0.00 3.06
434 435 0.750249 TCAGAACAGTTGAGCCGTGA 59.250 50.000 0.00 0.00 0.00 4.35
435 436 1.800805 ATCAGAACAGTTGAGCCGTG 58.199 50.000 0.00 0.00 0.00 4.94
436 437 2.550830 AATCAGAACAGTTGAGCCGT 57.449 45.000 0.00 0.00 0.00 5.68
437 438 3.365364 GGAAAATCAGAACAGTTGAGCCG 60.365 47.826 0.00 0.00 0.00 5.52
438 439 3.057245 GGGAAAATCAGAACAGTTGAGCC 60.057 47.826 0.00 0.00 0.00 4.70
439 440 3.569701 TGGGAAAATCAGAACAGTTGAGC 59.430 43.478 0.00 0.00 0.00 4.26
440 441 5.972107 ATGGGAAAATCAGAACAGTTGAG 57.028 39.130 0.00 0.00 0.00 3.02
441 442 8.956426 GTATAATGGGAAAATCAGAACAGTTGA 58.044 33.333 0.00 0.00 0.00 3.18
442 443 8.739039 TGTATAATGGGAAAATCAGAACAGTTG 58.261 33.333 0.00 0.00 0.00 3.16
443 444 8.877864 TGTATAATGGGAAAATCAGAACAGTT 57.122 30.769 0.00 0.00 0.00 3.16
444 445 8.877864 TTGTATAATGGGAAAATCAGAACAGT 57.122 30.769 0.00 0.00 0.00 3.55
471 472 9.906660 TTATTCACAGAAAATCATAGCGTTTTT 57.093 25.926 0.00 0.00 30.78 1.94
475 476 8.774586 GGTATTATTCACAGAAAATCATAGCGT 58.225 33.333 0.00 0.00 0.00 5.07
476 477 7.952101 CGGTATTATTCACAGAAAATCATAGCG 59.048 37.037 7.03 7.03 37.60 4.26
477 478 8.230486 CCGGTATTATTCACAGAAAATCATAGC 58.770 37.037 0.00 0.00 0.00 2.97
478 479 9.489084 TCCGGTATTATTCACAGAAAATCATAG 57.511 33.333 0.00 0.00 0.00 2.23
480 481 8.924511 ATCCGGTATTATTCACAGAAAATCAT 57.075 30.769 0.00 0.00 0.00 2.45
481 482 8.620416 CAATCCGGTATTATTCACAGAAAATCA 58.380 33.333 0.00 0.00 0.00 2.57
482 483 8.836413 TCAATCCGGTATTATTCACAGAAAATC 58.164 33.333 0.00 0.00 0.00 2.17
483 484 8.746052 TCAATCCGGTATTATTCACAGAAAAT 57.254 30.769 0.00 0.00 0.00 1.82
484 485 8.568676 TTCAATCCGGTATTATTCACAGAAAA 57.431 30.769 0.00 0.00 0.00 2.29
485 486 7.201696 GCTTCAATCCGGTATTATTCACAGAAA 60.202 37.037 0.00 0.00 0.00 2.52
486 487 6.260050 GCTTCAATCCGGTATTATTCACAGAA 59.740 38.462 0.00 0.00 0.00 3.02
487 488 5.758296 GCTTCAATCCGGTATTATTCACAGA 59.242 40.000 0.00 0.00 0.00 3.41
488 489 5.333339 CGCTTCAATCCGGTATTATTCACAG 60.333 44.000 0.00 0.00 0.00 3.66
489 490 4.509970 CGCTTCAATCCGGTATTATTCACA 59.490 41.667 0.00 0.00 0.00 3.58
490 491 4.748102 TCGCTTCAATCCGGTATTATTCAC 59.252 41.667 0.00 0.00 0.00 3.18
491 492 4.951254 TCGCTTCAATCCGGTATTATTCA 58.049 39.130 0.00 0.00 0.00 2.57
492 493 5.917541 TTCGCTTCAATCCGGTATTATTC 57.082 39.130 0.00 0.00 0.00 1.75
493 494 5.995282 TGATTCGCTTCAATCCGGTATTATT 59.005 36.000 0.00 0.00 32.51 1.40
494 495 5.547465 TGATTCGCTTCAATCCGGTATTAT 58.453 37.500 0.00 0.00 32.51 1.28
495 496 4.951254 TGATTCGCTTCAATCCGGTATTA 58.049 39.130 0.00 0.00 32.51 0.98
496 497 3.804036 TGATTCGCTTCAATCCGGTATT 58.196 40.909 0.00 0.00 32.51 1.89
497 498 3.469008 TGATTCGCTTCAATCCGGTAT 57.531 42.857 0.00 0.00 32.51 2.73
498 499 2.971660 TGATTCGCTTCAATCCGGTA 57.028 45.000 0.00 0.00 32.51 4.02
499 500 2.107950 TTGATTCGCTTCAATCCGGT 57.892 45.000 0.00 0.00 32.51 5.28
500 501 3.065233 TGAATTGATTCGCTTCAATCCGG 59.935 43.478 11.49 0.00 43.73 5.14
501 502 4.277257 TGAATTGATTCGCTTCAATCCG 57.723 40.909 11.49 0.00 43.73 4.18
502 503 4.040376 GCTGAATTGATTCGCTTCAATCC 58.960 43.478 11.49 2.34 43.73 3.01
503 504 4.733887 CAGCTGAATTGATTCGCTTCAATC 59.266 41.667 8.42 1.29 43.73 2.67
504 505 4.397103 TCAGCTGAATTGATTCGCTTCAAT 59.603 37.500 15.67 6.78 45.85 2.57
505 506 3.752747 TCAGCTGAATTGATTCGCTTCAA 59.247 39.130 15.67 2.91 41.26 2.69
506 507 3.337358 TCAGCTGAATTGATTCGCTTCA 58.663 40.909 15.67 7.22 41.26 3.02
507 508 4.548991 ATCAGCTGAATTGATTCGCTTC 57.451 40.909 22.50 0.00 41.26 3.86
508 509 7.734924 TTATATCAGCTGAATTGATTCGCTT 57.265 32.000 22.50 1.52 41.26 4.68
509 510 7.734924 TTTATATCAGCTGAATTGATTCGCT 57.265 32.000 22.50 2.10 42.68 4.93
510 511 7.058806 CGTTTTATATCAGCTGAATTGATTCGC 59.941 37.037 22.50 5.81 39.62 4.70
511 512 7.058806 GCGTTTTATATCAGCTGAATTGATTCG 59.941 37.037 22.50 19.90 39.62 3.34
512 513 7.324616 GGCGTTTTATATCAGCTGAATTGATTC 59.675 37.037 22.50 8.83 36.68 2.52
513 514 7.013655 AGGCGTTTTATATCAGCTGAATTGATT 59.986 33.333 22.50 5.39 36.68 2.57
514 515 6.488006 AGGCGTTTTATATCAGCTGAATTGAT 59.512 34.615 22.50 13.80 38.70 2.57
515 516 5.822519 AGGCGTTTTATATCAGCTGAATTGA 59.177 36.000 22.50 6.98 0.00 2.57
516 517 6.064846 AGGCGTTTTATATCAGCTGAATTG 57.935 37.500 22.50 6.14 0.00 2.32
517 518 6.699575 AAGGCGTTTTATATCAGCTGAATT 57.300 33.333 22.50 13.52 0.00 2.17
518 519 6.498304 CAAAGGCGTTTTATATCAGCTGAAT 58.502 36.000 22.50 16.89 0.00 2.57
519 520 5.676079 GCAAAGGCGTTTTATATCAGCTGAA 60.676 40.000 22.50 10.69 0.00 3.02
520 521 4.201910 GCAAAGGCGTTTTATATCAGCTGA 60.202 41.667 20.79 20.79 0.00 4.26
521 522 4.037690 GCAAAGGCGTTTTATATCAGCTG 58.962 43.478 7.63 7.63 0.00 4.24
522 523 4.292977 GCAAAGGCGTTTTATATCAGCT 57.707 40.909 0.70 0.00 0.00 4.24
591 602 2.780693 TGGGGAGGAGAGGGACAG 59.219 66.667 0.00 0.00 0.00 3.51
1026 1037 2.146061 GGAGGAGGAGGAGCCCATG 61.146 68.421 0.00 0.00 37.37 3.66
1077 1088 4.680237 CAGAACTCCACGCCGCCA 62.680 66.667 0.00 0.00 0.00 5.69
1598 1616 7.606073 ACAGCAGTCAATAATATACACACACAA 59.394 33.333 0.00 0.00 0.00 3.33
1651 1671 4.336889 TCGATCCAAAGTGTCAAAGAGT 57.663 40.909 0.00 0.00 0.00 3.24
1707 1727 3.340814 ACACAGCACTGAATTAGGAGG 57.659 47.619 4.31 0.00 0.00 4.30
1724 1744 7.538678 CAGAAACAAGAGGCATAAAATGTACAC 59.461 37.037 0.00 0.00 0.00 2.90
1729 1749 7.327761 CACTTCAGAAACAAGAGGCATAAAATG 59.672 37.037 0.00 0.00 0.00 2.32
1755 1776 7.603784 AGAATTGCCTGATAAAAATTTGTCACC 59.396 33.333 1.75 0.00 34.09 4.02
1772 1793 5.796424 ATGAACAAAACAGAGAATTGCCT 57.204 34.783 0.00 0.00 0.00 4.75
1803 1824 5.012148 CCTCTGGAACTCAACCCGAATATAT 59.988 44.000 0.00 0.00 0.00 0.86
1804 1825 4.344102 CCTCTGGAACTCAACCCGAATATA 59.656 45.833 0.00 0.00 0.00 0.86
1806 1827 2.500098 CCTCTGGAACTCAACCCGAATA 59.500 50.000 0.00 0.00 0.00 1.75
1807 1828 1.279271 CCTCTGGAACTCAACCCGAAT 59.721 52.381 0.00 0.00 0.00 3.34
1808 1829 0.685097 CCTCTGGAACTCAACCCGAA 59.315 55.000 0.00 0.00 0.00 4.30
1809 1830 0.178944 TCCTCTGGAACTCAACCCGA 60.179 55.000 0.00 0.00 0.00 5.14
1853 1883 5.291128 CGCTTATGTTGTAGTAGGAACCAAG 59.709 44.000 0.00 0.00 0.00 3.61
1943 1980 9.184523 TCATACAGAAAATAATTGTGGGGTAAG 57.815 33.333 0.00 0.00 0.00 2.34
1947 1984 7.124147 ACCTTCATACAGAAAATAATTGTGGGG 59.876 37.037 0.00 0.00 35.40 4.96
1964 2001 6.039047 TGAACTACATCCGTCTACCTTCATAC 59.961 42.308 0.00 0.00 0.00 2.39
1995 2032 3.064207 TCTATGACACAAACTTCACGGC 58.936 45.455 0.00 0.00 0.00 5.68
1997 2034 5.670097 CAACTCTATGACACAAACTTCACG 58.330 41.667 0.00 0.00 0.00 4.35
2154 2276 4.618489 GCAAACTTTCCATTTCAGTCATCG 59.382 41.667 0.00 0.00 0.00 3.84
2238 2361 5.296151 ACGAGTAATGATGGATGATGGTT 57.704 39.130 0.00 0.00 0.00 3.67
2256 2379 7.755822 AGTCTCTTAACTGCAATAAGTAACGAG 59.244 37.037 15.04 8.07 33.17 4.18
2259 2382 7.817962 TCCAGTCTCTTAACTGCAATAAGTAAC 59.182 37.037 15.04 13.83 44.34 2.50
2331 2456 2.293122 CGTGCCTTTCCAAAATCAGTCA 59.707 45.455 0.00 0.00 0.00 3.41
2342 2467 1.949257 CAAGTCACCGTGCCTTTCC 59.051 57.895 0.00 0.00 0.00 3.13
2444 2570 7.302524 TGAAAGTTGTTCAGTTTGTACTTGAC 58.697 34.615 0.00 0.00 30.26 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.