>input_sequence_78074
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--------------------------------------------------ATGGCGGCCAGCCTGTGGCGCGCGGTCATG
GGCTCCTCCTCCTCCTCCTCGTCGGGCGGCGTCGACGACCCGGCGGCTGGCGGCGTGGAGTTCTGGCACGGGGCGGAGCG
CGCGGGGTGGCTGACCAAGCAGGGCGAGTACATCAAGACGTGGCGGCGGCGCTGGTTCGTGCTCAAGCAGGGCCGGCTCT
TCTGGTTCAAGGACGCCGCCGTCACGCGCGGCTCCGTGCCCCGCGGGATCATCCCCGTCTCCTCCTGCCTCACCGTCAAG
GGCGCCGAGGACGTGCTCAACCGCCAGTTCGCCTTCGAGCTCTCCACCCCGGCCGAGACCATGTACTTCATCGCCGACGC
CGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGATCCATCGTGCAGCACTCCCGCTCCGTCACCGACGCCGAGG
TCGTTGACTACGACAGCCGCCCCCAGCCCCCGCCGC------AGCCCAAGAAGAGCGAGGCCAGCGAGCCGTCAGAGTAA
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>chr1D_1_TraesCS1D01G277400
CCGTGCTTCCAACTCGGTTTTATCTTGTCTTGTTTTTCCGTAAAAAAAACTTTTTTATAGGTTTCAAAAAAAGTTTTTCA
AAACCTATCAGCATTGATCTAGTTCTAAAATCTCAACGCGAAAAATCCAACGATGAAAACAGTTCGGGATTTGGAAACAC
GGTTTAAGAGATAAAATATTTTGAATAAATAAACCTACGAAAAAAGAAAAACTCTCAAGTTACGACAAGTGACGTGCTCG
TAACCTGAGAATGTAGGAGTGAACTTTGCAAGGGGTACCCTGTAATCAGTGATTTCGGCTAATATAAGTGTGTATAAATT
TCGTCCTTGATGAATGAACGGTGGTATAGAGCCCACCAGCCCTTACCAAAATCAGGCCGAAATGGGCTTCTCGTGGGCCC
ATATAGGTTCCAGCCGACTAAAAAAAAGCCGAAATCACGGCTCAACTGTTCTGATTTTCCCATTATACAAAAAAAACGCT
ATGATTTTCTGTGAATAATACCGGATTGAAGCGAATCAATTCAGCTGATATAAAACGCCTTTGCGATCGCATCAAAATCA
CCGCCCGGC----------GGCGCAATACTCCCCACCCACTCTGTCCCTCTCCTCCCCANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGATGGCGGCCAGCCTGTGGCGCGCGGTCATG
GGCTCCTCCTCCTCCTCCTCGTCGGGCGGCGTCGACGACCCGGCGGCTGGCGGCGTGGAGTTCTGGCACGGGGCGGAGCG
CGCGGGGTGGCTGACCAAGCAGGGCGAGTACATCAAGACGTGGCGGCGGCGCTGGTTCGTGCTCAAGCAGGGCCGGCTCT
TCTGGTTCAAGGACGCCGCCGTCACGCGCGGCTCCGTGCCCCGCGGGATCATCCCCGTCTCCTCCTGCCTCACCGTCAAG
GGCGCCGAGGACGTGCTCAACCGCCAGTTCGCCTTCGAGCTCTCCACCCCGGCCGAGACCATGTACTTCATCGCCGACGC
CGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGATCCATCGTGCAGCACTCCCGCTCCGTCACCGACGCCGAGG
TCGTTGACTACGACAGCCGCCCCCAGCCCCCGCCGC------AGCCCAAGAAGAGCGAGGCCAGCGAGCCGTCAGAGTAA
GATCGCGGTGAACTCCGTCAGCCC-TCTCTCGATATGACTCTGTTGTATCAACTTATGTGATTGTGAATTCGTGTTTTTG
TTTCTTATTTATTGATTGTG-TGTGTATATTATTGACTGCTGTCTGG-AATAATTGGGTTTAAGTGTATAACTCTTTGAC
ACTTTGGATCGATTGACATGTTATAATTTCCGAAAATTGGTGGTCGCCTCCTAATTCAGTGCTGTGTACATTTTATGCCT
CTT-GTTTCTGAAGTGGTGACAAATTTTTATCAGGCAATTCTCTGTTTTGTTCATTTTGCTTAATATATT--------CG
GGTT-GAGTTCCAGAGGATTTCACCTTAACTGCCACCAATTTCTTGGTTCCTACTACAACATAAGCGC-------AAGAG
AGTGTTGTATAGAGGGTCTTTTCACAATAAATAGCTCATTTTGGCAAGCAAAATGAATCCTTACCCCACAATTATTTTCT
GTATGAAGGTAGACGGATGTAGTTCAATATTGCCGTGAAGT---------------------------------------
--------------------------------------------TTGTGTCATAGAGTTGCTATCCTAATTTATATGAGC
AACTCCAGTGGCAGCAGTACAATGGAAGTTT-GAGTGTGACCAATGTCAACTTGTCAAGCATTGTGTTTATTAGCAGTCA
ACTTGAACAATCATACACTTATTTTTTTTTC-ATCCGATGACTGAAATGGAAAGTTT-GCCTTTATAAGAGACTGGAGTC
TGGAGTTGGTGTGGTGGTGCTGGGCTTTGGTGAGTACAGTAACCATCATCCATCATTACTCGTTACTTATTGCAGTTAAG
AGACTGGATTCGTCATCCTTAGTCAATCATGCGCAAACACCAACTGGTACTC--TTGACTGATTTTGGAAAGGCACGGTG
ACTT-GCATGATCTTAGAAACTGAATTTTGAACATTGATTCTTTTGACATTGTATTGTTCTAAACTCTGATATCATAATC
ATGATGACTGTCAAGT---------ACAAACTGAACAACTTTCAATCTTTCATTCTC--------------GAAATAGTG
AGTGAAAAGAGT
>chr1A_535
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------------------------------------------------------ACGCCTTTGCGATCGCATCAAAATCA
CCGCCCGGCCAAATCCAGCGGCGCAATACTCCCCACCCACTTTGTCCCTCTCCTCCCTCCCCAGTCGCAGTCCCCCCCGG
CGCTCGCACGCGCCCGCCCGATCCCGGATCCCCGATCCCCCCCTG-----------------------------------
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----------------------------------------------CGCGATGGCGGCCAGCCTGTGGCGCGCGGTGATG
GGCTCCTCCTCCTCCCCCTCGTCGGGCGGCGGCGACGACCCGGCGGCGGGCGGCGTGGAGTTCTGGCACGGCGCGGAGCG
CGCCGGGTGGCTGACCAAGCAGGGCGAGTACATCAAGACGTGGCGGCGGCGCTGGTTCGTGCTCAAGCAGGGCCGGCTCT
TCTGGTTCAAGGACGCCGCCGTCACGCGCGGCTCCGTGCCCCGCGGGATCATCCCCGTCTCCTCCTGCCTCACCGTCAAG
GGCGCCGAGGACGTGCTCAACCGCCAGTTCGCCTTCGAGCTCTCCACCCCGGCCGAGACCATGTACTTCATCGCCGACGC
CGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGGTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCTGAGG
TCGTTGACTACGACAGCCGCCCCCAGCCCCCGCCGCAGCCGCAGCCCAAGAAGAGCGAGGCCAGCGAGCTGTCAGAGTAA
GATCGCGGTGAACTCCGTC-GCCC-TCTCTCGATATGACTCTGTTGTATCAGCTTATGTGATTGTGAATTCGTGTTTTTG
TTTCTTATTTATTGACTGTATTGTGTATATTATTGACTGCTGTCTGGGAATAATTGGGTTTCAGTGTATAGCTCATTGAC
ACTTTGGATCGATC-ACATGTTATAATTTCCAAAAATTGGTGGTCGTCTCCTAATACAGTGCTCTGTAAATTTTATGCCT
CTT-GTTTCTGAAGTCGTGAAG--TTTTTATCTGGCAATTCCCTGTTTTGTTCGTTTTGCTTATGAGTGGAATATACCCG
GGTT-GAGTTCGAGAGGATTTCACCTTCACTGCCACCAATC-GTTGGTTCCTACTACAACATAAGCGCCGTACAGAAGAG
AGTGTTCTATAGAGGGTCTGTTTGCAGTAAACATCTCATTTTGGCAAGCAAAACGAGTCATTATCACACAATTATTTGCT
ATATGAAGTTAGACAGATGTAATTCAATATTCCTGTGAAGT---------------------------------------
--------------------------------------------TTGTGTCATAGAGTTGCTATCCTAATTTATATGAGC
AACTCCAGTGGCAGCAGTACAATGGAAGTTT-GAGTGTTACCAATGTCAACTTGTCAAGCATCGTGTTTATTAGCAGACA
ACTTGAACAATCATACACTTATTTTTTC--C-ATCTGATGACTGAAATGGATACTTTTGCCTTTATAAGAGACTGGAGTC
TGGAGTTGGTGTGGTGGTGCTGGGCTTTGGTGAGTACAGTGACCATCATCCATCATTAGTCATTACTTATTGCAGTTAAG
AGACTGGATTCGTCATTCTTAGTCAATCATGCGCAAACACCAAATGGTACTC--T-GACTGATTTTTGAAAGGCATGGTG
ACTTAGCATGATCTTAAAAACTGAACTTTGAACATTGATTCTTTTGACATTGTATTGTTCAAAACTGGGATATCATAATC
ATGATTACTCTCAAGTACAAACTGAACAAACTGAACAACTTTCAATCTTTCATTCTC--------------GA-------
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>chr1B_997
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----------------------------------------------CGCGATGGCGGCCAGCCTGTGGCGCGCGGTGATG
GGCTCC---------TCCTCGTCGGGCGGCGGCGACGACCCGGCGGCGGGCGGCGTGGAGTTCTGGCACGGGGCGGAGCG
CGCGGGGTGGCTGACCAAGCAGGGCGAGTACATCAAGACGTGGCGGCGGCGCTGGTTCGTACTCAAGCAGGGCCGGCTCT
TCTGGTTCAAGGACGCCGCCGTCAGGCGCGGCTCGGTGCCCCGGGGGATCATCCCCGTCTCCTCCTGCCTCACCGTCAAG
GGCGCCGAGGACGTGCTCAACCGCCAGTTCGCCTTCGAGCTCTCCACCCCGACCGAGACCATGTACTTCATCGCCGACGC
CGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGATCCATCGTCCAGCACTCCCGCTCCGTTACCGACGCCGAGG
TCGTTGACTACGACAGCCGCCCCCAGCCCCCACCGC------AGCCCAAGAAGAGCGAGGCGAGTGAGCCGTCAGAGTAA
GATCACGGTGAACTCCGTC-ACCCTTCTCTCGATATGACTCTGTTGTATCAACTTATGTGATTGTGAATTCTTGTTTTTG
TTTCTTATTTATTGACT---TTGTGTATATTATTGACTGATGTCTAAGAATAATTGAGTTTAAGTGTATAGCTCTTTGAC
CCTTTGGATCGGTTGACATGTCCTAATTTCCGAAATTTCATGGTTGTCTCCTAATTCAGTGCTCTGTAAAGTTTATGCCT
CTTAGTTTCTGAATTTGTGACAAATTTTTATCGGGCAATTCTCTGTTTTGTTCATTTTGCTTATGACTGGAACATATTCG
GCTCAGAGTTCCAGGGGATTTCACCTTAACTGCCACCAATTTGTTGGTTCTTACTACAACATAAGCGCCGCACAGAAGAG
--TGTTGTATAGAGGGTCTTTTCACAATAAATAGCTCATTTTGGCAAGCAAAATGAATCATCATCCCACAATTATTTTCT
ATACGAAGGTAGACGGATATAGTTCAGTATTCCTGTGAAGGTTGTGTCATAGAGTTGCTATCATCATCCCACAATTATTT
TCTATACGAAGGTAGACGGATATAGTTCAGTATTCCTATGAAGGTTGTGTCATAGAGTTGCTATCCTAATTTATATGAGC
AACTCCAGTGGCAGCAGTTCAATGGAAGTTTTGAGTGCGACCAATGTCAGCTTGTCAAGCATTGTGTTTATTAGCAATCA
ACTTGAACAATCATACACTTAATTTTTTTTCCATCTGATGTTTGAAATGGAAAGTTT-GCCTTTATAAGATGCTGGAGTC
TAGAGTTGGTGTGGTGGTGCTGGGCTTTGGTGAGTACAGTGACCATTATCCATCATTATCCATTACTTATTGCACTTAAG
AGACTGGATTCGTCATCCTTGGTCAGTCGTGCGTAAACGCCAACTGGTACTCTTT-GACTGATTTTTGAAAGGCAC-GTG
ACTTAGCATGATCTTGAAAAC-GAACTTTGAACATTGATTCTTTTGACATTGTATTGTTCTTAGCTGGGATATCATAATC
ATGATGACACTCAAGT------------------ACAACTTTCAATCTTTCATTCTGAGGCTACATGCCTTGAAATAGTG
AGCGAAAAGAGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
-----------------------------------------S---------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------S---
-------------------------------S---------------S--------------------------------
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-------------------S------------------------------------------------------------
---------------S---S--------------------------------------------------S---------
----------------------------------------------S----------------S----S-----------
---------------S----------------S------------------------------SS-SSSS----------
------------------------------------------S-------------------------------------
-----------------------------------------------------------S---S----------------
S------------------------------S-S----------------------------------------------
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-----------------------------------S--------------------------------------------
----------------------------------------S-----------------S--S------------------
-------------------------------------------------------S----------S-------------
----------------S--------S----------------------------------------SS------------
---------S----------------------------------------------------------------------
--S---------
>forward_364
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------------------------TATAGAGCCCACCAGCCCTT------------------------------------
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>reverse_1830
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---------------------------------------------------------------------TCGGGTTGAGT
TCCAGAGGA-----------------------------------------------------------------------
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