Multiple sequence alignment - TraesCS1D01G276600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G276600 chr1D 100.000 3581 0 0 1 3581 373115075 373118655 0.000000e+00 6613
1 TraesCS1D01G276600 chr1D 73.874 333 55 20 500 819 485244943 485244630 1.760000e-18 104
2 TraesCS1D01G276600 chr1B 94.713 2875 110 12 196 3033 498062611 498065480 0.000000e+00 4429
3 TraesCS1D01G276600 chr1B 77.510 249 48 7 3152 3395 666073901 666073656 3.730000e-30 143
4 TraesCS1D01G276600 chr1A 93.935 2935 119 30 151 3033 472549483 472552410 0.000000e+00 4379
5 TraesCS1D01G276600 chr1A 82.723 191 25 6 575 763 497266870 497267054 2.860000e-36 163
6 TraesCS1D01G276600 chr1A 84.314 153 19 4 3254 3404 354626779 354626630 1.040000e-30 145
7 TraesCS1D01G276600 chr1A 91.892 74 6 0 3068 3141 472552415 472552488 1.760000e-18 104
8 TraesCS1D01G276600 chr1A 77.451 204 25 11 562 763 497272781 497272597 6.330000e-18 102
9 TraesCS1D01G276600 chr3A 83.333 1512 213 29 1073 2569 621515626 621517113 0.000000e+00 1360
10 TraesCS1D01G276600 chr3A 87.234 94 11 1 3167 3259 77798498 77798591 4.890000e-19 106
11 TraesCS1D01G276600 chr3B 83.333 1506 213 27 1073 2568 637336711 637335234 0.000000e+00 1356
12 TraesCS1D01G276600 chr3B 91.209 91 7 1 3171 3260 579122375 579122285 4.860000e-24 122
13 TraesCS1D01G276600 chr3D 82.387 1533 217 38 1073 2578 478062102 478060596 0.000000e+00 1286
14 TraesCS1D01G276600 chr3D 92.308 143 11 0 2 144 481918482 481918624 1.690000e-48 204
15 TraesCS1D01G276600 chr3D 91.954 87 6 1 3170 3255 395697807 395697721 1.750000e-23 121
16 TraesCS1D01G276600 chr3D 89.535 86 8 1 3171 3255 508385206 508385291 1.360000e-19 108
17 TraesCS1D01G276600 chr4D 74.184 1379 270 64 1182 2523 115543709 115542380 2.480000e-136 496
18 TraesCS1D01G276600 chr4D 89.726 146 15 0 2 147 126444862 126444717 1.700000e-43 187
19 TraesCS1D01G276600 chr4D 82.099 162 26 2 3235 3395 10986138 10985979 6.240000e-28 135
20 TraesCS1D01G276600 chr4A 74.255 1309 249 64 1184 2454 461354120 461355378 1.510000e-128 470
21 TraesCS1D01G276600 chr4A 83.117 154 24 2 3236 3389 556761736 556761887 4.820000e-29 139
22 TraesCS1D01G276600 chr4A 89.535 86 8 1 3171 3255 37781747 37781662 1.360000e-19 108
23 TraesCS1D01G276600 chr5D 78.025 405 52 20 412 787 387099338 387099734 1.670000e-53 220
24 TraesCS1D01G276600 chr6D 94.366 142 8 0 2 143 450359162 450359021 6.020000e-53 219
25 TraesCS1D01G276600 chr7B 92.466 146 8 1 2 147 682027700 682027558 4.690000e-49 206
26 TraesCS1D01G276600 chr7B 89.510 143 15 0 2 144 233586091 233585949 7.900000e-42 182
27 TraesCS1D01G276600 chr2B 77.500 360 61 15 2135 2481 755056113 755056465 7.840000e-47 198
28 TraesCS1D01G276600 chr2B 90.210 143 14 0 2 144 398193631 398193773 1.700000e-43 187
29 TraesCS1D01G276600 chr2D 89.726 146 14 1 2 147 363898698 363898554 6.110000e-43 185
30 TraesCS1D01G276600 chr2D 76.012 346 61 13 2135 2466 618531280 618530943 3.700000e-35 159
31 TraesCS1D01G276600 chr2D 86.620 142 17 1 3254 3395 336511276 336511137 4.790000e-34 156
32 TraesCS1D01G276600 chr2D 85.915 142 16 2 3254 3395 138701210 138701073 8.010000e-32 148
33 TraesCS1D01G276600 chr4B 89.041 146 16 0 2 147 538691325 538691180 7.900000e-42 182
34 TraesCS1D01G276600 chr4B 89.535 86 8 1 3171 3255 27604840 27604755 1.360000e-19 108
35 TraesCS1D01G276600 chr2A 89.189 148 11 2 2 144 685366480 685366627 2.840000e-41 180
36 TraesCS1D01G276600 chr5B 86.525 141 16 3 3254 3394 577082725 577082588 6.190000e-33 152
37 TraesCS1D01G276600 chr5B 85.211 142 19 1 3254 3395 316709127 316708988 1.040000e-30 145
38 TraesCS1D01G276600 chr5B 88.889 90 8 2 3168 3255 689943987 689944076 3.780000e-20 110
39 TraesCS1D01G276600 chr6A 75.477 367 57 17 420 758 614451741 614451380 8.010000e-32 148
40 TraesCS1D01G276600 chr6A 88.889 90 9 1 3169 3257 127870706 127870795 3.780000e-20 110
41 TraesCS1D01G276600 chr5A 85.211 142 19 1 3254 3395 206730656 206730795 1.040000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G276600 chr1D 373115075 373118655 3580 False 6613.0 6613 100.0000 1 3581 1 chr1D.!!$F1 3580
1 TraesCS1D01G276600 chr1B 498062611 498065480 2869 False 4429.0 4429 94.7130 196 3033 1 chr1B.!!$F1 2837
2 TraesCS1D01G276600 chr1A 472549483 472552488 3005 False 2241.5 4379 92.9135 151 3141 2 chr1A.!!$F2 2990
3 TraesCS1D01G276600 chr3A 621515626 621517113 1487 False 1360.0 1360 83.3330 1073 2569 1 chr3A.!!$F2 1496
4 TraesCS1D01G276600 chr3B 637335234 637336711 1477 True 1356.0 1356 83.3330 1073 2568 1 chr3B.!!$R2 1495
5 TraesCS1D01G276600 chr3D 478060596 478062102 1506 True 1286.0 1286 82.3870 1073 2578 1 chr3D.!!$R2 1505
6 TraesCS1D01G276600 chr4D 115542380 115543709 1329 True 496.0 496 74.1840 1182 2523 1 chr4D.!!$R2 1341
7 TraesCS1D01G276600 chr4A 461354120 461355378 1258 False 470.0 470 74.2550 1184 2454 1 chr4A.!!$F1 1270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.179127 CTCGAGAAGCCGCAGATCAA 60.179 55.0 6.58 0.0 0.0 2.57 F
124 125 0.458543 TCGAGAAGCCGCAGATCAAC 60.459 55.0 0.00 0.0 0.0 3.18 F
2009 2095 0.107752 GCCTTCTTCCTGCTCCTCTG 60.108 60.0 0.00 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 1550 1.006102 CAGTTCGGAGGCAACGACT 60.006 57.895 3.01 2.52 40.45 4.18 R
2334 2420 4.456806 GGCACGAACTGGTTGTCT 57.543 55.556 0.00 0.00 0.00 3.41 R
3521 3627 0.037303 AGTGACATGCAGAGGGTTGG 59.963 55.000 0.00 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.349886 CACTCGTTGCTAGAATTGAGGC 59.650 50.000 0.00 0.00 0.00 4.70
25 26 2.234908 ACTCGTTGCTAGAATTGAGGCT 59.765 45.455 0.00 0.00 0.00 4.58
26 27 3.447586 ACTCGTTGCTAGAATTGAGGCTA 59.552 43.478 0.00 0.00 0.00 3.93
27 28 4.046938 TCGTTGCTAGAATTGAGGCTAG 57.953 45.455 0.00 0.00 37.69 3.42
28 29 3.699538 TCGTTGCTAGAATTGAGGCTAGA 59.300 43.478 0.00 0.00 36.97 2.43
29 30 4.047822 CGTTGCTAGAATTGAGGCTAGAG 58.952 47.826 0.00 0.00 36.97 2.43
30 31 4.202060 CGTTGCTAGAATTGAGGCTAGAGA 60.202 45.833 0.00 0.00 36.97 3.10
31 32 5.508825 CGTTGCTAGAATTGAGGCTAGAGAT 60.509 44.000 0.00 0.00 36.97 2.75
32 33 5.465532 TGCTAGAATTGAGGCTAGAGATG 57.534 43.478 0.00 0.00 36.97 2.90
33 34 5.143369 TGCTAGAATTGAGGCTAGAGATGA 58.857 41.667 0.00 0.00 36.97 2.92
34 35 5.600069 TGCTAGAATTGAGGCTAGAGATGAA 59.400 40.000 0.00 0.00 36.97 2.57
35 36 6.098838 TGCTAGAATTGAGGCTAGAGATGAAA 59.901 38.462 0.00 0.00 36.97 2.69
36 37 6.423604 GCTAGAATTGAGGCTAGAGATGAAAC 59.576 42.308 0.00 0.00 36.97 2.78
37 38 6.558488 AGAATTGAGGCTAGAGATGAAACT 57.442 37.500 0.00 0.00 0.00 2.66
38 39 7.667575 AGAATTGAGGCTAGAGATGAAACTA 57.332 36.000 0.00 0.00 0.00 2.24
39 40 7.496747 AGAATTGAGGCTAGAGATGAAACTAC 58.503 38.462 0.00 0.00 0.00 2.73
40 41 6.798427 ATTGAGGCTAGAGATGAAACTACA 57.202 37.500 0.00 0.00 0.00 2.74
41 42 5.843673 TGAGGCTAGAGATGAAACTACAG 57.156 43.478 0.00 0.00 0.00 2.74
42 43 5.510430 TGAGGCTAGAGATGAAACTACAGA 58.490 41.667 0.00 0.00 0.00 3.41
43 44 6.132658 TGAGGCTAGAGATGAAACTACAGAT 58.867 40.000 0.00 0.00 0.00 2.90
44 45 6.040278 TGAGGCTAGAGATGAAACTACAGATG 59.960 42.308 0.00 0.00 0.00 2.90
45 46 6.132658 AGGCTAGAGATGAAACTACAGATGA 58.867 40.000 0.00 0.00 0.00 2.92
46 47 6.265196 AGGCTAGAGATGAAACTACAGATGAG 59.735 42.308 0.00 0.00 0.00 2.90
47 48 6.264292 GGCTAGAGATGAAACTACAGATGAGA 59.736 42.308 0.00 0.00 0.00 3.27
48 49 7.039784 GGCTAGAGATGAAACTACAGATGAGAT 60.040 40.741 0.00 0.00 0.00 2.75
49 50 8.023128 GCTAGAGATGAAACTACAGATGAGATC 58.977 40.741 0.00 0.00 0.00 2.75
50 51 7.894753 AGAGATGAAACTACAGATGAGATCA 57.105 36.000 0.00 0.00 0.00 2.92
51 52 7.944061 AGAGATGAAACTACAGATGAGATCAG 58.056 38.462 0.00 0.00 0.00 2.90
52 53 7.779326 AGAGATGAAACTACAGATGAGATCAGA 59.221 37.037 0.00 0.00 0.00 3.27
53 54 8.481492 AGATGAAACTACAGATGAGATCAGAT 57.519 34.615 0.00 0.00 0.00 2.90
54 55 8.361889 AGATGAAACTACAGATGAGATCAGATG 58.638 37.037 0.00 0.00 0.00 2.90
55 56 6.279123 TGAAACTACAGATGAGATCAGATGC 58.721 40.000 0.00 0.00 0.00 3.91
56 57 4.502171 ACTACAGATGAGATCAGATGCG 57.498 45.455 0.00 0.00 0.00 4.73
57 58 4.140536 ACTACAGATGAGATCAGATGCGA 58.859 43.478 0.00 0.00 0.00 5.10
58 59 4.582240 ACTACAGATGAGATCAGATGCGAA 59.418 41.667 0.00 0.00 0.00 4.70
59 60 3.979948 ACAGATGAGATCAGATGCGAAG 58.020 45.455 0.00 0.00 0.00 3.79
79 80 7.582435 CGAAGCAATGTCTACTTCTTTAGAA 57.418 36.000 0.00 0.00 38.10 2.10
80 81 8.190888 CGAAGCAATGTCTACTTCTTTAGAAT 57.809 34.615 0.00 0.00 38.10 2.40
81 82 8.324567 CGAAGCAATGTCTACTTCTTTAGAATC 58.675 37.037 0.00 0.00 38.10 2.52
82 83 7.763172 AGCAATGTCTACTTCTTTAGAATCG 57.237 36.000 0.00 0.00 33.01 3.34
83 84 7.548097 AGCAATGTCTACTTCTTTAGAATCGA 58.452 34.615 0.00 0.00 33.01 3.59
84 85 8.035394 AGCAATGTCTACTTCTTTAGAATCGAA 58.965 33.333 0.00 0.00 33.01 3.71
85 86 8.324567 GCAATGTCTACTTCTTTAGAATCGAAG 58.675 37.037 0.00 0.00 39.89 3.79
86 87 9.574458 CAATGTCTACTTCTTTAGAATCGAAGA 57.426 33.333 5.38 1.35 45.75 2.87
101 102 8.383318 AGAATCGAAGAAGAAAGAAATGTTGA 57.617 30.769 0.00 0.00 43.58 3.18
102 103 8.840321 AGAATCGAAGAAGAAAGAAATGTTGAA 58.160 29.630 0.00 0.00 43.58 2.69
103 104 9.111702 GAATCGAAGAAGAAAGAAATGTTGAAG 57.888 33.333 0.00 0.00 43.58 3.02
104 105 6.430451 TCGAAGAAGAAAGAAATGTTGAAGC 58.570 36.000 0.00 0.00 0.00 3.86
105 106 6.260936 TCGAAGAAGAAAGAAATGTTGAAGCT 59.739 34.615 0.00 0.00 0.00 3.74
106 107 6.576684 CGAAGAAGAAAGAAATGTTGAAGCTC 59.423 38.462 0.00 0.00 0.00 4.09
107 108 5.995055 AGAAGAAAGAAATGTTGAAGCTCG 58.005 37.500 0.00 0.00 0.00 5.03
108 109 5.760253 AGAAGAAAGAAATGTTGAAGCTCGA 59.240 36.000 0.00 0.00 0.00 4.04
109 110 5.604010 AGAAAGAAATGTTGAAGCTCGAG 57.396 39.130 8.45 8.45 0.00 4.04
110 111 5.300752 AGAAAGAAATGTTGAAGCTCGAGA 58.699 37.500 18.75 0.00 0.00 4.04
111 112 5.760253 AGAAAGAAATGTTGAAGCTCGAGAA 59.240 36.000 18.75 0.00 0.00 2.87
112 113 5.604010 AAGAAATGTTGAAGCTCGAGAAG 57.396 39.130 18.75 0.00 0.00 2.85
120 121 2.105930 GCTCGAGAAGCCGCAGAT 59.894 61.111 18.75 0.00 45.92 2.90
121 122 1.948635 GCTCGAGAAGCCGCAGATC 60.949 63.158 18.75 0.00 45.92 2.75
122 123 1.435105 CTCGAGAAGCCGCAGATCA 59.565 57.895 6.58 0.00 0.00 2.92
123 124 0.179127 CTCGAGAAGCCGCAGATCAA 60.179 55.000 6.58 0.00 0.00 2.57
124 125 0.458543 TCGAGAAGCCGCAGATCAAC 60.459 55.000 0.00 0.00 0.00 3.18
125 126 0.737367 CGAGAAGCCGCAGATCAACA 60.737 55.000 0.00 0.00 0.00 3.33
126 127 1.442769 GAGAAGCCGCAGATCAACAA 58.557 50.000 0.00 0.00 0.00 2.83
127 128 2.012673 GAGAAGCCGCAGATCAACAAT 58.987 47.619 0.00 0.00 0.00 2.71
128 129 1.741706 AGAAGCCGCAGATCAACAATG 59.258 47.619 0.00 0.00 0.00 2.82
129 130 1.739466 GAAGCCGCAGATCAACAATGA 59.261 47.619 0.00 0.00 40.57 2.57
130 131 1.825090 AGCCGCAGATCAACAATGAA 58.175 45.000 0.00 0.00 39.49 2.57
131 132 1.741706 AGCCGCAGATCAACAATGAAG 59.258 47.619 0.00 0.00 39.49 3.02
132 133 1.739466 GCCGCAGATCAACAATGAAGA 59.261 47.619 0.00 0.00 39.49 2.87
133 134 2.476854 GCCGCAGATCAACAATGAAGAC 60.477 50.000 0.00 0.00 39.49 3.01
134 135 2.743664 CCGCAGATCAACAATGAAGACA 59.256 45.455 0.00 0.00 39.49 3.41
135 136 3.376234 CCGCAGATCAACAATGAAGACAT 59.624 43.478 0.00 0.00 39.49 3.06
136 137 4.571984 CCGCAGATCAACAATGAAGACATA 59.428 41.667 0.00 0.00 39.49 2.29
137 138 5.277202 CCGCAGATCAACAATGAAGACATAG 60.277 44.000 0.00 0.00 39.49 2.23
138 139 5.521372 CGCAGATCAACAATGAAGACATAGA 59.479 40.000 0.00 0.00 39.49 1.98
139 140 6.292221 CGCAGATCAACAATGAAGACATAGAG 60.292 42.308 0.00 0.00 39.49 2.43
140 141 6.760298 GCAGATCAACAATGAAGACATAGAGA 59.240 38.462 0.00 0.00 39.49 3.10
141 142 7.279536 GCAGATCAACAATGAAGACATAGAGAA 59.720 37.037 0.00 0.00 39.49 2.87
142 143 8.819015 CAGATCAACAATGAAGACATAGAGAAG 58.181 37.037 0.00 0.00 39.49 2.85
143 144 8.756927 AGATCAACAATGAAGACATAGAGAAGA 58.243 33.333 0.00 0.00 39.49 2.87
144 145 9.376075 GATCAACAATGAAGACATAGAGAAGAA 57.624 33.333 0.00 0.00 39.49 2.52
145 146 9.730705 ATCAACAATGAAGACATAGAGAAGAAA 57.269 29.630 0.00 0.00 39.49 2.52
146 147 9.730705 TCAACAATGAAGACATAGAGAAGAAAT 57.269 29.630 0.00 0.00 35.50 2.17
147 148 9.770503 CAACAATGAAGACATAGAGAAGAAATG 57.229 33.333 0.00 0.00 35.50 2.32
148 149 7.983307 ACAATGAAGACATAGAGAAGAAATGC 58.017 34.615 0.00 0.00 35.50 3.56
149 150 7.066766 ACAATGAAGACATAGAGAAGAAATGCC 59.933 37.037 0.00 0.00 35.50 4.40
156 157 9.373450 AGACATAGAGAAGAAATGCCTTATAGA 57.627 33.333 0.00 0.00 0.00 1.98
205 206 9.672673 ATGGAAGAACAATTATTATATCCCTCG 57.327 33.333 0.00 0.00 0.00 4.63
323 334 3.284617 CAATGGTTGGATGATGCTGAGA 58.715 45.455 0.00 0.00 0.00 3.27
329 340 2.294979 TGGATGATGCTGAGATTGTGC 58.705 47.619 0.00 0.00 0.00 4.57
346 357 2.076863 GTGCGGAAGACAAGTAAGCAT 58.923 47.619 0.00 0.00 35.54 3.79
451 463 4.104383 TGTGCCTGAAATTTCTTCTCCT 57.896 40.909 18.64 0.00 0.00 3.69
453 465 2.821969 TGCCTGAAATTTCTTCTCCTGC 59.178 45.455 18.64 10.63 0.00 4.85
457 469 4.330250 CTGAAATTTCTTCTCCTGCCAGA 58.670 43.478 18.64 0.00 0.00 3.86
484 509 2.433444 TTCCCTTCTTCCTTCCCTCA 57.567 50.000 0.00 0.00 0.00 3.86
514 552 2.011222 CTCGTCGGAGAAGAACTAGCT 58.989 52.381 0.00 0.00 45.59 3.32
518 556 2.691011 GTCGGAGAAGAACTAGCTCCAT 59.309 50.000 17.47 0.00 46.74 3.41
532 570 6.194235 ACTAGCTCCATCATCTATCTTAGGG 58.806 44.000 0.00 0.00 0.00 3.53
564 602 5.036470 TGCCCCATTATCTATCTTAGGGA 57.964 43.478 0.00 0.00 36.96 4.20
585 623 1.229209 GGAGGATAGGGGATCGCCA 60.229 63.158 28.74 15.89 35.12 5.69
605 643 2.433970 CAAAGGTTTTCATGGGTGGTGT 59.566 45.455 0.00 0.00 0.00 4.16
783 827 4.593956 AGGAATGGAGGTTGAAGATGAAC 58.406 43.478 0.00 0.00 0.00 3.18
784 828 4.043310 AGGAATGGAGGTTGAAGATGAACA 59.957 41.667 0.00 0.00 0.00 3.18
1756 1827 1.340308 CCATGCATGTGGTCTGGAAGA 60.340 52.381 24.58 0.00 43.69 2.87
2009 2095 0.107752 GCCTTCTTCCTGCTCCTCTG 60.108 60.000 0.00 0.00 0.00 3.35
2663 2758 5.296780 TGGATCTATTCGTTTCATCTTTGCC 59.703 40.000 0.00 0.00 0.00 4.52
2745 2840 1.374758 GAGTCAAGACCAGCACCCG 60.375 63.158 0.00 0.00 0.00 5.28
2765 2860 2.031012 TTGGTGAGTGCGCTGGAG 59.969 61.111 3.44 0.00 0.00 3.86
2788 2883 6.146760 AGGGAATGAGTACCATCATAAGAGT 58.853 40.000 0.00 0.00 39.00 3.24
2830 2925 1.807573 CTTTCCTCGGCTGCGACTC 60.808 63.158 0.00 0.00 0.00 3.36
2838 2933 3.793144 GCTGCGACTCGGGCAAAG 61.793 66.667 0.00 0.00 40.39 2.77
2839 2934 2.357517 CTGCGACTCGGGCAAAGT 60.358 61.111 0.00 0.00 40.39 2.66
2996 3098 4.913924 GGACAGCATCGATTCAATTATTGC 59.086 41.667 0.00 0.00 0.00 3.56
3019 3125 2.639970 TGGTCGGCCATTGTTTGAG 58.360 52.632 3.51 0.00 40.46 3.02
3027 3133 2.295909 GGCCATTGTTTGAGTTGCAGTA 59.704 45.455 0.00 0.00 0.00 2.74
3028 3134 3.568538 GCCATTGTTTGAGTTGCAGTAG 58.431 45.455 0.00 0.00 0.00 2.57
3029 3135 3.004734 GCCATTGTTTGAGTTGCAGTAGT 59.995 43.478 0.00 0.00 0.00 2.73
3030 3136 4.215399 GCCATTGTTTGAGTTGCAGTAGTA 59.785 41.667 0.00 0.00 0.00 1.82
3031 3137 5.689819 CCATTGTTTGAGTTGCAGTAGTAC 58.310 41.667 0.00 0.00 0.00 2.73
3032 3138 5.470098 CCATTGTTTGAGTTGCAGTAGTACT 59.530 40.000 0.00 0.00 0.00 2.73
3107 3213 0.593128 GAGAATTGTGCGTTGCCAGT 59.407 50.000 0.00 0.00 0.00 4.00
3113 3219 0.953471 TGTGCGTTGCCAGTGGATAC 60.953 55.000 15.20 8.70 0.00 2.24
3141 3247 5.178061 AGCGTGTGAATGAGATGATAAACA 58.822 37.500 0.00 0.00 0.00 2.83
3142 3248 5.643348 AGCGTGTGAATGAGATGATAAACAA 59.357 36.000 0.00 0.00 0.00 2.83
3143 3249 6.149308 AGCGTGTGAATGAGATGATAAACAAA 59.851 34.615 0.00 0.00 0.00 2.83
3144 3250 6.467047 GCGTGTGAATGAGATGATAAACAAAG 59.533 38.462 0.00 0.00 0.00 2.77
3145 3251 7.521529 CGTGTGAATGAGATGATAAACAAAGT 58.478 34.615 0.00 0.00 0.00 2.66
3146 3252 7.689812 CGTGTGAATGAGATGATAAACAAAGTC 59.310 37.037 0.00 0.00 0.00 3.01
3147 3253 8.725148 GTGTGAATGAGATGATAAACAAAGTCT 58.275 33.333 0.00 0.00 0.00 3.24
3148 3254 8.939929 TGTGAATGAGATGATAAACAAAGTCTC 58.060 33.333 0.00 0.00 34.56 3.36
3149 3255 8.939929 GTGAATGAGATGATAAACAAAGTCTCA 58.060 33.333 5.48 5.48 42.48 3.27
3150 3256 9.676861 TGAATGAGATGATAAACAAAGTCTCAT 57.323 29.630 9.24 9.24 46.18 2.90
3157 3263 9.255304 GATGATAAACAAAGTCTCATCTACTCC 57.745 37.037 0.00 0.00 39.27 3.85
3158 3264 7.556844 TGATAAACAAAGTCTCATCTACTCCC 58.443 38.462 0.00 0.00 0.00 4.30
3159 3265 4.828072 AACAAAGTCTCATCTACTCCCC 57.172 45.455 0.00 0.00 0.00 4.81
3160 3266 3.108376 ACAAAGTCTCATCTACTCCCCC 58.892 50.000 0.00 0.00 0.00 5.40
3161 3267 2.074729 AAGTCTCATCTACTCCCCCG 57.925 55.000 0.00 0.00 0.00 5.73
3162 3268 0.927767 AGTCTCATCTACTCCCCCGT 59.072 55.000 0.00 0.00 0.00 5.28
3163 3269 1.288335 AGTCTCATCTACTCCCCCGTT 59.712 52.381 0.00 0.00 0.00 4.44
3164 3270 1.682323 GTCTCATCTACTCCCCCGTTC 59.318 57.143 0.00 0.00 0.00 3.95
3165 3271 1.569548 TCTCATCTACTCCCCCGTTCT 59.430 52.381 0.00 0.00 0.00 3.01
3166 3272 2.024273 TCTCATCTACTCCCCCGTTCTT 60.024 50.000 0.00 0.00 0.00 2.52
3167 3273 3.203710 TCTCATCTACTCCCCCGTTCTTA 59.796 47.826 0.00 0.00 0.00 2.10
3168 3274 3.958798 CTCATCTACTCCCCCGTTCTTAA 59.041 47.826 0.00 0.00 0.00 1.85
3169 3275 4.355549 TCATCTACTCCCCCGTTCTTAAA 58.644 43.478 0.00 0.00 0.00 1.52
3170 3276 4.966805 TCATCTACTCCCCCGTTCTTAAAT 59.033 41.667 0.00 0.00 0.00 1.40
3171 3277 6.138263 TCATCTACTCCCCCGTTCTTAAATA 58.862 40.000 0.00 0.00 0.00 1.40
3172 3278 5.859205 TCTACTCCCCCGTTCTTAAATAC 57.141 43.478 0.00 0.00 0.00 1.89
3173 3279 5.522641 TCTACTCCCCCGTTCTTAAATACT 58.477 41.667 0.00 0.00 0.00 2.12
3174 3280 4.750021 ACTCCCCCGTTCTTAAATACTC 57.250 45.455 0.00 0.00 0.00 2.59
3175 3281 3.453717 ACTCCCCCGTTCTTAAATACTCC 59.546 47.826 0.00 0.00 0.00 3.85
3176 3282 2.773661 TCCCCCGTTCTTAAATACTCCC 59.226 50.000 0.00 0.00 0.00 4.30
3177 3283 2.775960 CCCCCGTTCTTAAATACTCCCT 59.224 50.000 0.00 0.00 0.00 4.20
3178 3284 3.181457 CCCCCGTTCTTAAATACTCCCTC 60.181 52.174 0.00 0.00 0.00 4.30
3179 3285 3.181457 CCCCGTTCTTAAATACTCCCTCC 60.181 52.174 0.00 0.00 0.00 4.30
3180 3286 3.453353 CCCGTTCTTAAATACTCCCTCCA 59.547 47.826 0.00 0.00 0.00 3.86
3181 3287 4.102681 CCCGTTCTTAAATACTCCCTCCAT 59.897 45.833 0.00 0.00 0.00 3.41
3182 3288 5.397559 CCCGTTCTTAAATACTCCCTCCATT 60.398 44.000 0.00 0.00 0.00 3.16
3183 3289 5.758784 CCGTTCTTAAATACTCCCTCCATTC 59.241 44.000 0.00 0.00 0.00 2.67
3184 3290 5.758784 CGTTCTTAAATACTCCCTCCATTCC 59.241 44.000 0.00 0.00 0.00 3.01
3185 3291 6.631766 CGTTCTTAAATACTCCCTCCATTCCA 60.632 42.308 0.00 0.00 0.00 3.53
3186 3292 6.901615 TCTTAAATACTCCCTCCATTCCAA 57.098 37.500 0.00 0.00 0.00 3.53
3187 3293 7.278724 TCTTAAATACTCCCTCCATTCCAAA 57.721 36.000 0.00 0.00 0.00 3.28
3188 3294 7.704727 TCTTAAATACTCCCTCCATTCCAAAA 58.295 34.615 0.00 0.00 0.00 2.44
3189 3295 8.343787 TCTTAAATACTCCCTCCATTCCAAAAT 58.656 33.333 0.00 0.00 0.00 1.82
3190 3296 9.640952 CTTAAATACTCCCTCCATTCCAAAATA 57.359 33.333 0.00 0.00 0.00 1.40
3191 3297 9.998752 TTAAATACTCCCTCCATTCCAAAATAA 57.001 29.630 0.00 0.00 0.00 1.40
3192 3298 8.909423 AAATACTCCCTCCATTCCAAAATAAA 57.091 30.769 0.00 0.00 0.00 1.40
3193 3299 9.506042 AAATACTCCCTCCATTCCAAAATAAAT 57.494 29.630 0.00 0.00 0.00 1.40
3194 3300 6.796785 ACTCCCTCCATTCCAAAATAAATG 57.203 37.500 0.00 0.00 33.57 2.32
3195 3301 6.502138 ACTCCCTCCATTCCAAAATAAATGA 58.498 36.000 0.00 0.00 35.35 2.57
3196 3302 7.134842 ACTCCCTCCATTCCAAAATAAATGAT 58.865 34.615 0.00 0.00 35.35 2.45
3197 3303 7.624879 ACTCCCTCCATTCCAAAATAAATGATT 59.375 33.333 0.00 0.00 35.35 2.57
3198 3304 8.391305 TCCCTCCATTCCAAAATAAATGATTT 57.609 30.769 0.00 0.00 39.56 2.17
3199 3305 9.499369 TCCCTCCATTCCAAAATAAATGATTTA 57.501 29.630 0.00 0.00 36.71 1.40
3243 3349 8.842358 ATAAAGTTGAGTCGTCTATTTTGGAA 57.158 30.769 0.00 0.00 0.00 3.53
3244 3350 6.541111 AAGTTGAGTCGTCTATTTTGGAAC 57.459 37.500 0.00 0.00 0.00 3.62
3245 3351 4.684703 AGTTGAGTCGTCTATTTTGGAACG 59.315 41.667 0.00 0.00 0.00 3.95
3246 3352 3.581755 TGAGTCGTCTATTTTGGAACGG 58.418 45.455 0.00 0.00 0.00 4.44
3247 3353 3.256383 TGAGTCGTCTATTTTGGAACGGA 59.744 43.478 0.00 0.00 0.00 4.69
3248 3354 3.846360 AGTCGTCTATTTTGGAACGGAG 58.154 45.455 0.00 0.00 0.00 4.63
3250 3356 3.367025 GTCGTCTATTTTGGAACGGAGTG 59.633 47.826 0.00 0.00 45.00 3.51
3251 3357 3.256383 TCGTCTATTTTGGAACGGAGTGA 59.744 43.478 0.00 0.00 45.00 3.41
3252 3358 3.612860 CGTCTATTTTGGAACGGAGTGAG 59.387 47.826 0.00 0.00 45.00 3.51
3253 3359 4.566987 GTCTATTTTGGAACGGAGTGAGT 58.433 43.478 0.00 0.00 45.00 3.41
3254 3360 5.620654 CGTCTATTTTGGAACGGAGTGAGTA 60.621 44.000 0.00 0.00 45.00 2.59
3255 3361 6.338937 GTCTATTTTGGAACGGAGTGAGTAT 58.661 40.000 0.00 0.00 45.00 2.12
3256 3362 7.486647 GTCTATTTTGGAACGGAGTGAGTATA 58.513 38.462 0.00 0.00 45.00 1.47
3257 3363 7.977853 GTCTATTTTGGAACGGAGTGAGTATAA 59.022 37.037 0.00 0.00 45.00 0.98
3258 3364 8.195436 TCTATTTTGGAACGGAGTGAGTATAAG 58.805 37.037 0.00 0.00 45.00 1.73
3259 3365 5.988310 TTTGGAACGGAGTGAGTATAAGA 57.012 39.130 0.00 0.00 45.00 2.10
3260 3366 4.978083 TGGAACGGAGTGAGTATAAGAC 57.022 45.455 0.00 0.00 45.00 3.01
3261 3367 4.338012 TGGAACGGAGTGAGTATAAGACA 58.662 43.478 0.00 0.00 45.00 3.41
3262 3368 4.954202 TGGAACGGAGTGAGTATAAGACAT 59.046 41.667 0.00 0.00 45.00 3.06
3263 3369 5.421056 TGGAACGGAGTGAGTATAAGACATT 59.579 40.000 0.00 0.00 45.00 2.71
3264 3370 6.070995 TGGAACGGAGTGAGTATAAGACATTT 60.071 38.462 0.00 0.00 45.00 2.32
3265 3371 6.817140 GGAACGGAGTGAGTATAAGACATTTT 59.183 38.462 0.00 0.00 45.00 1.82
3266 3372 7.977853 GGAACGGAGTGAGTATAAGACATTTTA 59.022 37.037 0.00 0.00 45.00 1.52
3267 3373 8.928270 AACGGAGTGAGTATAAGACATTTTAG 57.072 34.615 0.00 0.00 45.00 1.85
3268 3374 8.289939 ACGGAGTGAGTATAAGACATTTTAGA 57.710 34.615 0.00 0.00 42.51 2.10
3269 3375 8.407064 ACGGAGTGAGTATAAGACATTTTAGAG 58.593 37.037 0.00 0.00 42.51 2.43
3270 3376 8.622157 CGGAGTGAGTATAAGACATTTTAGAGA 58.378 37.037 0.00 0.00 0.00 3.10
3308 3414 9.890629 ACTACATATAAAGCAGAAAATGAGTGA 57.109 29.630 0.00 0.00 0.00 3.41
3315 3421 7.750229 AAAGCAGAAAATGAGTGAATCTACA 57.250 32.000 0.00 0.00 0.00 2.74
3316 3422 6.734104 AGCAGAAAATGAGTGAATCTACAC 57.266 37.500 0.00 0.00 40.60 2.90
3330 3436 8.958506 AGTGAATCTACACTCTAAAATACGACT 58.041 33.333 0.00 0.00 46.36 4.18
3348 3454 6.522233 ACGACTATACGTATCTGTGTGTAG 57.478 41.667 12.24 3.79 44.72 2.74
3349 3455 6.045318 ACGACTATACGTATCTGTGTGTAGT 58.955 40.000 12.24 7.20 43.07 2.73
3350 3456 6.536582 ACGACTATACGTATCTGTGTGTAGTT 59.463 38.462 12.24 0.00 41.29 2.24
3351 3457 7.065085 ACGACTATACGTATCTGTGTGTAGTTT 59.935 37.037 12.24 0.00 41.29 2.66
3352 3458 8.542953 CGACTATACGTATCTGTGTGTAGTTTA 58.457 37.037 12.24 0.00 41.29 2.01
3414 3520 4.781934 GGATAACTCCTGCACTATTTGGT 58.218 43.478 0.00 0.00 38.65 3.67
3415 3521 5.193679 GGATAACTCCTGCACTATTTGGTT 58.806 41.667 0.00 0.00 38.65 3.67
3416 3522 6.354130 GGATAACTCCTGCACTATTTGGTTA 58.646 40.000 0.00 0.00 38.65 2.85
3417 3523 6.826741 GGATAACTCCTGCACTATTTGGTTAA 59.173 38.462 0.00 0.00 38.65 2.01
3418 3524 7.502561 GGATAACTCCTGCACTATTTGGTTAAT 59.497 37.037 0.00 0.00 38.65 1.40
3419 3525 6.759497 AACTCCTGCACTATTTGGTTAATC 57.241 37.500 0.00 0.00 0.00 1.75
3420 3526 6.067217 ACTCCTGCACTATTTGGTTAATCT 57.933 37.500 0.00 0.00 0.00 2.40
3421 3527 6.485171 ACTCCTGCACTATTTGGTTAATCTT 58.515 36.000 0.00 0.00 0.00 2.40
3422 3528 7.630082 ACTCCTGCACTATTTGGTTAATCTTA 58.370 34.615 0.00 0.00 0.00 2.10
3423 3529 8.275040 ACTCCTGCACTATTTGGTTAATCTTAT 58.725 33.333 0.00 0.00 0.00 1.73
3424 3530 9.125026 CTCCTGCACTATTTGGTTAATCTTATT 57.875 33.333 0.00 0.00 0.00 1.40
3486 3592 9.939802 TCTATTTTTGAGTTAGGGTAAAGTCTC 57.060 33.333 0.00 0.00 31.32 3.36
3487 3593 7.997773 ATTTTTGAGTTAGGGTAAAGTCTCC 57.002 36.000 0.00 0.00 31.32 3.71
3488 3594 5.494390 TTTGAGTTAGGGTAAAGTCTCCC 57.506 43.478 0.00 0.00 43.71 4.30
3489 3595 3.447950 TGAGTTAGGGTAAAGTCTCCCC 58.552 50.000 0.00 0.00 44.40 4.81
3491 3597 3.705579 GAGTTAGGGTAAAGTCTCCCCTC 59.294 52.174 7.76 0.00 45.98 4.30
3492 3598 3.340357 AGTTAGGGTAAAGTCTCCCCTCT 59.660 47.826 7.76 0.00 45.98 3.69
3493 3599 4.547427 AGTTAGGGTAAAGTCTCCCCTCTA 59.453 45.833 7.76 0.00 45.98 2.43
3494 3600 5.017106 AGTTAGGGTAAAGTCTCCCCTCTAA 59.983 44.000 7.76 0.00 45.98 2.10
3495 3601 3.996957 AGGGTAAAGTCTCCCCTCTAAG 58.003 50.000 0.00 0.00 45.98 2.18
3496 3602 2.435069 GGGTAAAGTCTCCCCTCTAAGC 59.565 54.545 0.00 0.00 37.89 3.09
3497 3603 3.376636 GGTAAAGTCTCCCCTCTAAGCT 58.623 50.000 0.00 0.00 0.00 3.74
3498 3604 3.775866 GGTAAAGTCTCCCCTCTAAGCTT 59.224 47.826 3.48 3.48 0.00 3.74
3499 3605 3.990959 AAAGTCTCCCCTCTAAGCTTG 57.009 47.619 9.86 0.00 0.00 4.01
3500 3606 2.930109 AGTCTCCCCTCTAAGCTTGA 57.070 50.000 9.86 3.84 0.00 3.02
3501 3607 2.462723 AGTCTCCCCTCTAAGCTTGAC 58.537 52.381 9.86 5.20 0.00 3.18
3502 3608 1.483004 GTCTCCCCTCTAAGCTTGACC 59.517 57.143 9.86 0.00 0.00 4.02
3503 3609 1.078823 TCTCCCCTCTAAGCTTGACCA 59.921 52.381 9.86 0.00 0.00 4.02
3504 3610 1.484240 CTCCCCTCTAAGCTTGACCAG 59.516 57.143 9.86 0.00 0.00 4.00
3525 3631 4.794439 GCCCGCGGATTTGCCAAC 62.794 66.667 30.73 0.00 35.94 3.77
3526 3632 4.128388 CCCGCGGATTTGCCAACC 62.128 66.667 30.73 0.00 35.94 3.77
3527 3633 4.128388 CCGCGGATTTGCCAACCC 62.128 66.667 24.07 0.00 35.94 4.11
3528 3634 3.061848 CGCGGATTTGCCAACCCT 61.062 61.111 0.00 0.00 35.94 4.34
3529 3635 2.885113 GCGGATTTGCCAACCCTC 59.115 61.111 0.00 0.00 35.94 4.30
3530 3636 1.678970 GCGGATTTGCCAACCCTCT 60.679 57.895 0.00 0.00 35.94 3.69
3531 3637 1.937546 GCGGATTTGCCAACCCTCTG 61.938 60.000 0.00 0.00 35.94 3.35
3532 3638 1.893062 GGATTTGCCAACCCTCTGC 59.107 57.895 0.00 0.00 36.34 4.26
3533 3639 0.899717 GGATTTGCCAACCCTCTGCA 60.900 55.000 0.00 0.00 36.34 4.41
3534 3640 1.188863 GATTTGCCAACCCTCTGCAT 58.811 50.000 0.00 0.00 34.51 3.96
3535 3641 0.899720 ATTTGCCAACCCTCTGCATG 59.100 50.000 0.00 0.00 34.51 4.06
3536 3642 0.469705 TTTGCCAACCCTCTGCATGT 60.470 50.000 0.00 0.00 34.51 3.21
3537 3643 0.895100 TTGCCAACCCTCTGCATGTC 60.895 55.000 0.00 0.00 34.51 3.06
3538 3644 1.303561 GCCAACCCTCTGCATGTCA 60.304 57.895 0.00 0.00 0.00 3.58
3539 3645 1.589716 GCCAACCCTCTGCATGTCAC 61.590 60.000 0.00 0.00 0.00 3.67
3540 3646 0.037303 CCAACCCTCTGCATGTCACT 59.963 55.000 0.00 0.00 0.00 3.41
3541 3647 1.546323 CCAACCCTCTGCATGTCACTT 60.546 52.381 0.00 0.00 0.00 3.16
3542 3648 2.233271 CAACCCTCTGCATGTCACTTT 58.767 47.619 0.00 0.00 0.00 2.66
3543 3649 1.901591 ACCCTCTGCATGTCACTTTG 58.098 50.000 0.00 0.00 0.00 2.77
3544 3650 1.171308 CCCTCTGCATGTCACTTTGG 58.829 55.000 0.00 0.00 0.00 3.28
3545 3651 1.546323 CCCTCTGCATGTCACTTTGGT 60.546 52.381 0.00 0.00 0.00 3.67
3546 3652 1.538512 CCTCTGCATGTCACTTTGGTG 59.461 52.381 0.00 0.00 44.23 4.17
3547 3653 1.538512 CTCTGCATGTCACTTTGGTGG 59.461 52.381 0.00 0.00 43.17 4.61
3549 3655 1.290009 GCATGTCACTTTGGTGGCC 59.710 57.895 0.00 0.00 46.47 5.36
3550 3656 1.580942 CATGTCACTTTGGTGGCCG 59.419 57.895 0.00 0.00 46.47 6.13
3551 3657 1.603455 ATGTCACTTTGGTGGCCGG 60.603 57.895 0.00 0.00 46.47 6.13
3552 3658 2.203294 GTCACTTTGGTGGCCGGT 60.203 61.111 1.90 0.00 41.75 5.28
3553 3659 2.203280 TCACTTTGGTGGCCGGTG 60.203 61.111 1.90 0.39 43.17 4.94
3554 3660 3.294493 CACTTTGGTGGCCGGTGG 61.294 66.667 1.90 0.00 39.59 4.61
3555 3661 4.596585 ACTTTGGTGGCCGGTGGG 62.597 66.667 1.90 0.00 0.00 4.61
3556 3662 4.596585 CTTTGGTGGCCGGTGGGT 62.597 66.667 1.90 0.00 34.97 4.51
3557 3663 4.904590 TTTGGTGGCCGGTGGGTG 62.905 66.667 1.90 0.00 34.97 4.61
3566 3672 3.691342 CGGTGGGTGCGAGGAGAA 61.691 66.667 0.00 0.00 0.00 2.87
3567 3673 2.990479 GGTGGGTGCGAGGAGAAT 59.010 61.111 0.00 0.00 0.00 2.40
3568 3674 1.299976 GGTGGGTGCGAGGAGAATT 59.700 57.895 0.00 0.00 0.00 2.17
3569 3675 0.744771 GGTGGGTGCGAGGAGAATTC 60.745 60.000 0.00 0.00 0.00 2.17
3570 3676 0.250513 GTGGGTGCGAGGAGAATTCT 59.749 55.000 7.95 7.95 0.00 2.40
3571 3677 0.250234 TGGGTGCGAGGAGAATTCTG 59.750 55.000 14.00 0.00 0.00 3.02
3572 3678 0.462759 GGGTGCGAGGAGAATTCTGG 60.463 60.000 14.00 0.44 0.00 3.86
3573 3679 0.250513 GGTGCGAGGAGAATTCTGGT 59.749 55.000 14.00 0.00 0.00 4.00
3574 3680 1.363744 GTGCGAGGAGAATTCTGGTG 58.636 55.000 14.00 1.01 0.00 4.17
3575 3681 0.976641 TGCGAGGAGAATTCTGGTGT 59.023 50.000 14.00 0.00 0.00 4.16
3576 3682 1.066858 TGCGAGGAGAATTCTGGTGTC 60.067 52.381 14.00 3.03 0.00 3.67
3577 3683 1.205893 GCGAGGAGAATTCTGGTGTCT 59.794 52.381 14.00 2.38 0.00 3.41
3578 3684 2.737039 GCGAGGAGAATTCTGGTGTCTC 60.737 54.545 14.00 10.18 37.63 3.36
3579 3685 2.757868 CGAGGAGAATTCTGGTGTCTCT 59.242 50.000 14.00 0.00 38.29 3.10
3580 3686 3.428725 CGAGGAGAATTCTGGTGTCTCTG 60.429 52.174 14.00 5.24 38.29 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.898705 AGCCTCAATTCTAGCAACGAG 58.101 47.619 0.00 0.00 0.00 4.18
6 7 3.699538 TCTAGCCTCAATTCTAGCAACGA 59.300 43.478 0.00 0.00 33.94 3.85
8 9 5.269505 TCTCTAGCCTCAATTCTAGCAAC 57.730 43.478 0.00 0.00 33.94 4.17
10 11 5.143369 TCATCTCTAGCCTCAATTCTAGCA 58.857 41.667 0.00 0.00 33.94 3.49
11 12 5.720371 TCATCTCTAGCCTCAATTCTAGC 57.280 43.478 0.00 0.00 33.94 3.42
12 13 7.725251 AGTTTCATCTCTAGCCTCAATTCTAG 58.275 38.462 0.00 0.00 34.94 2.43
13 14 7.667575 AGTTTCATCTCTAGCCTCAATTCTA 57.332 36.000 0.00 0.00 0.00 2.10
14 15 6.558488 AGTTTCATCTCTAGCCTCAATTCT 57.442 37.500 0.00 0.00 0.00 2.40
15 16 7.268586 TGTAGTTTCATCTCTAGCCTCAATTC 58.731 38.462 0.00 0.00 0.00 2.17
16 17 7.124901 TCTGTAGTTTCATCTCTAGCCTCAATT 59.875 37.037 0.00 0.00 0.00 2.32
17 18 6.609212 TCTGTAGTTTCATCTCTAGCCTCAAT 59.391 38.462 0.00 0.00 0.00 2.57
18 19 5.952347 TCTGTAGTTTCATCTCTAGCCTCAA 59.048 40.000 0.00 0.00 0.00 3.02
19 20 5.510430 TCTGTAGTTTCATCTCTAGCCTCA 58.490 41.667 0.00 0.00 0.00 3.86
20 21 6.264292 TCATCTGTAGTTTCATCTCTAGCCTC 59.736 42.308 0.00 0.00 0.00 4.70
21 22 6.132658 TCATCTGTAGTTTCATCTCTAGCCT 58.867 40.000 0.00 0.00 0.00 4.58
22 23 6.264292 TCTCATCTGTAGTTTCATCTCTAGCC 59.736 42.308 0.00 0.00 0.00 3.93
23 24 7.270757 TCTCATCTGTAGTTTCATCTCTAGC 57.729 40.000 0.00 0.00 0.00 3.42
24 25 9.065798 TGATCTCATCTGTAGTTTCATCTCTAG 57.934 37.037 0.00 0.00 0.00 2.43
25 26 8.986929 TGATCTCATCTGTAGTTTCATCTCTA 57.013 34.615 0.00 0.00 0.00 2.43
26 27 7.779326 TCTGATCTCATCTGTAGTTTCATCTCT 59.221 37.037 0.00 0.00 0.00 3.10
27 28 7.939782 TCTGATCTCATCTGTAGTTTCATCTC 58.060 38.462 0.00 0.00 0.00 2.75
28 29 7.894753 TCTGATCTCATCTGTAGTTTCATCT 57.105 36.000 0.00 0.00 0.00 2.90
29 30 7.116662 GCATCTGATCTCATCTGTAGTTTCATC 59.883 40.741 0.00 0.00 0.00 2.92
30 31 6.930164 GCATCTGATCTCATCTGTAGTTTCAT 59.070 38.462 0.00 0.00 0.00 2.57
31 32 6.279123 GCATCTGATCTCATCTGTAGTTTCA 58.721 40.000 0.00 0.00 0.00 2.69
32 33 5.401972 CGCATCTGATCTCATCTGTAGTTTC 59.598 44.000 0.00 0.00 0.00 2.78
33 34 5.068329 TCGCATCTGATCTCATCTGTAGTTT 59.932 40.000 0.00 0.00 0.00 2.66
34 35 4.582240 TCGCATCTGATCTCATCTGTAGTT 59.418 41.667 0.00 0.00 0.00 2.24
35 36 4.140536 TCGCATCTGATCTCATCTGTAGT 58.859 43.478 0.00 0.00 0.00 2.73
36 37 4.762956 TCGCATCTGATCTCATCTGTAG 57.237 45.455 0.00 0.00 0.00 2.74
37 38 4.558296 GCTTCGCATCTGATCTCATCTGTA 60.558 45.833 0.00 0.00 0.00 2.74
38 39 3.799574 GCTTCGCATCTGATCTCATCTGT 60.800 47.826 0.00 0.00 0.00 3.41
39 40 2.732500 GCTTCGCATCTGATCTCATCTG 59.267 50.000 0.00 0.00 0.00 2.90
40 41 2.364647 TGCTTCGCATCTGATCTCATCT 59.635 45.455 0.00 0.00 31.71 2.90
41 42 2.752121 TGCTTCGCATCTGATCTCATC 58.248 47.619 0.00 0.00 31.71 2.92
42 43 2.904697 TGCTTCGCATCTGATCTCAT 57.095 45.000 0.00 0.00 31.71 2.90
43 44 2.678471 TTGCTTCGCATCTGATCTCA 57.322 45.000 0.00 0.00 38.76 3.27
44 45 2.871022 ACATTGCTTCGCATCTGATCTC 59.129 45.455 0.00 0.00 38.76 2.75
45 46 2.871022 GACATTGCTTCGCATCTGATCT 59.129 45.455 0.00 0.00 38.76 2.75
46 47 2.871022 AGACATTGCTTCGCATCTGATC 59.129 45.455 6.09 0.00 38.76 2.92
47 48 2.915349 AGACATTGCTTCGCATCTGAT 58.085 42.857 6.09 0.00 38.76 2.90
48 49 2.391616 AGACATTGCTTCGCATCTGA 57.608 45.000 6.09 0.00 38.76 3.27
49 50 3.193263 AGTAGACATTGCTTCGCATCTG 58.807 45.455 1.82 0.61 38.76 2.90
50 51 3.533606 AGTAGACATTGCTTCGCATCT 57.466 42.857 0.00 0.00 38.76 2.90
51 52 4.188948 GAAGTAGACATTGCTTCGCATC 57.811 45.455 0.00 0.00 38.48 3.91
56 57 8.324567 CGATTCTAAAGAAGTAGACATTGCTTC 58.675 37.037 0.00 0.00 45.62 3.86
57 58 8.035394 TCGATTCTAAAGAAGTAGACATTGCTT 58.965 33.333 0.00 0.00 37.48 3.91
58 59 7.548097 TCGATTCTAAAGAAGTAGACATTGCT 58.452 34.615 0.00 0.00 37.48 3.91
59 60 7.757097 TCGATTCTAAAGAAGTAGACATTGC 57.243 36.000 0.00 0.00 37.48 3.56
60 61 9.574458 TCTTCGATTCTAAAGAAGTAGACATTG 57.426 33.333 0.00 0.00 41.36 2.82
62 63 9.796120 CTTCTTCGATTCTAAAGAAGTAGACAT 57.204 33.333 19.93 0.00 46.96 3.06
75 76 9.489084 TCAACATTTCTTTCTTCTTCGATTCTA 57.511 29.630 0.00 0.00 0.00 2.10
76 77 8.383318 TCAACATTTCTTTCTTCTTCGATTCT 57.617 30.769 0.00 0.00 0.00 2.40
77 78 9.111702 CTTCAACATTTCTTTCTTCTTCGATTC 57.888 33.333 0.00 0.00 0.00 2.52
78 79 7.592903 GCTTCAACATTTCTTTCTTCTTCGATT 59.407 33.333 0.00 0.00 0.00 3.34
79 80 7.040823 AGCTTCAACATTTCTTTCTTCTTCGAT 60.041 33.333 0.00 0.00 0.00 3.59
80 81 6.260936 AGCTTCAACATTTCTTTCTTCTTCGA 59.739 34.615 0.00 0.00 0.00 3.71
81 82 6.433766 AGCTTCAACATTTCTTTCTTCTTCG 58.566 36.000 0.00 0.00 0.00 3.79
82 83 6.576684 CGAGCTTCAACATTTCTTTCTTCTTC 59.423 38.462 0.00 0.00 0.00 2.87
83 84 6.260936 TCGAGCTTCAACATTTCTTTCTTCTT 59.739 34.615 0.00 0.00 0.00 2.52
84 85 5.760253 TCGAGCTTCAACATTTCTTTCTTCT 59.240 36.000 0.00 0.00 0.00 2.85
85 86 5.990408 TCGAGCTTCAACATTTCTTTCTTC 58.010 37.500 0.00 0.00 0.00 2.87
86 87 5.760253 TCTCGAGCTTCAACATTTCTTTCTT 59.240 36.000 7.81 0.00 0.00 2.52
87 88 5.300752 TCTCGAGCTTCAACATTTCTTTCT 58.699 37.500 7.81 0.00 0.00 2.52
88 89 5.597813 TCTCGAGCTTCAACATTTCTTTC 57.402 39.130 7.81 0.00 0.00 2.62
89 90 5.995055 CTTCTCGAGCTTCAACATTTCTTT 58.005 37.500 7.81 0.00 0.00 2.52
90 91 5.604010 CTTCTCGAGCTTCAACATTTCTT 57.396 39.130 7.81 0.00 0.00 2.52
104 105 0.179127 TTGATCTGCGGCTTCTCGAG 60.179 55.000 5.93 5.93 0.00 4.04
105 106 0.458543 GTTGATCTGCGGCTTCTCGA 60.459 55.000 0.00 0.00 0.00 4.04
106 107 0.737367 TGTTGATCTGCGGCTTCTCG 60.737 55.000 0.00 0.00 0.00 4.04
107 108 1.442769 TTGTTGATCTGCGGCTTCTC 58.557 50.000 0.00 0.00 0.00 2.87
108 109 1.741706 CATTGTTGATCTGCGGCTTCT 59.258 47.619 0.00 0.00 0.00 2.85
109 110 1.739466 TCATTGTTGATCTGCGGCTTC 59.261 47.619 0.00 0.00 0.00 3.86
110 111 1.825090 TCATTGTTGATCTGCGGCTT 58.175 45.000 0.00 0.00 0.00 4.35
111 112 1.741706 CTTCATTGTTGATCTGCGGCT 59.258 47.619 0.00 0.00 0.00 5.52
112 113 1.739466 TCTTCATTGTTGATCTGCGGC 59.261 47.619 0.00 0.00 0.00 6.53
113 114 2.743664 TGTCTTCATTGTTGATCTGCGG 59.256 45.455 0.00 0.00 0.00 5.69
114 115 4.611310 ATGTCTTCATTGTTGATCTGCG 57.389 40.909 0.00 0.00 0.00 5.18
115 116 6.760298 TCTCTATGTCTTCATTGTTGATCTGC 59.240 38.462 0.00 0.00 35.70 4.26
116 117 8.713737 TTCTCTATGTCTTCATTGTTGATCTG 57.286 34.615 0.00 0.00 35.70 2.90
117 118 8.756927 TCTTCTCTATGTCTTCATTGTTGATCT 58.243 33.333 0.00 0.00 35.70 2.75
118 119 8.939201 TCTTCTCTATGTCTTCATTGTTGATC 57.061 34.615 0.00 0.00 35.70 2.92
119 120 9.730705 TTTCTTCTCTATGTCTTCATTGTTGAT 57.269 29.630 0.00 0.00 35.70 2.57
120 121 9.730705 ATTTCTTCTCTATGTCTTCATTGTTGA 57.269 29.630 0.00 0.00 35.70 3.18
121 122 9.770503 CATTTCTTCTCTATGTCTTCATTGTTG 57.229 33.333 0.00 0.00 35.70 3.33
122 123 8.457261 GCATTTCTTCTCTATGTCTTCATTGTT 58.543 33.333 0.00 0.00 35.70 2.83
123 124 7.066766 GGCATTTCTTCTCTATGTCTTCATTGT 59.933 37.037 0.00 0.00 35.70 2.71
124 125 7.282675 AGGCATTTCTTCTCTATGTCTTCATTG 59.717 37.037 0.00 0.00 30.48 2.82
125 126 7.344913 AGGCATTTCTTCTCTATGTCTTCATT 58.655 34.615 0.00 0.00 30.48 2.57
126 127 6.897986 AGGCATTTCTTCTCTATGTCTTCAT 58.102 36.000 0.00 0.00 30.48 2.57
127 128 6.305272 AGGCATTTCTTCTCTATGTCTTCA 57.695 37.500 0.00 0.00 30.48 3.02
128 129 8.900983 ATAAGGCATTTCTTCTCTATGTCTTC 57.099 34.615 4.62 0.00 41.73 2.87
129 130 9.995003 CTATAAGGCATTTCTTCTCTATGTCTT 57.005 33.333 0.00 0.00 44.05 3.01
130 131 9.373450 TCTATAAGGCATTTCTTCTCTATGTCT 57.627 33.333 0.00 0.00 35.86 3.41
131 132 9.988815 TTCTATAAGGCATTTCTTCTCTATGTC 57.011 33.333 0.00 0.00 0.00 3.06
132 133 9.995003 CTTCTATAAGGCATTTCTTCTCTATGT 57.005 33.333 0.00 0.00 0.00 2.29
133 134 9.995003 ACTTCTATAAGGCATTTCTTCTCTATG 57.005 33.333 0.00 0.00 37.01 2.23
136 137 8.982723 TGTACTTCTATAAGGCATTTCTTCTCT 58.017 33.333 0.00 0.00 37.01 3.10
137 138 9.771534 ATGTACTTCTATAAGGCATTTCTTCTC 57.228 33.333 0.00 0.00 37.01 2.87
297 303 2.737359 GCATCATCCAACCATTGCAGTG 60.737 50.000 1.49 1.49 0.00 3.66
323 334 2.484264 GCTTACTTGTCTTCCGCACAAT 59.516 45.455 0.00 0.00 33.30 2.71
329 340 3.325870 TGTGATGCTTACTTGTCTTCCG 58.674 45.455 0.00 0.00 0.00 4.30
346 357 8.523915 AATTGAATATGCTTTAGGTGATGTGA 57.476 30.769 0.00 0.00 0.00 3.58
467 479 2.092699 GTCATGAGGGAAGGAAGAAGGG 60.093 54.545 0.00 0.00 0.00 3.95
484 509 1.001269 TCCGACGAGGTCTGGTCAT 60.001 57.895 12.33 0.00 41.99 3.06
514 552 6.385443 ACTTCACCCTAAGATAGATGATGGA 58.615 40.000 0.00 0.00 0.00 3.41
518 556 8.150945 GCAATTACTTCACCCTAAGATAGATGA 58.849 37.037 0.00 0.00 0.00 2.92
532 570 7.885399 AGATAGATAATGGGGCAATTACTTCAC 59.115 37.037 0.00 0.00 0.00 3.18
564 602 0.618968 GCGATCCCCTATCCTCCCAT 60.619 60.000 0.00 0.00 0.00 4.00
585 623 2.758130 ACACCACCCATGAAAACCTTT 58.242 42.857 0.00 0.00 0.00 3.11
605 643 1.213296 GACCATCCCTCTAAGCCCAA 58.787 55.000 0.00 0.00 0.00 4.12
711 755 3.083997 CCCTAACCGCTGGCCTCT 61.084 66.667 3.32 0.00 0.00 3.69
718 762 4.783501 TACCCCGCCCTAACCGCT 62.784 66.667 0.00 0.00 0.00 5.52
745 789 0.617820 TCCTTCTTTCCCCTCCCGAG 60.618 60.000 0.00 0.00 0.00 4.63
784 828 5.591067 TCCAACGGTTTAAAACAGATTCACT 59.409 36.000 3.76 0.00 0.00 3.41
798 842 8.019656 ACTACTAGATCATAATCCAACGGTTT 57.980 34.615 0.00 0.00 31.78 3.27
939 989 1.667724 CTCGGCTCTGCTTTTATGGTG 59.332 52.381 0.00 0.00 0.00 4.17
990 1040 0.249911 GGAAGAACATCGATCGGGGG 60.250 60.000 16.41 7.62 0.00 5.40
1398 1454 1.556564 CGTCGACGTTGAATATGCCT 58.443 50.000 29.08 0.00 34.11 4.75
1494 1550 1.006102 CAGTTCGGAGGCAACGACT 60.006 57.895 3.01 2.52 40.45 4.18
2334 2420 4.456806 GGCACGAACTGGTTGTCT 57.543 55.556 0.00 0.00 0.00 3.41
2538 2630 4.662961 CGCACTCTGACCGGCACA 62.663 66.667 0.00 0.63 0.00 4.57
2745 2840 3.730761 CAGCGCACTCACCAAGCC 61.731 66.667 11.47 0.00 0.00 4.35
2765 2860 6.226787 CACTCTTATGATGGTACTCATTCCC 58.773 44.000 3.21 0.00 37.13 3.97
2788 2883 5.396436 GGTCACTTAGCTTTAGCCTAATCCA 60.396 44.000 0.00 0.00 43.38 3.41
2895 2996 6.211515 GGAAATCTGTCATCAATAATGGCAC 58.788 40.000 0.00 0.00 44.97 5.01
3014 3116 5.531122 AGTCAGTACTACTGCAACTCAAA 57.469 39.130 10.92 0.00 45.54 2.69
3044 3150 9.349713 ACAAATCAGTCCTACTGTTTATTTCAA 57.650 29.630 6.93 0.00 46.03 2.69
3045 3151 8.918202 ACAAATCAGTCCTACTGTTTATTTCA 57.082 30.769 6.93 0.00 46.03 2.69
3046 3152 9.827411 GAACAAATCAGTCCTACTGTTTATTTC 57.173 33.333 6.93 7.43 46.03 2.17
3047 3153 8.504005 CGAACAAATCAGTCCTACTGTTTATTT 58.496 33.333 6.93 3.84 46.03 1.40
3048 3154 7.876068 TCGAACAAATCAGTCCTACTGTTTATT 59.124 33.333 6.93 3.56 46.03 1.40
3049 3155 7.383687 TCGAACAAATCAGTCCTACTGTTTAT 58.616 34.615 6.93 0.00 46.03 1.40
3050 3156 6.751157 TCGAACAAATCAGTCCTACTGTTTA 58.249 36.000 6.93 0.00 46.03 2.01
3051 3157 5.607477 TCGAACAAATCAGTCCTACTGTTT 58.393 37.500 6.93 2.73 46.03 2.83
3052 3158 5.209818 TCGAACAAATCAGTCCTACTGTT 57.790 39.130 6.93 0.00 46.03 3.16
3053 3159 4.866508 TCGAACAAATCAGTCCTACTGT 57.133 40.909 6.93 0.00 46.03 3.55
3055 3161 6.574350 CCTAATCGAACAAATCAGTCCTACT 58.426 40.000 0.00 0.00 0.00 2.57
3056 3162 5.234543 GCCTAATCGAACAAATCAGTCCTAC 59.765 44.000 0.00 0.00 0.00 3.18
3057 3163 5.105106 TGCCTAATCGAACAAATCAGTCCTA 60.105 40.000 0.00 0.00 0.00 2.94
3058 3164 4.192317 GCCTAATCGAACAAATCAGTCCT 58.808 43.478 0.00 0.00 0.00 3.85
3059 3165 3.938963 TGCCTAATCGAACAAATCAGTCC 59.061 43.478 0.00 0.00 0.00 3.85
3060 3166 4.870426 TCTGCCTAATCGAACAAATCAGTC 59.130 41.667 0.00 0.00 0.00 3.51
3061 3167 4.832248 TCTGCCTAATCGAACAAATCAGT 58.168 39.130 0.00 0.00 0.00 3.41
3062 3168 4.272018 CCTCTGCCTAATCGAACAAATCAG 59.728 45.833 0.00 0.00 0.00 2.90
3063 3169 4.081142 TCCTCTGCCTAATCGAACAAATCA 60.081 41.667 0.00 0.00 0.00 2.57
3064 3170 4.442706 TCCTCTGCCTAATCGAACAAATC 58.557 43.478 0.00 0.00 0.00 2.17
3065 3171 4.487714 TCCTCTGCCTAATCGAACAAAT 57.512 40.909 0.00 0.00 0.00 2.32
3066 3172 3.973206 TCCTCTGCCTAATCGAACAAA 57.027 42.857 0.00 0.00 0.00 2.83
3078 3184 1.742268 GCACAATTCTCTTCCTCTGCC 59.258 52.381 0.00 0.00 0.00 4.85
3118 3224 5.178061 TGTTTATCATCTCATTCACACGCT 58.822 37.500 0.00 0.00 0.00 5.07
3120 3226 7.521529 ACTTTGTTTATCATCTCATTCACACG 58.478 34.615 0.00 0.00 0.00 4.49
3141 3247 2.292323 ACGGGGGAGTAGATGAGACTTT 60.292 50.000 0.00 0.00 0.00 2.66
3142 3248 1.288335 ACGGGGGAGTAGATGAGACTT 59.712 52.381 0.00 0.00 0.00 3.01
3143 3249 0.927767 ACGGGGGAGTAGATGAGACT 59.072 55.000 0.00 0.00 0.00 3.24
3144 3250 1.682323 GAACGGGGGAGTAGATGAGAC 59.318 57.143 0.00 0.00 0.00 3.36
3145 3251 1.569548 AGAACGGGGGAGTAGATGAGA 59.430 52.381 0.00 0.00 0.00 3.27
3146 3252 2.074729 AGAACGGGGGAGTAGATGAG 57.925 55.000 0.00 0.00 0.00 2.90
3147 3253 2.544844 AAGAACGGGGGAGTAGATGA 57.455 50.000 0.00 0.00 0.00 2.92
3148 3254 4.748277 TTTAAGAACGGGGGAGTAGATG 57.252 45.455 0.00 0.00 0.00 2.90
3149 3255 6.141790 AGTATTTAAGAACGGGGGAGTAGAT 58.858 40.000 0.00 0.00 0.00 1.98
3150 3256 5.522641 AGTATTTAAGAACGGGGGAGTAGA 58.477 41.667 0.00 0.00 0.00 2.59
3151 3257 5.221402 GGAGTATTTAAGAACGGGGGAGTAG 60.221 48.000 0.00 0.00 0.00 2.57
3152 3258 4.651045 GGAGTATTTAAGAACGGGGGAGTA 59.349 45.833 0.00 0.00 0.00 2.59
3153 3259 3.453717 GGAGTATTTAAGAACGGGGGAGT 59.546 47.826 0.00 0.00 0.00 3.85
3154 3260 3.181457 GGGAGTATTTAAGAACGGGGGAG 60.181 52.174 0.00 0.00 0.00 4.30
3155 3261 2.773661 GGGAGTATTTAAGAACGGGGGA 59.226 50.000 0.00 0.00 0.00 4.81
3156 3262 2.775960 AGGGAGTATTTAAGAACGGGGG 59.224 50.000 0.00 0.00 0.00 5.40
3157 3263 3.181457 GGAGGGAGTATTTAAGAACGGGG 60.181 52.174 0.00 0.00 0.00 5.73
3158 3264 3.453353 TGGAGGGAGTATTTAAGAACGGG 59.547 47.826 0.00 0.00 0.00 5.28
3159 3265 4.748277 TGGAGGGAGTATTTAAGAACGG 57.252 45.455 0.00 0.00 0.00 4.44
3160 3266 5.758784 GGAATGGAGGGAGTATTTAAGAACG 59.241 44.000 0.00 0.00 0.00 3.95
3161 3267 6.659824 TGGAATGGAGGGAGTATTTAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
3162 3268 6.901615 TGGAATGGAGGGAGTATTTAAGAA 57.098 37.500 0.00 0.00 0.00 2.52
3163 3269 6.901615 TTGGAATGGAGGGAGTATTTAAGA 57.098 37.500 0.00 0.00 0.00 2.10
3164 3270 7.954666 TTTTGGAATGGAGGGAGTATTTAAG 57.045 36.000 0.00 0.00 0.00 1.85
3165 3271 9.998752 TTATTTTGGAATGGAGGGAGTATTTAA 57.001 29.630 0.00 0.00 0.00 1.52
3166 3272 9.998752 TTTATTTTGGAATGGAGGGAGTATTTA 57.001 29.630 0.00 0.00 0.00 1.40
3167 3273 8.909423 TTTATTTTGGAATGGAGGGAGTATTT 57.091 30.769 0.00 0.00 0.00 1.40
3168 3274 8.927411 CATTTATTTTGGAATGGAGGGAGTATT 58.073 33.333 0.00 0.00 31.28 1.89
3169 3275 8.288812 TCATTTATTTTGGAATGGAGGGAGTAT 58.711 33.333 0.00 0.00 34.74 2.12
3170 3276 7.647827 TCATTTATTTTGGAATGGAGGGAGTA 58.352 34.615 0.00 0.00 34.74 2.59
3171 3277 6.502138 TCATTTATTTTGGAATGGAGGGAGT 58.498 36.000 0.00 0.00 34.74 3.85
3172 3278 7.607615 ATCATTTATTTTGGAATGGAGGGAG 57.392 36.000 0.00 0.00 34.74 4.30
3173 3279 7.993349 AATCATTTATTTTGGAATGGAGGGA 57.007 32.000 0.00 0.00 34.74 4.20
3217 3323 9.932207 TTCCAAAATAGACGACTCAACTTTATA 57.068 29.630 0.00 0.00 0.00 0.98
3218 3324 8.718734 GTTCCAAAATAGACGACTCAACTTTAT 58.281 33.333 0.00 0.00 0.00 1.40
3219 3325 7.095940 CGTTCCAAAATAGACGACTCAACTTTA 60.096 37.037 0.00 0.00 37.69 1.85
3220 3326 6.292703 CGTTCCAAAATAGACGACTCAACTTT 60.293 38.462 0.00 0.00 37.69 2.66
3221 3327 5.176958 CGTTCCAAAATAGACGACTCAACTT 59.823 40.000 0.00 0.00 37.69 2.66
3222 3328 4.684703 CGTTCCAAAATAGACGACTCAACT 59.315 41.667 0.00 0.00 37.69 3.16
3223 3329 4.143179 CCGTTCCAAAATAGACGACTCAAC 60.143 45.833 0.00 0.00 37.69 3.18
3224 3330 3.991773 CCGTTCCAAAATAGACGACTCAA 59.008 43.478 0.00 0.00 37.69 3.02
3225 3331 3.256383 TCCGTTCCAAAATAGACGACTCA 59.744 43.478 0.00 0.00 37.69 3.41
3226 3332 3.841643 TCCGTTCCAAAATAGACGACTC 58.158 45.455 0.00 0.00 37.69 3.36
3227 3333 3.257624 ACTCCGTTCCAAAATAGACGACT 59.742 43.478 0.00 0.00 37.69 4.18
3228 3334 3.367025 CACTCCGTTCCAAAATAGACGAC 59.633 47.826 0.00 0.00 37.69 4.34
3229 3335 3.256383 TCACTCCGTTCCAAAATAGACGA 59.744 43.478 0.00 0.00 37.69 4.20
3230 3336 3.581755 TCACTCCGTTCCAAAATAGACG 58.418 45.455 0.00 0.00 35.44 4.18
3231 3337 4.566987 ACTCACTCCGTTCCAAAATAGAC 58.433 43.478 0.00 0.00 0.00 2.59
3232 3338 4.884668 ACTCACTCCGTTCCAAAATAGA 57.115 40.909 0.00 0.00 0.00 1.98
3233 3339 8.195436 TCTTATACTCACTCCGTTCCAAAATAG 58.805 37.037 0.00 0.00 0.00 1.73
3234 3340 7.977853 GTCTTATACTCACTCCGTTCCAAAATA 59.022 37.037 0.00 0.00 0.00 1.40
3235 3341 6.817140 GTCTTATACTCACTCCGTTCCAAAAT 59.183 38.462 0.00 0.00 0.00 1.82
3236 3342 6.161381 GTCTTATACTCACTCCGTTCCAAAA 58.839 40.000 0.00 0.00 0.00 2.44
3237 3343 5.244402 TGTCTTATACTCACTCCGTTCCAAA 59.756 40.000 0.00 0.00 0.00 3.28
3238 3344 4.768448 TGTCTTATACTCACTCCGTTCCAA 59.232 41.667 0.00 0.00 0.00 3.53
3239 3345 4.338012 TGTCTTATACTCACTCCGTTCCA 58.662 43.478 0.00 0.00 0.00 3.53
3240 3346 4.978083 TGTCTTATACTCACTCCGTTCC 57.022 45.455 0.00 0.00 0.00 3.62
3241 3347 7.829378 AAAATGTCTTATACTCACTCCGTTC 57.171 36.000 0.00 0.00 0.00 3.95
3242 3348 8.746530 TCTAAAATGTCTTATACTCACTCCGTT 58.253 33.333 0.00 0.00 0.00 4.44
3243 3349 8.289939 TCTAAAATGTCTTATACTCACTCCGT 57.710 34.615 0.00 0.00 0.00 4.69
3244 3350 8.622157 TCTCTAAAATGTCTTATACTCACTCCG 58.378 37.037 0.00 0.00 0.00 4.63
3282 3388 9.890629 TCACTCATTTTCTGCTTTATATGTAGT 57.109 29.630 0.00 0.00 0.00 2.73
3289 3395 9.453572 TGTAGATTCACTCATTTTCTGCTTTAT 57.546 29.630 0.00 0.00 0.00 1.40
3290 3396 8.721478 GTGTAGATTCACTCATTTTCTGCTTTA 58.279 33.333 0.00 0.00 35.68 1.85
3291 3397 7.446625 AGTGTAGATTCACTCATTTTCTGCTTT 59.553 33.333 0.00 0.00 44.07 3.51
3292 3398 6.939163 AGTGTAGATTCACTCATTTTCTGCTT 59.061 34.615 0.00 0.00 44.07 3.91
3293 3399 6.471146 AGTGTAGATTCACTCATTTTCTGCT 58.529 36.000 0.00 0.00 44.07 4.24
3294 3400 6.734104 AGTGTAGATTCACTCATTTTCTGC 57.266 37.500 0.00 0.00 44.07 4.26
3310 3416 9.534565 ACGTATAGTCGTATTTTAGAGTGTAGA 57.465 33.333 0.00 0.00 42.35 2.59
3325 3431 6.045318 ACTACACACAGATACGTATAGTCGT 58.955 40.000 8.34 11.36 45.97 4.34
3326 3432 6.522233 ACTACACACAGATACGTATAGTCG 57.478 41.667 8.34 6.55 0.00 4.18
3393 3499 7.859325 TTAACCAAATAGTGCAGGAGTTATC 57.141 36.000 0.00 0.00 0.00 1.75
3394 3500 8.275040 AGATTAACCAAATAGTGCAGGAGTTAT 58.725 33.333 0.00 0.00 0.00 1.89
3395 3501 7.630082 AGATTAACCAAATAGTGCAGGAGTTA 58.370 34.615 0.00 0.00 0.00 2.24
3396 3502 6.485171 AGATTAACCAAATAGTGCAGGAGTT 58.515 36.000 0.00 0.00 0.00 3.01
3397 3503 6.067217 AGATTAACCAAATAGTGCAGGAGT 57.933 37.500 0.00 0.00 0.00 3.85
3398 3504 8.682936 ATAAGATTAACCAAATAGTGCAGGAG 57.317 34.615 0.00 0.00 0.00 3.69
3460 3566 9.939802 GAGACTTTACCCTAACTCAAAAATAGA 57.060 33.333 0.00 0.00 0.00 1.98
3461 3567 9.163899 GGAGACTTTACCCTAACTCAAAAATAG 57.836 37.037 0.00 0.00 0.00 1.73
3462 3568 8.105197 GGGAGACTTTACCCTAACTCAAAAATA 58.895 37.037 0.00 0.00 42.56 1.40
3463 3569 6.946583 GGGAGACTTTACCCTAACTCAAAAAT 59.053 38.462 0.00 0.00 42.56 1.82
3464 3570 6.301486 GGGAGACTTTACCCTAACTCAAAAA 58.699 40.000 0.00 0.00 42.56 1.94
3465 3571 5.221986 GGGGAGACTTTACCCTAACTCAAAA 60.222 44.000 0.00 0.00 44.97 2.44
3466 3572 4.287845 GGGGAGACTTTACCCTAACTCAAA 59.712 45.833 0.00 0.00 44.97 2.69
3467 3573 3.842436 GGGGAGACTTTACCCTAACTCAA 59.158 47.826 0.00 0.00 44.97 3.02
3468 3574 3.447950 GGGGAGACTTTACCCTAACTCA 58.552 50.000 0.00 0.00 44.97 3.41
3475 3581 2.435069 GCTTAGAGGGGAGACTTTACCC 59.565 54.545 0.00 0.00 45.06 3.69
3476 3582 3.376636 AGCTTAGAGGGGAGACTTTACC 58.623 50.000 0.00 0.00 0.00 2.85
3477 3583 4.466726 TCAAGCTTAGAGGGGAGACTTTAC 59.533 45.833 0.00 0.00 0.00 2.01
3478 3584 4.466726 GTCAAGCTTAGAGGGGAGACTTTA 59.533 45.833 0.00 0.00 0.00 1.85
3479 3585 3.262151 GTCAAGCTTAGAGGGGAGACTTT 59.738 47.826 0.00 0.00 0.00 2.66
3480 3586 2.835156 GTCAAGCTTAGAGGGGAGACTT 59.165 50.000 0.00 0.00 0.00 3.01
3481 3587 2.462723 GTCAAGCTTAGAGGGGAGACT 58.537 52.381 0.00 0.00 0.00 3.24
3482 3588 1.483004 GGTCAAGCTTAGAGGGGAGAC 59.517 57.143 0.00 0.00 0.00 3.36
3483 3589 1.078823 TGGTCAAGCTTAGAGGGGAGA 59.921 52.381 0.00 0.00 0.00 3.71
3484 3590 1.484240 CTGGTCAAGCTTAGAGGGGAG 59.516 57.143 0.00 0.00 0.00 4.30
3485 3591 1.573108 CTGGTCAAGCTTAGAGGGGA 58.427 55.000 0.00 0.00 0.00 4.81
3508 3614 4.794439 GTTGGCAAATCCGCGGGC 62.794 66.667 27.83 20.62 37.80 6.13
3509 3615 4.128388 GGTTGGCAAATCCGCGGG 62.128 66.667 27.83 10.44 37.80 6.13
3510 3616 4.128388 GGGTTGGCAAATCCGCGG 62.128 66.667 22.12 22.12 37.80 6.46
3511 3617 3.051392 GAGGGTTGGCAAATCCGCG 62.051 63.158 0.00 0.00 41.96 6.46
3512 3618 1.678970 AGAGGGTTGGCAAATCCGC 60.679 57.895 0.00 8.94 41.96 5.54
3513 3619 1.937546 GCAGAGGGTTGGCAAATCCG 61.938 60.000 0.00 0.00 41.96 4.18
3514 3620 0.899717 TGCAGAGGGTTGGCAAATCC 60.900 55.000 0.00 7.15 36.74 3.01
3515 3621 1.134907 CATGCAGAGGGTTGGCAAATC 60.135 52.381 0.00 0.49 41.43 2.17
3516 3622 0.899720 CATGCAGAGGGTTGGCAAAT 59.100 50.000 0.00 0.00 41.43 2.32
3517 3623 0.469705 ACATGCAGAGGGTTGGCAAA 60.470 50.000 0.00 0.00 41.43 3.68
3518 3624 0.895100 GACATGCAGAGGGTTGGCAA 60.895 55.000 0.00 0.00 41.43 4.52
3519 3625 1.303561 GACATGCAGAGGGTTGGCA 60.304 57.895 0.00 0.00 42.43 4.92
3520 3626 1.303561 TGACATGCAGAGGGTTGGC 60.304 57.895 0.00 0.00 0.00 4.52
3521 3627 0.037303 AGTGACATGCAGAGGGTTGG 59.963 55.000 0.00 0.00 0.00 3.77
3522 3628 1.901591 AAGTGACATGCAGAGGGTTG 58.098 50.000 0.00 0.00 0.00 3.77
3523 3629 2.233271 CAAAGTGACATGCAGAGGGTT 58.767 47.619 0.00 0.00 0.00 4.11
3524 3630 1.546323 CCAAAGTGACATGCAGAGGGT 60.546 52.381 0.00 0.00 0.00 4.34
3525 3631 1.171308 CCAAAGTGACATGCAGAGGG 58.829 55.000 0.00 0.00 0.00 4.30
3526 3632 1.901591 ACCAAAGTGACATGCAGAGG 58.098 50.000 0.00 0.00 0.00 3.69
3537 3643 3.294493 CCACCGGCCACCAAAGTG 61.294 66.667 0.00 0.00 44.12 3.16
3538 3644 4.596585 CCCACCGGCCACCAAAGT 62.597 66.667 0.00 0.00 0.00 2.66
3539 3645 4.596585 ACCCACCGGCCACCAAAG 62.597 66.667 0.00 0.00 0.00 2.77
3540 3646 4.904590 CACCCACCGGCCACCAAA 62.905 66.667 0.00 0.00 0.00 3.28
3549 3655 2.521958 AATTCTCCTCGCACCCACCG 62.522 60.000 0.00 0.00 0.00 4.94
3550 3656 0.744771 GAATTCTCCTCGCACCCACC 60.745 60.000 0.00 0.00 0.00 4.61
3551 3657 0.250513 AGAATTCTCCTCGCACCCAC 59.749 55.000 0.88 0.00 0.00 4.61
3552 3658 0.250234 CAGAATTCTCCTCGCACCCA 59.750 55.000 4.57 0.00 0.00 4.51
3553 3659 0.462759 CCAGAATTCTCCTCGCACCC 60.463 60.000 4.57 0.00 0.00 4.61
3554 3660 0.250513 ACCAGAATTCTCCTCGCACC 59.749 55.000 4.57 0.00 0.00 5.01
3555 3661 1.338200 ACACCAGAATTCTCCTCGCAC 60.338 52.381 4.57 0.00 0.00 5.34
3556 3662 0.976641 ACACCAGAATTCTCCTCGCA 59.023 50.000 4.57 0.00 0.00 5.10
3557 3663 1.205893 AGACACCAGAATTCTCCTCGC 59.794 52.381 4.57 0.00 0.00 5.03
3558 3664 2.757868 AGAGACACCAGAATTCTCCTCG 59.242 50.000 4.57 0.00 37.13 4.63
3559 3665 4.122143 CAGAGACACCAGAATTCTCCTC 57.878 50.000 4.57 7.45 37.13 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.