>input_sequence_47758
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---------ATGTTCTTCCTCATGGGCGCGGGCGCGG------ATTCGACCACGTGTCACGTCGCGGCGCACGCCCTGGC
GAGCCCGGTGGCCGCCGTCTTCTTCGCCTCGGCCGTGTGCACGCTGGCCCTCGCCGTCCTCCTGGGCTCCATGCGGCTGC
GGCCGCCGTGGTGGTGCGCGTGCGCGGTGTGCGAGGCGTACCTGACGGCGTCGTGGACGGGCGAGTTCGACAACCTCTGC
GACTGGTTCGCCCACCTGCTGCGCCGCGAGCCCGGGCGGACCGTGCACGTGCACGTCCTCGGGAACGTGCTCACCGCCAA
CCCGGCCACCGTCGAGCACATGCTCCGCGGCCGGTTCGACAACTACCCCAAGGGCGCGCCCTTCTCCGCCATCCTCGCCG
ACTTCCTCGGCCGAGGCATATTCAACGTCGACGGCGACTCCTGGCTCTTCCAGCGCAAGCTCGCCGCCGCCGAGCTCGCG
TCCCCGGCGATCCGCGCGTTCACGGCCAGAGTCGTTGCCTCCGAACTGAGGTGCCGCCTCATTCCTCTGCTCCACTCTGC
CTCCGCTGGACAGGGTGGCGAGGAG---------------AAGCTGCTCGACCTGCAGGACGTGTTCCGCCGCTTCGCTT
TCGACTGCATATGCAAGATCTCCTTCGGCCTCGACCCCGGCTGCCTCGAGCTTTCTCTGCCGATGTCGGCGTTCGCCGAC
GCTTTCGACACGGCGTCGATGCTCTCGGCGCGGCGAGCGACGGCGCCCATGCATGTGGTCTGGAAGATTAAGCGGTTGCT
GAACATAGGGGACGAGCGGGAGCTCCGCGACGCGATCGGCCTCGTCGACGATCTTGCCGCCGAGGTCATCCGGCAGCGCC
GCAAGCTTGGCTCCACTACTGCCTCGGGCGACGACCTCCTGTCGCGCTTCATGGGCTCCATCAA---------------C
GACGACAAGTACCTCCGCGACATCGTCGTGAGCTTCCTGCTGGCCGGGCGCGACACCGTCGCCTCTGCTCTCACCGCCTT
CTTCCTGCTCCTCTGCGACCACCCCCACGTCGCCGACGCGATCCGGGACGAGGTCTCCCGCGTCACCGCCGGAGGGAGAG
ACGCCGACGACCACCCCGCGATCGCCACCTCCGAGAAGCTCAAGGACATGCACTACGTGCACGCGGCCCTGTACGAGTGC
ATGCGGCTGTTCCCGCCGGTGCAGTTCGACTCCAAGTTCGCGGCCGGCGAGGACACGCTCCCGGACGGCACGCCCGTGGC
CAAGGGCACCCGGGTGACCTACCACGCGTACGCCATGGGACGGATGGAGTCCGTGTGGGGGCCCGACTGCGCCGAGTTCC
GGCCGGAGAGGTGGCTCCGAGA------CAACCAGTTCGTGCCGGAGAGCCCGTACCGGTACCCGGTGTTCCAGGGCGGC
GTGCGCGTCTGCATTGGCAAGGAGCTGGCCATCATGGAGATGAAGGCGGCCATCGTGGCCGTGGTCCAGGGCTTCGACAT
CGAGACGGTCGGGCGGAGCTCGCGGCGGCCCAAGTTCGCGCCGGGGCTCACCGCCGCGTTCGCCGGGGGTGTGCCGGTCA
GAGTGCGCCGGCGAGCGCGCGCGAGGGGCTAG------------------------------------------------
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------
>chr1D_1_TraesCS1D01G276600
ATGCACTCGTTGCTAGAATTGAGGCTAGAGATGAAACTACAGATGAGATCAGATGCGAAGCAATGTCTACTTCTTTAGAA
TCGAAGAAGAAAGAAATGTTGAAGCTCGAGAAGCCGCAGATCAACAATGAAGACATAGAGAAGAAATGCCTTATAGAAGT
ACATTTAACAGAATTTTCAATGGAAGAACAATTATTATATCCCTCGGTATCTATGAAATCGAATTTATTTAACCAAAGTT
CTTAT-----GAAATTCATGTTGTTTTGGAAGACTTCAATTTTAGAATATCCATTTTTGGGTCACT-----GCAATGGTT
GGATGATGCTGAGATTGTGCGGAAGACAAGTAAGCATCACATCACCTAAAGCATATTCAATTTTGACATTTTCCT-CCAA
AATGGAGGCCTTGACCTCCATAACGGGTTTGCTATTTCTCATGTGCCTGAAATTTCTTCTCCTGCCAGACACTTTTTTCC
-------------CTTCTTCCTTCCCTCATGACCAGACCTC-------------GTCGGAGAAGAACTAGCTCCATCATC
TATCTTAGGGTGAAGTAATTGCCCCATTATCTATCTTAGGGATGGGAGGATAGGGGATCGCCAAAGGTTTTCATGGGTGG
TGTTGGGCTTAGAGGGATGGTCGGGGCGGCGACCAGCAACGTCGGTGGGGGGAGGTCCAGGGGAGGACGACGCGGTGAAG
CGG------GTAGCGCCCACCGGCCGCGGGTGGTAGAGGCCAGCGGTTAGGGCGGGGTAGGCTGGGGGCTCGGGAGGGGA
AAGAAGGAATGGAGGTTGAAGATGAACAGTGAATCTGTTTTAAACCGTTGGATTATGATCTAGTAGTTCCTGTATAAGTG
ACTGATGGATGGATGAAAACATTTCAGGTACGTGACGTATAGTCGGTCCGGTATATAAAACGCCGCGGGCGCAGCCACAA
CGCCAAACGCGCACGCACAC------ACCACCATAAAAGCAGAGCCGAGCGCACGCGCGCGAAAGGAGCTCAGCGAAAGC
CCCCGATCGATGTTCTTCCTCATGGGCGCGGGCGCGG------ATTCGACCACGTGTCACGTCGCGGCGCACGCCCTGGC
GAGCCCGGTGGCCGCCGTCTTCTTCGCCTCGGCCGTGTGCACGCTGGCCCTCGCCGTCCTCCTGGGCTCCATGCGGCTGC
GGCCGCCGTGGTGGTGCGCGTGCGCGGTGTGCGAGGCGTACCTGACGGCGTCGTGGACGGGCGAGTTCGACAACCTCTGC
GACTGGTTCGCCCACCTGCTGCGCCGCGAGCCCGGGCGGACCGTGCACGTGCACGTCCTCGGGAACGTGCTCACCGCCAA
CCCGGCCACCGTCGAGCACATGCTCCGCGGCCGGTTCGACAACTACCCCAAGGGCGCGCCCTTCTCCGCCATCCTCGCCG
ACTTCCTCGGCCGAGGCATATTCAACGTCGACGGCGACTCCTGGCTCTTCCAGCGCAAGCTCGCCGCCGCCGAGCTCGCG
TCCCCGGCGATCCGCGCGTTCACGGCCAGAGTCGTTGCCTCCGAACTGAGGTGCCGCCTCATTCCTCTGCTCCACTCTGC
CTCCGCTGGACAGGGTGGCGAGGAG---------------AAGCTGCTCGACCTGCAGGACGTGTTCCGCCGCTTCGCTT
TCGACTGCATATGCAAGATCTCCTTCGGCCTCGACCCCGGCTGCCTCGAGCTTTCTCTGCCGATGTCGGCGTTCGCCGAC
GCTTTCGACACGGCGTCGATGCTCTCGGCGCGGCGAGCGACGGCGCCCATGCATGTGGTCTGGAAGATTAAGCGGTTGCT
GAACATAGGGGACGAGCGGGAGCTCCGCGACGCGATCGGCCTCGTCGACGATCTTGCCGCCGAGGTCATCCGGCAGCGCC
GCAAGCTTGGCTCCACTACTGCCTCGGGCGACGACCTCCTGTCGCGCTTCATGGGCTCCATCAA---------------C
GACGACAAGTACCTCCGCGACATCGTCGTGAGCTTCCTGCTGGCCGGGCGCGACACCGTCGCCTCTGCTCTCACCGCCTT
CTTCCTGCTCCTCTGCGACCACCCCCACGTCGCCGACGCGATCCGGGACGAGGTCTCCCGCGTCACCGCCGGAGGGAGAG
ACGCCGACGACCACCCCGCGATCGCCACCTCCGAGAAGCTCAAGGACATGCACTACGTGCACGCGGCCCTGTACGAGTGC
ATGCGGCTGTTCCCGCCGGTGCAGTTCGACTCCAAGTTCGCGGCCGGCGAGGACACGCTCCCGGACGGCACGCCCGTGGC
CAAGGGCACCCGGGTGACCTACCACGCGTACGCCATGGGACGGATGGAGTCCGTGTGGGGGCCCGACTGCGCCGAGTTCC
GGCCGGAGAGGTGGCTCCGAGA------CAACCAGTTCGTGCCGGAGAGCCCGTACCGGTACCCGGTGTTCCAGGGCGGC
GTGCGCGTCTGCATTGGCAAGGAGCTGGCCATCATGGAGATGAAGGCGGCCATCGTGGCCGTGGTCCAGGGCTTCGACAT
CGAGACGGTCGGGCGGAGCTCGCGGCGGCCCAAGTTCGCGCCGGGGCTCACCGCCGCGTTCGCCGGGGGTGTGCCGGTCA
GAGTGCGCCGGCGAGCGCGCGCGAGGGGCTAGGTTTATAGTAACTC---TTTTTTACTTAGTCAAAACGTCGCCGTCAGC
CGCACGGGATGGATGGATCTATTCGTTTCATCTTTGCCTTGCGACCGCACATCGGATGTGATCGGGCGCACGCAAACTTG
TTGTAATCCACTCCTGCTCGAGAGTCAAGACCAGCACCCGGCTTGGTGAGTGCGCTGGAGGGAATGAGTACCATCATAAG
AGTGGATTAGGCTAAAGCTAAGTGACCTTTCCTCGGCTGCGACTCGGGCAAAGTGTGCAGCCGCCGGAGATCTTT----C
CAAGTTCAACGCACAAGTTCGTGCCCC--CCTCCGGTGCCATTATTGATGACAGATTTCCCATCCGATTCAAAGTT-GAG
AATAGATGTTCTTCAGCGTGGATTTTCTAGTTATGGACAGCATCGATTCAATTATTGCGAGGTGGTCGGCCATTGTT---
-TGAGTTGCAGTAGTACTGACTTTTTTTTTTGAAATAAACAGTAGGACTGATTTGTTCGATTAGGCAGAGGAAGAGAATT
GTGCGTTGCCAGTGGATACACAAAGCGTGTGAATGAGATGATAAACAAAGTCTCATCTACTCCCCCGTTCTTAAATACTC
CCTCCATTCCAAAATAAATGATTTAACTTTGTATTAACTTTATATAAAGTTGAGTCGTCTATTTTGGAACGGAGTGAGTA
TAAGACATTTTAGAGATTTTAATATAGACTACATATAAAGCAGAAAATGAGTGAATCTACACTCTAAAATACGACTATAC
GTATCTGTGTGTAGTTTATATTGAAATCTCTAAAATATCTTATATTTAGAAACGAAAGGATAACTCCTGCACTATTTGGT
TAATCTTATTAAAAATAAAATAAAAAACATGCCTAAGTAATTCAATCTATTTTTGAGTTAGGGTAAAGTCTCCCCTCTAA
GCTTGACCAGCGAGCCCGCGGATTTGCCAACCCTCTGCATGTCACTTTGGTGGCCGGTGGGTGCGAGGAGAATTCTGGTG
TCTCTG
>chr1A_151
--------------------------------------------------------------------------------
----------------------------------------------------------------------TTATAGGAGT
ACATCTAACAAAAATTTCAATGGAAGAACAATTATTATATCCCTTAGTATATATGAAATCGAATTTATTTAACCAAAGTT
CTGATATTTTGAAATTCATGTTGTCTTGGAAGACTTCAATTTTAGAATATCCATTTTTGGGTTATTTTTCCGCATTGGTT
GGATGATGATGAGGTTGTGTGGAAGACAAGTAAGCACCACATCACCTAAACCATATTCAATTTTGTTTTTCTTCCTCTAA
AATGAAGGCCTTGACCTCCAAAACGGATTTGCTATTTCTC-TGTGCCTAAAATTTCTTCTCCCGTCAGTCACCTTTTCTC
TTCTTCCTTCCTTCTCCTTCCTTCCCTCTTGACCAGATCTT-------------GTCGGAGAAGAACTAGTCCCACCATC
TATCTTAGTTTGAAGTAATGGCCCCATTATCTATCTTAGGGGTGGGAGC-TAGGGGGTTGTCGGAGGTTTTCATGGGTGG
TGCCGGGCTTAGAGGGATGGTCGGGGCTGCGACCAGCAACGACGGTGGGAGGAGGTCGAGGGGAGGACGGGGCGGTGAAG
CGGTGCGCGGTAGCGCCAACCGGCCGCGGGTGGTGGAGGCCGGCGGTTAGGGCGGGGTAGGCTTGGGGGTCAGGAGGGGA
AAGAAGGAATGGAGGTTGAAGATGAA--GTGAATCTGTTTTGAACCGTTGGATTATGATCTAGCAGTTCCTGTATAAGTG
ACTGATGGATGGATGAAAATATTTCAGGTACGTGACGTACAGTCGGTCCGGTATATAAAACGCCGCGGGCGCAGCCACAA
CGCCAAACGCGCACGCACACGCACACACTACCATAAAAGCAGAGCCGAGCGCACGCGCGCGAAAGGAGCTCGG-GAAAG-
CCCCGATCGATGTTCTTCCTCATGGTCGCGGGCGCGGGCGCGGGTTCGACCACGTGTCACGTCGCGGCGCACGCCCTGGC
GAGCCCGGTGGCCGCCATCTTCTTCGCCTCGGCCGTGTGCACGCTGGCCCTCGCCGTGCTCCTGGGCTCCATGCGGCTGC
GGCCGCCGTGGTGGTGCGCGTGCGCGGTGTGCGAGGCCTACCTGACGGCGTCGTGGACGGGCGAGTTCGACAACCTCTGC
GACTGGTTCGCCCACCTGCTGCGCCGCGAGCCCGGGCGGACCGTGCACGTGCACGTCCTCGGCAACGTGCTCACCGCCAA
CCCGGCCACCGTCGAGCACATGCTCCGCGGCCGGTTCGACAACTACCCCAAGGGCGCGCCCTTCTCCGCCATCCTCGCCG
ACTTCCTCGGCCGCGGCATATTCAACGTCGACGGCGACTCCTGGCTCTTCCAGCGCAAGCTCGCCGCCGCCGAGCTCGCG
TCCCCGGCGATCCGCGCCTTCACGGCCAGCGTCGTTGCCTCCGAGCTGAGGTGCCGCCTCATTCCTCTGCTCCACTCTGC
TTCCGCTGAACAGGGTGGCGAGGAG---------------AAGCTGCTCGACCTGCAGGACGTGTTCCGCCGCTTCGCTT
TCGACTGCATATGCAAGATCTCCTTCGGCCTCGACCCCGGCTGCCTCGAGCTGTCCCTGCCTATGTCGGCGTTCGCCGAC
GCTTTCGACACGGCGTCGATGCTCTCGGCGCGGCGAGCGACGGCGCCCATGCACGTGGTCTGGAAGCTTAAGCGGTTGCT
CAACATAGGGGATGAGCGGGAGCTCCGCGACGCGATCGGCCTCGTCGACGATCTTGCCGCCGAGGTCATCCGGCAGCGCC
GCAAGCTCGGCTCCGCTACTGCCTCGGGCGACGACCTCCTGTCGCGCTTCATGGGCTCCATCAA---------------C
GACGACAAGTACCTCCGCGACATCGTCGTGAGCTTCCTGCTGGCCGGGCGCGACACCGTCGCCTCTGCTCTCACCGCCTT
CTTCCTGCTCCTCTCCGACCACCCCCACGTCGCCGACGCGATCCGGGACGAGGTCTCCCGCGTCACCGCCGGAGGGAGAG
ACGTCGACGACCACCCCGCGATCGCCTCCTCCGAGAATCTCAAGGACATGCACTACGTGCACGCGGCCCTGTACGAGTGC
ATGCGGCTGTTCCCGCCGGTGCAGTTCGACTCCAAGTTCGCGGCCGGGGAGGACACGCTCCCGGACGGCACGCCCGTGGC
CAAGGGCACCCGGGTGACCTACCACGCGTACGCCATGGGGCGGATGGAGTCCGTGTGGGGGCCCGACTGCGCCGAGTTCC
GGCCGGAGAGGTGGCTCCGGGA------CAGCCAGTTCGTGCCGGAGAGCCCGTACCGGTACCCGGTGTTCCAGGGCGGC
GTGCGCGTCTGCATTGGCAAGGAGCTGGCCATCATGGAGATGAAGGCCGCCATCGTGGCCGTGGTCCAGGGCTTCGACAT
CGAGACGGTGGGGCGGAGCTCGCGGCGGCCCAAGTTCGCGCCGGGGCTCACCGCCACGTTCGCCGGGGGGGTGCCGGTCA
AAGTGCGCCGGCGAGCACGTGCGCGCGGCTAGGTTTATACAGTAACTTTTTTTTTACTTAGTCAAAACGTTGCCGTCAGC
CGCACGGGATGGATGGATCTATTCGTTTCATCTTTGCTTTGCGACCGCACATCGGATGTGATCGGGCGCACGCAAACTTG
TTGTAATCCACTCCTGCTCGAGAGTCAATGGCAGCACCCAGCTTGGTGAGTGCGCTGGAAGGAATGAGTACCATCGTAAG
AGCGGATTAGGCTAAAGCTAAGTGACCTTTCCTCGGGTGCGACTTGGGCCAACGGTGCAGCCGCCGGAGATCTTT----C
CAAGTTCAACGCACAAGTTCGTGCCCCAACCTCCGATGCCATTATTGATGACAGATTTCCCATCCGATGCAAAGTTAGAG
AACAGATGTTCTTCAGCGTGGATTTTCTAGTTATGGACAGCATCGATTCAATTATTGAGAGGTGGTCGGCCATTGATTGA
ATGAATTGCAGTGTACTATTG-------------------------------TTGTTCGATTATGCAGAGGAAGAGAATT
GTGCGTTGCCAGAGGATAAACAATGTGTGTGATTGAGATGATAAAC----------------------------------
--------------------------------------------------------------------------------
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------
>chr1B_196
TATCATCCATCAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TATCTATGAAATCGAATTTATTTAACCAAAGTT
CTTATATTTTGAAATTCATGTTGTCTTGAAAGACTTCAATTTTAGAATATCCATTTTTGGGTTACT-----GCAATGGTT
GGATGATGCTGAGGTTGTGTGGAAGACAAGTAAGCACCACATCACCTAAAGCATATTCAATTTTGACATTTTCCTTCCAA
AACGGAGGCCTTGACCTCCATAACGGGTTTGCTATTTCTCATGTGCCTGAAATTTCTTCGCCCGTCAGTCACTTTTTT-C
-------------CTTCTTCCTTCCCTCTTGACCAGACCTCGCCAGAAAAGCTCGTCGGAGAAGAACTAGCCCCACCATC
TATCTTAGGATGAAGTAATTGCCCCATTATCTATCTTAGGGGTGAGGGGATAGGGGATCGCCGAAGGTTTTCATGGGTGG
TGGTGGGCTTAGATGGATGGTCGGGGCGACGACCAACAATGTCGGTGGGGGGAGGTCGAGGGGACGACGGGGCGGTGAAG
CGGTGCGCGGTAGCGCCCGCCGACCGCTAGTGGTGGAGGCCGACGGTTAGGGCGGGGTAGGCTGGGGGGTCGGGAGCGGA
AAGAAGGAATGGAGGTTGAAGATGAA--GTGAATCTGTTTTGAACCGTTGGATTATGATCTAGTAGTTCCTGTATAAGTG
ACTGATGGATGGATGAAAGCATTTCAGGTACGTGACGTGTAGTCGGTCGGGTATATAAAATGCCGCAGGCGCAGCCACAA
CGCCAAACGCGCACGCACAC------ACTACCATAAAAGCAGAGCCGAGCGCACGCGCGCGAAAGGAGCTCAGCGAAAG-
CCCCGATCGATGTTCTTCCTCATGGGCGCGGGCGCGGGCGCGGATTCGACCACGTGTCACGTCGCGGCGCACGCCCTGGC
GAGCCCGGTGGCCGCCGTCTTCTTCGCCTCGGCCGTGTGCACGCTGGCCCTCGCCGTGCTCCTGGGCTCCATGCGGCTGC
GGCCGCCGTGGTGGTGCGCGTGCGCGGTGTGCGAGGCGTACCTGACGGCATCGTGGACGGGCGAGTTCGACAACCTCTGC
GACTGGTTCGCCCACCTGCTGCGCCGCGAGCCCGGGCGGACCGTGCACGTGCACGTCCTCGGCAACGTGCTCACCGCCAA
CCCGGCCACCGTCGAGCACATGCTGCGCGGCCGGTTCGAGAACTACCCCAAGGGCGCGCCCTTCTCCGCCATCCTCGCCG
ACTTCCTCGGCCGTGGCATATTCAACGTCGACGGCGACTCCTGGCTCTTCCAGCGCAAGCTCGCCGCCGCCGAGCTCGCG
TCCCCGGCGATCCGCGCGTTCACGGCCAGCGTCGTGGCTTCCGAGCTGAGGTGCCGCCTCATTCCTCTGCTCCACTCTGC
CACTGCTGGACAGGGTGGCGGGGAG---------------AAGCTGCTCGACCTGCAGGACGTGTTCCGCCGCTTCGCTT
TCGACTGCATATGCAAGATTTCCTTCGGCCTCGACCCTGGCTGCCTCGAGCTGTCTCTGCCCATGTCGGCGTTCGCCGAC
GCTTTCGACACGGCGTCGATGCTCTCGGCGCGGCGAGCGACGGCGCCCATGCATGTGGTCTGGAAGCTTAAGCGGTTGCT
GAACATAGGGGATGAGCGGGAGCTCCGCGACGCGATCGGCCTCGTCGACGATCTTGCCACCGAGGTCATCCGGCAGCGCC
GCAAGCTCGGCTCCGCTACTGCCTCGGGCGACGACCTCCTCTCGCGCTTCATGGGCTCCATCAA---------------C
GATGACAAGTACCTCCGCGACATCGTTGTGAGCTTCCTGCTGGCCGGGCGCGACACCGTCGCCTCTGCTCTCACCGCCTT
CTTCCTGCTCCTCTCGGACCACCCCCACGTCGCCGACGCGATCCGGGACGAGGTCTCCCGCGTCACCGCCGGAGGGAAGG
ACGTCGACGACCACCCCGCGATCGCCACCTCCGACAAGCTCAAGGACATGCACTACGTGCACGCGGCCCTGTACGAGTGC
ATGCGGCTGTTCCCACCGGTGCAGTTCGACTCCAAGTTCGCGGCCGGCGAGGACACGCTCCCGGACGGCACGCCCGTGGC
CAAGGGCACCCGGGTGACCTACCACGCGTACGCCATGGGACGGATGGAGTCCGTGTGGGGGCCCGACTGCGCCGAGTTCC
GGCCGGAGAGGTGGCTCCGTGA------CAACCAGTTCGTGCCGGAGAGCCCGTACCGGTACCCGGTGTTCCAGGGCGGC
GTGCGCGTCTGCATTGGCAAGGAGCTGGCCATCATGGAGATGAAGGCGGCCATCGTGGCCGTGGTCCAGGGCTTCGACAT
CGAGACGGTCGGGCGGAGCTCGCGGCGGCCCAAGTTCGCGCCGGGGCTCACCGCCGCATTCGCAGGGGGAGTGCCGGTCA
GAGTGCGCCGGCGAGCGCTCGCGAGCGGCTAGGTTTATAGTAACTC---TTTTTTACTTAGTCAAAACGTCGCCGTGAGC
CGCACGGGATGGATGGATCTATTCGTTTCATCTTTGCTTTGCAACCGCACATCGGATGTGATCGGGCGCACGCAAAGTTG
TTGTAATCCACTCCTACTCGAGAGTCAAGACCAGCACCCAGCTTGGTGAGTGCGCTGGAAGGAATGAGTACTATCATAAG
AGCGGATTAGGCTAAAGCTAAGTGACTTTTCCTCGGCTGCGACTTGGGCAAACGGTGCAGCCGCCGGAAATCTTTGCACC
CAACTTCAACGCACAAGTTCGTGCCCC--CCTCCGATGCCATTATTGATGACAGATTTCCCATCTGATTGAAAGTTAGAG
AATAGATGTTCTTCAACGTGGCATTTCTAGTTATGGACAGCATCGATTCAATTATTGAGAGGTGGTCGGGCATTGAT---
-TGAATTGCAGTGTACT---------------------------------------------------------------
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>chr3A_1073
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-------GTGGCCGGCGCCTTCTTCGCGCTCGCGGTGTGCACCGTGGCGCTCGCCGCCCTGCTGGCCGTGGCGCGCACGC
GCCCGCCGTGGTGGTGCGACTGCGCGGTCTGCGAGGCCTACCTCACCGCCTCCTGGGCCGGCGAGTTCGACAACCTCTGC
GACTGGTACGCGCACCTGCTGCGCCGCTCGCCGTCGCAGACCGTGCACGTCCACGTGCTCCGCAACGTGCTCACCGCCAA
CCCCGTCACCGTCGAGCACATGCTGCGCGCGCGCTTCGATAACTACCCCAAGGGCAAGCCCTTCTCCGCCATCCTCGCCG
ACCTGCTCGGCCGCGGGATCTTCAACGTCGACGGAGACGCGTGGCTGTTCCAGCGGAAGCTCGCCGCGGCTGAGCTTGCG
TCCCCCGCGCTCAGGGCTTTCGCCTCGGGCGTCGTGGCTTCCGAGCTGCGGGGCCGTCTCGTTCCCCTGCTTGACTCTGC
CTGCTCCC------ACGACGACGACGACGACGACGGTGGCAAGGTGCTGGACCTGCAGGACGTGTTCCGTCGCTTCGCCT
TCGACTGCATATGCAAGATCTCCTTCGGCCTCGACCCGGGCTGCCTCGAGCTGTCCATGCCGGTGTCGGCGTTCGTGGAT
GCGTTCGACACGGCGTCGATGCTCTCTGCGAGGCGCGCGACCGCGCCGTTGCAGATCATATGGCGGCTGAAGCGGTTCTT
CAACGTCGGGGACGAGAGGAAGCTCCGGGAATCCGTGCGCCTCGTCGACGGGTTCGCCGCGGAGGTCACCCGGCAGCGAC
ACAAGCTCGGCGGCGCCGCG---TCCGGCAGCGACCTCCTGTCGCGGTTCATGGGCTCCATCAG---------------C
GACGAGAAGTACCTCCGGGACATCGTCGTCAGCTTCATGCTCGCCGGCCGCGACACCGTCGCCTCAGCGCTGACCGCCTT
CTTCCTGCTCCTCTCCGATCACCCGGAGGTCGCCGCCGCCATCCGGGACGAGGTGTCACGCGTCGC------------GG
GCGGCGACGACGGCGACCGGCCGAGCTTCAG---CAAGCTCAAGGACATGCACTACGTGCACGCGGCGCTGTACGAGAGC
ATGCGGCTGTTCCCGCCGGTGCAGTTCGACTCCAAGTTCGCGGCGGGCGACGACACGCTCCCGGACGGCACGGCGGTGGC
CAAGGGCACGCGGGTCACCTACCACGCCTACGCCATGGGCCGGATGGAGTCGGTGTGGGGCCCCGACTGCTCCGAGTTCC
GGCCCGAGCGGTGGCTCCGCGA------CGGGCAGTTCGTCCCGGTGAGCCCGTACCGGTACCCGGTGTTCCAGGCCGGC
GTGCGCGTCTGCGTCGGCAAGGACCTCGCGCTCATGGAGATGAAGGCCGTCATCGTCGCCGTCGTCCGGGGCTTCGACAT
CCAGGCGATCGAGCGCAGCTCGCGCCGGCCCAAGTTCGCGCCGGGGCTGACGGCCACGTTCGCCGGCGGCCTGCCGGTCA
GGGTCCGCCGGCGAGCGCGC------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3B_1073
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------GTGGCCGGCGCCTTCTTCGCGCTCGCGGCGTGCACCGTGGCGCTCGCCGCCCTCCTGGCCGTGGCGCGCACGC
GCCCGCCGTGGTGGTGCGACTGCGCGGTCTGCGAGGCCTACCTCACGGCGTCGTGGGCAGGCGAGTTCGACAACCTCTGC
GACTGGTACGCGCACCTGCTGCGCCGCTCGCCGTCGCAGACCGTGCACGTGCACGTGCTCCGCAACGTGCTCACAGCCAA
CCCCGTCACCGTCGACCACATGCTGCGCGCGCGCTTCGATAACTACCCCAAGGGCAAGCCCTTCTCCGCCATCCTCGCCG
ACCTGCTCGGCCGCGGGATCTTTAACGTCGACGGAGACGCGTGGCTGTTCCAGCGGAAGCTCGCCGCGGCCGAGCTTGCG
TCCCCGGCGCTCAGGGCTTTCGCCTCGGGCGTCGTCGCCTCCGAGCTGCGGGGCCGTCTCGTTCCCCTGCTTGACTCTGC
ATGTTCCC---------------ACGACGACGACGGTGGCAAGGTGCTGGACCTGCAGGACGTGTTCCGTCGCTTCGCCT
TCGACTGCATATGCAAGATCTCCTTCGGCCTCGACCCGGGCTGCCTCGAGCTGTCCATGCCGGTATCGGCGTTCGTTGAC
GCGTTCGACACGGCGTCGATGCTCTCAGCGAGGCGCGCGACCGCCCCGTTGCAGATCATATGGCGGCTGAAGCGGTTCTT
CAACGTCGGGGACGAGAGAAAGCTCCGGGAATCCGTGCGCCTCGTCGACGGGTTCGCCGCGGAGGTCACCCGGCAACGAC
ACAAGCTCGGCGGCGCCGCG---TCCGGCAGCGACCTCCTGTCGCGGTTCATGGGCTCCATCAG---------------C
GACGAGAAGTACCTCAGGGACATCGTCGTCAGTTTCGTGCTCGCCGGCCGCGACACAGTCGCCTCAGCGCTGACCGCCTT
CTTCCTGCTCCTCTCCGATCACCCGGAGGTCGCCGCCGCCATCCGGGACGAGGTGTCACGCGTCGC------------GG
GCGACGACGACAACGACCGGCCGAGCTTCAG---CAAGCTCAAGGACATGCACTACGTGCACGCGGCGCTGTACGAGAGC
ATGCGGCTGTTCCCGCCGGTGCAGTTCGACTCCAAGTTCGCGGCGGGCGACGACACGCTCCCGGACGGCACGGCGGTGGC
CAAGGGCACCCGGGTCACCTACCACGCCTACGCCATGGGCCGGATGGAGTCCGTGTGGGGCCCCGACTGCTCCGAGTTCC
GGCCCGAGCGGTGGCTCCGCGA------CGGGCAGTTCGTCCCGGTGAGCCCGTACCGGTACCCGGTGTTCCAGGCCGGC
GTGCGCGTCTGCGTCGGCAAGGACCTCGCGCTCATGGAGATGAAGGCCGTCATCGTCGCCGTCGTCCGCAGCTTCGACAT
CGAGGCGATCGGCCGGAGCTCGCGCCGGCCCAAGTTCGCGCCGGGGCTGACGGCCACGTTCGCCGGCGGGTTGCCGGTCA
GGGTCCGCCGGCGACCGCG-------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3D_1073
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------GTGGCCGGCGCCTTCTTCGCGCTCGCGGCGTGCACCGTGGCGCTCGCCGCCCTGCTGGCCGTGGCGCGCACGC
GCCCGCCGTGGTGGTGCGACTGCGCCGTCTGCGAGGCCTACCTCACGGCGTCCTGGGCCGGCGAGTTCGACAACCTCTGC
GACTGGTATGCGCACCTGCTGCGCCGCTCGCCGTCGCAGACCGTGCACGTCCACGTGCTCCGCAACGTGCTCACCGCCAA
CCCCGTCACCGTCGATCACATGCTGCGCGCGCGCTTCGATAACTACCCCAAGGGCAAGCCCTTCTCCGCCATCCTCGCCG
ACCTGCTCGGCCGCGGGATCTTCAACGTCGACGGGGACGCGTGGCTGTTCCAGCGGAAGCTCGCCGCGGCTGAGCTGGCC
TCCCCGGCGCTCAGGGCTTTCGCCTCCGGCGTCGTGGCCTCCGAGCTGCGGGGCCGTCTCGTTCCCCTGCTTGACTCTGC
ATGTTCCCACGACGACGACGACGACGACGACGACGGTGGCAAGGTGCTGGACCTGCAGGACGTCTTCCGTCGCTTCGCCT
TCGACTGCATATGCAAGATCTCCTTCGGCCTCGACCCGGGCTGCCTCGAGCTGTCCATGCCGGTATCGGCGTTCGTGGAC
GCGTTCGACACGGCGTCCATGCTCTCTGCGAGGCGCGCCACCGCGCCGTTGCAGATCATATGGCGCCTGAAGCGGTTCTT
CAACGTCGGGGACGAGAGAAAGCTCCGGGAATCCGTGCGCCTCGTCGACGGGTTCGCCGCGGAGGTCACGCGGCAACGAC
ACAAGCTCGGCGGCGCCGCG---TCCGGCAGCGACCTCCTGTCGCGGTTCATGGGCTCCATCAG---------------C
GACGAGAAGTACCTCAGGGACATCGTCGTCAGCTTCATGCTCGCCGGCCGCGACACCATCGCCTCAGCGCTGACCGCCTT
CTTCCTGCTCCTCTCCGATCACCCGGAGGTCGCCGCGGCCATCCGGGACGAGGTGTCACGCGTCGC------------GG
GCGACGACGACAACGGCCGGCCGAGCTTCAG---CAAGCTCAAGGACATGCACTACGTGCACGCGGCGCTGTACGAGAGC
ATGCGGCTGTTCCCGCCGGTGCAGTTCGACTCCAAGTTCGCGGCGGGCGACGACACGCTCCCGGACGGCACGGCCGTGGC
CAAGGGCACGCGGGTCACCTACCACGCCTACGCCATGGGGCGGATGGAGTCCGTGTGGGGCCCCGACTGCTCCGAGTTCC
GGCCCGAGCGGTGGCTCCGCGA------CGGGCAGTTCGTCCCGGTGAGCCCGTACCGGTACCCGGTGTTCCAGGCCGGC
GTGCGCGTCTGCGTCGGCAAGGACCTCGCGCTCATGGAGATGAAGGCCGTCATCGTCGCCGTCGTCCGGGGCTTCGACAT
CGAGGCGATCGACCGGAGCTCGCGCCGGCCCAAGTTCGCGCCGGGGCTGACGGCCACGTTCGCCGGCGGGTTGCCGGTCA
GGGTTCGCCGGCGAGGGCGTCCGGCGAGCGGGC-----------------------------------------------
--------------------------------------------------------------------------------
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------
>chr4D_1182
--------------------------------------------------------------------------------
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------------------------------------CGTACCTCACGGGGTCGTGGGCGCGGGACTTCACCAACCTCGGC
GACTGGTACGCACACCTGCTCCGCTGCTCCCCGACCGGCACCGTGGCCGTCCACGTCCTCGGCTGCACCATCACCGCCAA
CCCGGCCAACGTCGAGCACATGCTCCACACCCGCTTCGACAACTTCCCCAAGGGGAAGCCCTTCGCCGCTGTCCTCGGCG
ACCTCCTCGGCGGCGGCATCTTCAACGTCGACGGCGACGCCTGGCGCCACCAGCGCAAGATGGCCAGCCTCGAGCTCGGC
AGCGTCGCGGTGCGCTCCTACGCGTACGGCATCGTCGCCGAGGAAGTGGAGGCGCGCCTCCTGCCACTGCT---------
------------------CGCCGACGCCGCCGACAATGGCAGGGTGGTCGACCTCCAGGACGTGTTCCGGCGCTTCGCTT
TCGACACCATCTGCAAGATCTCCTTCGGACTAGACCCGGGCTGCCTCGAGCTCGACATGCCCATGTCCAAGCTCGCCGCC
GCGTTCGACACCGCCTCGCGGCTATCCGCCATGCGCGGCGCGGCGGCGTCGCCCCTGGTGTGGAGGGTAAAGCGGCTGCT
GAACGTCGGCTCCGAGAGGGAGCTCAGGAAGTCCATCCGCCTCGTCGACGAGCTCGCGGCGGCCATGATAAGGCAGCGCC
GGAAGCTGGGCGTCGCCGGGA------GCCACGACCTCCTGTCCCGGTTCATGGCCTCGGAGGCGCACGGCACCGCCGTC
GACGACAAGTACCTCCGCGACATCGTGGTCAGCTTCCTCCTCGCCGGACGCGACACGGTGTCCTCCGCGCTCACCACCAT
CTTCATGCTCCTCTCCAAGAACCCCGCGGTGGCGGCCGCCGTGCGCGCGGAGGCCGCCGCCGGCGA------------GA
AGACAAGGACAGCGTCGAAGA---CCACGTACGAGCAGCTCAAGTCCCTCCACTACACCCACGCGGTGCTGCACGAGAAC
ATGCGGCTGTTCCCGCCGGTGCAGTTCGACTCCAAGTTCTGCGCCGCCGACGACGTGCTCCCGGACGGCACGTACGTGAC
CGCCGGGGCTCGCGTGATGTACCACCCCTACGCCATGGGGCGCATGCCCCGCATTTGGGGCGACGACTGCGAGAAGTTCC
GGCCGGAGCGGTGGCTGACGGGCCCCGGCGGGACGTTCGTGCCGGAGAGCCTGTACAGGTACCCGGTATTCCAGGCTGGG
CTCCGCGTGTGCCTCGGCAAGGAGCTCGCCGTGATGGAGATGAAGGCGGTGAGCGTGGCCGTGGTGAAGCAGTTCGACGT
GGAGGTGGTTGGGCACAAGGGCGCCGTGCCCAGGTTCGCGCCTGGTCTGACGGC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr4A_1184
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------TACCTCACGGGGTCGTGGGCGCGGGACTTCACCAACCTCGGC
GACTGGTACGCACATCTGCTCCGCTGCTCCCCGACCGGCACCGTGGCCGTCCACGTCCTCGGCTGTACCATCACCGCCAA
CCCGGCCAACGTCGAGCACATGCTCCACACGCGCTTCGACAACTTCCCCAAAGGGAAGCCCTTCGCCGCCGTCCTCGGCG
ACCTCCTCGGCGGCGGCATCTTCAACGTCGACGGCGACGCCTGGCGCCACCAGCGCAAGATGGCCAGCCTCGAGCTCGGC
AGCGTCGCGGTGCGCTCCTACGCGTACGGCATCGTTGCCGAGGAAGTGGAGGCGCGCCTCCTGCCACTGCT---------
------------------CGCCGACGCCGCCGACAATGGCAGGGTGGTCGACCTCCAGGACGTGTTCCGGCGCTTCGCTT
TCGACACCATCTGCAAGATCTCCTTCGGACTAGACCCGGGCTGCCTCGAGCTCGACATGCCCATGTCCAAGCTCGCCGCC
GCGTTCGACACCGCCTCGCGGCTATCCGCCATGCGCGGCGCGGCGGCGTCGCCCCTGGTGTGGAGGGTAAAGCGGCTGCT
GAACGTCGGCTCCGAGAGGGAGCTCAGGAAGTCCATCCGCCTCGTCGACGAGCTCGCGGCGGCCATGATAAGGCAGCGCC
GGAAGCTGGGCGTCGCCGGGA------GCCACGACCTCCTGTCCCGGTTCATGGCCTCGGAGGCGCACGGCACCGCCGTC
GACGACAAGTACCTCCGCGACATCGTGGTCAGCTTCCTCCTCGCCGGACGCGACACGGTGTCCTCCGCGCTCACCACCAT
CTTCATGCTGCTCTCCAAGAACCCCGCGGTGGCGGCCGCCATGCGCGCGGAGGCCGCCGGCGGCGA------------GA
AGACAAGGACAGCGTCGAAGA---CCACGTACGAGCACCTCAAGTCCCTCCACTACACACACGCGGTGCTGCACGAGAAC
ATGCGGCTGTTCCCGCCGGTGCAGTTCGACTCCAAGTTCTGCGCCGCCGACGACGTGCTCCCGGACGGCACGTACGTGAC
TGCCGGCGCGCGCGTGATGTACCACCCCTACGCCATGGGGCGCATGCCCCGCATTTGGGGCGACGACTGCGAGAAGTTCC
GGCCGGAGCGGTGGCTGACGGGTCCTGGCGGGACGTTCATGCCGGAGAGCCTGTACAGGTACCCGGTGTTCCAGGCTGGG
CTCCGCGTGTGCCTCGGCAAGGAGCTCGCCGTGATGGAGATGAAGGCGGTGAGCGTTGCCGTGGT---------------
--------------------------------------------------------------------------------
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------
>SNPs
SSS--SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---
----S-----S--S------------------------------SS----------------------------------
------------------------S-------------------------------------S-----------------
-------------S-----S----------------S-------------------------------------------
--------------------------------------------------------------S-S---S---------S-
----------------------------S------------------------------------------S---S----
---------S-------------------------------S--------------------S-----------------
--S------------------------------------------------------S-----------SS---------
----------------------------------S------S--------------------------S-----------
--------------------------SS-------------S--------------------------------------
--------------------------------------------------------------------------------
----------------------------S--------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
-------S------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
---------------------------------------S-------------------S--------------------
--S-----------------------------------------S-------SS--------------------------
-----------------------------------S--------------------------------------------
---------------------------------------------------------S-----------------S----
----S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S----------------
------------S-----S----S-S------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_124
--------------------------------------------------------------------------------
------------------------CTCGAGAAGCCGCAGATCAA------------------------------------
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------
>reverse_1550
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------AGTCGTTGCCTCCGAACTG--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>forward_125
--------------------------------------------------------------------------------
-------------------------TCGAGAAGCCGCAGATCAAC-----------------------------------
--------------------------------------------------------------------------------
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------
>reverse_2420
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------AGACAACCAGTTCGTGCC-------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------
>forward_2095
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------------GCCTT
CTTCCTGCTCCTCTG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>reverse_3627
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------CCAACCCTCTGCATGTCACT----------------------------------
------
