Multiple sequence alignment - TraesCS1D01G272600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G272600 chr1D 100.000 3860 0 0 1 3860 366477973 366474114 0.000000e+00 7129.0
1 TraesCS1D01G272600 chr1D 88.172 93 8 2 211 301 439744273 439744364 1.470000e-19 108.0
2 TraesCS1D01G272600 chr1A 93.470 1761 73 17 2076 3830 465496642 465498366 0.000000e+00 2577.0
3 TraesCS1D01G272600 chr1A 90.137 1166 63 25 415 1554 465495178 465496317 0.000000e+00 1469.0
4 TraesCS1D01G272600 chr1A 94.505 182 9 1 1540 1721 465496334 465496514 2.940000e-71 279.0
5 TraesCS1D01G272600 chr1A 90.148 203 16 4 1 201 495310601 495310801 1.060000e-65 261.0
6 TraesCS1D01G272600 chr1B 93.124 1338 51 25 1913 3231 491232167 491233482 0.000000e+00 1923.0
7 TraesCS1D01G272600 chr1B 91.273 1100 64 17 620 1705 491230797 491231878 0.000000e+00 1471.0
8 TraesCS1D01G272600 chr1B 90.000 620 48 9 3217 3830 491233781 491234392 0.000000e+00 789.0
9 TraesCS1D01G272600 chr1B 91.441 222 9 5 369 590 491230379 491230590 2.920000e-76 296.0
10 TraesCS1D01G272600 chr1B 90.000 50 1 4 3812 3860 496723867 496723821 1.160000e-05 62.1
11 TraesCS1D01G272600 chr5D 91.324 219 13 5 1 217 449133790 449134004 1.050000e-75 294.0
12 TraesCS1D01G272600 chr5D 93.506 154 10 0 1 154 396988715 396988562 3.000000e-56 230.0
13 TraesCS1D01G272600 chr5D 93.506 154 10 0 1 154 511614262 511614415 3.000000e-56 230.0
14 TraesCS1D01G272600 chr5D 90.909 165 13 2 1 163 489243222 489243058 1.810000e-53 220.0
15 TraesCS1D01G272600 chr5D 91.398 93 6 1 211 301 424174783 424174875 4.050000e-25 126.0
16 TraesCS1D01G272600 chr5D 97.561 41 0 1 3820 3860 253371903 253371864 6.920000e-08 69.4
17 TraesCS1D01G272600 chr5D 100.000 29 0 0 354 382 404256245 404256273 2.000000e-03 54.7
18 TraesCS1D01G272600 chr3D 83.735 332 30 18 2302 2610 486050780 486050450 3.770000e-75 292.0
19 TraesCS1D01G272600 chr3D 89.474 95 7 3 199 292 134843779 134843871 2.440000e-22 117.0
20 TraesCS1D01G272600 chr3D 86.667 75 5 4 1127 1200 486052345 486052275 1.150000e-10 78.7
21 TraesCS1D01G272600 chr3A 93.367 196 12 1 2303 2497 629228106 629227911 4.880000e-74 289.0
22 TraesCS1D01G272600 chr5A 89.778 225 21 2 81 305 78253743 78253521 1.750000e-73 287.0
23 TraesCS1D01G272600 chr3B 88.841 233 18 8 2303 2530 648747022 648746793 2.940000e-71 279.0
24 TraesCS1D01G272600 chr3B 86.667 75 5 4 1127 1200 648748936 648748866 1.150000e-10 78.7
25 TraesCS1D01G272600 chr4D 95.570 158 7 0 1 158 66511474 66511631 1.780000e-63 254.0
26 TraesCS1D01G272600 chr4D 94.805 154 7 1 1 154 35141244 35141092 4.980000e-59 239.0
27 TraesCS1D01G272600 chr7B 89.785 186 17 2 1 186 673281213 673281396 1.790000e-58 237.0
28 TraesCS1D01G272600 chr7B 90.196 51 1 4 3811 3860 291458091 291458044 3.220000e-06 63.9
29 TraesCS1D01G272600 chr7B 93.023 43 1 2 3818 3860 281382995 281382955 1.160000e-05 62.1
30 TraesCS1D01G272600 chr6D 85.965 171 24 0 2308 2478 409655563 409655733 2.370000e-42 183.0
31 TraesCS1D01G272600 chr6B 84.146 164 26 0 2315 2478 615167408 615167571 3.990000e-35 159.0
32 TraesCS1D01G272600 chr6B 82.927 164 28 0 2315 2478 615230660 615230823 8.640000e-32 148.0
33 TraesCS1D01G272600 chr6B 90.000 50 1 4 3812 3860 690821362 690821408 1.160000e-05 62.1
34 TraesCS1D01G272600 chr2D 91.765 85 5 2 206 290 17203223 17203141 2.440000e-22 117.0
35 TraesCS1D01G272600 chr2D 97.500 40 0 1 3820 3859 178491461 178491499 2.490000e-07 67.6
36 TraesCS1D01G272600 chr2B 87.500 96 10 2 211 304 46872973 46872878 4.080000e-20 110.0
37 TraesCS1D01G272600 chr4A 100.000 36 0 0 3825 3860 41973751 41973786 2.490000e-07 67.6
38 TraesCS1D01G272600 chr4A 97.368 38 1 0 3823 3860 415861531 415861568 8.950000e-07 65.8
39 TraesCS1D01G272600 chr5B 90.000 50 1 4 3812 3860 392229753 392229707 1.160000e-05 62.1
40 TraesCS1D01G272600 chr2A 96.970 33 0 1 3100 3131 60805596 60805564 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G272600 chr1D 366474114 366477973 3859 True 7129.000000 7129 100.0000 1 3860 1 chr1D.!!$R1 3859
1 TraesCS1D01G272600 chr1A 465495178 465498366 3188 False 1441.666667 2577 92.7040 415 3830 3 chr1A.!!$F2 3415
2 TraesCS1D01G272600 chr1B 491230379 491234392 4013 False 1119.750000 1923 91.4595 369 3830 4 chr1B.!!$F1 3461

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 813 0.317103 CTGATGGGTCGTCGATCGTC 60.317 60.0 15.94 8.82 40.8 4.20 F
1965 2377 0.616371 CAAATACACCGACCTCCCCA 59.384 55.0 0.00 0.00 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2168 2580 0.396435 TCCTGCCGAGCAAGAAGAAA 59.604 50.0 0.35 0.0 38.41 2.52 R
3004 3438 0.443869 CATTACAGTGCTGTGGCGTC 59.556 55.0 14.44 0.0 44.63 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.090588 CGGCGGCTAGGGTTTGGA 62.091 66.667 7.61 0.00 0.00 3.53
64 65 2.595655 GGCGGCTAGGGTTTGGAT 59.404 61.111 0.00 0.00 0.00 3.41
65 66 1.526225 GGCGGCTAGGGTTTGGATC 60.526 63.158 0.00 0.00 0.00 3.36
66 67 1.887707 GCGGCTAGGGTTTGGATCG 60.888 63.158 0.00 0.00 0.00 3.69
67 68 1.520666 CGGCTAGGGTTTGGATCGT 59.479 57.895 0.00 0.00 0.00 3.73
68 69 0.810031 CGGCTAGGGTTTGGATCGTG 60.810 60.000 0.00 0.00 0.00 4.35
69 70 0.539986 GGCTAGGGTTTGGATCGTGA 59.460 55.000 0.00 0.00 0.00 4.35
70 71 1.141053 GGCTAGGGTTTGGATCGTGAT 59.859 52.381 0.00 0.00 0.00 3.06
71 72 2.421529 GGCTAGGGTTTGGATCGTGATT 60.422 50.000 0.00 0.00 0.00 2.57
72 73 3.181458 GGCTAGGGTTTGGATCGTGATTA 60.181 47.826 0.00 0.00 0.00 1.75
73 74 4.058817 GCTAGGGTTTGGATCGTGATTAG 58.941 47.826 0.00 0.00 0.00 1.73
74 75 3.560636 AGGGTTTGGATCGTGATTAGG 57.439 47.619 0.00 0.00 0.00 2.69
75 76 1.947456 GGGTTTGGATCGTGATTAGGC 59.053 52.381 0.00 0.00 0.00 3.93
76 77 2.421529 GGGTTTGGATCGTGATTAGGCT 60.422 50.000 0.00 0.00 0.00 4.58
77 78 2.614057 GGTTTGGATCGTGATTAGGCTG 59.386 50.000 0.00 0.00 0.00 4.85
78 79 3.531538 GTTTGGATCGTGATTAGGCTGA 58.468 45.455 0.00 0.00 0.00 4.26
79 80 4.130118 GTTTGGATCGTGATTAGGCTGAT 58.870 43.478 0.00 0.00 0.00 2.90
80 81 5.297547 GTTTGGATCGTGATTAGGCTGATA 58.702 41.667 0.00 0.00 0.00 2.15
81 82 4.521130 TGGATCGTGATTAGGCTGATAC 57.479 45.455 0.00 0.00 0.00 2.24
82 83 3.258372 TGGATCGTGATTAGGCTGATACC 59.742 47.826 0.00 0.00 0.00 2.73
83 84 3.258372 GGATCGTGATTAGGCTGATACCA 59.742 47.826 0.00 0.00 0.00 3.25
84 85 4.081420 GGATCGTGATTAGGCTGATACCAT 60.081 45.833 0.00 0.00 0.00 3.55
85 86 4.257267 TCGTGATTAGGCTGATACCATG 57.743 45.455 0.00 0.00 0.00 3.66
86 87 3.641436 TCGTGATTAGGCTGATACCATGT 59.359 43.478 0.00 0.00 0.00 3.21
87 88 4.100963 TCGTGATTAGGCTGATACCATGTT 59.899 41.667 0.00 0.00 0.00 2.71
88 89 5.303333 TCGTGATTAGGCTGATACCATGTTA 59.697 40.000 0.00 0.00 0.00 2.41
89 90 5.635280 CGTGATTAGGCTGATACCATGTTAG 59.365 44.000 0.00 0.00 0.00 2.34
90 91 6.516693 CGTGATTAGGCTGATACCATGTTAGA 60.517 42.308 0.00 0.00 0.00 2.10
91 92 7.217200 GTGATTAGGCTGATACCATGTTAGAA 58.783 38.462 0.00 0.00 0.00 2.10
92 93 7.386299 GTGATTAGGCTGATACCATGTTAGAAG 59.614 40.741 0.00 0.00 0.00 2.85
93 94 4.696479 AGGCTGATACCATGTTAGAAGG 57.304 45.455 0.00 0.00 0.00 3.46
94 95 3.392616 AGGCTGATACCATGTTAGAAGGG 59.607 47.826 0.00 0.00 0.00 3.95
95 96 3.391296 GGCTGATACCATGTTAGAAGGGA 59.609 47.826 0.00 0.00 0.00 4.20
96 97 4.503991 GGCTGATACCATGTTAGAAGGGAG 60.504 50.000 0.00 0.00 0.00 4.30
97 98 4.345257 GCTGATACCATGTTAGAAGGGAGA 59.655 45.833 0.00 0.00 0.00 3.71
98 99 5.510520 GCTGATACCATGTTAGAAGGGAGAG 60.511 48.000 0.00 0.00 0.00 3.20
99 100 5.777449 TGATACCATGTTAGAAGGGAGAGA 58.223 41.667 0.00 0.00 0.00 3.10
100 101 5.835819 TGATACCATGTTAGAAGGGAGAGAG 59.164 44.000 0.00 0.00 0.00 3.20
101 102 4.338795 ACCATGTTAGAAGGGAGAGAGA 57.661 45.455 0.00 0.00 0.00 3.10
102 103 4.285863 ACCATGTTAGAAGGGAGAGAGAG 58.714 47.826 0.00 0.00 0.00 3.20
103 104 3.640967 CCATGTTAGAAGGGAGAGAGAGG 59.359 52.174 0.00 0.00 0.00 3.69
104 105 4.285863 CATGTTAGAAGGGAGAGAGAGGT 58.714 47.826 0.00 0.00 0.00 3.85
105 106 4.405756 TGTTAGAAGGGAGAGAGAGGTT 57.594 45.455 0.00 0.00 0.00 3.50
106 107 4.753186 TGTTAGAAGGGAGAGAGAGGTTT 58.247 43.478 0.00 0.00 0.00 3.27
107 108 4.528596 TGTTAGAAGGGAGAGAGAGGTTTG 59.471 45.833 0.00 0.00 0.00 2.93
108 109 2.545810 AGAAGGGAGAGAGAGGTTTGG 58.454 52.381 0.00 0.00 0.00 3.28
109 110 2.158081 AGAAGGGAGAGAGAGGTTTGGT 60.158 50.000 0.00 0.00 0.00 3.67
110 111 1.650528 AGGGAGAGAGAGGTTTGGTG 58.349 55.000 0.00 0.00 0.00 4.17
111 112 0.615850 GGGAGAGAGAGGTTTGGTGG 59.384 60.000 0.00 0.00 0.00 4.61
112 113 1.645710 GGAGAGAGAGGTTTGGTGGA 58.354 55.000 0.00 0.00 0.00 4.02
113 114 1.978580 GGAGAGAGAGGTTTGGTGGAA 59.021 52.381 0.00 0.00 0.00 3.53
114 115 2.573915 GGAGAGAGAGGTTTGGTGGAAT 59.426 50.000 0.00 0.00 0.00 3.01
115 116 3.775316 GGAGAGAGAGGTTTGGTGGAATA 59.225 47.826 0.00 0.00 0.00 1.75
116 117 4.410555 GGAGAGAGAGGTTTGGTGGAATAT 59.589 45.833 0.00 0.00 0.00 1.28
117 118 5.104318 GGAGAGAGAGGTTTGGTGGAATATT 60.104 44.000 0.00 0.00 0.00 1.28
118 119 6.394345 AGAGAGAGGTTTGGTGGAATATTT 57.606 37.500 0.00 0.00 0.00 1.40
119 120 6.794534 AGAGAGAGGTTTGGTGGAATATTTT 58.205 36.000 0.00 0.00 0.00 1.82
120 121 6.660949 AGAGAGAGGTTTGGTGGAATATTTTG 59.339 38.462 0.00 0.00 0.00 2.44
121 122 6.314917 AGAGAGGTTTGGTGGAATATTTTGT 58.685 36.000 0.00 0.00 0.00 2.83
122 123 6.782494 AGAGAGGTTTGGTGGAATATTTTGTT 59.218 34.615 0.00 0.00 0.00 2.83
123 124 7.947890 AGAGAGGTTTGGTGGAATATTTTGTTA 59.052 33.333 0.00 0.00 0.00 2.41
124 125 8.664669 AGAGGTTTGGTGGAATATTTTGTTAT 57.335 30.769 0.00 0.00 0.00 1.89
125 126 9.762381 AGAGGTTTGGTGGAATATTTTGTTATA 57.238 29.630 0.00 0.00 0.00 0.98
132 133 9.814899 TGGTGGAATATTTTGTTATATTGCTTG 57.185 29.630 0.00 0.00 38.72 4.01
135 136 9.748708 TGGAATATTTTGTTATATTGCTTGAGC 57.251 29.630 0.00 0.00 38.72 4.26
136 137 9.196552 GGAATATTTTGTTATATTGCTTGAGCC 57.803 33.333 0.00 0.00 41.18 4.70
137 138 9.971922 GAATATTTTGTTATATTGCTTGAGCCT 57.028 29.630 0.00 0.00 41.18 4.58
140 141 7.938140 TTTTGTTATATTGCTTGAGCCTAGT 57.062 32.000 0.00 0.00 41.18 2.57
141 142 9.627123 ATTTTGTTATATTGCTTGAGCCTAGTA 57.373 29.630 0.00 0.00 41.18 1.82
142 143 8.662781 TTTGTTATATTGCTTGAGCCTAGTAG 57.337 34.615 0.00 0.00 41.18 2.57
143 144 6.759272 TGTTATATTGCTTGAGCCTAGTAGG 58.241 40.000 12.27 12.27 41.18 3.18
242 243 8.773404 AAGTACATGATTTACTTGGAGTACAC 57.227 34.615 0.00 0.00 38.17 2.90
243 244 7.033791 AGTACATGATTTACTTGGAGTACACG 58.966 38.462 0.00 0.00 28.93 4.49
244 245 6.032956 ACATGATTTACTTGGAGTACACGA 57.967 37.500 0.00 0.00 28.93 4.35
245 246 5.867716 ACATGATTTACTTGGAGTACACGAC 59.132 40.000 0.00 0.00 28.93 4.34
246 247 5.456548 TGATTTACTTGGAGTACACGACA 57.543 39.130 0.00 0.00 28.93 4.35
247 248 5.845103 TGATTTACTTGGAGTACACGACAA 58.155 37.500 0.00 0.00 28.93 3.18
248 249 5.924254 TGATTTACTTGGAGTACACGACAAG 59.076 40.000 13.67 13.67 44.32 3.16
251 252 3.364889 CTTGGAGTACACGACAAGTCA 57.635 47.619 0.00 0.00 36.47 3.41
252 253 3.309388 CTTGGAGTACACGACAAGTCAG 58.691 50.000 0.00 0.00 36.47 3.51
253 254 2.578786 TGGAGTACACGACAAGTCAGA 58.421 47.619 0.00 0.00 0.00 3.27
254 255 2.953648 TGGAGTACACGACAAGTCAGAA 59.046 45.455 0.00 0.00 0.00 3.02
255 256 3.572682 TGGAGTACACGACAAGTCAGAAT 59.427 43.478 0.00 0.00 0.00 2.40
256 257 4.763279 TGGAGTACACGACAAGTCAGAATA 59.237 41.667 0.00 0.00 0.00 1.75
257 258 5.094134 GGAGTACACGACAAGTCAGAATAC 58.906 45.833 0.00 0.00 0.00 1.89
258 259 5.106237 GGAGTACACGACAAGTCAGAATACT 60.106 44.000 0.00 2.83 0.00 2.12
259 260 6.328641 AGTACACGACAAGTCAGAATACTT 57.671 37.500 0.00 0.00 40.33 2.24
260 261 6.380190 AGTACACGACAAGTCAGAATACTTC 58.620 40.000 0.00 0.00 37.61 3.01
261 262 4.557205 ACACGACAAGTCAGAATACTTCC 58.443 43.478 0.72 0.00 37.61 3.46
262 263 4.281182 ACACGACAAGTCAGAATACTTCCT 59.719 41.667 0.72 0.00 37.61 3.36
263 264 5.475909 ACACGACAAGTCAGAATACTTCCTA 59.524 40.000 0.72 0.00 37.61 2.94
264 265 6.030849 CACGACAAGTCAGAATACTTCCTAG 58.969 44.000 0.72 0.00 37.61 3.02
265 266 5.711036 ACGACAAGTCAGAATACTTCCTAGT 59.289 40.000 0.72 0.00 37.61 2.57
266 267 6.208994 ACGACAAGTCAGAATACTTCCTAGTT 59.791 38.462 0.72 0.00 37.61 2.24
267 268 7.091443 CGACAAGTCAGAATACTTCCTAGTTT 58.909 38.462 0.72 0.00 37.61 2.66
268 269 8.242053 CGACAAGTCAGAATACTTCCTAGTTTA 58.758 37.037 0.72 0.00 37.61 2.01
271 272 9.535878 CAAGTCAGAATACTTCCTAGTTTATCC 57.464 37.037 0.00 0.00 37.61 2.59
272 273 9.495382 AAGTCAGAATACTTCCTAGTTTATCCT 57.505 33.333 0.00 0.00 34.60 3.24
301 302 9.784531 ATTTCCTAATACAATCATGGTACTCAG 57.215 33.333 0.00 0.00 0.00 3.35
302 303 6.759272 TCCTAATACAATCATGGTACTCAGC 58.241 40.000 0.00 0.00 0.00 4.26
303 304 6.326323 TCCTAATACAATCATGGTACTCAGCA 59.674 38.462 0.00 0.00 36.41 4.41
304 305 6.425114 CCTAATACAATCATGGTACTCAGCAC 59.575 42.308 0.00 0.00 34.37 4.40
305 306 3.988976 ACAATCATGGTACTCAGCACT 57.011 42.857 0.00 0.00 34.37 4.40
306 307 6.731292 ATACAATCATGGTACTCAGCACTA 57.269 37.500 0.00 0.00 34.37 2.74
307 308 5.420725 ACAATCATGGTACTCAGCACTAA 57.579 39.130 0.00 0.00 34.37 2.24
308 309 5.994250 ACAATCATGGTACTCAGCACTAAT 58.006 37.500 0.00 0.00 34.37 1.73
309 310 5.819379 ACAATCATGGTACTCAGCACTAATG 59.181 40.000 0.00 0.00 34.37 1.90
310 311 5.876651 ATCATGGTACTCAGCACTAATGA 57.123 39.130 0.00 0.00 34.37 2.57
311 312 5.876651 TCATGGTACTCAGCACTAATGAT 57.123 39.130 0.00 0.00 34.37 2.45
312 313 5.847304 TCATGGTACTCAGCACTAATGATC 58.153 41.667 0.00 0.00 34.37 2.92
313 314 4.672587 TGGTACTCAGCACTAATGATCC 57.327 45.455 0.00 0.00 0.00 3.36
314 315 4.030216 TGGTACTCAGCACTAATGATCCA 58.970 43.478 0.00 0.00 0.00 3.41
315 316 4.100035 TGGTACTCAGCACTAATGATCCAG 59.900 45.833 0.00 0.00 0.00 3.86
316 317 3.191078 ACTCAGCACTAATGATCCAGC 57.809 47.619 0.00 0.00 0.00 4.85
317 318 2.502947 ACTCAGCACTAATGATCCAGCA 59.497 45.455 0.00 0.00 0.00 4.41
318 319 3.054875 ACTCAGCACTAATGATCCAGCAA 60.055 43.478 0.00 0.00 0.00 3.91
319 320 3.943381 CTCAGCACTAATGATCCAGCAAA 59.057 43.478 0.00 0.00 0.00 3.68
320 321 4.334552 TCAGCACTAATGATCCAGCAAAA 58.665 39.130 0.00 0.00 0.00 2.44
321 322 4.951715 TCAGCACTAATGATCCAGCAAAAT 59.048 37.500 0.00 0.00 0.00 1.82
322 323 6.121590 TCAGCACTAATGATCCAGCAAAATA 58.878 36.000 0.00 0.00 0.00 1.40
323 324 6.038603 TCAGCACTAATGATCCAGCAAAATAC 59.961 38.462 0.00 0.00 0.00 1.89
324 325 5.887598 AGCACTAATGATCCAGCAAAATACA 59.112 36.000 0.00 0.00 0.00 2.29
325 326 6.377996 AGCACTAATGATCCAGCAAAATACAA 59.622 34.615 0.00 0.00 0.00 2.41
326 327 7.069085 AGCACTAATGATCCAGCAAAATACAAT 59.931 33.333 0.00 0.00 0.00 2.71
327 328 8.352201 GCACTAATGATCCAGCAAAATACAATA 58.648 33.333 0.00 0.00 0.00 1.90
328 329 9.669353 CACTAATGATCCAGCAAAATACAATAC 57.331 33.333 0.00 0.00 0.00 1.89
329 330 9.407380 ACTAATGATCCAGCAAAATACAATACA 57.593 29.630 0.00 0.00 0.00 2.29
330 331 9.669353 CTAATGATCCAGCAAAATACAATACAC 57.331 33.333 0.00 0.00 0.00 2.90
331 332 6.117911 TGATCCAGCAAAATACAATACACG 57.882 37.500 0.00 0.00 0.00 4.49
332 333 5.645929 TGATCCAGCAAAATACAATACACGT 59.354 36.000 0.00 0.00 0.00 4.49
333 334 6.819146 TGATCCAGCAAAATACAATACACGTA 59.181 34.615 0.00 0.00 0.00 3.57
334 335 6.411630 TCCAGCAAAATACAATACACGTAC 57.588 37.500 0.00 0.00 0.00 3.67
335 336 6.167685 TCCAGCAAAATACAATACACGTACT 58.832 36.000 0.00 0.00 0.00 2.73
336 337 6.091577 TCCAGCAAAATACAATACACGTACTG 59.908 38.462 0.00 0.00 0.00 2.74
337 338 6.128391 CCAGCAAAATACAATACACGTACTGT 60.128 38.462 0.00 0.00 36.82 3.55
338 339 7.063662 CCAGCAAAATACAATACACGTACTGTA 59.936 37.037 1.43 1.43 39.78 2.74
339 340 8.600625 CAGCAAAATACAATACACGTACTGTAT 58.399 33.333 5.68 5.68 46.46 2.29
352 353 8.728337 ACACGTACTGTATTACTATCTCTTCA 57.272 34.615 0.00 0.00 0.00 3.02
353 354 9.339850 ACACGTACTGTATTACTATCTCTTCAT 57.660 33.333 0.00 0.00 0.00 2.57
354 355 9.814507 CACGTACTGTATTACTATCTCTTCATC 57.185 37.037 0.00 0.00 0.00 2.92
355 356 9.557061 ACGTACTGTATTACTATCTCTTCATCA 57.443 33.333 0.00 0.00 0.00 3.07
387 388 6.827727 AGACTTTTTAGGCTAAACTGTCTCA 58.172 36.000 29.16 12.31 36.56 3.27
388 389 6.931840 AGACTTTTTAGGCTAAACTGTCTCAG 59.068 38.462 29.16 16.79 36.56 3.35
586 591 1.131037 CGTTTGCGCTCTCTCTCTCG 61.131 60.000 9.73 0.00 0.00 4.04
599 608 1.163420 TCTCTCGCTCGCCAGATCTC 61.163 60.000 0.00 0.00 0.00 2.75
631 813 0.317103 CTGATGGGTCGTCGATCGTC 60.317 60.000 15.94 8.82 40.80 4.20
844 1030 3.137544 ACTCGAGTACTCATCCTCCATCT 59.862 47.826 18.46 0.00 0.00 2.90
873 1063 1.650825 TGCCTGTGTGCGTGTATATG 58.349 50.000 0.00 0.00 0.00 1.78
897 1087 2.663196 CCAGTCCCCCTCGTGAAC 59.337 66.667 0.00 0.00 0.00 3.18
914 1104 4.299978 GTGAACTTGAACTCGAACTAGCT 58.700 43.478 0.00 0.00 0.00 3.32
917 1107 4.099380 ACTTGAACTCGAACTAGCTAGC 57.901 45.455 20.91 6.62 0.00 3.42
918 1108 3.759618 ACTTGAACTCGAACTAGCTAGCT 59.240 43.478 23.12 23.12 0.00 3.32
919 1109 3.766676 TGAACTCGAACTAGCTAGCTG 57.233 47.619 27.68 18.34 0.00 4.24
920 1110 2.159366 TGAACTCGAACTAGCTAGCTGC 60.159 50.000 27.68 12.32 43.29 5.25
943 1133 1.554160 AGTGGATCCAAGCTGAGAGTG 59.446 52.381 18.20 0.00 0.00 3.51
944 1134 1.277557 GTGGATCCAAGCTGAGAGTGT 59.722 52.381 18.20 0.00 0.00 3.55
946 1136 2.027745 TGGATCCAAGCTGAGAGTGTTC 60.028 50.000 13.46 0.00 0.00 3.18
950 1140 2.298446 TCCAAGCTGAGAGTGTTCTGAG 59.702 50.000 0.00 0.00 37.68 3.35
957 1147 2.227626 TGAGAGTGTTCTGAGCTCGAAG 59.772 50.000 17.43 7.80 32.53 3.79
1004 1198 3.570638 GATCGCGTGCTGCATGCT 61.571 61.111 35.46 23.19 46.97 3.79
1005 1199 3.785252 GATCGCGTGCTGCATGCTG 62.785 63.158 35.46 28.90 46.97 4.41
1321 1518 0.659957 GGATTGAGACTCATTGCGGC 59.340 55.000 5.87 0.00 0.00 6.53
1340 1537 1.727857 GCCGCTCGTTGTTTATTGTGG 60.728 52.381 0.00 0.00 0.00 4.17
1470 1677 5.608676 TTATAATTGTGAAACGTTCGGCA 57.391 34.783 0.00 0.00 42.39 5.69
1493 1700 1.126113 CATGTGTTAGTCGTGCGGAAC 59.874 52.381 0.00 0.00 0.00 3.62
1558 1795 3.071167 CCCCCTAGTATAAGTGTTCTGGC 59.929 52.174 0.00 0.00 0.00 4.85
1570 1807 1.303236 TTCTGGCGTGTTCCATGGG 60.303 57.895 13.02 0.00 35.22 4.00
1631 1868 8.076178 AGTTCCATGATAAACAAAGAAAAGACG 58.924 33.333 0.00 0.00 0.00 4.18
1716 1953 8.065557 CAAAAATTGCCTTTTCTTCTGTCTAC 57.934 34.615 0.00 0.00 36.01 2.59
1721 1958 6.377327 TGCCTTTTCTTCTGTCTACTTTTG 57.623 37.500 0.00 0.00 0.00 2.44
1722 1959 6.119536 TGCCTTTTCTTCTGTCTACTTTTGA 58.880 36.000 0.00 0.00 0.00 2.69
1723 1960 6.038271 TGCCTTTTCTTCTGTCTACTTTTGAC 59.962 38.462 0.00 0.00 35.21 3.18
1726 1963 8.125448 CCTTTTCTTCTGTCTACTTTTGACAAG 58.875 37.037 0.00 0.00 42.85 3.16
1727 1964 8.561738 TTTTCTTCTGTCTACTTTTGACAAGT 57.438 30.769 0.00 0.00 42.85 3.16
1728 1965 7.772332 TTCTTCTGTCTACTTTTGACAAGTC 57.228 36.000 0.00 0.00 42.85 3.01
1729 1966 7.113658 TCTTCTGTCTACTTTTGACAAGTCT 57.886 36.000 1.53 0.00 42.85 3.24
1730 1967 7.203910 TCTTCTGTCTACTTTTGACAAGTCTC 58.796 38.462 1.53 0.00 42.85 3.36
1731 1968 5.520632 TCTGTCTACTTTTGACAAGTCTCG 58.479 41.667 1.53 0.00 42.85 4.04
1732 1969 4.617959 TGTCTACTTTTGACAAGTCTCGG 58.382 43.478 1.53 0.00 40.89 4.63
1733 1970 4.098960 TGTCTACTTTTGACAAGTCTCGGT 59.901 41.667 1.53 0.00 40.89 4.69
1737 1974 8.254011 GTCTACTTTTGACAAGTCTCGGTAGAC 61.254 44.444 22.76 22.76 42.93 2.59
1760 2036 6.692486 ACAGAGATTTCGTTATGTCTCAGTT 58.308 36.000 4.32 0.00 39.57 3.16
1764 2040 8.687242 AGAGATTTCGTTATGTCTCAGTTGATA 58.313 33.333 4.32 0.00 39.57 2.15
1768 2044 8.906636 TTTCGTTATGTCTCAGTTGATACTAC 57.093 34.615 0.37 0.00 31.96 2.73
1787 2063 6.239217 ACTACATTCCTGTCATCTTGCATA 57.761 37.500 0.00 0.00 36.79 3.14
1797 2073 6.147985 CCTGTCATCTTGCATAGAGATTCATG 59.852 42.308 0.00 0.00 36.02 3.07
1813 2089 8.706035 AGAGATTCATGCAAAATTTTCTTTTCG 58.294 29.630 0.00 0.00 0.00 3.46
1814 2090 8.369218 AGATTCATGCAAAATTTTCTTTTCGT 57.631 26.923 0.00 0.00 0.00 3.85
1817 2093 8.819152 TTCATGCAAAATTTTCTTTTCGTTTC 57.181 26.923 0.00 0.00 0.00 2.78
1818 2094 7.968246 TCATGCAAAATTTTCTTTTCGTTTCA 58.032 26.923 0.00 0.00 0.00 2.69
1819 2095 7.902403 TCATGCAAAATTTTCTTTTCGTTTCAC 59.098 29.630 0.00 0.00 0.00 3.18
1820 2096 7.121974 TGCAAAATTTTCTTTTCGTTTCACA 57.878 28.000 0.00 0.00 0.00 3.58
1821 2097 7.746929 TGCAAAATTTTCTTTTCGTTTCACAT 58.253 26.923 0.00 0.00 0.00 3.21
1900 2179 9.242477 GAAGAAGAAAAAGACAGAAAAATGAGG 57.758 33.333 0.00 0.00 0.00 3.86
1907 2186 7.468141 AAAGACAGAAAAATGAGGGAATACC 57.532 36.000 0.00 0.00 40.67 2.73
1908 2187 6.139679 AGACAGAAAAATGAGGGAATACCA 57.860 37.500 0.00 0.00 43.89 3.25
1909 2188 6.552008 AGACAGAAAAATGAGGGAATACCAA 58.448 36.000 0.00 0.00 43.89 3.67
1910 2189 7.010160 AGACAGAAAAATGAGGGAATACCAAA 58.990 34.615 0.00 0.00 43.89 3.28
1911 2190 6.993079 ACAGAAAAATGAGGGAATACCAAAC 58.007 36.000 0.00 0.00 43.89 2.93
1918 2330 8.940397 AAATGAGGGAATACCAAACTATATGG 57.060 34.615 0.00 0.00 43.89 2.74
1952 2364 3.723764 CACTCGTGCAACACAACAAATAC 59.276 43.478 0.00 0.00 35.74 1.89
1956 2368 2.786578 GTGCAACACAACAAATACACCG 59.213 45.455 0.00 0.00 36.32 4.94
1965 2377 0.616371 CAAATACACCGACCTCCCCA 59.384 55.000 0.00 0.00 0.00 4.96
1984 2396 3.817084 CCCAATGTATACCAGCACATGAG 59.183 47.826 0.00 0.00 35.59 2.90
2031 2443 1.517257 GCCGGTCGACACAGATGAG 60.517 63.158 18.91 0.00 0.00 2.90
2046 2458 2.932498 GATGAGCGCATCTCTCACTAG 58.068 52.381 21.58 0.00 45.93 2.57
2049 2461 3.744660 TGAGCGCATCTCTCACTAGATA 58.255 45.455 11.47 0.00 42.38 1.98
2050 2462 4.331108 TGAGCGCATCTCTCACTAGATAT 58.669 43.478 11.47 0.00 42.38 1.63
2051 2463 5.491982 TGAGCGCATCTCTCACTAGATATA 58.508 41.667 11.47 0.00 42.38 0.86
2052 2464 6.118852 TGAGCGCATCTCTCACTAGATATAT 58.881 40.000 11.47 0.00 42.38 0.86
2053 2465 6.038050 TGAGCGCATCTCTCACTAGATATATG 59.962 42.308 11.47 0.00 42.38 1.78
2168 2580 6.568869 GCGCTTATATAGACCATCATCTTCT 58.431 40.000 0.00 0.00 0.00 2.85
2682 3115 2.513204 TACTCGCTCCCGGAGTCG 60.513 66.667 16.09 17.97 33.22 4.18
2683 3116 2.919960 CTACTCGCTCCCGGAGTCGA 62.920 65.000 23.64 23.64 36.49 4.20
2718 3151 4.357947 GTGCCGTCCTCTGCGTCA 62.358 66.667 0.00 0.00 0.00 4.35
2739 3172 4.747529 GCTTCGGGTTACGGCGGT 62.748 66.667 13.24 1.39 44.45 5.68
2882 3316 6.319399 AGTGGTCGTTTCTTGTTTACTTTTG 58.681 36.000 0.00 0.00 0.00 2.44
2901 3335 7.896811 ACTTTTGTCCTTCAAGAAAAAGAGTT 58.103 30.769 18.94 3.19 39.21 3.01
2902 3336 7.814587 ACTTTTGTCCTTCAAGAAAAAGAGTTG 59.185 33.333 18.94 2.85 39.21 3.16
2944 3378 4.373116 AGACGTGCGCCGATGGTT 62.373 61.111 22.10 2.17 40.70 3.67
2945 3379 3.849953 GACGTGCGCCGATGGTTC 61.850 66.667 22.10 7.48 40.70 3.62
3004 3438 3.708210 TGGAAGCCAGAGTACGGG 58.292 61.111 0.00 0.00 34.56 5.28
3154 3590 7.412137 TTGTCGCTACAATGATCTGATAATG 57.588 36.000 0.00 0.00 40.69 1.90
3164 3600 4.648651 TGATCTGATAATGTCCTGGCATG 58.351 43.478 4.71 0.00 0.00 4.06
3210 3646 6.655078 AGAAAGGTTTATTCACAGTTGCAT 57.345 33.333 0.00 0.00 0.00 3.96
3221 3657 6.826893 TTCACAGTTGCATAAAGAAAAAGC 57.173 33.333 0.00 0.00 0.00 3.51
3227 3663 5.985530 AGTTGCATAAAGAAAAAGCCAAGTC 59.014 36.000 0.00 0.00 0.00 3.01
3231 3667 5.107875 GCATAAAGAAAAAGCCAAGTCGTTG 60.108 40.000 0.00 0.00 0.00 4.10
3251 4000 4.022413 TGGTCGAATGGTAAAATGGACA 57.978 40.909 0.00 0.00 0.00 4.02
3346 4098 1.723288 CCATCCTTCCTCTACCTCCC 58.277 60.000 0.00 0.00 0.00 4.30
3352 4104 2.490168 CCTTCCTCTACCTCCCTCTAGC 60.490 59.091 0.00 0.00 0.00 3.42
3386 4139 7.715249 TGTTCATCTTATTTCTCTATTTCCCGG 59.285 37.037 0.00 0.00 0.00 5.73
3464 4217 1.603455 CGGTGCCTCCCATGTGTTT 60.603 57.895 0.00 0.00 0.00 2.83
3533 4286 1.374252 GACGTTGCCACATCGACCT 60.374 57.895 5.17 0.00 31.97 3.85
3564 4317 0.690762 GGGGGCGCTTCTATCCATTA 59.309 55.000 7.64 0.00 0.00 1.90
3620 4373 4.677182 AGCTTCACCCAAAACCAATAGAT 58.323 39.130 0.00 0.00 0.00 1.98
3643 4396 4.119862 GGGAAAGAAAGTTTCAAGCAACC 58.880 43.478 17.65 10.77 0.00 3.77
3659 4412 2.227865 GCAACCGAGGATTAGCAAAACA 59.772 45.455 0.00 0.00 0.00 2.83
3812 4567 0.753867 TGCAAGTCGTAACAGGGTGA 59.246 50.000 0.00 0.00 0.00 4.02
3830 4585 4.096532 GGGTGAAGGAAGCTAAAATGCTAC 59.903 45.833 0.00 0.00 43.24 3.58
3831 4586 4.944317 GGTGAAGGAAGCTAAAATGCTACT 59.056 41.667 0.00 0.00 43.24 2.57
3832 4587 5.065346 GGTGAAGGAAGCTAAAATGCTACTC 59.935 44.000 0.00 0.00 43.24 2.59
3833 4588 5.065346 GTGAAGGAAGCTAAAATGCTACTCC 59.935 44.000 0.00 0.00 43.24 3.85
3834 4589 4.157849 AGGAAGCTAAAATGCTACTCCC 57.842 45.455 0.00 0.00 43.24 4.30
3835 4590 3.783082 AGGAAGCTAAAATGCTACTCCCT 59.217 43.478 0.00 0.00 43.24 4.20
3836 4591 4.228438 AGGAAGCTAAAATGCTACTCCCTT 59.772 41.667 0.00 0.00 43.24 3.95
3837 4592 4.576873 GGAAGCTAAAATGCTACTCCCTTC 59.423 45.833 0.00 0.00 43.24 3.46
3838 4593 3.798202 AGCTAAAATGCTACTCCCTTCG 58.202 45.455 0.00 0.00 42.10 3.79
3839 4594 3.197983 AGCTAAAATGCTACTCCCTTCGT 59.802 43.478 0.00 0.00 42.10 3.85
3840 4595 3.556365 GCTAAAATGCTACTCCCTTCGTC 59.444 47.826 0.00 0.00 0.00 4.20
3841 4596 2.693267 AAATGCTACTCCCTTCGTCC 57.307 50.000 0.00 0.00 0.00 4.79
3842 4597 0.831307 AATGCTACTCCCTTCGTCCC 59.169 55.000 0.00 0.00 0.00 4.46
3843 4598 0.325296 ATGCTACTCCCTTCGTCCCA 60.325 55.000 0.00 0.00 0.00 4.37
3844 4599 0.325296 TGCTACTCCCTTCGTCCCAT 60.325 55.000 0.00 0.00 0.00 4.00
3845 4600 1.063492 TGCTACTCCCTTCGTCCCATA 60.063 52.381 0.00 0.00 0.00 2.74
3846 4601 2.037144 GCTACTCCCTTCGTCCCATAA 58.963 52.381 0.00 0.00 0.00 1.90
3847 4602 2.633481 GCTACTCCCTTCGTCCCATAAT 59.367 50.000 0.00 0.00 0.00 1.28
3848 4603 3.830755 GCTACTCCCTTCGTCCCATAATA 59.169 47.826 0.00 0.00 0.00 0.98
3849 4604 4.466726 GCTACTCCCTTCGTCCCATAATAT 59.533 45.833 0.00 0.00 0.00 1.28
3850 4605 5.655532 GCTACTCCCTTCGTCCCATAATATA 59.344 44.000 0.00 0.00 0.00 0.86
3851 4606 6.154021 GCTACTCCCTTCGTCCCATAATATAA 59.846 42.308 0.00 0.00 0.00 0.98
3852 4607 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
3853 4608 6.320518 ACTCCCTTCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
3854 4609 6.437793 ACTCCCTTCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
3855 4610 5.187186 TCCCTTCGTCCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
3856 4611 5.103000 CCTTCGTCCCATAATATAAGAGCG 58.897 45.833 0.00 0.00 0.00 5.03
3857 4612 5.336531 CCTTCGTCCCATAATATAAGAGCGT 60.337 44.000 0.00 0.00 0.00 5.07
3858 4613 5.717078 TCGTCCCATAATATAAGAGCGTT 57.283 39.130 0.00 0.00 0.00 4.84
3859 4614 6.092955 TCGTCCCATAATATAAGAGCGTTT 57.907 37.500 0.00 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.400599 ATCCAAACCCTAGCCGCCG 62.401 63.158 0.00 0.00 0.00 6.46
47 48 1.526225 GATCCAAACCCTAGCCGCC 60.526 63.158 0.00 0.00 0.00 6.13
48 49 1.887707 CGATCCAAACCCTAGCCGC 60.888 63.158 0.00 0.00 0.00 6.53
49 50 0.810031 CACGATCCAAACCCTAGCCG 60.810 60.000 0.00 0.00 0.00 5.52
50 51 0.539986 TCACGATCCAAACCCTAGCC 59.460 55.000 0.00 0.00 0.00 3.93
51 52 2.622064 ATCACGATCCAAACCCTAGC 57.378 50.000 0.00 0.00 0.00 3.42
52 53 4.632153 CCTAATCACGATCCAAACCCTAG 58.368 47.826 0.00 0.00 0.00 3.02
53 54 3.181458 GCCTAATCACGATCCAAACCCTA 60.181 47.826 0.00 0.00 0.00 3.53
54 55 2.421529 GCCTAATCACGATCCAAACCCT 60.422 50.000 0.00 0.00 0.00 4.34
55 56 1.947456 GCCTAATCACGATCCAAACCC 59.053 52.381 0.00 0.00 0.00 4.11
56 57 2.614057 CAGCCTAATCACGATCCAAACC 59.386 50.000 0.00 0.00 0.00 3.27
57 58 3.531538 TCAGCCTAATCACGATCCAAAC 58.468 45.455 0.00 0.00 0.00 2.93
58 59 3.904800 TCAGCCTAATCACGATCCAAA 57.095 42.857 0.00 0.00 0.00 3.28
59 60 4.262463 GGTATCAGCCTAATCACGATCCAA 60.262 45.833 0.00 0.00 0.00 3.53
60 61 3.258372 GGTATCAGCCTAATCACGATCCA 59.742 47.826 0.00 0.00 0.00 3.41
61 62 3.258372 TGGTATCAGCCTAATCACGATCC 59.742 47.826 0.00 0.00 0.00 3.36
62 63 4.521130 TGGTATCAGCCTAATCACGATC 57.479 45.455 0.00 0.00 0.00 3.69
63 64 4.284490 ACATGGTATCAGCCTAATCACGAT 59.716 41.667 0.00 0.00 0.00 3.73
64 65 3.641436 ACATGGTATCAGCCTAATCACGA 59.359 43.478 0.00 0.00 0.00 4.35
65 66 3.995199 ACATGGTATCAGCCTAATCACG 58.005 45.455 0.00 0.00 0.00 4.35
66 67 6.759272 TCTAACATGGTATCAGCCTAATCAC 58.241 40.000 0.00 0.00 0.00 3.06
67 68 6.994421 TCTAACATGGTATCAGCCTAATCA 57.006 37.500 0.00 0.00 0.00 2.57
68 69 6.876257 CCTTCTAACATGGTATCAGCCTAATC 59.124 42.308 0.00 0.00 0.00 1.75
69 70 6.240002 CCCTTCTAACATGGTATCAGCCTAAT 60.240 42.308 0.00 0.00 0.00 1.73
70 71 5.071788 CCCTTCTAACATGGTATCAGCCTAA 59.928 44.000 0.00 0.00 0.00 2.69
71 72 4.593206 CCCTTCTAACATGGTATCAGCCTA 59.407 45.833 0.00 0.00 0.00 3.93
72 73 3.392616 CCCTTCTAACATGGTATCAGCCT 59.607 47.826 0.00 0.00 0.00 4.58
73 74 3.391296 TCCCTTCTAACATGGTATCAGCC 59.609 47.826 0.00 0.00 0.00 4.85
74 75 4.345257 TCTCCCTTCTAACATGGTATCAGC 59.655 45.833 0.00 0.00 0.00 4.26
75 76 5.835819 TCTCTCCCTTCTAACATGGTATCAG 59.164 44.000 0.00 0.00 0.00 2.90
76 77 5.777449 TCTCTCCCTTCTAACATGGTATCA 58.223 41.667 0.00 0.00 0.00 2.15
77 78 6.071984 TCTCTCTCCCTTCTAACATGGTATC 58.928 44.000 0.00 0.00 0.00 2.24
78 79 6.031964 TCTCTCTCCCTTCTAACATGGTAT 57.968 41.667 0.00 0.00 0.00 2.73
79 80 5.450453 CTCTCTCTCCCTTCTAACATGGTA 58.550 45.833 0.00 0.00 0.00 3.25
80 81 4.285863 CTCTCTCTCCCTTCTAACATGGT 58.714 47.826 0.00 0.00 0.00 3.55
81 82 3.640967 CCTCTCTCTCCCTTCTAACATGG 59.359 52.174 0.00 0.00 0.00 3.66
82 83 4.285863 ACCTCTCTCTCCCTTCTAACATG 58.714 47.826 0.00 0.00 0.00 3.21
83 84 4.618378 ACCTCTCTCTCCCTTCTAACAT 57.382 45.455 0.00 0.00 0.00 2.71
84 85 4.405756 AACCTCTCTCTCCCTTCTAACA 57.594 45.455 0.00 0.00 0.00 2.41
85 86 4.081365 CCAAACCTCTCTCTCCCTTCTAAC 60.081 50.000 0.00 0.00 0.00 2.34
86 87 4.097418 CCAAACCTCTCTCTCCCTTCTAA 58.903 47.826 0.00 0.00 0.00 2.10
87 88 3.077695 ACCAAACCTCTCTCTCCCTTCTA 59.922 47.826 0.00 0.00 0.00 2.10
88 89 2.158081 ACCAAACCTCTCTCTCCCTTCT 60.158 50.000 0.00 0.00 0.00 2.85
89 90 2.027653 CACCAAACCTCTCTCTCCCTTC 60.028 54.545 0.00 0.00 0.00 3.46
90 91 1.981495 CACCAAACCTCTCTCTCCCTT 59.019 52.381 0.00 0.00 0.00 3.95
91 92 1.650528 CACCAAACCTCTCTCTCCCT 58.349 55.000 0.00 0.00 0.00 4.20
92 93 0.615850 CCACCAAACCTCTCTCTCCC 59.384 60.000 0.00 0.00 0.00 4.30
93 94 1.645710 TCCACCAAACCTCTCTCTCC 58.354 55.000 0.00 0.00 0.00 3.71
94 95 3.990959 ATTCCACCAAACCTCTCTCTC 57.009 47.619 0.00 0.00 0.00 3.20
95 96 6.394345 AAATATTCCACCAAACCTCTCTCT 57.606 37.500 0.00 0.00 0.00 3.10
96 97 6.434340 ACAAAATATTCCACCAAACCTCTCTC 59.566 38.462 0.00 0.00 0.00 3.20
97 98 6.314917 ACAAAATATTCCACCAAACCTCTCT 58.685 36.000 0.00 0.00 0.00 3.10
98 99 6.590234 ACAAAATATTCCACCAAACCTCTC 57.410 37.500 0.00 0.00 0.00 3.20
99 100 6.994421 AACAAAATATTCCACCAAACCTCT 57.006 33.333 0.00 0.00 0.00 3.69
106 107 9.814899 CAAGCAATATAACAAAATATTCCACCA 57.185 29.630 0.00 0.00 31.17 4.17
109 110 9.748708 GCTCAAGCAATATAACAAAATATTCCA 57.251 29.630 0.00 0.00 41.59 3.53
110 111 9.196552 GGCTCAAGCAATATAACAAAATATTCC 57.803 33.333 4.13 0.00 44.36 3.01
111 112 9.971922 AGGCTCAAGCAATATAACAAAATATTC 57.028 29.630 4.13 0.00 44.36 1.75
114 115 9.627123 ACTAGGCTCAAGCAATATAACAAAATA 57.373 29.630 4.13 0.00 44.36 1.40
115 116 8.525290 ACTAGGCTCAAGCAATATAACAAAAT 57.475 30.769 4.13 0.00 44.36 1.82
116 117 7.938140 ACTAGGCTCAAGCAATATAACAAAA 57.062 32.000 4.13 0.00 44.36 2.44
117 118 7.715249 CCTACTAGGCTCAAGCAATATAACAAA 59.285 37.037 4.13 0.00 44.36 2.83
118 119 7.217200 CCTACTAGGCTCAAGCAATATAACAA 58.783 38.462 4.13 0.00 44.36 2.83
119 120 6.759272 CCTACTAGGCTCAAGCAATATAACA 58.241 40.000 4.13 0.00 44.36 2.41
216 217 9.865321 GTGTACTCCAAGTAAATCATGTACTTA 57.135 33.333 0.00 0.00 39.28 2.24
217 218 7.544566 CGTGTACTCCAAGTAAATCATGTACTT 59.455 37.037 0.00 0.00 41.43 2.24
218 219 7.033791 CGTGTACTCCAAGTAAATCATGTACT 58.966 38.462 0.00 0.00 31.62 2.73
219 220 7.008992 GTCGTGTACTCCAAGTAAATCATGTAC 59.991 40.741 0.00 0.00 31.62 2.90
220 221 7.031372 GTCGTGTACTCCAAGTAAATCATGTA 58.969 38.462 0.00 0.00 31.62 2.29
221 222 5.867716 GTCGTGTACTCCAAGTAAATCATGT 59.132 40.000 0.00 0.00 31.62 3.21
222 223 5.867174 TGTCGTGTACTCCAAGTAAATCATG 59.133 40.000 0.00 0.00 31.62 3.07
223 224 6.032956 TGTCGTGTACTCCAAGTAAATCAT 57.967 37.500 0.00 0.00 31.62 2.45
224 225 5.456548 TGTCGTGTACTCCAAGTAAATCA 57.543 39.130 0.00 0.00 31.62 2.57
225 226 5.924825 ACTTGTCGTGTACTCCAAGTAAATC 59.075 40.000 14.16 0.00 44.08 2.17
226 227 5.850614 ACTTGTCGTGTACTCCAAGTAAAT 58.149 37.500 14.16 0.00 44.08 1.40
227 228 5.163530 TGACTTGTCGTGTACTCCAAGTAAA 60.164 40.000 15.17 7.92 45.43 2.01
228 229 4.338964 TGACTTGTCGTGTACTCCAAGTAA 59.661 41.667 15.17 8.79 45.43 2.24
229 230 3.884693 TGACTTGTCGTGTACTCCAAGTA 59.115 43.478 15.17 6.15 45.43 2.24
231 232 3.004419 TCTGACTTGTCGTGTACTCCAAG 59.996 47.826 10.51 10.51 40.05 3.61
232 233 2.953648 TCTGACTTGTCGTGTACTCCAA 59.046 45.455 0.00 0.00 0.00 3.53
233 234 2.578786 TCTGACTTGTCGTGTACTCCA 58.421 47.619 0.00 0.00 0.00 3.86
234 235 3.637998 TTCTGACTTGTCGTGTACTCC 57.362 47.619 0.00 0.00 0.00 3.85
235 236 5.940595 AGTATTCTGACTTGTCGTGTACTC 58.059 41.667 0.00 0.00 0.00 2.59
236 237 5.961396 AGTATTCTGACTTGTCGTGTACT 57.039 39.130 0.00 0.75 0.00 2.73
237 238 5.572126 GGAAGTATTCTGACTTGTCGTGTAC 59.428 44.000 0.00 0.00 46.56 2.90
238 239 5.475909 AGGAAGTATTCTGACTTGTCGTGTA 59.524 40.000 0.00 0.00 46.56 2.90
239 240 4.281182 AGGAAGTATTCTGACTTGTCGTGT 59.719 41.667 0.00 0.00 46.56 4.49
240 241 4.810790 AGGAAGTATTCTGACTTGTCGTG 58.189 43.478 0.00 0.00 46.56 4.35
241 242 5.711036 ACTAGGAAGTATTCTGACTTGTCGT 59.289 40.000 0.00 0.00 46.56 4.34
242 243 6.197364 ACTAGGAAGTATTCTGACTTGTCG 57.803 41.667 0.00 0.00 46.56 4.35
245 246 9.535878 GGATAAACTAGGAAGTATTCTGACTTG 57.464 37.037 0.00 0.00 46.56 3.16
246 247 9.495382 AGGATAAACTAGGAAGTATTCTGACTT 57.505 33.333 0.00 0.00 46.56 3.01
275 276 9.784531 CTGAGTACCATGATTGTATTAGGAAAT 57.215 33.333 0.00 0.00 0.00 2.17
276 277 7.715249 GCTGAGTACCATGATTGTATTAGGAAA 59.285 37.037 0.00 0.00 0.00 3.13
277 278 7.147567 TGCTGAGTACCATGATTGTATTAGGAA 60.148 37.037 0.00 0.00 0.00 3.36
278 279 6.326323 TGCTGAGTACCATGATTGTATTAGGA 59.674 38.462 0.00 0.00 0.00 2.94
279 280 6.425114 GTGCTGAGTACCATGATTGTATTAGG 59.575 42.308 0.00 0.00 0.00 2.69
280 281 7.212976 AGTGCTGAGTACCATGATTGTATTAG 58.787 38.462 0.00 0.00 0.00 1.73
281 282 7.124573 AGTGCTGAGTACCATGATTGTATTA 57.875 36.000 0.00 0.00 0.00 0.98
282 283 5.994250 AGTGCTGAGTACCATGATTGTATT 58.006 37.500 0.00 0.00 0.00 1.89
283 284 5.620738 AGTGCTGAGTACCATGATTGTAT 57.379 39.130 0.00 0.00 0.00 2.29
284 285 6.538945 TTAGTGCTGAGTACCATGATTGTA 57.461 37.500 0.00 0.00 0.00 2.41
285 286 3.988976 AGTGCTGAGTACCATGATTGT 57.011 42.857 0.00 0.00 0.00 2.71
286 287 6.051074 TCATTAGTGCTGAGTACCATGATTG 58.949 40.000 8.46 0.00 0.00 2.67
287 288 6.239217 TCATTAGTGCTGAGTACCATGATT 57.761 37.500 8.46 0.00 0.00 2.57
288 289 5.876651 TCATTAGTGCTGAGTACCATGAT 57.123 39.130 8.46 0.00 0.00 2.45
289 290 5.221521 GGATCATTAGTGCTGAGTACCATGA 60.222 44.000 13.08 13.08 0.00 3.07
290 291 4.993584 GGATCATTAGTGCTGAGTACCATG 59.006 45.833 0.00 0.84 0.00 3.66
291 292 4.655649 TGGATCATTAGTGCTGAGTACCAT 59.344 41.667 0.00 0.00 0.00 3.55
292 293 4.030216 TGGATCATTAGTGCTGAGTACCA 58.970 43.478 0.00 0.00 0.00 3.25
293 294 4.626042 CTGGATCATTAGTGCTGAGTACC 58.374 47.826 0.00 0.00 0.00 3.34
294 295 4.054671 GCTGGATCATTAGTGCTGAGTAC 58.945 47.826 0.00 0.00 0.00 2.73
295 296 3.706086 TGCTGGATCATTAGTGCTGAGTA 59.294 43.478 0.00 0.00 0.00 2.59
296 297 2.502947 TGCTGGATCATTAGTGCTGAGT 59.497 45.455 0.00 0.00 0.00 3.41
297 298 3.189618 TGCTGGATCATTAGTGCTGAG 57.810 47.619 0.00 0.00 0.00 3.35
298 299 3.632643 TTGCTGGATCATTAGTGCTGA 57.367 42.857 0.00 0.00 0.00 4.26
299 300 4.707030 TTTTGCTGGATCATTAGTGCTG 57.293 40.909 0.00 0.00 0.00 4.41
300 301 5.887598 TGTATTTTGCTGGATCATTAGTGCT 59.112 36.000 0.00 0.00 0.00 4.40
301 302 6.135290 TGTATTTTGCTGGATCATTAGTGC 57.865 37.500 0.00 0.00 0.00 4.40
302 303 9.669353 GTATTGTATTTTGCTGGATCATTAGTG 57.331 33.333 0.00 0.00 0.00 2.74
303 304 9.407380 TGTATTGTATTTTGCTGGATCATTAGT 57.593 29.630 0.00 0.00 0.00 2.24
304 305 9.669353 GTGTATTGTATTTTGCTGGATCATTAG 57.331 33.333 0.00 0.00 0.00 1.73
305 306 8.341903 CGTGTATTGTATTTTGCTGGATCATTA 58.658 33.333 0.00 0.00 0.00 1.90
306 307 7.148086 ACGTGTATTGTATTTTGCTGGATCATT 60.148 33.333 0.00 0.00 0.00 2.57
307 308 6.318648 ACGTGTATTGTATTTTGCTGGATCAT 59.681 34.615 0.00 0.00 0.00 2.45
308 309 5.645929 ACGTGTATTGTATTTTGCTGGATCA 59.354 36.000 0.00 0.00 0.00 2.92
309 310 6.119144 ACGTGTATTGTATTTTGCTGGATC 57.881 37.500 0.00 0.00 0.00 3.36
310 311 6.821665 AGTACGTGTATTGTATTTTGCTGGAT 59.178 34.615 0.00 0.00 0.00 3.41
311 312 6.091577 CAGTACGTGTATTGTATTTTGCTGGA 59.908 38.462 0.00 0.00 0.00 3.86
312 313 6.128391 ACAGTACGTGTATTGTATTTTGCTGG 60.128 38.462 6.40 0.00 37.75 4.85
313 314 6.827641 ACAGTACGTGTATTGTATTTTGCTG 58.172 36.000 6.40 0.00 37.75 4.41
326 327 9.822185 TGAAGAGATAGTAATACAGTACGTGTA 57.178 33.333 0.00 7.37 45.93 2.90
327 328 8.728337 TGAAGAGATAGTAATACAGTACGTGT 57.272 34.615 0.00 3.91 43.86 4.49
328 329 9.814507 GATGAAGAGATAGTAATACAGTACGTG 57.185 37.037 0.00 0.00 0.00 4.49
329 330 9.557061 TGATGAAGAGATAGTAATACAGTACGT 57.443 33.333 0.00 0.00 0.00 3.57
360 361 9.438228 GAGACAGTTTAGCCTAAAAAGTCTTAT 57.562 33.333 22.96 10.18 40.77 1.73
361 362 8.426489 TGAGACAGTTTAGCCTAAAAAGTCTTA 58.574 33.333 22.96 19.01 40.77 2.10
362 363 7.280356 TGAGACAGTTTAGCCTAAAAAGTCTT 58.720 34.615 22.96 13.33 40.77 3.01
363 364 6.827727 TGAGACAGTTTAGCCTAAAAAGTCT 58.172 36.000 22.58 22.58 42.08 3.24
364 365 6.706716 ACTGAGACAGTTTAGCCTAAAAAGTC 59.293 38.462 16.54 16.54 42.59 3.01
365 366 6.592870 ACTGAGACAGTTTAGCCTAAAAAGT 58.407 36.000 0.00 0.74 42.59 2.66
574 579 2.327940 GCGAGCGAGAGAGAGAGC 59.672 66.667 0.00 0.00 0.00 4.09
586 591 0.599728 GGTGATGAGATCTGGCGAGC 60.600 60.000 0.00 0.00 0.00 5.03
599 608 1.884464 CATCAGACGGCCGGTGATG 60.884 63.158 37.45 37.45 41.12 3.07
631 813 2.037136 CCTTCAGAGCAAGTGGGCG 61.037 63.158 0.00 0.00 39.27 6.13
706 888 2.027751 GCTAAGCGGGTAGAGCCG 59.972 66.667 15.63 15.63 38.44 5.52
707 889 1.364536 GAGCTAAGCGGGTAGAGCC 59.635 63.158 9.60 0.00 35.45 4.70
709 891 0.031449 GCTGAGCTAAGCGGGTAGAG 59.969 60.000 7.49 0.00 32.56 2.43
788 974 3.133721 AGAAGAAGATGTAATGCGGCTCT 59.866 43.478 0.00 0.00 0.00 4.09
844 1030 1.406477 GCACACAGGCATGAGATCAGA 60.406 52.381 4.84 0.00 0.00 3.27
897 1087 4.101942 CAGCTAGCTAGTTCGAGTTCAAG 58.898 47.826 18.86 0.00 0.00 3.02
914 1104 2.042464 CTTGGATCCACTAGGCAGCTA 58.958 52.381 15.91 0.00 33.74 3.32
917 1107 0.835941 AGCTTGGATCCACTAGGCAG 59.164 55.000 15.91 9.35 33.74 4.85
918 1108 0.543277 CAGCTTGGATCCACTAGGCA 59.457 55.000 15.91 0.00 33.74 4.75
919 1109 0.833287 TCAGCTTGGATCCACTAGGC 59.167 55.000 15.91 15.93 33.74 3.93
920 1110 2.364970 CTCTCAGCTTGGATCCACTAGG 59.635 54.545 15.91 5.09 0.00 3.02
943 1133 4.099824 GCTAACTACTTCGAGCTCAGAAC 58.900 47.826 15.40 1.01 32.04 3.01
944 1134 3.181509 CGCTAACTACTTCGAGCTCAGAA 60.182 47.826 15.40 16.04 32.60 3.02
946 1136 2.352034 TCGCTAACTACTTCGAGCTCAG 59.648 50.000 15.40 7.04 32.60 3.35
957 1147 1.660896 GCTCGCTAGCTCGCTAACTAC 60.661 57.143 13.93 0.00 45.85 2.73
1321 1518 1.135803 CCCACAATAAACAACGAGCGG 60.136 52.381 0.00 0.00 0.00 5.52
1340 1537 1.135575 CAAGCGCAAACATTCTCCTCC 60.136 52.381 11.47 0.00 0.00 4.30
1452 1655 2.660490 CATGCCGAACGTTTCACAATT 58.340 42.857 0.46 0.00 0.00 2.32
1462 1665 0.445829 TAACACATGCATGCCGAACG 59.554 50.000 26.53 10.39 0.00 3.95
1470 1677 0.721154 CGCACGACTAACACATGCAT 59.279 50.000 0.00 0.00 36.02 3.96
1570 1807 0.881118 TCGTTGCAAGCAAAGGGATC 59.119 50.000 18.04 1.61 37.70 3.36
1631 1868 0.601558 TGGTTCTGACGTAGCACTCC 59.398 55.000 0.00 0.00 0.00 3.85
1709 1946 4.681942 CCGAGACTTGTCAAAAGTAGACAG 59.318 45.833 3.49 0.00 45.72 3.51
1727 1964 3.607741 ACGAAATCTCTGTCTACCGAGA 58.392 45.455 6.69 6.69 40.26 4.04
1728 1965 4.358494 AACGAAATCTCTGTCTACCGAG 57.642 45.455 0.00 0.00 0.00 4.63
1729 1966 5.356190 ACATAACGAAATCTCTGTCTACCGA 59.644 40.000 0.00 0.00 0.00 4.69
1730 1967 5.579718 ACATAACGAAATCTCTGTCTACCG 58.420 41.667 0.00 0.00 0.00 4.02
1731 1968 6.797454 AGACATAACGAAATCTCTGTCTACC 58.203 40.000 1.41 0.00 40.97 3.18
1732 1969 7.473366 TGAGACATAACGAAATCTCTGTCTAC 58.527 38.462 3.23 0.00 42.35 2.59
1733 1970 7.337184 ACTGAGACATAACGAAATCTCTGTCTA 59.663 37.037 3.23 0.00 43.01 2.59
1737 1974 6.808704 TCAACTGAGACATAACGAAATCTCTG 59.191 38.462 0.00 0.00 40.82 3.35
1738 1975 6.925211 TCAACTGAGACATAACGAAATCTCT 58.075 36.000 0.00 0.00 38.72 3.10
1739 1976 7.763172 ATCAACTGAGACATAACGAAATCTC 57.237 36.000 0.00 0.00 38.46 2.75
1760 2036 6.127083 TGCAAGATGACAGGAATGTAGTATCA 60.127 38.462 0.00 0.00 0.00 2.15
1764 2040 4.558226 TGCAAGATGACAGGAATGTAGT 57.442 40.909 0.00 0.00 0.00 2.73
1768 2044 5.608449 TCTCTATGCAAGATGACAGGAATG 58.392 41.667 0.00 0.00 32.41 2.67
1787 2063 8.706035 CGAAAAGAAAATTTTGCATGAATCTCT 58.294 29.630 8.47 0.00 0.00 3.10
1797 2073 8.599876 AATGTGAAACGAAAAGAAAATTTTGC 57.400 26.923 8.47 0.42 42.39 3.68
1878 2157 7.660030 TCCCTCATTTTTCTGTCTTTTTCTT 57.340 32.000 0.00 0.00 0.00 2.52
1879 2158 7.660030 TTCCCTCATTTTTCTGTCTTTTTCT 57.340 32.000 0.00 0.00 0.00 2.52
1880 2159 9.411801 GTATTCCCTCATTTTTCTGTCTTTTTC 57.588 33.333 0.00 0.00 0.00 2.29
1881 2160 8.367911 GGTATTCCCTCATTTTTCTGTCTTTTT 58.632 33.333 0.00 0.00 0.00 1.94
1882 2161 7.508977 TGGTATTCCCTCATTTTTCTGTCTTTT 59.491 33.333 0.00 0.00 0.00 2.27
1883 2162 7.010160 TGGTATTCCCTCATTTTTCTGTCTTT 58.990 34.615 0.00 0.00 0.00 2.52
1884 2163 6.552008 TGGTATTCCCTCATTTTTCTGTCTT 58.448 36.000 0.00 0.00 0.00 3.01
1885 2164 6.139679 TGGTATTCCCTCATTTTTCTGTCT 57.860 37.500 0.00 0.00 0.00 3.41
1886 2165 6.834168 TTGGTATTCCCTCATTTTTCTGTC 57.166 37.500 0.00 0.00 0.00 3.51
1887 2166 6.782494 AGTTTGGTATTCCCTCATTTTTCTGT 59.218 34.615 0.00 0.00 0.00 3.41
1888 2167 7.232118 AGTTTGGTATTCCCTCATTTTTCTG 57.768 36.000 0.00 0.00 0.00 3.02
1908 2187 7.895759 AGTGCATTGAACAAACCATATAGTTT 58.104 30.769 0.00 0.00 40.57 2.66
1909 2188 7.466746 AGTGCATTGAACAAACCATATAGTT 57.533 32.000 0.00 0.00 0.00 2.24
1910 2189 6.183360 CGAGTGCATTGAACAAACCATATAGT 60.183 38.462 0.00 0.00 0.00 2.12
1911 2190 6.183360 ACGAGTGCATTGAACAAACCATATAG 60.183 38.462 0.00 0.00 0.00 1.31
1952 2364 0.837272 ATACATTGGGGAGGTCGGTG 59.163 55.000 0.00 0.00 0.00 4.94
1956 2368 2.224548 GCTGGTATACATTGGGGAGGTC 60.225 54.545 5.01 0.00 0.00 3.85
1965 2377 3.133691 CGCTCATGTGCTGGTATACATT 58.866 45.455 16.99 0.00 35.46 2.71
2031 2443 5.298026 TCCATATATCTAGTGAGAGATGCGC 59.702 44.000 0.00 0.00 34.48 6.09
2049 2461 9.693739 TGGTACATATCTGTTTGTTTTCCATAT 57.306 29.630 0.00 0.00 36.79 1.78
2050 2462 9.173021 CTGGTACATATCTGTTTGTTTTCCATA 57.827 33.333 0.00 0.00 38.20 2.74
2051 2463 7.669722 ACTGGTACATATCTGTTTGTTTTCCAT 59.330 33.333 0.00 0.00 38.20 3.41
2052 2464 7.001674 ACTGGTACATATCTGTTTGTTTTCCA 58.998 34.615 0.00 0.00 38.20 3.53
2053 2465 7.040686 ACACTGGTACATATCTGTTTGTTTTCC 60.041 37.037 0.00 0.00 38.20 3.13
2070 2482 5.499047 GGTTATACGTACGTACACTGGTAC 58.501 45.833 28.99 12.90 45.18 3.34
2071 2483 4.269123 CGGTTATACGTACGTACACTGGTA 59.731 45.833 28.99 17.54 33.01 3.25
2072 2484 3.063452 CGGTTATACGTACGTACACTGGT 59.937 47.826 28.99 15.22 33.01 4.00
2073 2485 3.063452 ACGGTTATACGTACGTACACTGG 59.937 47.826 32.09 25.26 46.58 4.00
2074 2486 4.258935 ACGGTTATACGTACGTACACTG 57.741 45.455 29.75 29.75 46.58 3.66
2168 2580 0.396435 TCCTGCCGAGCAAGAAGAAA 59.604 50.000 0.35 0.00 38.41 2.52
2220 2635 3.096495 TACTGCTCCCCCATGGCC 61.096 66.667 6.09 0.00 0.00 5.36
2648 3066 3.052909 TAGGACCCCGAGGACGAGG 62.053 68.421 0.00 0.00 43.03 4.63
2655 3088 2.124236 AGCGAGTAGGACCCCGAG 60.124 66.667 0.00 0.00 0.00 4.63
2682 3115 2.048127 GAGGCCACGGTCACAGTC 60.048 66.667 5.01 0.00 0.00 3.51
2683 3116 3.626924 GGAGGCCACGGTCACAGT 61.627 66.667 5.01 0.00 0.00 3.55
2718 3151 1.153429 GCCGTAACCCGAAGCAGAT 60.153 57.895 0.00 0.00 39.56 2.90
2882 3316 5.163612 ACAGCAACTCTTTTTCTTGAAGGAC 60.164 40.000 0.00 0.00 0.00 3.85
2901 3335 1.142870 AGCTTTCCCAGTGTTACAGCA 59.857 47.619 0.00 0.00 0.00 4.41
2902 3336 1.897560 AGCTTTCCCAGTGTTACAGC 58.102 50.000 0.00 0.00 0.00 4.40
2999 3433 4.367023 GTGCTGTGGCGTCCCGTA 62.367 66.667 0.00 0.00 42.25 4.02
3003 3437 0.673644 ATTACAGTGCTGTGGCGTCC 60.674 55.000 14.44 0.00 44.63 4.79
3004 3438 0.443869 CATTACAGTGCTGTGGCGTC 59.556 55.000 14.44 0.00 44.63 5.19
3007 3441 1.879380 TGAACATTACAGTGCTGTGGC 59.121 47.619 14.44 0.00 44.63 5.01
3196 3632 7.598493 GGCTTTTTCTTTATGCAACTGTGAATA 59.402 33.333 0.00 0.00 0.00 1.75
3210 3646 4.927422 CCAACGACTTGGCTTTTTCTTTA 58.073 39.130 0.00 0.00 40.79 1.85
3227 3663 3.437395 TCCATTTTACCATTCGACCAACG 59.563 43.478 0.00 0.00 44.09 4.10
3231 3667 5.379732 TTTGTCCATTTTACCATTCGACC 57.620 39.130 0.00 0.00 0.00 4.79
3232 3668 7.883229 ATTTTTGTCCATTTTACCATTCGAC 57.117 32.000 0.00 0.00 0.00 4.20
3251 4000 6.400568 CAAGCCATATGTGTCTCCAATTTTT 58.599 36.000 1.24 0.00 0.00 1.94
3346 4098 4.880759 AGATGAACATGAATCGGCTAGAG 58.119 43.478 0.00 0.00 0.00 2.43
3352 4104 8.375608 AGAGAAATAAGATGAACATGAATCGG 57.624 34.615 0.00 0.00 0.00 4.18
3533 4286 3.081409 GCCCCCGAAGTAGCTCCA 61.081 66.667 0.00 0.00 0.00 3.86
3585 4338 1.306642 TGAAGCTCTCCGAGTCCGAC 61.307 60.000 0.00 0.00 38.22 4.79
3586 4339 1.002502 TGAAGCTCTCCGAGTCCGA 60.003 57.895 0.00 0.00 38.22 4.55
3587 4340 1.137825 GTGAAGCTCTCCGAGTCCG 59.862 63.158 0.00 0.00 31.39 4.79
3588 4341 1.513622 GGTGAAGCTCTCCGAGTCC 59.486 63.158 0.00 0.00 31.39 3.85
3589 4342 1.251527 TGGGTGAAGCTCTCCGAGTC 61.252 60.000 0.00 0.00 31.07 3.36
3590 4343 0.832135 TTGGGTGAAGCTCTCCGAGT 60.832 55.000 0.00 0.00 31.07 4.18
3605 4358 5.022787 TCTTTCCCATCTATTGGTTTTGGG 58.977 41.667 0.00 0.00 46.99 4.12
3620 4373 4.382577 GGTTGCTTGAAACTTTCTTTCCCA 60.383 41.667 3.22 0.00 0.00 4.37
3643 4396 3.334691 TGGTCTGTTTTGCTAATCCTCG 58.665 45.455 0.00 0.00 0.00 4.63
3812 4567 4.228438 AGGGAGTAGCATTTTAGCTTCCTT 59.772 41.667 0.00 0.00 43.70 3.36
3830 4585 6.628398 GCTCTTATATTATGGGACGAAGGGAG 60.628 46.154 0.00 0.00 0.00 4.30
3831 4586 5.187186 GCTCTTATATTATGGGACGAAGGGA 59.813 44.000 0.00 0.00 0.00 4.20
3832 4587 5.420409 GCTCTTATATTATGGGACGAAGGG 58.580 45.833 0.00 0.00 0.00 3.95
3833 4588 5.103000 CGCTCTTATATTATGGGACGAAGG 58.897 45.833 0.00 0.00 0.00 3.46
3834 4589 5.710984 ACGCTCTTATATTATGGGACGAAG 58.289 41.667 0.00 0.00 0.00 3.79
3835 4590 5.717078 ACGCTCTTATATTATGGGACGAA 57.283 39.130 0.00 0.00 0.00 3.85
3836 4591 5.717078 AACGCTCTTATATTATGGGACGA 57.283 39.130 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.