Multiple sequence alignment - TraesCS1D01G271900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G271900 chr1D 100.000 2214 0 0 423 2636 366021079 366018866 0.000000e+00 4089.0
1 TraesCS1D01G271900 chr1D 100.000 234 0 0 1 234 366021501 366021268 1.450000e-117 433.0
2 TraesCS1D01G271900 chr1D 90.857 175 14 2 62 234 468719991 468720165 1.580000e-57 233.0
3 TraesCS1D01G271900 chr1D 89.080 174 17 2 62 233 370203194 370203021 5.710000e-52 215.0
4 TraesCS1D01G271900 chr1D 86.667 150 18 2 423 572 198085053 198085200 5.840000e-37 165.0
5 TraesCS1D01G271900 chr1A 88.972 1868 103 47 846 2636 465284087 465282246 0.000000e+00 2213.0
6 TraesCS1D01G271900 chr1A 85.816 705 62 17 841 1520 465302246 465301555 0.000000e+00 713.0
7 TraesCS1D01G271900 chr1A 89.352 216 23 0 423 638 465284598 465284383 3.340000e-69 272.0
8 TraesCS1D01G271900 chr1A 88.202 178 19 2 59 234 561495503 561495680 7.390000e-51 211.0
9 TraesCS1D01G271900 chr1A 77.246 334 54 15 2019 2341 465140247 465139925 2.700000e-40 176.0
10 TraesCS1D01G271900 chr1A 77.099 262 38 8 1264 1520 465301552 465301308 5.920000e-27 132.0
11 TraesCS1D01G271900 chr1A 100.000 32 0 0 1409 1440 465295222 465295191 2.830000e-05 60.2
12 TraesCS1D01G271900 chr1B 90.098 1737 91 22 956 2636 489995075 489993364 0.000000e+00 2180.0
13 TraesCS1D01G271900 chr1B 91.943 211 17 0 423 633 489999398 489999188 1.980000e-76 296.0
14 TraesCS1D01G271900 chr4A 92.308 182 14 0 423 604 678816133 678816314 2.600000e-65 259.0
15 TraesCS1D01G271900 chr5D 90.857 175 14 2 62 234 462041788 462041614 1.580000e-57 233.0
16 TraesCS1D01G271900 chr6A 91.228 171 13 2 65 234 578688797 578688628 5.670000e-57 231.0
17 TraesCS1D01G271900 chr6D 90.286 175 15 2 62 234 373050021 373049847 7.340000e-56 228.0
18 TraesCS1D01G271900 chr4B 88.764 178 18 2 59 234 242752075 242752252 1.590000e-52 217.0
19 TraesCS1D01G271900 chr4B 84.103 195 25 5 423 616 511155605 511155794 1.610000e-42 183.0
20 TraesCS1D01G271900 chr2D 90.798 163 13 2 62 222 514944598 514944436 1.590000e-52 217.0
21 TraesCS1D01G271900 chr3D 84.977 213 28 3 423 633 298459038 298458828 2.060000e-51 213.0
22 TraesCS1D01G271900 chr2B 88.571 175 18 2 62 234 606611224 606611050 7.390000e-51 211.0
23 TraesCS1D01G271900 chr6B 84.000 225 25 7 423 640 705333963 705333743 3.440000e-49 206.0
24 TraesCS1D01G271900 chr5A 83.178 214 31 3 423 635 438324435 438324644 9.630000e-45 191.0
25 TraesCS1D01G271900 chr2A 88.000 150 15 3 423 572 769476179 769476033 9.700000e-40 174.0
26 TraesCS1D01G271900 chr7A 100.000 28 0 0 2103 2130 254384943 254384970 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G271900 chr1D 366018866 366021501 2635 True 2261.0 4089 100.0000 1 2636 2 chr1D.!!$R2 2635
1 TraesCS1D01G271900 chr1A 465282246 465284598 2352 True 1242.5 2213 89.1620 423 2636 2 chr1A.!!$R3 2213
2 TraesCS1D01G271900 chr1A 465301308 465302246 938 True 422.5 713 81.4575 841 1520 2 chr1A.!!$R4 679
3 TraesCS1D01G271900 chr1B 489993364 489995075 1711 True 2180.0 2180 90.0980 956 2636 1 chr1B.!!$R1 1680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.033503 TGCCAGGGACGTAGATGAGA 60.034 55.0 0.0 0.0 0.0 3.27 F
226 227 0.108585 ACAACCAACTCCAGCACGAT 59.891 50.0 0.0 0.0 0.0 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1736 0.87940 CGGCAGCACAATTTTGGCAA 60.879 50.0 0.0 0.0 37.24 4.52 R
1871 2069 1.02139 GGCACGGACACTGATTCCAG 61.021 60.0 0.0 0.0 45.76 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.308899 AGAACACCTATGCTAAGCTACG 57.691 45.455 0.00 0.00 0.00 3.51
24 25 3.700038 AGAACACCTATGCTAAGCTACGT 59.300 43.478 0.00 0.00 0.00 3.57
25 26 4.885907 AGAACACCTATGCTAAGCTACGTA 59.114 41.667 0.00 0.00 0.00 3.57
26 27 5.535406 AGAACACCTATGCTAAGCTACGTAT 59.465 40.000 0.00 0.00 0.00 3.06
27 28 5.786264 ACACCTATGCTAAGCTACGTATT 57.214 39.130 0.00 0.00 0.00 1.89
28 29 6.158023 ACACCTATGCTAAGCTACGTATTT 57.842 37.500 0.00 0.00 0.00 1.40
29 30 6.579865 ACACCTATGCTAAGCTACGTATTTT 58.420 36.000 0.00 0.00 0.00 1.82
30 31 6.479001 ACACCTATGCTAAGCTACGTATTTTG 59.521 38.462 0.00 0.00 0.00 2.44
31 32 6.700081 CACCTATGCTAAGCTACGTATTTTGA 59.300 38.462 0.00 0.00 0.00 2.69
32 33 7.385205 CACCTATGCTAAGCTACGTATTTTGAT 59.615 37.037 0.00 0.00 0.00 2.57
33 34 7.931948 ACCTATGCTAAGCTACGTATTTTGATT 59.068 33.333 0.00 0.00 0.00 2.57
34 35 8.223769 CCTATGCTAAGCTACGTATTTTGATTG 58.776 37.037 0.00 0.00 0.00 2.67
35 36 6.978343 TGCTAAGCTACGTATTTTGATTGT 57.022 33.333 0.00 0.00 0.00 2.71
36 37 6.771076 TGCTAAGCTACGTATTTTGATTGTG 58.229 36.000 0.00 0.00 0.00 3.33
37 38 6.592220 TGCTAAGCTACGTATTTTGATTGTGA 59.408 34.615 0.00 0.00 0.00 3.58
38 39 7.118535 TGCTAAGCTACGTATTTTGATTGTGAA 59.881 33.333 0.00 0.00 0.00 3.18
39 40 7.636359 GCTAAGCTACGTATTTTGATTGTGAAG 59.364 37.037 0.00 0.00 0.00 3.02
40 41 7.667043 AAGCTACGTATTTTGATTGTGAAGA 57.333 32.000 0.00 0.00 0.00 2.87
41 42 7.849804 AGCTACGTATTTTGATTGTGAAGAT 57.150 32.000 0.00 0.00 0.00 2.40
42 43 8.268850 AGCTACGTATTTTGATTGTGAAGATT 57.731 30.769 0.00 0.00 0.00 2.40
43 44 8.730680 AGCTACGTATTTTGATTGTGAAGATTT 58.269 29.630 0.00 0.00 0.00 2.17
44 45 8.788813 GCTACGTATTTTGATTGTGAAGATTTG 58.211 33.333 0.00 0.00 0.00 2.32
45 46 7.566858 ACGTATTTTGATTGTGAAGATTTGC 57.433 32.000 0.00 0.00 0.00 3.68
46 47 6.305399 ACGTATTTTGATTGTGAAGATTTGCG 59.695 34.615 0.00 0.00 0.00 4.85
47 48 6.522855 CGTATTTTGATTGTGAAGATTTGCGA 59.477 34.615 0.00 0.00 0.00 5.10
48 49 7.218773 CGTATTTTGATTGTGAAGATTTGCGAT 59.781 33.333 0.00 0.00 0.00 4.58
49 50 7.894376 ATTTTGATTGTGAAGATTTGCGATT 57.106 28.000 0.00 0.00 0.00 3.34
50 51 6.932901 TTTGATTGTGAAGATTTGCGATTC 57.067 33.333 0.00 0.00 0.00 2.52
51 52 5.885230 TGATTGTGAAGATTTGCGATTCT 57.115 34.783 0.00 0.00 0.00 2.40
52 53 5.633927 TGATTGTGAAGATTTGCGATTCTG 58.366 37.500 0.00 0.00 0.00 3.02
53 54 5.412286 TGATTGTGAAGATTTGCGATTCTGA 59.588 36.000 0.00 0.00 0.00 3.27
54 55 4.668576 TGTGAAGATTTGCGATTCTGAC 57.331 40.909 0.00 1.45 0.00 3.51
55 56 4.064388 TGTGAAGATTTGCGATTCTGACA 58.936 39.130 0.00 3.72 0.00 3.58
56 57 4.514816 TGTGAAGATTTGCGATTCTGACAA 59.485 37.500 0.00 0.00 0.00 3.18
57 58 4.848299 GTGAAGATTTGCGATTCTGACAAC 59.152 41.667 0.00 0.00 0.00 3.32
58 59 4.514816 TGAAGATTTGCGATTCTGACAACA 59.485 37.500 0.00 0.00 0.00 3.33
59 60 5.181811 TGAAGATTTGCGATTCTGACAACAT 59.818 36.000 0.00 0.00 0.00 2.71
60 61 6.371271 TGAAGATTTGCGATTCTGACAACATA 59.629 34.615 0.00 0.00 0.00 2.29
61 62 6.932356 AGATTTGCGATTCTGACAACATAT 57.068 33.333 0.00 0.00 0.00 1.78
62 63 7.325660 AGATTTGCGATTCTGACAACATATT 57.674 32.000 0.00 0.00 0.00 1.28
63 64 8.437360 AGATTTGCGATTCTGACAACATATTA 57.563 30.769 0.00 0.00 0.00 0.98
64 65 8.892723 AGATTTGCGATTCTGACAACATATTAA 58.107 29.630 0.00 0.00 0.00 1.40
65 66 8.841444 ATTTGCGATTCTGACAACATATTAAC 57.159 30.769 0.00 0.00 0.00 2.01
66 67 6.976636 TGCGATTCTGACAACATATTAACA 57.023 33.333 0.00 0.00 0.00 2.41
67 68 7.371126 TGCGATTCTGACAACATATTAACAA 57.629 32.000 0.00 0.00 0.00 2.83
68 69 7.240674 TGCGATTCTGACAACATATTAACAAC 58.759 34.615 0.00 0.00 0.00 3.32
69 70 7.095017 TGCGATTCTGACAACATATTAACAACA 60.095 33.333 0.00 0.00 0.00 3.33
70 71 7.910162 GCGATTCTGACAACATATTAACAACAT 59.090 33.333 0.00 0.00 0.00 2.71
71 72 9.213819 CGATTCTGACAACATATTAACAACATG 57.786 33.333 0.00 0.00 0.00 3.21
75 76 9.447157 TCTGACAACATATTAACAACATGATCA 57.553 29.630 0.00 0.00 0.00 2.92
78 79 9.373750 GACAACATATTAACAACATGATCATCG 57.626 33.333 4.86 4.49 0.00 3.84
79 80 9.108284 ACAACATATTAACAACATGATCATCGA 57.892 29.630 4.86 0.00 0.00 3.59
80 81 9.590088 CAACATATTAACAACATGATCATCGAG 57.410 33.333 4.86 0.73 0.00 4.04
81 82 8.315391 ACATATTAACAACATGATCATCGAGG 57.685 34.615 4.86 0.00 0.00 4.63
82 83 8.150296 ACATATTAACAACATGATCATCGAGGA 58.850 33.333 4.86 0.65 0.00 3.71
83 84 9.159364 CATATTAACAACATGATCATCGAGGAT 57.841 33.333 13.19 13.19 0.00 3.24
84 85 6.849588 TTAACAACATGATCATCGAGGATG 57.150 37.500 18.60 7.49 41.00 3.51
92 93 2.988636 TCATCGAGGATGAGAGGGAT 57.011 50.000 0.00 0.00 43.11 3.85
93 94 3.251016 TCATCGAGGATGAGAGGGATT 57.749 47.619 0.00 0.00 43.11 3.01
94 95 3.581101 TCATCGAGGATGAGAGGGATTT 58.419 45.455 0.00 0.00 43.11 2.17
95 96 3.323115 TCATCGAGGATGAGAGGGATTTG 59.677 47.826 0.00 0.00 43.11 2.32
96 97 2.752030 TCGAGGATGAGAGGGATTTGT 58.248 47.619 0.00 0.00 0.00 2.83
97 98 3.910989 TCGAGGATGAGAGGGATTTGTA 58.089 45.455 0.00 0.00 0.00 2.41
98 99 3.891977 TCGAGGATGAGAGGGATTTGTAG 59.108 47.826 0.00 0.00 0.00 2.74
99 100 3.639094 CGAGGATGAGAGGGATTTGTAGT 59.361 47.826 0.00 0.00 0.00 2.73
100 101 4.100189 CGAGGATGAGAGGGATTTGTAGTT 59.900 45.833 0.00 0.00 0.00 2.24
101 102 5.363939 GAGGATGAGAGGGATTTGTAGTTG 58.636 45.833 0.00 0.00 0.00 3.16
102 103 5.032846 AGGATGAGAGGGATTTGTAGTTGA 58.967 41.667 0.00 0.00 0.00 3.18
103 104 5.130145 AGGATGAGAGGGATTTGTAGTTGAG 59.870 44.000 0.00 0.00 0.00 3.02
104 105 5.104735 GGATGAGAGGGATTTGTAGTTGAGT 60.105 44.000 0.00 0.00 0.00 3.41
105 106 6.098409 GGATGAGAGGGATTTGTAGTTGAGTA 59.902 42.308 0.00 0.00 0.00 2.59
106 107 6.282199 TGAGAGGGATTTGTAGTTGAGTAC 57.718 41.667 0.00 0.00 0.00 2.73
107 108 5.778241 TGAGAGGGATTTGTAGTTGAGTACA 59.222 40.000 0.00 0.00 0.00 2.90
108 109 6.269077 TGAGAGGGATTTGTAGTTGAGTACAA 59.731 38.462 7.21 7.21 40.40 2.41
123 124 7.433708 TTGAGTACAACTATGACAATGTTGG 57.566 36.000 20.51 8.93 43.54 3.77
124 125 6.530120 TGAGTACAACTATGACAATGTTGGT 58.470 36.000 20.51 12.50 43.54 3.67
125 126 7.672240 TGAGTACAACTATGACAATGTTGGTA 58.328 34.615 20.51 11.85 43.54 3.25
126 127 7.817478 TGAGTACAACTATGACAATGTTGGTAG 59.183 37.037 20.51 3.14 43.54 3.18
127 128 5.880054 ACAACTATGACAATGTTGGTAGC 57.120 39.130 20.51 0.00 43.54 3.58
128 129 4.700213 ACAACTATGACAATGTTGGTAGCC 59.300 41.667 20.51 0.00 43.54 3.93
129 130 3.531538 ACTATGACAATGTTGGTAGCCG 58.468 45.455 0.00 0.00 0.00 5.52
130 131 2.489938 ATGACAATGTTGGTAGCCGT 57.510 45.000 0.00 0.00 0.00 5.68
131 132 1.518325 TGACAATGTTGGTAGCCGTG 58.482 50.000 0.00 0.00 0.00 4.94
132 133 1.202710 TGACAATGTTGGTAGCCGTGT 60.203 47.619 0.00 0.00 0.00 4.49
133 134 1.196808 GACAATGTTGGTAGCCGTGTG 59.803 52.381 0.00 0.00 0.00 3.82
134 135 1.202710 ACAATGTTGGTAGCCGTGTGA 60.203 47.619 0.00 0.00 0.00 3.58
135 136 1.876799 CAATGTTGGTAGCCGTGTGAA 59.123 47.619 0.00 0.00 0.00 3.18
136 137 1.808411 ATGTTGGTAGCCGTGTGAAG 58.192 50.000 0.00 0.00 0.00 3.02
137 138 0.882927 TGTTGGTAGCCGTGTGAAGC 60.883 55.000 0.00 0.00 0.00 3.86
138 139 1.302192 TTGGTAGCCGTGTGAAGCC 60.302 57.895 0.00 0.00 0.00 4.35
139 140 1.764571 TTGGTAGCCGTGTGAAGCCT 61.765 55.000 0.00 0.00 0.00 4.58
140 141 1.741770 GGTAGCCGTGTGAAGCCTG 60.742 63.158 0.00 0.00 0.00 4.85
141 142 2.047274 TAGCCGTGTGAAGCCTGC 60.047 61.111 0.00 0.00 0.00 4.85
142 143 3.605749 TAGCCGTGTGAAGCCTGCC 62.606 63.158 0.00 0.00 0.00 4.85
144 145 3.052082 CCGTGTGAAGCCTGCCAG 61.052 66.667 0.00 0.00 0.00 4.85
145 146 3.052082 CGTGTGAAGCCTGCCAGG 61.052 66.667 6.32 6.32 38.80 4.45
146 147 2.674380 GTGTGAAGCCTGCCAGGG 60.674 66.667 13.78 0.00 35.37 4.45
147 148 2.853542 TGTGAAGCCTGCCAGGGA 60.854 61.111 13.78 0.00 35.37 4.20
148 149 2.360475 GTGAAGCCTGCCAGGGAC 60.360 66.667 13.78 0.00 35.37 4.46
149 150 4.020617 TGAAGCCTGCCAGGGACG 62.021 66.667 13.78 0.00 35.37 4.79
150 151 4.021925 GAAGCCTGCCAGGGACGT 62.022 66.667 13.78 0.00 35.37 4.34
151 152 2.606519 AAGCCTGCCAGGGACGTA 60.607 61.111 13.78 0.00 35.37 3.57
152 153 2.579684 GAAGCCTGCCAGGGACGTAG 62.580 65.000 13.78 0.00 35.37 3.51
153 154 3.075005 GCCTGCCAGGGACGTAGA 61.075 66.667 13.78 0.00 35.37 2.59
154 155 2.435693 GCCTGCCAGGGACGTAGAT 61.436 63.158 13.78 0.00 35.37 1.98
155 156 1.443407 CCTGCCAGGGACGTAGATG 59.557 63.158 1.63 0.00 0.00 2.90
156 157 1.043116 CCTGCCAGGGACGTAGATGA 61.043 60.000 1.63 0.00 0.00 2.92
157 158 0.387202 CTGCCAGGGACGTAGATGAG 59.613 60.000 0.00 0.00 0.00 2.90
158 159 0.033503 TGCCAGGGACGTAGATGAGA 60.034 55.000 0.00 0.00 0.00 3.27
159 160 1.333177 GCCAGGGACGTAGATGAGAT 58.667 55.000 0.00 0.00 0.00 2.75
160 161 1.271102 GCCAGGGACGTAGATGAGATC 59.729 57.143 0.00 0.00 0.00 2.75
161 162 2.587522 CCAGGGACGTAGATGAGATCA 58.412 52.381 0.00 0.00 0.00 2.92
162 163 2.294791 CCAGGGACGTAGATGAGATCAC 59.705 54.545 0.00 0.00 0.00 3.06
163 164 2.294791 CAGGGACGTAGATGAGATCACC 59.705 54.545 0.00 0.00 0.00 4.02
164 165 1.267261 GGGACGTAGATGAGATCACCG 59.733 57.143 0.00 0.00 0.00 4.94
165 166 1.335142 GGACGTAGATGAGATCACCGC 60.335 57.143 0.00 0.00 0.00 5.68
166 167 1.333931 GACGTAGATGAGATCACCGCA 59.666 52.381 0.00 0.00 0.00 5.69
167 168 1.957177 ACGTAGATGAGATCACCGCAT 59.043 47.619 0.00 0.00 38.02 4.73
168 169 2.362397 ACGTAGATGAGATCACCGCATT 59.638 45.455 0.00 0.00 35.38 3.56
169 170 3.181475 ACGTAGATGAGATCACCGCATTT 60.181 43.478 0.00 0.00 35.38 2.32
170 171 3.426859 CGTAGATGAGATCACCGCATTTC 59.573 47.826 0.00 0.00 35.38 2.17
171 172 3.834489 AGATGAGATCACCGCATTTCT 57.166 42.857 0.00 0.00 35.38 2.52
172 173 4.148128 AGATGAGATCACCGCATTTCTT 57.852 40.909 0.00 0.00 35.38 2.52
173 174 3.875727 AGATGAGATCACCGCATTTCTTG 59.124 43.478 0.00 0.00 35.38 3.02
174 175 3.333029 TGAGATCACCGCATTTCTTGA 57.667 42.857 0.00 0.00 0.00 3.02
175 176 3.264947 TGAGATCACCGCATTTCTTGAG 58.735 45.455 0.00 0.00 0.00 3.02
176 177 3.055891 TGAGATCACCGCATTTCTTGAGA 60.056 43.478 0.00 0.00 0.00 3.27
177 178 3.265791 AGATCACCGCATTTCTTGAGAC 58.734 45.455 0.00 0.00 0.00 3.36
178 179 1.808411 TCACCGCATTTCTTGAGACC 58.192 50.000 0.00 0.00 0.00 3.85
179 180 1.347707 TCACCGCATTTCTTGAGACCT 59.652 47.619 0.00 0.00 0.00 3.85
180 181 2.154462 CACCGCATTTCTTGAGACCTT 58.846 47.619 0.00 0.00 0.00 3.50
181 182 2.160417 CACCGCATTTCTTGAGACCTTC 59.840 50.000 0.00 0.00 0.00 3.46
182 183 1.740025 CCGCATTTCTTGAGACCTTCC 59.260 52.381 0.00 0.00 0.00 3.46
183 184 1.394917 CGCATTTCTTGAGACCTTCCG 59.605 52.381 0.00 0.00 0.00 4.30
184 185 1.740025 GCATTTCTTGAGACCTTCCGG 59.260 52.381 0.00 0.00 0.00 5.14
185 186 2.615493 GCATTTCTTGAGACCTTCCGGA 60.615 50.000 0.00 0.00 0.00 5.14
186 187 3.674997 CATTTCTTGAGACCTTCCGGAA 58.325 45.455 17.73 17.73 0.00 4.30
187 188 3.402628 TTTCTTGAGACCTTCCGGAAG 57.597 47.619 33.29 33.29 38.14 3.46
188 189 2.304221 TCTTGAGACCTTCCGGAAGA 57.696 50.000 39.78 20.70 40.79 2.87
189 190 2.821437 TCTTGAGACCTTCCGGAAGAT 58.179 47.619 39.78 28.97 40.79 2.40
190 191 2.761208 TCTTGAGACCTTCCGGAAGATC 59.239 50.000 39.78 34.47 40.79 2.75
191 192 1.103803 TGAGACCTTCCGGAAGATCG 58.896 55.000 39.78 26.94 36.07 3.69
192 193 1.340697 TGAGACCTTCCGGAAGATCGA 60.341 52.381 39.78 24.21 36.07 3.59
193 194 1.335496 GAGACCTTCCGGAAGATCGAG 59.665 57.143 39.78 26.27 36.07 4.04
194 195 1.064611 AGACCTTCCGGAAGATCGAGA 60.065 52.381 39.78 6.92 36.07 4.04
195 196 1.749634 GACCTTCCGGAAGATCGAGAA 59.250 52.381 39.78 6.12 40.79 2.87
196 197 1.477295 ACCTTCCGGAAGATCGAGAAC 59.523 52.381 39.78 0.00 40.79 3.01
197 198 1.751924 CCTTCCGGAAGATCGAGAACT 59.248 52.381 39.78 0.00 40.79 3.01
198 199 2.480416 CCTTCCGGAAGATCGAGAACTG 60.480 54.545 39.78 18.52 40.79 3.16
199 200 1.835494 TCCGGAAGATCGAGAACTGT 58.165 50.000 0.00 0.00 0.00 3.55
200 201 1.472878 TCCGGAAGATCGAGAACTGTG 59.527 52.381 0.00 0.00 0.00 3.66
201 202 1.472878 CCGGAAGATCGAGAACTGTGA 59.527 52.381 0.00 0.00 0.00 3.58
202 203 2.099921 CCGGAAGATCGAGAACTGTGAT 59.900 50.000 0.00 0.00 0.00 3.06
203 204 3.429547 CCGGAAGATCGAGAACTGTGATT 60.430 47.826 0.00 0.00 0.00 2.57
204 205 3.794028 CGGAAGATCGAGAACTGTGATTC 59.206 47.826 0.00 0.00 0.00 2.52
205 206 4.675408 CGGAAGATCGAGAACTGTGATTCA 60.675 45.833 0.00 0.00 0.00 2.57
206 207 4.564769 GGAAGATCGAGAACTGTGATTCAC 59.435 45.833 9.93 9.93 34.56 3.18
207 208 4.790765 AGATCGAGAACTGTGATTCACA 57.209 40.909 18.08 18.08 42.45 3.58
219 220 3.289407 TGATTCACACAACCAACTCCA 57.711 42.857 0.00 0.00 0.00 3.86
220 221 3.213506 TGATTCACACAACCAACTCCAG 58.786 45.455 0.00 0.00 0.00 3.86
221 222 1.388547 TTCACACAACCAACTCCAGC 58.611 50.000 0.00 0.00 0.00 4.85
222 223 0.254462 TCACACAACCAACTCCAGCA 59.746 50.000 0.00 0.00 0.00 4.41
223 224 0.381801 CACACAACCAACTCCAGCAC 59.618 55.000 0.00 0.00 0.00 4.40
224 225 1.095228 ACACAACCAACTCCAGCACG 61.095 55.000 0.00 0.00 0.00 5.34
225 226 0.813610 CACAACCAACTCCAGCACGA 60.814 55.000 0.00 0.00 0.00 4.35
226 227 0.108585 ACAACCAACTCCAGCACGAT 59.891 50.000 0.00 0.00 0.00 3.73
227 228 0.798776 CAACCAACTCCAGCACGATC 59.201 55.000 0.00 0.00 0.00 3.69
228 229 0.687354 AACCAACTCCAGCACGATCT 59.313 50.000 0.00 0.00 0.00 2.75
229 230 0.687354 ACCAACTCCAGCACGATCTT 59.313 50.000 0.00 0.00 0.00 2.40
230 231 1.899814 ACCAACTCCAGCACGATCTTA 59.100 47.619 0.00 0.00 0.00 2.10
231 232 2.501723 ACCAACTCCAGCACGATCTTAT 59.498 45.455 0.00 0.00 0.00 1.73
232 233 3.055094 ACCAACTCCAGCACGATCTTATT 60.055 43.478 0.00 0.00 0.00 1.40
233 234 3.310774 CCAACTCCAGCACGATCTTATTG 59.689 47.826 0.00 0.00 0.00 1.90
508 509 5.143660 TGTTGTATCGTGAATTGCTTTTCG 58.856 37.500 0.00 0.00 0.00 3.46
510 511 2.919666 ATCGTGAATTGCTTTTCGGG 57.080 45.000 0.00 0.00 0.00 5.14
516 517 2.038295 TGAATTGCTTTTCGGGCCATTT 59.962 40.909 4.39 0.00 0.00 2.32
524 525 7.296628 TGCTTTTCGGGCCATTTATATATTT 57.703 32.000 4.39 0.00 0.00 1.40
570 571 9.964303 CGATTCCATTTGGTTCATATTATTGAA 57.036 29.630 0.00 0.00 36.34 2.69
609 610 5.619607 CGATGCTATGTAAAATTTACGGTGC 59.380 40.000 10.81 13.17 0.00 5.01
612 613 2.615489 TGTAAAATTTACGGTGCCGC 57.385 45.000 10.87 0.00 44.19 6.53
613 614 1.136029 TGTAAAATTTACGGTGCCGCG 60.136 47.619 10.87 0.00 44.19 6.46
616 617 0.952010 AAATTTACGGTGCCGCGAGT 60.952 50.000 8.23 1.77 44.19 4.18
618 619 2.775032 ATTTACGGTGCCGCGAGTGT 62.775 55.000 8.23 0.68 44.19 3.55
620 621 2.974935 TTACGGTGCCGCGAGTGTTT 62.975 55.000 8.23 0.00 44.19 2.83
635 636 1.011968 TGTTTCGGCGGAACAGATCG 61.012 55.000 28.74 0.00 0.00 3.69
646 708 2.223377 GGAACAGATCGCGAAGTTTTGT 59.777 45.455 15.24 5.62 0.00 2.83
648 710 1.455786 ACAGATCGCGAAGTTTTGTCG 59.544 47.619 15.24 3.58 41.46 4.35
651 713 2.222953 ATCGCGAAGTTTTGTCGGCG 62.223 55.000 15.24 0.00 38.93 6.46
657 719 0.535553 AAGTTTTGTCGGCGCCCTTA 60.536 50.000 23.46 3.24 0.00 2.69
660 722 1.068125 GTTTTGTCGGCGCCCTTAAAT 60.068 47.619 23.46 0.00 0.00 1.40
688 775 1.669211 GCGGGACCTATCTAATGCGAC 60.669 57.143 0.00 0.00 0.00 5.19
704 791 1.136057 GCGACCGGTTTTGAAGATGAC 60.136 52.381 9.42 0.00 0.00 3.06
705 792 1.463444 CGACCGGTTTTGAAGATGACC 59.537 52.381 9.42 0.00 0.00 4.02
720 820 5.622770 AGATGACCGTTACAAATCAAACC 57.377 39.130 0.00 0.00 0.00 3.27
722 822 3.464907 TGACCGTTACAAATCAAACCGA 58.535 40.909 0.00 0.00 0.00 4.69
730 830 6.460452 CGTTACAAATCAAACCGATTAGTTCG 59.540 38.462 0.00 0.00 43.83 3.95
747 847 2.616842 GTTCGGTGTTGAAATGTGGACT 59.383 45.455 0.00 0.00 0.00 3.85
748 848 2.925724 TCGGTGTTGAAATGTGGACTT 58.074 42.857 0.00 0.00 0.00 3.01
749 849 3.283751 TCGGTGTTGAAATGTGGACTTT 58.716 40.909 0.00 0.00 0.00 2.66
750 850 3.314080 TCGGTGTTGAAATGTGGACTTTC 59.686 43.478 0.00 0.00 34.02 2.62
775 875 7.751047 CACTCTTGGATGCAAATGAATAAAG 57.249 36.000 0.00 0.00 0.00 1.85
776 876 7.318141 CACTCTTGGATGCAAATGAATAAAGT 58.682 34.615 0.00 0.00 0.00 2.66
777 877 8.461222 CACTCTTGGATGCAAATGAATAAAGTA 58.539 33.333 0.00 0.00 0.00 2.24
778 878 9.193806 ACTCTTGGATGCAAATGAATAAAGTAT 57.806 29.630 0.00 0.00 0.00 2.12
779 879 9.674824 CTCTTGGATGCAAATGAATAAAGTATC 57.325 33.333 0.00 0.00 0.00 2.24
780 880 9.412460 TCTTGGATGCAAATGAATAAAGTATCT 57.588 29.630 0.00 0.00 0.00 1.98
783 883 9.288576 TGGATGCAAATGAATAAAGTATCTAGG 57.711 33.333 0.00 0.00 0.00 3.02
784 884 8.239998 GGATGCAAATGAATAAAGTATCTAGGC 58.760 37.037 0.00 0.00 0.00 3.93
785 885 7.510549 TGCAAATGAATAAAGTATCTAGGCC 57.489 36.000 0.00 0.00 0.00 5.19
786 886 7.290061 TGCAAATGAATAAAGTATCTAGGCCT 58.710 34.615 11.78 11.78 0.00 5.19
787 887 7.445402 TGCAAATGAATAAAGTATCTAGGCCTC 59.555 37.037 9.68 0.00 0.00 4.70
795 895 6.502074 AAAGTATCTAGGCCTCTTTAAGGG 57.498 41.667 9.68 0.00 46.32 3.95
807 907 1.000843 CTTTAAGGGTTGCTGTTGCCC 59.999 52.381 0.00 0.00 42.64 5.36
810 910 1.685355 AAGGGTTGCTGTTGCCCAAC 61.685 55.000 4.26 4.26 44.69 3.77
835 942 2.397044 AAAAAGTCCATGGGAAGGCA 57.603 45.000 13.02 0.00 31.38 4.75
836 943 1.632589 AAAAGTCCATGGGAAGGCAC 58.367 50.000 13.02 0.78 31.38 5.01
857 971 3.519510 ACTTAGTTGCTCAGCCCATCTAA 59.480 43.478 0.00 0.00 0.00 2.10
935 1052 3.004839 CGATATTCCGAGCTCTCCAGAAA 59.995 47.826 12.85 0.00 0.00 2.52
954 1071 0.549169 ATCTCTTCCCGTTTCCCCCA 60.549 55.000 0.00 0.00 0.00 4.96
960 1077 2.001269 CCCGTTTCCCCCATCCTCT 61.001 63.158 0.00 0.00 0.00 3.69
962 1079 0.468648 CCGTTTCCCCCATCCTCTAC 59.531 60.000 0.00 0.00 0.00 2.59
971 1088 2.359900 CCCATCCTCTACAAGCACAAC 58.640 52.381 0.00 0.00 0.00 3.32
985 1102 1.004927 GCACAACGAAGCGATCCATAC 60.005 52.381 0.00 0.00 0.00 2.39
1020 1137 2.034558 CGAGCCATCAAACCAACACTTT 59.965 45.455 0.00 0.00 0.00 2.66
1036 1168 5.068234 ACACTTTATCAGATCGAACGGAA 57.932 39.130 0.00 0.00 0.00 4.30
1052 1184 1.446272 GAACCGAGAACCGAGGCAG 60.446 63.158 0.00 0.00 41.76 4.85
1054 1186 4.069232 CCGAGAACCGAGGCAGCA 62.069 66.667 0.00 0.00 41.76 4.41
1071 1203 2.105128 AAGGGATCGCGCGAGAAG 59.895 61.111 36.99 5.65 0.00 2.85
1472 1636 1.515020 CGCCCAGAGAGGAACAGAG 59.485 63.158 0.00 0.00 41.22 3.35
1473 1637 1.254284 CGCCCAGAGAGGAACAGAGT 61.254 60.000 0.00 0.00 41.22 3.24
1474 1638 0.980423 GCCCAGAGAGGAACAGAGTT 59.020 55.000 0.00 0.00 41.22 3.01
1475 1639 2.180276 GCCCAGAGAGGAACAGAGTTA 58.820 52.381 0.00 0.00 41.22 2.24
1476 1640 2.093921 GCCCAGAGAGGAACAGAGTTAC 60.094 54.545 0.00 0.00 41.22 2.50
1477 1641 3.165875 CCCAGAGAGGAACAGAGTTACA 58.834 50.000 0.00 0.00 41.22 2.41
1478 1642 3.194542 CCCAGAGAGGAACAGAGTTACAG 59.805 52.174 0.00 0.00 41.22 2.74
1479 1643 4.082845 CCAGAGAGGAACAGAGTTACAGA 58.917 47.826 0.00 0.00 41.22 3.41
1487 1651 4.499183 GAACAGAGTTACAGAGGTGATGG 58.501 47.826 0.00 0.00 0.00 3.51
1489 1653 3.259374 ACAGAGTTACAGAGGTGATGGTG 59.741 47.826 0.00 0.00 0.00 4.17
1500 1670 1.408702 GGTGATGGTGCTCTCTCTCTC 59.591 57.143 0.00 0.00 0.00 3.20
1550 1721 4.535526 TTGTGCAGCAGAGTTATCAGTA 57.464 40.909 0.00 0.00 0.00 2.74
1558 1729 6.348868 GCAGCAGAGTTATCAGTAAGCTTTTT 60.349 38.462 3.20 0.00 0.00 1.94
1590 1761 2.731587 AAATTGTGCTGCCGTGCGTC 62.732 55.000 0.00 0.00 35.36 5.19
1662 1833 0.583438 CATCATCGGCGAATCACACC 59.417 55.000 15.93 0.00 0.00 4.16
1683 1854 4.402155 ACCACACAAAATCTCAAAGCTCAA 59.598 37.500 0.00 0.00 0.00 3.02
1684 1855 5.105392 ACCACACAAAATCTCAAAGCTCAAA 60.105 36.000 0.00 0.00 0.00 2.69
1694 1865 5.284079 TCTCAAAGCTCAAATTTGCACTTC 58.716 37.500 19.45 6.48 37.52 3.01
1742 1913 2.187163 GGGAACAGCCTACGAGCC 59.813 66.667 0.00 0.00 36.66 4.70
1880 2078 3.207669 GCAGCGGGCTGGAATCAG 61.208 66.667 21.10 0.00 43.77 2.90
1881 2079 2.270205 CAGCGGGCTGGAATCAGT 59.730 61.111 12.78 0.00 42.78 3.41
1882 2080 2.110967 CAGCGGGCTGGAATCAGTG 61.111 63.158 12.78 0.00 42.78 3.66
1883 2081 2.045926 GCGGGCTGGAATCAGTGT 60.046 61.111 0.00 0.00 42.78 3.55
1884 2082 2.109126 GCGGGCTGGAATCAGTGTC 61.109 63.158 0.00 0.00 42.78 3.67
1885 2083 1.450312 CGGGCTGGAATCAGTGTCC 60.450 63.158 0.00 0.00 42.78 4.02
2027 2228 1.663379 CGTACATCGGAGCAGGGTGA 61.663 60.000 0.00 0.00 35.71 4.02
2341 2673 3.001634 GGACACACACAGCATATTCATCG 59.998 47.826 0.00 0.00 0.00 3.84
2342 2674 2.938451 ACACACACAGCATATTCATCGG 59.062 45.455 0.00 0.00 0.00 4.18
2346 2693 2.159099 ACACAGCATATTCATCGGTCGT 60.159 45.455 0.00 0.00 0.00 4.34
2371 2718 1.067416 CGCCTGGATCGAATCGGAA 59.933 57.895 1.76 0.00 0.00 4.30
2372 2719 0.941463 CGCCTGGATCGAATCGGAAG 60.941 60.000 1.76 0.00 0.00 3.46
2374 2721 1.040646 CCTGGATCGAATCGGAAGGA 58.959 55.000 1.76 0.00 30.75 3.36
2375 2722 1.412710 CCTGGATCGAATCGGAAGGAA 59.587 52.381 1.76 0.00 30.75 3.36
2376 2723 2.546795 CCTGGATCGAATCGGAAGGAAG 60.547 54.545 1.76 0.00 30.75 3.46
2377 2724 1.202533 TGGATCGAATCGGAAGGAAGC 60.203 52.381 1.76 0.00 0.00 3.86
2378 2725 1.069358 GGATCGAATCGGAAGGAAGCT 59.931 52.381 1.76 0.00 0.00 3.74
2570 2923 2.633509 GGGTACACGCACTCGGTCT 61.634 63.158 0.00 0.00 40.69 3.85
2577 2930 2.022129 CGCACTCGGTCTTGGACAC 61.022 63.158 0.14 0.00 33.68 3.67
2579 2932 1.004918 CACTCGGTCTTGGACACCC 60.005 63.158 0.14 0.00 33.68 4.61
2580 2933 2.214920 ACTCGGTCTTGGACACCCC 61.215 63.158 0.14 0.00 33.68 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.008811 ACGTAGCTTAGCATAGGTGTTCTAG 59.991 44.000 7.07 0.00 0.00 2.43
2 3 3.700038 ACGTAGCTTAGCATAGGTGTTCT 59.300 43.478 7.07 0.00 0.00 3.01
3 4 4.043037 ACGTAGCTTAGCATAGGTGTTC 57.957 45.455 7.07 0.00 0.00 3.18
4 5 5.786264 ATACGTAGCTTAGCATAGGTGTT 57.214 39.130 7.07 0.00 0.00 3.32
5 6 5.786264 AATACGTAGCTTAGCATAGGTGT 57.214 39.130 7.07 3.91 0.00 4.16
6 7 6.700081 TCAAAATACGTAGCTTAGCATAGGTG 59.300 38.462 7.07 0.00 0.00 4.00
7 8 6.812998 TCAAAATACGTAGCTTAGCATAGGT 58.187 36.000 7.07 9.95 0.00 3.08
8 9 7.891183 ATCAAAATACGTAGCTTAGCATAGG 57.109 36.000 7.07 4.65 0.00 2.57
9 10 8.765219 ACAATCAAAATACGTAGCTTAGCATAG 58.235 33.333 7.07 0.00 0.00 2.23
10 11 8.547894 CACAATCAAAATACGTAGCTTAGCATA 58.452 33.333 7.07 0.00 0.00 3.14
11 12 7.279981 TCACAATCAAAATACGTAGCTTAGCAT 59.720 33.333 7.07 0.00 0.00 3.79
12 13 6.592220 TCACAATCAAAATACGTAGCTTAGCA 59.408 34.615 7.07 0.00 0.00 3.49
13 14 7.000575 TCACAATCAAAATACGTAGCTTAGC 57.999 36.000 0.08 0.00 0.00 3.09
14 15 8.869897 TCTTCACAATCAAAATACGTAGCTTAG 58.130 33.333 0.08 0.00 0.00 2.18
15 16 8.766000 TCTTCACAATCAAAATACGTAGCTTA 57.234 30.769 0.08 0.00 0.00 3.09
16 17 7.667043 TCTTCACAATCAAAATACGTAGCTT 57.333 32.000 0.08 0.00 0.00 3.74
17 18 7.849804 ATCTTCACAATCAAAATACGTAGCT 57.150 32.000 0.08 0.00 0.00 3.32
18 19 8.788813 CAAATCTTCACAATCAAAATACGTAGC 58.211 33.333 0.08 0.00 0.00 3.58
19 20 8.788813 GCAAATCTTCACAATCAAAATACGTAG 58.211 33.333 0.08 0.00 0.00 3.51
20 21 7.480229 CGCAAATCTTCACAATCAAAATACGTA 59.520 33.333 0.00 0.00 0.00 3.57
21 22 6.305399 CGCAAATCTTCACAATCAAAATACGT 59.695 34.615 0.00 0.00 0.00 3.57
22 23 6.522855 TCGCAAATCTTCACAATCAAAATACG 59.477 34.615 0.00 0.00 0.00 3.06
23 24 7.795431 TCGCAAATCTTCACAATCAAAATAC 57.205 32.000 0.00 0.00 0.00 1.89
24 25 8.984891 AATCGCAAATCTTCACAATCAAAATA 57.015 26.923 0.00 0.00 0.00 1.40
25 26 7.816031 AGAATCGCAAATCTTCACAATCAAAAT 59.184 29.630 0.00 0.00 0.00 1.82
26 27 7.115236 CAGAATCGCAAATCTTCACAATCAAAA 59.885 33.333 0.00 0.00 0.00 2.44
27 28 6.583427 CAGAATCGCAAATCTTCACAATCAAA 59.417 34.615 0.00 0.00 0.00 2.69
28 29 6.072563 TCAGAATCGCAAATCTTCACAATCAA 60.073 34.615 0.00 0.00 0.00 2.57
29 30 5.412286 TCAGAATCGCAAATCTTCACAATCA 59.588 36.000 0.00 0.00 0.00 2.57
30 31 5.736358 GTCAGAATCGCAAATCTTCACAATC 59.264 40.000 0.00 0.00 0.00 2.67
31 32 5.181811 TGTCAGAATCGCAAATCTTCACAAT 59.818 36.000 0.00 0.00 0.00 2.71
32 33 4.514816 TGTCAGAATCGCAAATCTTCACAA 59.485 37.500 0.00 0.00 0.00 3.33
33 34 4.064388 TGTCAGAATCGCAAATCTTCACA 58.936 39.130 0.00 0.00 0.00 3.58
34 35 4.668576 TGTCAGAATCGCAAATCTTCAC 57.331 40.909 0.00 0.00 0.00 3.18
35 36 4.514816 TGTTGTCAGAATCGCAAATCTTCA 59.485 37.500 0.00 0.00 0.00 3.02
36 37 5.034554 TGTTGTCAGAATCGCAAATCTTC 57.965 39.130 0.00 0.00 0.00 2.87
37 38 5.633830 ATGTTGTCAGAATCGCAAATCTT 57.366 34.783 0.00 0.00 0.00 2.40
38 39 6.932356 ATATGTTGTCAGAATCGCAAATCT 57.068 33.333 0.00 0.00 0.00 2.40
39 40 8.947940 GTTAATATGTTGTCAGAATCGCAAATC 58.052 33.333 0.00 0.00 0.00 2.17
40 41 8.458052 TGTTAATATGTTGTCAGAATCGCAAAT 58.542 29.630 0.00 0.00 0.00 2.32
41 42 7.811653 TGTTAATATGTTGTCAGAATCGCAAA 58.188 30.769 0.00 0.00 0.00 3.68
42 43 7.371126 TGTTAATATGTTGTCAGAATCGCAA 57.629 32.000 0.00 0.00 0.00 4.85
43 44 6.976636 TGTTAATATGTTGTCAGAATCGCA 57.023 33.333 0.00 0.00 0.00 5.10
44 45 7.240674 TGTTGTTAATATGTTGTCAGAATCGC 58.759 34.615 0.00 0.00 0.00 4.58
45 46 9.213819 CATGTTGTTAATATGTTGTCAGAATCG 57.786 33.333 0.00 0.00 0.00 3.34
49 50 9.447157 TGATCATGTTGTTAATATGTTGTCAGA 57.553 29.630 0.00 0.00 32.51 3.27
52 53 9.373750 CGATGATCATGTTGTTAATATGTTGTC 57.626 33.333 14.30 0.00 32.51 3.18
53 54 9.108284 TCGATGATCATGTTGTTAATATGTTGT 57.892 29.630 14.30 0.00 32.51 3.32
54 55 9.590088 CTCGATGATCATGTTGTTAATATGTTG 57.410 33.333 14.30 0.00 32.51 3.33
55 56 8.777413 CCTCGATGATCATGTTGTTAATATGTT 58.223 33.333 14.30 0.00 32.51 2.71
56 57 8.150296 TCCTCGATGATCATGTTGTTAATATGT 58.850 33.333 14.30 0.00 32.51 2.29
57 58 8.538409 TCCTCGATGATCATGTTGTTAATATG 57.462 34.615 14.30 0.00 0.00 1.78
58 59 9.159364 CATCCTCGATGATCATGTTGTTAATAT 57.841 33.333 14.30 0.00 42.09 1.28
59 60 8.367156 TCATCCTCGATGATCATGTTGTTAATA 58.633 33.333 14.30 0.00 43.11 0.98
60 61 7.219322 TCATCCTCGATGATCATGTTGTTAAT 58.781 34.615 14.30 0.00 43.11 1.40
61 62 6.581712 TCATCCTCGATGATCATGTTGTTAA 58.418 36.000 14.30 0.00 43.11 2.01
62 63 6.040842 TCTCATCCTCGATGATCATGTTGTTA 59.959 38.462 14.30 0.00 46.16 2.41
63 64 5.027293 TCATCCTCGATGATCATGTTGTT 57.973 39.130 14.30 0.00 43.11 2.83
64 65 4.343239 TCTCATCCTCGATGATCATGTTGT 59.657 41.667 14.30 0.00 46.16 3.32
65 66 4.879598 TCTCATCCTCGATGATCATGTTG 58.120 43.478 14.30 4.38 46.16 3.33
66 67 4.021280 CCTCTCATCCTCGATGATCATGTT 60.021 45.833 14.30 0.00 46.16 2.71
67 68 3.510753 CCTCTCATCCTCGATGATCATGT 59.489 47.826 14.30 0.00 46.16 3.21
68 69 3.119065 CCCTCTCATCCTCGATGATCATG 60.119 52.174 14.30 5.89 46.16 3.07
69 70 3.098377 CCCTCTCATCCTCGATGATCAT 58.902 50.000 8.25 8.25 46.16 2.45
70 71 2.108952 TCCCTCTCATCCTCGATGATCA 59.891 50.000 0.00 0.00 46.16 2.92
71 72 2.801483 TCCCTCTCATCCTCGATGATC 58.199 52.381 4.86 0.00 46.16 2.92
72 73 2.988636 TCCCTCTCATCCTCGATGAT 57.011 50.000 4.86 0.00 46.16 2.45
73 74 2.988636 ATCCCTCTCATCCTCGATGA 57.011 50.000 4.38 4.38 45.35 2.92
74 75 3.070734 ACAAATCCCTCTCATCCTCGATG 59.929 47.826 0.00 0.00 41.00 3.84
75 76 3.312890 ACAAATCCCTCTCATCCTCGAT 58.687 45.455 0.00 0.00 0.00 3.59
76 77 2.752030 ACAAATCCCTCTCATCCTCGA 58.248 47.619 0.00 0.00 0.00 4.04
77 78 3.639094 ACTACAAATCCCTCTCATCCTCG 59.361 47.826 0.00 0.00 0.00 4.63
78 79 5.129485 TCAACTACAAATCCCTCTCATCCTC 59.871 44.000 0.00 0.00 0.00 3.71
79 80 5.032846 TCAACTACAAATCCCTCTCATCCT 58.967 41.667 0.00 0.00 0.00 3.24
80 81 5.104735 ACTCAACTACAAATCCCTCTCATCC 60.105 44.000 0.00 0.00 0.00 3.51
81 82 5.983540 ACTCAACTACAAATCCCTCTCATC 58.016 41.667 0.00 0.00 0.00 2.92
82 83 6.440647 TGTACTCAACTACAAATCCCTCTCAT 59.559 38.462 0.00 0.00 0.00 2.90
83 84 5.778241 TGTACTCAACTACAAATCCCTCTCA 59.222 40.000 0.00 0.00 0.00 3.27
84 85 6.282199 TGTACTCAACTACAAATCCCTCTC 57.718 41.667 0.00 0.00 0.00 3.20
85 86 6.681729 TTGTACTCAACTACAAATCCCTCT 57.318 37.500 0.00 0.00 34.38 3.69
99 100 6.995686 ACCAACATTGTCATAGTTGTACTCAA 59.004 34.615 13.62 0.00 40.64 3.02
100 101 6.530120 ACCAACATTGTCATAGTTGTACTCA 58.470 36.000 13.62 0.00 40.64 3.41
101 102 7.201530 GCTACCAACATTGTCATAGTTGTACTC 60.202 40.741 13.62 0.00 40.64 2.59
102 103 6.594159 GCTACCAACATTGTCATAGTTGTACT 59.406 38.462 13.62 0.00 40.64 2.73
103 104 6.183360 GGCTACCAACATTGTCATAGTTGTAC 60.183 42.308 13.62 0.00 40.64 2.90
104 105 5.878116 GGCTACCAACATTGTCATAGTTGTA 59.122 40.000 13.62 7.80 40.64 2.41
105 106 4.700213 GGCTACCAACATTGTCATAGTTGT 59.300 41.667 13.62 7.29 40.64 3.32
106 107 4.201812 CGGCTACCAACATTGTCATAGTTG 60.202 45.833 9.71 9.71 41.61 3.16
107 108 3.938963 CGGCTACCAACATTGTCATAGTT 59.061 43.478 0.00 0.00 0.00 2.24
108 109 3.055385 ACGGCTACCAACATTGTCATAGT 60.055 43.478 0.00 0.00 0.00 2.12
109 110 3.309682 CACGGCTACCAACATTGTCATAG 59.690 47.826 0.00 0.00 0.00 2.23
110 111 3.266636 CACGGCTACCAACATTGTCATA 58.733 45.455 0.00 0.00 0.00 2.15
111 112 2.083774 CACGGCTACCAACATTGTCAT 58.916 47.619 0.00 0.00 0.00 3.06
112 113 1.202710 ACACGGCTACCAACATTGTCA 60.203 47.619 0.00 0.00 0.00 3.58
113 114 1.196808 CACACGGCTACCAACATTGTC 59.803 52.381 0.00 0.00 0.00 3.18
114 115 1.202710 TCACACGGCTACCAACATTGT 60.203 47.619 0.00 0.00 0.00 2.71
115 116 1.518325 TCACACGGCTACCAACATTG 58.482 50.000 0.00 0.00 0.00 2.82
116 117 2.151202 CTTCACACGGCTACCAACATT 58.849 47.619 0.00 0.00 0.00 2.71
117 118 1.808411 CTTCACACGGCTACCAACAT 58.192 50.000 0.00 0.00 0.00 2.71
118 119 0.882927 GCTTCACACGGCTACCAACA 60.883 55.000 0.00 0.00 0.00 3.33
119 120 1.574702 GGCTTCACACGGCTACCAAC 61.575 60.000 0.00 0.00 0.00 3.77
120 121 1.302192 GGCTTCACACGGCTACCAA 60.302 57.895 0.00 0.00 0.00 3.67
121 122 2.214216 AGGCTTCACACGGCTACCA 61.214 57.895 0.00 0.00 35.31 3.25
122 123 1.741770 CAGGCTTCACACGGCTACC 60.742 63.158 0.00 0.00 35.31 3.18
123 124 2.391389 GCAGGCTTCACACGGCTAC 61.391 63.158 0.00 0.00 35.31 3.58
124 125 2.047274 GCAGGCTTCACACGGCTA 60.047 61.111 0.00 0.00 35.31 3.93
127 128 3.052082 CTGGCAGGCTTCACACGG 61.052 66.667 6.61 0.00 0.00 4.94
128 129 3.052082 CCTGGCAGGCTTCACACG 61.052 66.667 22.68 0.00 0.00 4.49
129 130 2.674380 CCCTGGCAGGCTTCACAC 60.674 66.667 28.51 0.00 32.73 3.82
130 131 2.853542 TCCCTGGCAGGCTTCACA 60.854 61.111 28.51 3.81 32.73 3.58
131 132 2.360475 GTCCCTGGCAGGCTTCAC 60.360 66.667 28.51 16.33 32.73 3.18
132 133 4.020617 CGTCCCTGGCAGGCTTCA 62.021 66.667 28.51 8.29 32.73 3.02
133 134 2.579684 CTACGTCCCTGGCAGGCTTC 62.580 65.000 28.51 17.53 32.73 3.86
134 135 2.606519 TACGTCCCTGGCAGGCTT 60.607 61.111 28.51 11.46 32.73 4.35
135 136 2.880629 ATCTACGTCCCTGGCAGGCT 62.881 60.000 28.51 11.76 32.73 4.58
136 137 2.435693 ATCTACGTCCCTGGCAGGC 61.436 63.158 28.51 14.42 32.73 4.85
137 138 1.043116 TCATCTACGTCCCTGGCAGG 61.043 60.000 27.04 27.04 34.30 4.85
138 139 0.387202 CTCATCTACGTCCCTGGCAG 59.613 60.000 7.75 7.75 0.00 4.85
139 140 0.033503 TCTCATCTACGTCCCTGGCA 60.034 55.000 0.00 0.00 0.00 4.92
140 141 1.271102 GATCTCATCTACGTCCCTGGC 59.729 57.143 0.00 0.00 0.00 4.85
141 142 2.294791 GTGATCTCATCTACGTCCCTGG 59.705 54.545 0.00 0.00 0.00 4.45
142 143 2.294791 GGTGATCTCATCTACGTCCCTG 59.705 54.545 0.00 0.00 0.00 4.45
143 144 2.588620 GGTGATCTCATCTACGTCCCT 58.411 52.381 0.00 0.00 0.00 4.20
144 145 1.267261 CGGTGATCTCATCTACGTCCC 59.733 57.143 0.00 0.00 0.00 4.46
145 146 1.335142 GCGGTGATCTCATCTACGTCC 60.335 57.143 0.00 0.00 33.75 4.79
146 147 1.333931 TGCGGTGATCTCATCTACGTC 59.666 52.381 0.00 0.00 33.75 4.34
147 148 1.389555 TGCGGTGATCTCATCTACGT 58.610 50.000 0.00 0.00 33.75 3.57
148 149 2.713895 ATGCGGTGATCTCATCTACG 57.286 50.000 0.00 0.00 34.13 3.51
149 150 4.626042 AGAAATGCGGTGATCTCATCTAC 58.374 43.478 0.00 0.00 0.00 2.59
150 151 4.944619 AGAAATGCGGTGATCTCATCTA 57.055 40.909 0.00 0.00 0.00 1.98
151 152 3.834489 AGAAATGCGGTGATCTCATCT 57.166 42.857 0.00 0.00 0.00 2.90
152 153 3.873361 TCAAGAAATGCGGTGATCTCATC 59.127 43.478 0.00 0.00 0.00 2.92
153 154 3.875727 CTCAAGAAATGCGGTGATCTCAT 59.124 43.478 0.00 0.00 0.00 2.90
154 155 3.055891 TCTCAAGAAATGCGGTGATCTCA 60.056 43.478 0.00 0.00 0.00 3.27
155 156 3.308323 GTCTCAAGAAATGCGGTGATCTC 59.692 47.826 0.00 0.00 0.00 2.75
156 157 3.265791 GTCTCAAGAAATGCGGTGATCT 58.734 45.455 0.00 0.00 0.00 2.75
157 158 2.352960 GGTCTCAAGAAATGCGGTGATC 59.647 50.000 0.00 0.00 0.00 2.92
158 159 2.026822 AGGTCTCAAGAAATGCGGTGAT 60.027 45.455 0.00 0.00 0.00 3.06
159 160 1.347707 AGGTCTCAAGAAATGCGGTGA 59.652 47.619 0.00 0.00 0.00 4.02
160 161 1.813513 AGGTCTCAAGAAATGCGGTG 58.186 50.000 0.00 0.00 0.00 4.94
161 162 2.427506 GAAGGTCTCAAGAAATGCGGT 58.572 47.619 0.00 0.00 0.00 5.68
162 163 1.740025 GGAAGGTCTCAAGAAATGCGG 59.260 52.381 0.00 0.00 0.00 5.69
163 164 1.394917 CGGAAGGTCTCAAGAAATGCG 59.605 52.381 0.00 0.00 0.00 4.73
178 179 2.164624 ACAGTTCTCGATCTTCCGGAAG 59.835 50.000 34.19 34.19 39.71 3.46
179 180 2.094700 CACAGTTCTCGATCTTCCGGAA 60.095 50.000 17.73 17.73 0.00 4.30
180 181 1.472878 CACAGTTCTCGATCTTCCGGA 59.527 52.381 0.00 0.00 0.00 5.14
181 182 1.472878 TCACAGTTCTCGATCTTCCGG 59.527 52.381 0.00 0.00 0.00 5.14
182 183 2.921634 TCACAGTTCTCGATCTTCCG 57.078 50.000 0.00 0.00 0.00 4.30
183 184 4.564769 GTGAATCACAGTTCTCGATCTTCC 59.435 45.833 8.74 0.00 34.08 3.46
184 185 5.061560 GTGTGAATCACAGTTCTCGATCTTC 59.938 44.000 17.28 0.00 45.43 2.87
185 186 4.926238 GTGTGAATCACAGTTCTCGATCTT 59.074 41.667 17.28 0.00 45.43 2.40
186 187 4.489810 GTGTGAATCACAGTTCTCGATCT 58.510 43.478 17.28 0.00 45.43 2.75
187 188 4.831741 GTGTGAATCACAGTTCTCGATC 57.168 45.455 17.28 0.00 45.43 3.69
198 199 2.948979 TGGAGTTGGTTGTGTGAATCAC 59.051 45.455 6.41 6.41 46.31 3.06
199 200 3.213506 CTGGAGTTGGTTGTGTGAATCA 58.786 45.455 0.00 0.00 0.00 2.57
200 201 2.030805 GCTGGAGTTGGTTGTGTGAATC 60.031 50.000 0.00 0.00 0.00 2.52
201 202 1.956477 GCTGGAGTTGGTTGTGTGAAT 59.044 47.619 0.00 0.00 0.00 2.57
202 203 1.340502 TGCTGGAGTTGGTTGTGTGAA 60.341 47.619 0.00 0.00 0.00 3.18
203 204 0.254462 TGCTGGAGTTGGTTGTGTGA 59.746 50.000 0.00 0.00 0.00 3.58
204 205 0.381801 GTGCTGGAGTTGGTTGTGTG 59.618 55.000 0.00 0.00 0.00 3.82
205 206 1.095228 CGTGCTGGAGTTGGTTGTGT 61.095 55.000 0.00 0.00 0.00 3.72
206 207 0.813610 TCGTGCTGGAGTTGGTTGTG 60.814 55.000 0.00 0.00 0.00 3.33
207 208 0.108585 ATCGTGCTGGAGTTGGTTGT 59.891 50.000 0.00 0.00 0.00 3.32
208 209 0.798776 GATCGTGCTGGAGTTGGTTG 59.201 55.000 0.00 0.00 0.00 3.77
209 210 0.687354 AGATCGTGCTGGAGTTGGTT 59.313 50.000 0.00 0.00 0.00 3.67
210 211 0.687354 AAGATCGTGCTGGAGTTGGT 59.313 50.000 0.00 0.00 0.00 3.67
211 212 2.672961 TAAGATCGTGCTGGAGTTGG 57.327 50.000 0.00 0.00 0.00 3.77
212 213 4.526970 CAATAAGATCGTGCTGGAGTTG 57.473 45.455 0.00 0.00 0.00 3.16
493 494 0.732538 GGCCCGAAAAGCAATTCACG 60.733 55.000 0.00 0.00 0.00 4.35
613 614 0.599204 TCTGTTCCGCCGAAACACTC 60.599 55.000 0.00 0.00 33.30 3.51
616 617 1.011968 CGATCTGTTCCGCCGAAACA 61.012 55.000 0.00 0.00 35.44 2.83
618 619 2.098233 GCGATCTGTTCCGCCGAAA 61.098 57.895 0.00 0.00 45.06 3.46
635 636 2.795389 GCGCCGACAAAACTTCGC 60.795 61.111 0.00 0.00 35.06 4.70
651 713 0.713329 CGCAAAACGCATTTAAGGGC 59.287 50.000 0.00 0.00 42.60 5.19
657 719 1.006688 GGTCCCGCAAAACGCATTT 60.007 52.632 0.00 0.00 42.60 2.32
660 722 1.003112 ATAGGTCCCGCAAAACGCA 60.003 52.632 0.00 0.00 42.60 5.24
675 737 4.116961 TCAAAACCGGTCGCATTAGATAG 58.883 43.478 8.04 0.00 0.00 2.08
677 739 2.980568 TCAAAACCGGTCGCATTAGAT 58.019 42.857 8.04 0.00 0.00 1.98
704 791 6.173191 ACTAATCGGTTTGATTTGTAACGG 57.827 37.500 0.00 0.00 46.54 4.44
722 822 5.048991 GTCCACATTTCAACACCGAACTAAT 60.049 40.000 0.00 0.00 0.00 1.73
730 830 3.383185 TGGAAAGTCCACATTTCAACACC 59.617 43.478 0.00 0.00 42.67 4.16
731 831 4.647424 TGGAAAGTCCACATTTCAACAC 57.353 40.909 0.00 0.00 42.67 3.32
753 853 9.674824 GATACTTTATTCATTTGCATCCAAGAG 57.325 33.333 0.00 0.00 31.52 2.85
754 854 9.412460 AGATACTTTATTCATTTGCATCCAAGA 57.588 29.630 0.00 0.00 31.52 3.02
757 857 9.288576 CCTAGATACTTTATTCATTTGCATCCA 57.711 33.333 0.00 0.00 0.00 3.41
758 858 8.239998 GCCTAGATACTTTATTCATTTGCATCC 58.760 37.037 0.00 0.00 0.00 3.51
760 860 7.946776 AGGCCTAGATACTTTATTCATTTGCAT 59.053 33.333 1.29 0.00 0.00 3.96
761 861 7.290061 AGGCCTAGATACTTTATTCATTTGCA 58.710 34.615 1.29 0.00 0.00 4.08
763 863 9.566432 AAGAGGCCTAGATACTTTATTCATTTG 57.434 33.333 4.42 0.00 0.00 2.32
768 868 9.713713 CCTTAAAGAGGCCTAGATACTTTATTC 57.286 37.037 19.05 0.00 39.09 1.75
769 869 8.661345 CCCTTAAAGAGGCCTAGATACTTTATT 58.339 37.037 19.05 2.82 44.85 1.40
770 870 7.795171 ACCCTTAAAGAGGCCTAGATACTTTAT 59.205 37.037 19.05 6.65 44.85 1.40
771 871 7.137567 ACCCTTAAAGAGGCCTAGATACTTTA 58.862 38.462 15.97 15.97 44.85 1.85
772 872 5.971260 ACCCTTAAAGAGGCCTAGATACTTT 59.029 40.000 17.64 17.64 44.85 2.66
773 873 5.539842 ACCCTTAAAGAGGCCTAGATACTT 58.460 41.667 4.42 0.35 44.85 2.24
774 874 5.159139 ACCCTTAAAGAGGCCTAGATACT 57.841 43.478 4.42 0.00 44.85 2.12
775 875 5.612351 CAACCCTTAAAGAGGCCTAGATAC 58.388 45.833 4.42 0.00 44.85 2.24
776 876 4.102681 GCAACCCTTAAAGAGGCCTAGATA 59.897 45.833 4.42 0.00 44.85 1.98
777 877 3.117851 GCAACCCTTAAAGAGGCCTAGAT 60.118 47.826 4.42 0.00 44.85 1.98
778 878 2.238898 GCAACCCTTAAAGAGGCCTAGA 59.761 50.000 4.42 0.00 44.85 2.43
779 879 2.239907 AGCAACCCTTAAAGAGGCCTAG 59.760 50.000 4.42 0.00 44.85 3.02
780 880 2.026262 CAGCAACCCTTAAAGAGGCCTA 60.026 50.000 4.42 0.00 44.85 3.93
781 881 1.076438 AGCAACCCTTAAAGAGGCCT 58.924 50.000 3.86 3.86 44.85 5.19
782 882 1.177401 CAGCAACCCTTAAAGAGGCC 58.823 55.000 0.00 0.00 44.85 5.19
783 883 1.911057 ACAGCAACCCTTAAAGAGGC 58.089 50.000 0.00 0.00 44.85 4.70
784 884 2.029918 GCAACAGCAACCCTTAAAGAGG 60.030 50.000 0.00 0.00 45.86 3.69
785 885 2.029918 GGCAACAGCAACCCTTAAAGAG 60.030 50.000 0.00 0.00 0.00 2.85
786 886 1.960689 GGCAACAGCAACCCTTAAAGA 59.039 47.619 0.00 0.00 0.00 2.52
787 887 1.000843 GGGCAACAGCAACCCTTAAAG 59.999 52.381 0.00 0.00 40.75 1.85
791 891 1.382420 TTGGGCAACAGCAACCCTT 60.382 52.632 0.00 0.00 44.56 3.95
816 916 1.970640 GTGCCTTCCCATGGACTTTTT 59.029 47.619 15.22 0.00 0.00 1.94
829 936 1.466558 GCTGAGCAACTAAGTGCCTTC 59.533 52.381 0.00 0.00 46.14 3.46
831 938 0.322008 GGCTGAGCAACTAAGTGCCT 60.322 55.000 6.82 0.00 46.14 4.75
833 940 0.606401 TGGGCTGAGCAACTAAGTGC 60.606 55.000 6.82 0.00 45.28 4.40
834 941 2.012673 GATGGGCTGAGCAACTAAGTG 58.987 52.381 6.82 0.00 0.00 3.16
835 942 1.912043 AGATGGGCTGAGCAACTAAGT 59.088 47.619 6.82 0.00 0.00 2.24
836 943 2.706339 AGATGGGCTGAGCAACTAAG 57.294 50.000 6.82 0.00 0.00 2.18
838 945 2.170607 GGTTAGATGGGCTGAGCAACTA 59.829 50.000 6.82 1.04 31.54 2.24
839 946 1.065126 GGTTAGATGGGCTGAGCAACT 60.065 52.381 6.82 2.04 31.54 3.16
840 947 1.340017 TGGTTAGATGGGCTGAGCAAC 60.340 52.381 6.82 0.16 37.62 4.17
841 948 0.991146 TGGTTAGATGGGCTGAGCAA 59.009 50.000 6.82 0.00 37.62 3.91
842 949 1.134007 CATGGTTAGATGGGCTGAGCA 60.134 52.381 6.82 0.00 43.47 4.26
843 950 1.602311 CATGGTTAGATGGGCTGAGC 58.398 55.000 0.00 0.00 0.00 4.26
844 951 2.267174 CCATGGTTAGATGGGCTGAG 57.733 55.000 2.57 0.00 39.53 3.35
857 971 2.671070 CGGTTCTCAGCCCATGGT 59.329 61.111 11.73 0.00 0.00 3.55
888 1002 3.090532 ACGGGAATCCTGAGCCCC 61.091 66.667 16.23 0.00 38.69 5.80
935 1052 0.549169 TGGGGGAAACGGGAAGAGAT 60.549 55.000 0.00 0.00 0.00 2.75
954 1071 3.589988 CTTCGTTGTGCTTGTAGAGGAT 58.410 45.455 0.00 0.00 0.00 3.24
960 1077 1.724623 GATCGCTTCGTTGTGCTTGTA 59.275 47.619 0.00 0.00 0.00 2.41
962 1079 0.179215 GGATCGCTTCGTTGTGCTTG 60.179 55.000 0.00 0.00 0.00 4.01
971 1088 3.425525 GTGTATGTGTATGGATCGCTTCG 59.574 47.826 0.00 0.00 0.00 3.79
985 1102 1.203758 TGGCTCGGTGTAGTGTATGTG 59.796 52.381 0.00 0.00 0.00 3.21
1020 1137 2.289820 CTCGGTTCCGTTCGATCTGATA 59.710 50.000 11.04 0.00 34.77 2.15
1036 1168 4.070552 GCTGCCTCGGTTCTCGGT 62.071 66.667 0.00 0.00 39.77 4.69
1052 1184 4.873129 TCTCGCGCGATCCCTTGC 62.873 66.667 34.86 0.00 0.00 4.01
1054 1186 1.945354 TTCTTCTCGCGCGATCCCTT 61.945 55.000 34.86 0.00 0.00 3.95
1071 1203 2.032675 GCTGCCGATTTCCTCTGAATTC 59.967 50.000 0.00 0.00 0.00 2.17
1385 1542 3.423154 CAGAACCGGAACTGCGGC 61.423 66.667 9.46 0.00 0.00 6.53
1397 1554 2.747855 CCGCAGAAGGGGCAGAAC 60.748 66.667 0.00 0.00 41.32 3.01
1451 1615 2.232298 CTGTTCCTCTCTGGGCGGTC 62.232 65.000 0.00 0.00 36.20 4.79
1454 1618 1.254284 ACTCTGTTCCTCTCTGGGCG 61.254 60.000 0.00 0.00 36.20 6.13
1472 1636 2.234908 AGAGCACCATCACCTCTGTAAC 59.765 50.000 0.00 0.00 34.82 2.50
1473 1637 2.497675 GAGAGCACCATCACCTCTGTAA 59.502 50.000 0.00 0.00 36.16 2.41
1474 1638 2.103373 GAGAGCACCATCACCTCTGTA 58.897 52.381 0.00 0.00 36.16 2.74
1475 1639 0.901124 GAGAGCACCATCACCTCTGT 59.099 55.000 0.00 0.00 36.16 3.41
1476 1640 1.136695 GAGAGAGCACCATCACCTCTG 59.863 57.143 0.00 0.00 36.16 3.35
1477 1641 1.006998 AGAGAGAGCACCATCACCTCT 59.993 52.381 0.00 0.00 38.58 3.69
1478 1642 1.408702 GAGAGAGAGCACCATCACCTC 59.591 57.143 0.00 0.00 0.00 3.85
1479 1643 1.006998 AGAGAGAGAGCACCATCACCT 59.993 52.381 0.00 0.00 0.00 4.00
1487 1651 3.081061 TCAGAGTTGAGAGAGAGAGCAC 58.919 50.000 0.00 0.00 0.00 4.40
1489 1653 4.009675 TCTTCAGAGTTGAGAGAGAGAGC 58.990 47.826 0.00 0.00 34.15 4.09
1500 1670 7.675962 AGTAGTACTACTGTCTTCAGAGTTG 57.324 40.000 30.33 0.00 44.11 3.16
1565 1736 0.879400 CGGCAGCACAATTTTGGCAA 60.879 50.000 0.00 0.00 37.24 4.52
1569 1740 1.854664 GCACGGCAGCACAATTTTG 59.145 52.632 0.00 0.00 0.00 2.44
1573 1744 3.726517 GACGCACGGCAGCACAAT 61.727 61.111 0.00 0.00 0.00 2.71
1590 1761 6.705381 ACAAACATTTCACCACATTTACATGG 59.295 34.615 0.00 0.00 42.13 3.66
1591 1762 7.712264 ACAAACATTTCACCACATTTACATG 57.288 32.000 0.00 0.00 36.34 3.21
1653 1824 5.437289 TGAGATTTTGTGTGGTGTGATTC 57.563 39.130 0.00 0.00 0.00 2.52
1654 1825 5.850557 TTGAGATTTTGTGTGGTGTGATT 57.149 34.783 0.00 0.00 0.00 2.57
1655 1826 5.737063 GCTTTGAGATTTTGTGTGGTGTGAT 60.737 40.000 0.00 0.00 0.00 3.06
1656 1827 4.439974 GCTTTGAGATTTTGTGTGGTGTGA 60.440 41.667 0.00 0.00 0.00 3.58
1662 1833 7.473027 AATTTGAGCTTTGAGATTTTGTGTG 57.527 32.000 0.00 0.00 0.00 3.82
1683 1854 3.005155 GTCTCTGCTTGGAAGTGCAAATT 59.995 43.478 0.00 0.00 38.81 1.82
1684 1855 2.555757 GTCTCTGCTTGGAAGTGCAAAT 59.444 45.455 0.00 0.00 38.81 2.32
1694 1865 2.591571 TGATGATCGTCTCTGCTTGG 57.408 50.000 15.81 0.00 0.00 3.61
1764 1935 5.067153 TCTGTCTCTAGTAGAATTCTGCTGC 59.933 44.000 29.70 16.86 39.29 5.25
1871 2069 1.021390 GGCACGGACACTGATTCCAG 61.021 60.000 0.00 0.00 45.76 3.86
1877 2075 2.598099 TACGGGCACGGACACTGA 60.598 61.111 15.46 0.00 46.48 3.41
2027 2228 3.912907 GACGGGATCGCGATGGGT 61.913 66.667 35.09 20.17 40.63 4.51
2146 2350 3.292460 CTCGGGATCAAGTCCTACTTCT 58.708 50.000 0.00 0.00 46.91 2.85
2320 2648 3.001634 CCGATGAATATGCTGTGTGTGTC 59.998 47.826 0.00 0.00 0.00 3.67
2321 2649 2.938451 CCGATGAATATGCTGTGTGTGT 59.062 45.455 0.00 0.00 0.00 3.72
2346 2693 3.872728 CGATCCAGGCGACGACGA 61.873 66.667 12.29 0.00 42.66 4.20
2371 2718 0.252479 CATGGTGAGCTCAGCTTCCT 59.748 55.000 37.50 21.27 44.12 3.36
2372 2719 0.251354 TCATGGTGAGCTCAGCTTCC 59.749 55.000 37.50 25.91 44.12 3.46
2374 2721 1.207570 CTCTCATGGTGAGCTCAGCTT 59.792 52.381 37.50 30.98 43.95 3.74
2375 2722 0.825410 CTCTCATGGTGAGCTCAGCT 59.175 55.000 37.50 24.17 43.95 4.24
2376 2723 0.179078 CCTCTCATGGTGAGCTCAGC 60.179 60.000 33.67 33.67 43.95 4.26
2377 2724 1.136695 GTCCTCTCATGGTGAGCTCAG 59.863 57.143 18.89 5.39 43.95 3.35
2378 2725 1.189752 GTCCTCTCATGGTGAGCTCA 58.810 55.000 13.74 13.74 43.95 4.26
2549 2902 4.789075 CGAGTGCGTGTACCCCGG 62.789 72.222 0.00 0.00 0.00 5.73
2570 2923 0.695924 AATGACATCGGGGTGTCCAA 59.304 50.000 9.43 0.00 46.17 3.53
2577 2930 1.889105 CAGCGGAATGACATCGGGG 60.889 63.158 0.00 0.00 0.00 5.73
2579 2932 2.874694 CGCAGCGGAATGACATCGG 61.875 63.158 7.00 0.00 0.00 4.18
2580 2933 2.622629 CGCAGCGGAATGACATCG 59.377 61.111 7.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.