>input_sequence_73312
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----------------------------------------------------------------------------GAGC
CATCAAACCAACACTTTATCAGATCGAA---------------CGGAACCGAGAACCGAGGCAGCAAGGGATCGCGCGAG
AAGAATTCAGAGGAAATCGGCAGCGATCGAG----------AGGCGCGGCGATGTTCTTCTTCTTCGTGGGCGGCGTGGA
GCAGGGCGCGGGGCGGGTGCTCAAGGAGGCGGCCGGGCGGTGCGTGCGCTGCGGCGGCGCGGCCGACCTGGTGGAGACCG
AGAAGGTGCTCAAGCTCTTCTTCGTCCCGGCGTGGCGGTGGCCCGGCAAGGACCCCGCCTACCTCTGCCGCGACTGCGGC
CTCCTTGCGCCGTGCTCCCT------CGGCGGCGGGGA---------GCTCCTCCCCCGCGCGGGGGCGGGGCAGTGCGG
CGCGTGCAGCCGCGCCGTCGAGCCGCAGTTCCGGTTCTGCCCCTTCTGCGGCTCCGCGCTGTGAAGT-------GATGGA
TGCGCGTTGCAGGCGACCGCCCAGAGAGGAACAGAGTTACAGAGGTGATGGTG------CTCTCTCTCTCAACTCTGAAG
ACAGTAGTAC-TACTAGGTTTGTGCAGCAGAGTTATCAGTAAGCTTTTTTTGGTTTTGCCAAAATTGTGCTGCCGTGCGT
CCATGTAAATGTGGTGAAATGTTTGTAATAAACGAAATCGATAAAA----------------------------------
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>chr1D_1_TraesCS1D01G271900
CTAGAACACCTATGCTAAGCTACGTATTTTGATTGTGAAGATTTGCGATTCTGACAACATATTAACAACATGATCATCGA
GGATGAGAGGGATTTGTAGTTGAGTACAACTATGACAATGTTGGTAGCCGTGTGAAGCCTGCCAGGGACGTAGATGAGAT
CACCGCATTTCTTGAGACCTTCCGGAAGATCGAGAACTGTGATTCACACAACCAACTCCAGCACGATCTTATTGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNATTTGAACAATTTGGTGTTGTAATCATTAATTGAATTTGAACATTTATTGTAATGAAA
ACTATTGTTGTATCGTGAATTGCTTTTCGGGCCATTTATATATTTGTATGTTGAATTTATATTACGATTCCATTTGGTTC
ATATTATTGAAATGTGTAATTTATTCGATGCTATGTAAAATTTACGGTGCCGCGAGTGTTTCGGCGGAACAGATCGCG--
-----------------------------------------------------------AAGTTTTGTCGGCGCCCTTAA
ATGCGTTTTGCGGGACCTA-------------------------TCTAATGCGACCGGTTTTGAAGATGACCGTTACAAA
TCAA-------------ACCGATTAGTTCGGTGTTGAAATGTGGACTTTCCACTCTTGGATGCAAATGAATAAAGTATCT
AGGCCTCTTTAAGGGTTGCTGTTGCCCAACAAAAAA-------AAAAGTCCATGGGAAGGCACTTAGTTGC-------TC
AGCCCATCTAACCATGGGCTGAGAACCGGCCCTCCCCCTCCGGGG---CTCAGGATTCCCGTCCAAATCCGATATTCCGA
GCTCTCCAGAAATCTCTTCCCGTTTCCCCCATCCTCTACAAGCACAACGAAGCGATCCATACACATACACTACACCGAGC
CATCAAACCAACACTTTATCAGATCGAA---------------CGGAACCGAGAACCGAGGCAGCAAGGGATCGCGCGAG
AAGAATTCAGAGGAAATCGGCAGCGATCGAG----------AGGCGCGGCGATGTTCTTCTTCTTCGTGGGCGGCGTGGA
GCAGGGCGCGGGGCGGGTGCTCAAGGAGGCGGCCGGGCGGTGCGTGCGCTGCGGCGGCGCGGCCGACCTGGTGGAGACCG
AGAAGGTGCTCAAGCTCTTCTTCGTCCCGGCGTGGCGGTGGCCCGGCAAGGACCCCGCCTACCTCTGCCGCGACTGCGGC
CTCCTTGCGCCGTGCTCCCT------CGGCGGCGGGGA---------GCTCCTCCCCCGCGCGGGGGCGGGGCAGTGCGG
CGCGTGCAGCCGCGCCGTCGAGCCGCAGTTCCGGTTCTGCCCCTTCTGCGGCTCCGCGCTGTGAAGT-------GATGGA
TGCGCGTTGCAGGCGACCGCCCAGAGAGGAACAGAGTTACAGAGGTGATGGTG------CTCTCTCTCTCAACTCTGAAG
ACAGTAGTAC-TACTAGGTTTGTGCAGCAGAGTTATCAGTAAGCTTTTTTTGGTTTTGCCAAAATTGTGCTGCCGTGCGT
CCATGTAAATGTGGTGAAATGTTTGTAATAAACGAAATCGATAAAATTCGTCGCATCATCGGCGAATCACACCACACAAA
ATCTCAAAGCTCAAATTTGCACTTCCAAGCAGAGACGATCATCATTCACCACAACGGGAACAGCCTACGAGCCGTGACCC
GTGTGGTGATTTACGCAGCAGAATTCTACTAGAGACAGAAGAACATAGCACGCCTGC-----------------------
----ACATAGGCCAGTGATCAATCTACACGGCTTGCCCGTATCCTTGACCCTGAGGGGGAGCAGCGGGCTGGAATCAGTG
TCCGTGCCCGTACCCCTGAGCAGGAGGAGGGTACTGTCC---ATACCCCTGCGCGTTTGGAGGGGGCGGGTACTGCCCGT
ACCCCTGCGCGTTCGGAGGCGGAGGGTAGTGCGCGTACGGCGCCTGCCCGTACATCGGAGCAGGGTGACCCATCGCGATC
CCGTCGGGCTTGGGCTCGCCCGCCGACGACGGCCCCGCCACGGCCCCCGGGTATCCTGGCACAGCAGCAGCCGCCGCCGC
C---GCCGTGGCCGCAGCGGCGCGAAGCAAGAAGTAGGACTTGATCCCGAGCACGGT-----------------------
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---------------------TGCGATGATGCTCAGGATGGCCGCCCTCCTGAACACGCCGTCCCTGACGAAGTAGCACC
CCGTGTTGACCTCGCGCGTCACCGGCGCGTTCCACGCCGCGCCCTGCACGAAGTAGATCTCCGCGATCACCGTCGCCACC
CTGCACGGACAC----ACACAGCATATTCATCGG---------------TCGTCGTCGTCGCCTGGATCGAATCGGAAGG
AAGCTG------AGCTCACCATGAGAGGACGGCGAAGACGACGCCGATGTTCCGCCTGGACGCGGAGAAGGCGGCGCCCC
GGGGCTTGCAGCAGCCGCAGCAGCGGCCGGCGGCCGAGACGGTGATCTGGGCCGCCAGCAGCAGGAGCGCCGCGACCAGC
CCCAGCGCGAACGCCGGGTTGCCGGGGTACACGCACTCGGTCTTGGACACCCCGATGTCATTCCGCTGCGCGCCGCAAGC
ACAAGCATCCCGATGTCAGCTCAGTTTC
>chr1A_423
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----------------------ATTTGAACAATTTGTTGTTGTAATAATTATTTAAATTTGAACATTTGTTCTAATGAAA
ACTATTGTTGTATTGTGAATTGCTTTTCAGACCATTCATATATTCGTATGTTGAATTTATATTACGATTCCATTCGATCC
ATATTATTGACATGTGTAATTTATTCGATGCTATGTAAAATTTACGGTGTCGTAAGCGCTCCTGCGGAACAGATCTCGTC
CCATAAGTTTGTGGGATGTGTTTACGTGATCTGTTCCACCGGAGCGCGCACCGTTTAAAAAGTTTTGCCAGC-CCCTTGA
ACGCGTTTTGCGGGACGTCCGGTTGCGTGGTCTGCTAGAGATGCTCTAATGCGAGCGGTTTTGAAGATGATGGTTACAAA
TCAAACAAATCAAACCGACTGGTTAGTTCAATGTTGAAATGTGGACAAATCAAACCGAGCGGT-----------------
-------TTTGAGGTTTGCTGTTGCCAAAAAAAAAGAGTACACAAAAGTCCATGGAAGGCACGTCGCAAATTGGTCGTTC
AGCCCATCTACCCATGGGCTGAGAACCGGCCCTCCCCCTCCAGGGCATCTCAGGATTCCGGCCCAAGTCCGACGTTCCGA
GCTCTCCAGAATTCTCTTCCCGTTTCCCCCTTCCTCCAGAAGCACAAGGAAGCGATCCAC------ACACTACACCGAGC
CATCAAACCAACACTTCATCAGATCGAACCGAGCCAGATCGACCGGAGCCGAGAACCGAGGCAACGAGGGATCGCGCGAG
AAAAATTCAGAGGAAATCGGCAGCGATCGAG----------AGGCGCGGCGATGTTCTTCTTCTTCGTAGGCGGCGTGGA
GCAGGGCGCGGGGCGGGTGCTCAAGGAGGCGGCCGGGCGGTGCGTGCGCTGCGGCGGCGCGGCCGACCTGGTGGAGACCG
AGAAGGTGCTCAAGCTCTTCTTCGTCCCCGCGTGGCGGTGGCCGGGCAAGGACCCCGCCTACCTCTGCCGCGACTGCGGC
CTCCTCGCGCCGGGGTCCCACGGCGCCGGCGGCGGGGA---------GCTCCTCCCCCGCGCGGGGGCGGGGCAATGCGG
CGCGTGCAGCCGCGCCGTCGACCCGCAGTTCCGCTTCTGCCCCTTCTGCGGCTCCGCGCTGTGAAGGCGCCATGGATGGA
TGCGCGTTGCAGGCCACGGCCCAGAGAGGAGCAGA--------GGTGATGATCCTCTCTCTCTCTCTCTGAACTCTCAAG
ACAGTAGTA-GTACTAGGGTTGTGCAGCAGAGTTGTCAGTTAGCTTCT---GGTTCTGCGGAAGTTGTGCTAACCTGTGT
GGATGTAAATTTGGTGAAATGTTTGTAATAAACGAGACCGATAAAATTCGTCGCATCATCGGCAGCGCACACTACACAAA
ATCTCAAAACTCAG-TTTGCACTTTCAAGCAGAGACGATCATCATTCACCACAACGGGAACAGCCTACGAGCTGTGACCC
GTGTGGTGATTTACACAGCTGAATTATGGA--AGACGGAAGAACATGGCATAGATGAAGAACCAAGACATGCTTGCACAT
AACTACATAAGCCAGTGATCAATCTACACGGCTTGCCCGTATCCTTGACCCTGAGGGGGAGCATCGGGGTGGAA------
---CTGTCCGTACCCCTGAGCAGGAGGAGGGTACTGTCCTCCATACCCCTGCGCGTTTGGAGGGGGAGGGTACTGCCCGT
ATCCCTGCGCGTTCGGAGGCGGAGGGTAGTGCGCGTACGGCGCCTGCCCGTACATCGGAGCAGGGTGGCCCATCGCGATG
CCGTCGGGCTTGGGCTCGCCCGCCGACGACGGCCCCGCCACGGCCCCCGGGTATCCCGGCGCAGCAGCCGCTGCCGTTGC
CGTGGCCGTGGCCGCGGCGGCGCGAAGCAGGAAGTAGGACTTGATCCCGAGCACGGT-----------------------
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---------------------GGCGATGATGCTCAGGATGGCCGCCCTCCTGAACACGCCGTCCCTGACGAAGTAGCACC
CCGTGTTGACCTCGCGCGTCACCGGCGCGTTCCACGCCGCGCCCTGCACGAAGTAGATCTCCGCGATCACCGTCGCCACC
CTGCACG--CAC----ATACAGCATATTCATCCCCCGTTGAATTGT---------TCGTCGCCTGGATCGAATCGGGGCG
CGCGCGGAAGGAGGCTCACCATGAGAGGACGGCGAAGACGACGCCGATGTTGCGCCTGGACGCGGAGAAGGCGGCGCCCC
GGGGCTTGCAGCAGCCGCAGCAGCGGCCGGCGGCCGAGACGGTGATCTGGGCCGCCAGCAGCAGGAGCGCCGCGACCAGC
CCCAGCGCCAACGCCGGGTTGGCGGGGTACACGCACTCGGTCCTGGACATCGAGATGTCATTCCGCTGCGCGCCGCGAGC
ACAAGCATCCCGATGTCAGCTCAGTTTC
>chr1A_841
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----------------------------------------------------------------------------GTTC
AGCCCATCTACCCATGTGCTGAGAACCGGCCCTCCCCCTCCAGGCCATCTCAGGATTCCCGTCCAGATCCAATATTCTGA
GCTCTCCAGAATTGTCAGTCCGTTTCTCCCTTCCTCCAAAAGTGCAAGGAAGCGATCCAC------ACACTACACCGAGC
CATCAAACTAACACTTCATCAGATCGAT---------------CGGAGCTGAGAACCGAGGCAAGGAGGGGTCGTGCGAG
AAAAATTCAGAAGAAATCGGCAGCGATCGAGGACGAGCGAGAGGCGCAACGATG---TTCTTCTTCGTGGGCGGCGTGGA
GCAGGGCGCAGGACGGGTCCTCAAGGAGGCGGCCGGGCGGTGCCTGCGCTGTGGCGGCGTGACCGATCTGGTGGAGACCG
AGAAGGTGCTCAAGCTCTTCTTCGTGTCGGCGTGGCCGTGGCCGGGCAAGGACCCCGCCTACCTCTGCCGCGACTGC-GC
CTCCTCGCGCCGGGGTCCCACGGCGCCGGCGGCGGGGA---------GCTCCTCCCCCGCGCGGGGGCGGGGCAATGCGG
CGCGTGCAGCCGCGCCGTCGACCCGCAGTTCCGCTTCTGCCCCTTCTGCGGCTCCGCGCTGTGAAGGCGCCATGGATGGA
TGCGCGTTGCAGGCCACGGCCCAGAGAGGAGCAGA--------GGTGATGATCCT--CTCTCTCTCTCTGAACTCTCAAG
ACAGTAGTA-GGGGCAAGGACCCCGC------------------------------------------------------
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----------------------------------------------------------------------CTACCTCTGT
CGTGACTGTGGCCTCCTCGCGCCAGGGTCCCTCGGCAACAGGAAGCCGAGCCCGGGCCTGCTCCTCCCCCGCGTGGGGCA
GTGCTGCCGACCGACAGTTCCGGTTCTGCCCCTTCTGCGGCTTCGCACTGTGAAGTGCGCCATGGATGCGTGTTGCAGGC
GACGGCCCAGAGAGGAACATAGGTGATGATGCTCTTTCTTTGAACTCTCAAGACAATAGTA-------------------
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>chr1B_956
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-------------------------------TCCTCCAGAAGCGCAAGGACGCGATCCATAGACATACACTACACCGAGC
CATCAAACCAACACTTCATCAGATCGAT---------------CGGAGCCGAGAACCGAGGCAACGAGGGATCGTGCGAG
AAAAATTCAGAGGGAATCGCCAGCGATCGAGGACGAGCGGAAGGCGCGGCGATGTTCTTCTTCTTCGTGGGCGGCGTGGA
GCAGGGCGCGGGGCGGGTGCTCAAGGAGGCGGCCGGGCGGTGCGTGCGCTGCGGCGGCGCGGCCGACCTGGTGGAGACCG
AGAAGGTGCTCAAGCTCTTCTTCGTGCCGGCGTGGCGGTGGCCGGGCAAGGACCCCGCCTACCTCTGCCGCGACTGCGGC
CTCCTCGCGCCGGGGTCCCTCGGCGGCGGGGAGCCGGGCCCGGGACCGCTCCTCCCCCGCGCGGGGGCGGCGCAGTGCGG
CGCGTGCAGCCGCGCCGTCGACCCGCAGTTCCGCTTCTGCCCCTTCTGCGGCTCCGCGCTGTGAAGCGCGCC---ATGGA
TGCGCGTTGCAGGCCACGGCCCAGAGAGGGACAGA--------GGTGATGATC------CTCTCTCTCTGAACTCTGAAG
ACAGTAGTACGTACTAGGTTTGTGCAGCAGAGTTATCAGTTAGCTTTT---GGTTCTGCGAAAGTTGTGCCGCCGTGCGT
GGATGTAAATGTGGTGAAACGTTTGTAATAAACGAAATCGATAAAATTCGTCGCATCATCGGCAGCGCACACTACACAAA
ATCTCAAAGTTCAG-TTTGCACTTTCAAACAGAGACAATCATCATTCACCACAACGGGAACAGCCTACGAGCTGTGACCC
TTGTGGTGATTTACACAGCAGAATGCTACTAGAGACAGAAGAACGTAGCGCGCCTGC-----------------------
----GCATAGGCCAGTGATCAATCTACACGGCTTGCCCGTATCCTTGACCCTGAGGGGGAGCAGCGGGGTGGAA------
---GTGCCCGTACCCCTGAGCAGGAGGAGGGTACTGC---CCATATCCCTGCGCGTTTGGAGGGGGAGGGTACTGCCCGT
ATCCCTGCGCGTTCGGAGGCGGAGGGTAGTGAGCGTACGGCGCCTGACCGTACATCGGAGCAGGGTGGCCCATCGCGATG
CCGTCGGGCTTGGGCTCGCCCGCCGCTGACGGCCCCGCCACGGCCCCCGGGTATCCTGGTGCAGCAG------CCGCCGC
CGTGGCCGTGGCTGCAGCGGCGCGAAGCAGGAAGTAGGATTTGATCCCGAGCACGGT-----------------------
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---------------------GGCGATGATGCTCAGGATGGCCGCCCTCCTGAACACGCCGTCCTTGACGAAGTAGCACC
CCATGTTGACCTCGCGCGTCACGGGCGCGTTCCACGCCGCGCCCTGCACGAAGTAGATCTCCGCGATCACCGTCGCCACC
CTGCACGCGCATATATACACAGCATATTCATCCCCCGTTGAATTGGTCATCGCCGTCGTCGCCTGGATCGAATCGGAGCA
CGCGCTGAAGGAAGCTCACCATGAGAGGGCGGCGAAGACGACGCCGATGTTCCGCCTGGACGCGGAGAAGGCGGCGCCCC
GGGGCTTGCAGCAGCCGCAGCAGCGGCCGGCGGCCGAGACGGTGATCTGGGCCACCAGCAGCAGGAGCGCCGCCACCAGC
CCCAGCGCGAACGCCGGGTTGGCGGGGTACACGCACTCGGTCCTGGACATCGAGATGTCATTCGGCTGCGCGTCGCAACC
ACAAGCATCCCGATGTCAGCTCAGTTTC
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS--------------S---------S----S--S-------------S--S--------
-------------S--------------S-S-----S-------S-----------------------------S-S-S-
----------S--------------------------------------S--SS--S-S-S-S------------S----
-------------------------------------------------------------------S-S--S-----S-
-S--------------S-S-----------------------------------S---------------SS--------
-------------------S-S-------SS---------------SSSS--SS-SSS-SS-SSSSSSSSSSSSSSSSSS
SSSSSSS---S---S-----------S--S-----S-------------------S-S-SSSS-SSSSSSS---------
----------S------------------------------S--------------------------------------
-----------S------------------S-----S-S--------S-------------S------------------
----------------S------------------------------S---------------S-S--------------
--S-----------------------------------------------------------------------------
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-------------------------------------------S------------------------------------
-----S------S-S-----------------------------------------------------------------
---------------------S-----------S--------------------------------S-------------
--------------S--S-----------------SSSSSSSS-------S-S----------------S----------
----------------------------------------S-------SSS----S---S---S----------------
SS-------------------------------------------------------------SSSS-----S-------
-------------SS---------S-----------------------------------------------S-------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------S-----SSSSSS
SSS---------------------------------------------------------------S-------------
-S-----------------------------------------------------------------S-----------S
------------------------------------------------------------S-------S--S--------
-----------------------------S--------------------------------------------------
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---------------------S----------------------------------------------------------
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-------SS-----------------------SS------------------S------------------------SS-
SSSSS---------------------------------------------------------------------------
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---------------------S--------------------S------S-SS---------------------------
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>forward_159
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-----------------------------------------------------------TGCCAGGGACGTAGATGAGA-
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>reverse_1736
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-------------------------------------------------------TTGCCAAAATTGTGCTGCCG-----
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>forward_227
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-----------------------------------------------ACAACCAACTCCAGCACGAT-------------
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>reverse_2069
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--------------------------------------------------------------------CTGGAATCAGTG
TCCGTGCC------------------------------------------------------------------------
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