Multiple sequence alignment - TraesCS1D01G271700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G271700 chr1D 100.000 3130 0 0 1 3130 366004735 366007864 0.000000e+00 5781.0
1 TraesCS1D01G271700 chr1D 79.333 900 110 42 1129 1980 365996725 365997596 2.110000e-156 562.0
2 TraesCS1D01G271700 chr1D 75.325 847 123 54 1105 1925 366018700 366019486 8.370000e-86 327.0
3 TraesCS1D01G271700 chr1D 80.499 441 56 20 1129 1558 365905955 365906376 8.430000e-81 311.0
4 TraesCS1D01G271700 chr1D 82.094 363 40 10 1622 1974 365911614 365911961 1.420000e-73 287.0
5 TraesCS1D01G271700 chr1D 86.957 46 6 0 1414 1459 365846259 365846304 6.000000e-03 52.8
6 TraesCS1D01G271700 chr1B 90.408 1543 87 28 746 2250 489919552 489921071 0.000000e+00 1973.0
7 TraesCS1D01G271700 chr1B 76.932 854 116 52 1105 1925 489993201 489994006 8.080000e-111 411.0
8 TraesCS1D01G271700 chr1B 84.211 361 41 9 1622 1974 489821058 489821410 1.390000e-88 337.0
9 TraesCS1D01G271700 chr1B 83.740 369 39 11 1129 1489 489820533 489820888 2.330000e-86 329.0
10 TraesCS1D01G271700 chr1B 78.102 137 23 6 372 506 119136641 119136772 2.590000e-11 80.5
11 TraesCS1D01G271700 chr1B 88.235 51 6 0 1409 1459 489629203 489629253 9.370000e-06 62.1
12 TraesCS1D01G271700 chr1A 87.960 706 51 13 1578 2250 465139899 465140603 0.000000e+00 802.0
13 TraesCS1D01G271700 chr1A 90.217 552 31 17 715 1261 465138877 465139410 0.000000e+00 699.0
14 TraesCS1D01G271700 chr1A 80.645 868 108 33 1129 1971 465129046 465129878 4.440000e-173 617.0
15 TraesCS1D01G271700 chr1A 95.963 322 12 1 1257 1577 465139518 465139839 3.580000e-144 521.0
16 TraesCS1D01G271700 chr1A 88.000 50 6 0 1412 1461 465105549 465105598 3.370000e-05 60.2
17 TraesCS1D01G271700 chr1A 86.275 51 7 0 1409 1459 464911712 464911762 4.360000e-04 56.5
18 TraesCS1D01G271700 chr7D 89.150 553 57 3 2246 2797 84416483 84415933 0.000000e+00 686.0
19 TraesCS1D01G271700 chr7D 87.114 551 70 1 2249 2798 46598834 46598284 9.530000e-175 623.0
20 TraesCS1D01G271700 chr7D 89.157 332 36 0 2796 3127 583052558 583052889 6.250000e-112 414.0
21 TraesCS1D01G271700 chr7D 74.121 313 53 19 2 294 58846624 58846320 1.540000e-18 104.0
22 TraesCS1D01G271700 chr3A 87.993 558 53 12 2247 2798 745528812 745529361 0.000000e+00 647.0
23 TraesCS1D01G271700 chr3A 87.978 549 59 6 2247 2793 603922096 603921553 2.630000e-180 641.0
24 TraesCS1D01G271700 chr3B 87.410 556 65 5 2246 2798 168275667 168276220 4.400000e-178 634.0
25 TraesCS1D01G271700 chr3B 87.050 556 64 5 2249 2798 251785414 251784861 3.430000e-174 621.0
26 TraesCS1D01G271700 chr3B 73.566 401 55 36 1 375 756133987 756134362 4.270000e-19 106.0
27 TraesCS1D01G271700 chr2A 87.477 551 62 6 2245 2794 657061173 657060629 2.050000e-176 628.0
28 TraesCS1D01G271700 chr2A 87.798 336 39 2 2796 3130 678155033 678154699 2.930000e-105 392.0
29 TraesCS1D01G271700 chr6B 87.184 554 65 6 2246 2798 37667162 37666614 2.650000e-175 625.0
30 TraesCS1D01G271700 chr6B 75.081 618 97 37 24 625 487790896 487790320 5.220000e-58 235.0
31 TraesCS1D01G271700 chr4D 87.363 546 64 2 2247 2792 418386665 418386125 3.430000e-174 621.0
32 TraesCS1D01G271700 chr4D 79.747 158 16 14 1 153 386496595 386496449 1.990000e-17 100.0
33 TraesCS1D01G271700 chr5D 90.746 335 31 0 2796 3130 483724262 483724596 6.160000e-122 448.0
34 TraesCS1D01G271700 chr5D 77.667 403 65 18 181 574 472622911 472623297 4.060000e-54 222.0
35 TraesCS1D01G271700 chr5B 90.719 334 31 0 2797 3130 91898591 91898924 2.210000e-121 446.0
36 TraesCS1D01G271700 chr5B 77.805 401 67 16 181 574 580069554 580069939 8.730000e-56 228.0
37 TraesCS1D01G271700 chr5B 82.178 202 30 5 382 579 529535208 529535407 5.370000e-38 169.0
38 TraesCS1D01G271700 chr5B 79.286 140 22 6 5 143 671352423 671352290 1.200000e-14 91.6
39 TraesCS1D01G271700 chr3D 89.521 334 33 2 2798 3130 154599398 154599066 3.730000e-114 422.0
40 TraesCS1D01G271700 chr3D 88.060 335 37 1 2796 3130 352779746 352779415 8.140000e-106 394.0
41 TraesCS1D01G271700 chr6D 88.988 336 35 2 2796 3130 3995415 3995081 6.250000e-112 414.0
42 TraesCS1D01G271700 chr4A 88.095 336 39 1 2796 3130 597322984 597323319 6.290000e-107 398.0
43 TraesCS1D01G271700 chrUn 88.024 334 40 0 2796 3129 82557399 82557066 2.260000e-106 396.0
44 TraesCS1D01G271700 chr2B 79.651 344 38 25 223 551 442084195 442084521 5.260000e-53 219.0
45 TraesCS1D01G271700 chr2B 89.412 85 8 1 680 763 442084827 442084911 4.270000e-19 106.0
46 TraesCS1D01G271700 chr2B 80.508 118 20 1 642 756 92997266 92997149 1.550000e-13 87.9
47 TraesCS1D01G271700 chr4B 84.444 135 17 4 631 764 634462004 634461873 2.530000e-26 130.0
48 TraesCS1D01G271700 chr4B 84.444 135 17 4 631 764 634980099 634980230 2.530000e-26 130.0
49 TraesCS1D01G271700 chr5A 85.950 121 15 2 644 764 674575329 674575447 9.110000e-26 128.0
50 TraesCS1D01G271700 chr5A 89.610 77 7 1 672 747 29165750 29165674 2.570000e-16 97.1
51 TraesCS1D01G271700 chr7B 75.159 314 51 22 1 308 43271665 43271957 4.240000e-24 122.0
52 TraesCS1D01G271700 chr7B 74.684 316 50 25 1 308 43298622 43298915 2.550000e-21 113.0
53 TraesCS1D01G271700 chr7B 80.000 135 19 7 9 141 36505152 36505280 3.320000e-15 93.5
54 TraesCS1D01G271700 chr2D 83.200 125 15 6 2 124 637979918 637979798 3.300000e-20 110.0
55 TraesCS1D01G271700 chr2D 93.023 43 3 0 668 710 615567032 615567074 2.610000e-06 63.9
56 TraesCS1D01G271700 chr7A 82.540 126 14 6 1 124 89070662 89070781 1.540000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G271700 chr1D 366004735 366007864 3129 False 5781 5781 100.0000 1 3130 1 chr1D.!!$F5 3129
1 TraesCS1D01G271700 chr1D 365996725 365997596 871 False 562 562 79.3330 1129 1980 1 chr1D.!!$F4 851
2 TraesCS1D01G271700 chr1D 366018700 366019486 786 False 327 327 75.3250 1105 1925 1 chr1D.!!$F6 820
3 TraesCS1D01G271700 chr1B 489919552 489921071 1519 False 1973 1973 90.4080 746 2250 1 chr1B.!!$F3 1504
4 TraesCS1D01G271700 chr1B 489993201 489994006 805 False 411 411 76.9320 1105 1925 1 chr1B.!!$F4 820
5 TraesCS1D01G271700 chr1B 489820533 489821410 877 False 333 337 83.9755 1129 1974 2 chr1B.!!$F5 845
6 TraesCS1D01G271700 chr1A 465138877 465140603 1726 False 674 802 91.3800 715 2250 3 chr1A.!!$F4 1535
7 TraesCS1D01G271700 chr1A 465129046 465129878 832 False 617 617 80.6450 1129 1971 1 chr1A.!!$F3 842
8 TraesCS1D01G271700 chr7D 84415933 84416483 550 True 686 686 89.1500 2246 2797 1 chr7D.!!$R3 551
9 TraesCS1D01G271700 chr7D 46598284 46598834 550 True 623 623 87.1140 2249 2798 1 chr7D.!!$R1 549
10 TraesCS1D01G271700 chr3A 745528812 745529361 549 False 647 647 87.9930 2247 2798 1 chr3A.!!$F1 551
11 TraesCS1D01G271700 chr3A 603921553 603922096 543 True 641 641 87.9780 2247 2793 1 chr3A.!!$R1 546
12 TraesCS1D01G271700 chr3B 168275667 168276220 553 False 634 634 87.4100 2246 2798 1 chr3B.!!$F1 552
13 TraesCS1D01G271700 chr3B 251784861 251785414 553 True 621 621 87.0500 2249 2798 1 chr3B.!!$R1 549
14 TraesCS1D01G271700 chr2A 657060629 657061173 544 True 628 628 87.4770 2245 2794 1 chr2A.!!$R1 549
15 TraesCS1D01G271700 chr6B 37666614 37667162 548 True 625 625 87.1840 2246 2798 1 chr6B.!!$R1 552
16 TraesCS1D01G271700 chr6B 487790320 487790896 576 True 235 235 75.0810 24 625 1 chr6B.!!$R2 601
17 TraesCS1D01G271700 chr4D 418386125 418386665 540 True 621 621 87.3630 2247 2792 1 chr4D.!!$R2 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 1003 0.100682 ACTAGTAGCATGCCGACGTG 59.899 55.0 15.66 12.8 35.78 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2928 3222 0.102481 GGCTTGGAGCTCGATTACGA 59.898 55.0 7.83 0.0 45.93 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.655930 AGCATCGGTATTACCCTTTAAGAAA 58.344 36.000 7.29 0.00 33.75 2.52
41 42 7.778382 AGCATCGGTATTACCCTTTAAGAAAAT 59.222 33.333 7.29 0.00 33.75 1.82
42 43 7.860872 GCATCGGTATTACCCTTTAAGAAAATG 59.139 37.037 7.29 0.00 33.75 2.32
114 115 9.113838 TCTAAGAAAGAATGAATTAGTGGCATC 57.886 33.333 0.00 0.00 0.00 3.91
116 117 5.297776 AGAAAGAATGAATTAGTGGCATCGG 59.702 40.000 0.00 0.00 0.00 4.18
125 126 0.763035 AGTGGCATCGGTATTACCCC 59.237 55.000 7.29 3.43 33.75 4.95
134 135 5.824097 GCATCGGTATTACCCCTTAAGAAAA 59.176 40.000 3.36 0.00 33.75 2.29
135 136 6.489022 GCATCGGTATTACCCCTTAAGAAAAT 59.511 38.462 3.36 1.06 33.75 1.82
136 137 7.521585 GCATCGGTATTACCCCTTAAGAAAATG 60.522 40.741 3.36 0.00 33.75 2.32
137 138 7.197901 TCGGTATTACCCCTTAAGAAAATGA 57.802 36.000 3.36 0.00 33.75 2.57
262 263 5.750352 AAAGGAATGATTGAGTGGCATTT 57.250 34.783 0.00 0.00 32.80 2.32
263 264 4.730949 AGGAATGATTGAGTGGCATTTG 57.269 40.909 0.00 0.00 32.80 2.32
267 268 6.381994 AGGAATGATTGAGTGGCATTTGTATT 59.618 34.615 0.00 0.00 32.80 1.89
279 280 8.739972 AGTGGCATTTGTATTACCTTAAAGAAG 58.260 33.333 0.00 0.00 0.00 2.85
349 352 6.278363 AGAATGAATGAATTAGTGGCATTGC 58.722 36.000 0.00 0.00 32.80 3.56
357 360 5.534654 TGAATTAGTGGCATTGCTATTACCC 59.465 40.000 8.82 0.00 0.00 3.69
358 361 4.788925 TTAGTGGCATTGCTATTACCCT 57.211 40.909 8.82 0.00 0.00 4.34
361 364 3.701040 AGTGGCATTGCTATTACCCTTTG 59.299 43.478 8.82 0.00 0.00 2.77
362 365 3.699038 GTGGCATTGCTATTACCCTTTGA 59.301 43.478 8.82 0.00 0.00 2.69
363 366 3.953612 TGGCATTGCTATTACCCTTTGAG 59.046 43.478 8.82 0.00 0.00 3.02
364 367 4.207165 GGCATTGCTATTACCCTTTGAGA 58.793 43.478 8.82 0.00 0.00 3.27
365 368 4.644685 GGCATTGCTATTACCCTTTGAGAA 59.355 41.667 8.82 0.00 0.00 2.87
366 369 5.221126 GGCATTGCTATTACCCTTTGAGAAG 60.221 44.000 8.82 0.00 0.00 2.85
367 370 5.590259 GCATTGCTATTACCCTTTGAGAAGA 59.410 40.000 0.16 0.00 34.71 2.87
368 371 6.095440 GCATTGCTATTACCCTTTGAGAAGAA 59.905 38.462 0.16 0.00 34.71 2.52
369 372 7.362920 GCATTGCTATTACCCTTTGAGAAGAAA 60.363 37.037 0.16 0.00 34.71 2.52
370 373 7.687941 TTGCTATTACCCTTTGAGAAGAAAG 57.312 36.000 0.00 0.00 34.71 2.62
373 376 7.942341 TGCTATTACCCTTTGAGAAGAAAGAAA 59.058 33.333 0.00 0.00 35.30 2.52
404 407 6.365789 CACACACAACTTTTCACTGAAATTGT 59.634 34.615 14.02 14.02 36.09 2.71
407 410 7.754924 CACACAACTTTTCACTGAAATTGTACT 59.245 33.333 17.34 8.01 34.57 2.73
408 411 8.303876 ACACAACTTTTCACTGAAATTGTACTT 58.696 29.630 17.34 7.56 34.57 2.24
409 412 9.139174 CACAACTTTTCACTGAAATTGTACTTT 57.861 29.630 17.34 0.00 34.57 2.66
410 413 9.705290 ACAACTTTTCACTGAAATTGTACTTTT 57.295 25.926 16.67 0.00 34.84 2.27
486 489 7.770201 TGCAATATTTGTGTGCATACAGTTAT 58.230 30.769 16.17 13.62 43.09 1.89
491 494 9.830975 ATATTTGTGTGCATACAGTTATACTCA 57.169 29.630 16.17 0.00 37.52 3.41
501 504 5.099042 ACAGTTATACTCACCCAACATCC 57.901 43.478 0.00 0.00 0.00 3.51
506 509 2.292828 ACTCACCCAACATCCCAAAG 57.707 50.000 0.00 0.00 0.00 2.77
510 513 4.202441 CTCACCCAACATCCCAAAGATAG 58.798 47.826 0.00 0.00 32.37 2.08
511 514 3.849574 TCACCCAACATCCCAAAGATAGA 59.150 43.478 0.00 0.00 32.37 1.98
519 522 6.824305 ACATCCCAAAGATAGACACAAAAG 57.176 37.500 0.00 0.00 32.37 2.27
522 525 7.505585 ACATCCCAAAGATAGACACAAAAGAAA 59.494 33.333 0.00 0.00 32.37 2.52
523 526 8.526147 CATCCCAAAGATAGACACAAAAGAAAT 58.474 33.333 0.00 0.00 32.37 2.17
524 527 9.753674 ATCCCAAAGATAGACACAAAAGAAATA 57.246 29.630 0.00 0.00 31.60 1.40
525 528 9.231297 TCCCAAAGATAGACACAAAAGAAATAG 57.769 33.333 0.00 0.00 0.00 1.73
526 529 9.231297 CCCAAAGATAGACACAAAAGAAATAGA 57.769 33.333 0.00 0.00 0.00 1.98
602 617 2.220653 TGAAGAAAGGGGAATGGCTG 57.779 50.000 0.00 0.00 0.00 4.85
603 618 1.272648 TGAAGAAAGGGGAATGGCTGG 60.273 52.381 0.00 0.00 0.00 4.85
613 628 3.925630 AATGGCTGGGTCGCACCTG 62.926 63.158 5.48 1.75 38.64 4.00
619 634 0.744414 CTGGGTCGCACCTGGTAATG 60.744 60.000 0.00 0.00 38.64 1.90
625 640 1.376609 CGCACCTGGTAATGGGCTTC 61.377 60.000 0.00 0.00 0.00 3.86
626 641 0.323360 GCACCTGGTAATGGGCTTCA 60.323 55.000 0.00 0.00 0.00 3.02
627 642 1.686115 GCACCTGGTAATGGGCTTCAT 60.686 52.381 0.00 0.00 37.79 2.57
628 643 2.301346 CACCTGGTAATGGGCTTCATC 58.699 52.381 0.00 0.00 34.44 2.92
629 644 2.092212 CACCTGGTAATGGGCTTCATCT 60.092 50.000 0.00 0.00 34.44 2.90
630 645 3.136443 CACCTGGTAATGGGCTTCATCTA 59.864 47.826 0.00 0.00 34.44 1.98
631 646 3.983410 ACCTGGTAATGGGCTTCATCTAT 59.017 43.478 0.00 0.00 34.44 1.98
632 647 4.416848 ACCTGGTAATGGGCTTCATCTATT 59.583 41.667 0.00 0.00 34.44 1.73
633 648 5.103515 ACCTGGTAATGGGCTTCATCTATTT 60.104 40.000 0.00 0.00 34.44 1.40
634 649 6.102615 ACCTGGTAATGGGCTTCATCTATTTA 59.897 38.462 0.00 0.00 34.44 1.40
635 650 7.004086 CCTGGTAATGGGCTTCATCTATTTAA 58.996 38.462 0.00 0.00 34.44 1.52
636 651 7.040409 CCTGGTAATGGGCTTCATCTATTTAAC 60.040 40.741 0.00 0.00 34.44 2.01
637 652 7.350382 TGGTAATGGGCTTCATCTATTTAACA 58.650 34.615 0.00 0.00 34.44 2.41
638 653 7.284489 TGGTAATGGGCTTCATCTATTTAACAC 59.716 37.037 0.00 0.00 34.44 3.32
639 654 7.284489 GGTAATGGGCTTCATCTATTTAACACA 59.716 37.037 0.00 0.00 34.44 3.72
640 655 7.716799 AATGGGCTTCATCTATTTAACACAA 57.283 32.000 0.00 0.00 34.44 3.33
641 656 6.509418 TGGGCTTCATCTATTTAACACAAC 57.491 37.500 0.00 0.00 0.00 3.32
642 657 5.417580 TGGGCTTCATCTATTTAACACAACC 59.582 40.000 0.00 0.00 0.00 3.77
643 658 5.417580 GGGCTTCATCTATTTAACACAACCA 59.582 40.000 0.00 0.00 0.00 3.67
644 659 6.071616 GGGCTTCATCTATTTAACACAACCAA 60.072 38.462 0.00 0.00 0.00 3.67
645 660 7.375053 GGCTTCATCTATTTAACACAACCAAA 58.625 34.615 0.00 0.00 0.00 3.28
646 661 7.328493 GGCTTCATCTATTTAACACAACCAAAC 59.672 37.037 0.00 0.00 0.00 2.93
647 662 7.865385 GCTTCATCTATTTAACACAACCAAACA 59.135 33.333 0.00 0.00 0.00 2.83
648 663 9.180678 CTTCATCTATTTAACACAACCAAACAC 57.819 33.333 0.00 0.00 0.00 3.32
649 664 7.653647 TCATCTATTTAACACAACCAAACACC 58.346 34.615 0.00 0.00 0.00 4.16
650 665 7.504238 TCATCTATTTAACACAACCAAACACCT 59.496 33.333 0.00 0.00 0.00 4.00
651 666 7.648039 TCTATTTAACACAACCAAACACCTT 57.352 32.000 0.00 0.00 0.00 3.50
652 667 8.749026 TCTATTTAACACAACCAAACACCTTA 57.251 30.769 0.00 0.00 0.00 2.69
653 668 8.842280 TCTATTTAACACAACCAAACACCTTAG 58.158 33.333 0.00 0.00 0.00 2.18
654 669 7.648039 ATTTAACACAACCAAACACCTTAGA 57.352 32.000 0.00 0.00 0.00 2.10
655 670 6.687081 TTAACACAACCAAACACCTTAGAG 57.313 37.500 0.00 0.00 0.00 2.43
656 671 4.497291 ACACAACCAAACACCTTAGAGA 57.503 40.909 0.00 0.00 0.00 3.10
657 672 4.850680 ACACAACCAAACACCTTAGAGAA 58.149 39.130 0.00 0.00 0.00 2.87
658 673 4.638865 ACACAACCAAACACCTTAGAGAAC 59.361 41.667 0.00 0.00 0.00 3.01
659 674 4.638421 CACAACCAAACACCTTAGAGAACA 59.362 41.667 0.00 0.00 0.00 3.18
660 675 5.124776 CACAACCAAACACCTTAGAGAACAA 59.875 40.000 0.00 0.00 0.00 2.83
661 676 5.712917 ACAACCAAACACCTTAGAGAACAAA 59.287 36.000 0.00 0.00 0.00 2.83
662 677 5.830000 ACCAAACACCTTAGAGAACAAAC 57.170 39.130 0.00 0.00 0.00 2.93
663 678 4.643334 ACCAAACACCTTAGAGAACAAACC 59.357 41.667 0.00 0.00 0.00 3.27
664 679 4.642885 CCAAACACCTTAGAGAACAAACCA 59.357 41.667 0.00 0.00 0.00 3.67
665 680 5.221048 CCAAACACCTTAGAGAACAAACCAG 60.221 44.000 0.00 0.00 0.00 4.00
666 681 5.367945 AACACCTTAGAGAACAAACCAGA 57.632 39.130 0.00 0.00 0.00 3.86
667 682 5.367945 ACACCTTAGAGAACAAACCAGAA 57.632 39.130 0.00 0.00 0.00 3.02
668 683 5.751586 ACACCTTAGAGAACAAACCAGAAA 58.248 37.500 0.00 0.00 0.00 2.52
669 684 6.184789 ACACCTTAGAGAACAAACCAGAAAA 58.815 36.000 0.00 0.00 0.00 2.29
670 685 6.661805 ACACCTTAGAGAACAAACCAGAAAAA 59.338 34.615 0.00 0.00 0.00 1.94
693 708 6.991485 AAAATAACAGCACGAATCACAAAG 57.009 33.333 0.00 0.00 0.00 2.77
694 709 2.405892 AACAGCACGAATCACAAAGC 57.594 45.000 0.00 0.00 0.00 3.51
695 710 1.308047 ACAGCACGAATCACAAAGCA 58.692 45.000 0.00 0.00 0.00 3.91
696 711 1.675483 ACAGCACGAATCACAAAGCAA 59.325 42.857 0.00 0.00 0.00 3.91
697 712 2.287188 ACAGCACGAATCACAAAGCAAG 60.287 45.455 0.00 0.00 0.00 4.01
698 713 2.031769 CAGCACGAATCACAAAGCAAGA 60.032 45.455 0.00 0.00 0.00 3.02
699 714 2.816087 AGCACGAATCACAAAGCAAGAT 59.184 40.909 0.00 0.00 0.00 2.40
700 715 3.120060 AGCACGAATCACAAAGCAAGATC 60.120 43.478 0.00 0.00 0.00 2.75
701 716 3.365264 GCACGAATCACAAAGCAAGATCA 60.365 43.478 0.00 0.00 0.00 2.92
702 717 4.786507 CACGAATCACAAAGCAAGATCAA 58.213 39.130 0.00 0.00 0.00 2.57
703 718 4.614284 CACGAATCACAAAGCAAGATCAAC 59.386 41.667 0.00 0.00 0.00 3.18
704 719 3.842428 CGAATCACAAAGCAAGATCAACG 59.158 43.478 0.00 0.00 0.00 4.10
705 720 3.837213 ATCACAAAGCAAGATCAACGG 57.163 42.857 0.00 0.00 0.00 4.44
706 721 1.266718 TCACAAAGCAAGATCAACGGC 59.733 47.619 0.00 0.00 0.00 5.68
707 722 1.001487 CACAAAGCAAGATCAACGGCA 60.001 47.619 0.00 0.00 0.00 5.69
708 723 1.001378 ACAAAGCAAGATCAACGGCAC 60.001 47.619 0.00 0.00 0.00 5.01
709 724 1.001487 CAAAGCAAGATCAACGGCACA 60.001 47.619 0.00 0.00 0.00 4.57
710 725 0.593128 AAGCAAGATCAACGGCACAC 59.407 50.000 0.00 0.00 0.00 3.82
711 726 0.534877 AGCAAGATCAACGGCACACA 60.535 50.000 0.00 0.00 0.00 3.72
712 727 0.310543 GCAAGATCAACGGCACACAA 59.689 50.000 0.00 0.00 0.00 3.33
713 728 1.268999 GCAAGATCAACGGCACACAAA 60.269 47.619 0.00 0.00 0.00 2.83
716 731 4.050553 CAAGATCAACGGCACACAAAATT 58.949 39.130 0.00 0.00 0.00 1.82
726 741 2.100584 GCACACAAAATTGACTGACCCA 59.899 45.455 0.00 0.00 0.00 4.51
727 742 3.430098 GCACACAAAATTGACTGACCCAA 60.430 43.478 0.00 0.00 0.00 4.12
743 758 7.222872 ACTGACCCAAAATAAAATTTCATGCA 58.777 30.769 0.00 0.00 0.00 3.96
808 827 1.584175 CCAGCAGCTGAGTCATCATC 58.416 55.000 24.90 0.00 34.12 2.92
814 833 1.139256 AGCTGAGTCATCATCAGGCAG 59.861 52.381 5.22 0.00 43.61 4.85
838 857 3.181471 CCAGGCTTGTCGTTAGATGATCT 60.181 47.826 0.00 0.00 0.00 2.75
839 858 4.437239 CAGGCTTGTCGTTAGATGATCTT 58.563 43.478 0.00 0.00 0.00 2.40
866 885 4.177026 GGATACGACTATGCATGATGGTC 58.823 47.826 10.16 10.93 38.81 4.02
924 943 4.838665 ACAATGTTTGTTCGTTTGCTTG 57.161 36.364 0.00 0.00 42.22 4.01
953 973 0.736325 AGTACGCGTGATTGCACCTC 60.736 55.000 24.59 0.00 42.09 3.85
968 988 2.325761 CACCTCGTCGTGGAAAACTAG 58.674 52.381 19.68 0.00 0.00 2.57
972 992 3.169733 CTCGTCGTGGAAAACTAGTAGC 58.830 50.000 0.00 0.00 0.00 3.58
973 993 2.553602 TCGTCGTGGAAAACTAGTAGCA 59.446 45.455 0.00 0.00 0.00 3.49
974 994 3.192001 TCGTCGTGGAAAACTAGTAGCAT 59.808 43.478 0.00 0.00 0.00 3.79
975 995 3.303495 CGTCGTGGAAAACTAGTAGCATG 59.697 47.826 0.00 0.00 0.00 4.06
976 996 3.062234 GTCGTGGAAAACTAGTAGCATGC 59.938 47.826 10.51 10.51 0.00 4.06
977 997 2.351726 CGTGGAAAACTAGTAGCATGCC 59.648 50.000 15.66 0.00 0.00 4.40
978 998 2.351726 GTGGAAAACTAGTAGCATGCCG 59.648 50.000 15.66 0.36 0.00 5.69
979 999 2.235155 TGGAAAACTAGTAGCATGCCGA 59.765 45.455 15.66 0.00 0.00 5.54
980 1000 2.608090 GGAAAACTAGTAGCATGCCGAC 59.392 50.000 15.66 13.24 0.00 4.79
981 1001 1.922570 AAACTAGTAGCATGCCGACG 58.077 50.000 15.66 4.03 0.00 5.12
982 1002 0.815734 AACTAGTAGCATGCCGACGT 59.184 50.000 15.66 4.67 0.00 4.34
983 1003 0.100682 ACTAGTAGCATGCCGACGTG 59.899 55.000 15.66 12.80 35.78 4.49
1001 1021 4.919653 CACAGCGTGCTCCATACT 57.080 55.556 0.00 0.00 0.00 2.12
1003 1023 2.515926 CACAGCGTGCTCCATACTAT 57.484 50.000 0.00 0.00 0.00 2.12
1004 1024 3.643159 CACAGCGTGCTCCATACTATA 57.357 47.619 0.00 0.00 0.00 1.31
1005 1025 4.179926 CACAGCGTGCTCCATACTATAT 57.820 45.455 0.00 0.00 0.00 0.86
1025 1045 1.160137 AAGCATCAGAACACGGCTTC 58.840 50.000 0.00 0.00 40.52 3.86
1026 1046 0.674895 AGCATCAGAACACGGCTTCC 60.675 55.000 0.00 0.00 0.00 3.46
1027 1047 0.955428 GCATCAGAACACGGCTTCCA 60.955 55.000 0.00 0.00 0.00 3.53
1032 1052 2.499693 TCAGAACACGGCTTCCATATCA 59.500 45.455 0.00 0.00 0.00 2.15
1040 1062 3.328931 ACGGCTTCCATATCAATCCATCT 59.671 43.478 0.00 0.00 0.00 2.90
1053 1075 2.185350 CATCTCACGGCGGCTTCT 59.815 61.111 13.24 0.00 0.00 2.85
1062 1084 0.248907 CGGCGGCTTCTCGATCTTAA 60.249 55.000 7.61 0.00 0.00 1.85
1064 1086 2.062519 GGCGGCTTCTCGATCTTAATC 58.937 52.381 0.00 0.00 0.00 1.75
1069 1091 4.856487 CGGCTTCTCGATCTTAATCATCTC 59.144 45.833 0.00 0.00 31.76 2.75
1070 1092 4.856487 GGCTTCTCGATCTTAATCATCTCG 59.144 45.833 0.00 0.00 31.76 4.04
1071 1093 5.335269 GGCTTCTCGATCTTAATCATCTCGA 60.335 44.000 0.00 0.00 36.92 4.04
1072 1094 6.321717 GCTTCTCGATCTTAATCATCTCGAT 58.678 40.000 0.00 0.00 37.68 3.59
1073 1095 6.468956 GCTTCTCGATCTTAATCATCTCGATC 59.531 42.308 0.00 0.00 37.68 3.69
1184 1206 0.769873 TGGTAGCGGTTTTTGGGGTA 59.230 50.000 0.00 0.00 0.00 3.69
1243 1273 2.422832 AGCTCACGGTAAGTACACTAGC 59.577 50.000 0.00 0.00 0.00 3.42
1263 1407 6.993902 ACTAGCAGTCTGGTAATCTAGTAGTC 59.006 42.308 12.62 0.00 36.10 2.59
1268 1412 6.424509 CAGTCTGGTAATCTAGTAGTCGTAGG 59.575 46.154 0.00 0.00 0.00 3.18
1505 1663 1.349026 CAAGAGCTCCAGGTCCAAGAA 59.651 52.381 10.93 0.00 43.11 2.52
1507 1665 1.203237 AGAGCTCCAGGTCCAAGAAGA 60.203 52.381 10.93 0.00 43.11 2.87
1516 1674 1.672881 GGTCCAAGAAGATCATTGGCG 59.327 52.381 15.80 0.00 44.67 5.69
1855 2105 1.288508 TACTACCGCTACCCTGGGGA 61.289 60.000 18.88 7.83 41.89 4.81
1939 2189 2.320587 GCCGCTCCACAACACTCAG 61.321 63.158 0.00 0.00 0.00 3.35
1956 2208 0.737715 CAGAAGCTGTGTAGGGCGTC 60.738 60.000 0.00 0.00 37.25 5.19
1971 2223 0.533032 GCGTCCTCTTGCTTCTACCT 59.467 55.000 0.00 0.00 0.00 3.08
2012 2272 1.136336 GCTTTAGTGTTGCTTCCGTCG 60.136 52.381 0.00 0.00 0.00 5.12
2020 2280 0.032952 TTGCTTCCGTCGTAACTGCT 59.967 50.000 0.00 0.00 0.00 4.24
2106 2381 3.631145 TTGAGCTTTCAGATTGTGCAC 57.369 42.857 10.75 10.75 0.00 4.57
2123 2398 0.531974 CACTGTGCGGTACCAACACT 60.532 55.000 26.76 11.93 35.33 3.55
2132 2411 6.183360 TGTGCGGTACCAACACTATCATATTA 60.183 38.462 26.76 8.52 35.33 0.98
2172 2452 8.792538 CGCTATTCTTCAGTCATTTGATTTTTC 58.207 33.333 0.00 0.00 0.00 2.29
2221 2501 5.931724 GGTTTTGCTAAACATTATGTGCCTT 59.068 36.000 22.19 0.00 44.37 4.35
2228 2508 9.717942 TGCTAAACATTATGTGCCTTAAATTTT 57.282 25.926 0.00 0.00 0.00 1.82
2236 2516 8.514136 TTATGTGCCTTAAATTTTTCTTGACG 57.486 30.769 0.00 0.00 0.00 4.35
2239 2519 3.363724 GCCTTAAATTTTTCTTGACGCCG 59.636 43.478 0.00 0.00 0.00 6.46
2240 2520 4.542735 CCTTAAATTTTTCTTGACGCCGT 58.457 39.130 0.00 0.00 0.00 5.68
2375 2655 2.159240 GCATCCGCGTATCTCATATCCA 60.159 50.000 4.92 0.00 0.00 3.41
2485 2766 1.493950 GATCGGCTGCAATCGGACAG 61.494 60.000 0.50 0.00 36.96 3.51
2526 2807 5.989477 TCCAAAAGATCATAGTTCGTCCAT 58.011 37.500 0.00 0.00 0.00 3.41
2701 2993 2.048503 GGTACAACTGTCGCCGCT 60.049 61.111 0.00 0.00 0.00 5.52
2728 3020 0.959372 TCGGAGTTGGAGAGGACGAC 60.959 60.000 0.00 0.00 0.00 4.34
2729 3021 1.241990 CGGAGTTGGAGAGGACGACA 61.242 60.000 0.00 0.00 0.00 4.35
2798 3092 4.436998 ACCCGAGCCTTCTTCGCG 62.437 66.667 0.00 0.00 0.00 5.87
2822 3116 3.775654 GAGGGTCCAGCTCCGGTG 61.776 72.222 0.00 0.00 0.00 4.94
2823 3117 4.640690 AGGGTCCAGCTCCGGTGT 62.641 66.667 0.00 0.00 0.00 4.16
2824 3118 4.083862 GGGTCCAGCTCCGGTGTC 62.084 72.222 0.00 0.00 0.00 3.67
2825 3119 4.083862 GGTCCAGCTCCGGTGTCC 62.084 72.222 0.00 0.00 0.00 4.02
2826 3120 3.311110 GTCCAGCTCCGGTGTCCA 61.311 66.667 0.00 0.00 0.00 4.02
2827 3121 3.311110 TCCAGCTCCGGTGTCCAC 61.311 66.667 0.00 0.00 0.00 4.02
2828 3122 4.742201 CCAGCTCCGGTGTCCACG 62.742 72.222 0.00 0.00 0.00 4.94
2831 3125 3.755628 GCTCCGGTGTCCACGCTA 61.756 66.667 0.00 0.00 0.00 4.26
2832 3126 2.181021 CTCCGGTGTCCACGCTAC 59.819 66.667 0.00 0.00 0.00 3.58
2833 3127 3.678717 CTCCGGTGTCCACGCTACG 62.679 68.421 0.00 0.00 0.00 3.51
2863 3157 4.357947 GTGTGGCGACGCTCCAGA 62.358 66.667 20.77 5.78 42.82 3.86
2864 3158 3.381983 TGTGGCGACGCTCCAGAT 61.382 61.111 20.77 0.00 42.82 2.90
2865 3159 2.583593 GTGGCGACGCTCCAGATC 60.584 66.667 20.77 1.05 38.02 2.75
2866 3160 3.838271 TGGCGACGCTCCAGATCC 61.838 66.667 20.77 0.24 0.00 3.36
2867 3161 4.933064 GGCGACGCTCCAGATCCG 62.933 72.222 20.77 0.00 0.00 4.18
2868 3162 4.933064 GCGACGCTCCAGATCCGG 62.933 72.222 13.73 0.00 0.00 5.14
2869 3163 3.209812 CGACGCTCCAGATCCGGA 61.210 66.667 6.61 6.61 0.00 5.14
2874 3168 2.420890 CTCCAGATCCGGAGCTGC 59.579 66.667 38.30 15.30 45.95 5.25
2875 3169 3.157252 TCCAGATCCGGAGCTGCC 61.157 66.667 38.30 12.56 43.03 4.85
2876 3170 3.473647 CCAGATCCGGAGCTGCCA 61.474 66.667 38.30 0.87 43.03 4.92
2877 3171 2.815945 CCAGATCCGGAGCTGCCAT 61.816 63.158 38.30 8.52 43.03 4.40
2878 3172 1.301558 CAGATCCGGAGCTGCCATC 60.302 63.158 34.56 13.78 38.05 3.51
2879 3173 2.356793 GATCCGGAGCTGCCATCG 60.357 66.667 13.71 0.00 35.94 3.84
2880 3174 3.873026 GATCCGGAGCTGCCATCGG 62.873 68.421 13.71 16.30 43.42 4.18
2882 3176 3.536917 CCGGAGCTGCCATCGGTA 61.537 66.667 14.82 0.00 37.92 4.02
2883 3177 2.737180 CGGAGCTGCCATCGGTAT 59.263 61.111 0.00 0.00 35.94 2.73
2884 3178 1.373497 CGGAGCTGCCATCGGTATC 60.373 63.158 0.00 0.00 35.94 2.24
2885 3179 1.004440 GGAGCTGCCATCGGTATCC 60.004 63.158 0.00 0.00 36.34 2.59
2886 3180 1.748403 GAGCTGCCATCGGTATCCA 59.252 57.895 0.00 0.00 0.00 3.41
2887 3181 0.601311 GAGCTGCCATCGGTATCCAC 60.601 60.000 0.00 0.00 0.00 4.02
2888 3182 1.598130 GCTGCCATCGGTATCCACC 60.598 63.158 0.00 0.00 41.93 4.61
2889 3183 2.044806 GCTGCCATCGGTATCCACCT 62.045 60.000 0.00 0.00 43.33 4.00
2890 3184 0.469917 CTGCCATCGGTATCCACCTT 59.530 55.000 0.00 0.00 43.33 3.50
2891 3185 0.180171 TGCCATCGGTATCCACCTTG 59.820 55.000 0.00 0.00 43.33 3.61
2892 3186 0.535102 GCCATCGGTATCCACCTTGG 60.535 60.000 7.81 7.81 43.60 3.61
2900 3194 3.319198 TCCACCTTGGACCGCTCC 61.319 66.667 0.00 0.00 42.67 4.70
2901 3195 3.636231 CCACCTTGGACCGCTCCA 61.636 66.667 0.00 0.00 45.68 3.86
2922 3216 3.790437 CACTGCGGAGGGCCATCT 61.790 66.667 18.35 0.00 42.61 2.90
2923 3217 3.474570 ACTGCGGAGGGCCATCTC 61.475 66.667 18.35 9.00 42.61 2.75
2929 3223 3.884318 GAGGGCCATCTCCTCCTC 58.116 66.667 10.91 0.00 43.71 3.71
2930 3224 2.123077 AGGGCCATCTCCTCCTCG 60.123 66.667 6.18 0.00 0.00 4.63
2931 3225 2.444895 GGGCCATCTCCTCCTCGT 60.445 66.667 4.39 0.00 0.00 4.18
2932 3226 1.152525 GGGCCATCTCCTCCTCGTA 60.153 63.158 4.39 0.00 0.00 3.43
2933 3227 0.759436 GGGCCATCTCCTCCTCGTAA 60.759 60.000 4.39 0.00 0.00 3.18
2934 3228 1.343069 GGCCATCTCCTCCTCGTAAT 58.657 55.000 0.00 0.00 0.00 1.89
2935 3229 1.273886 GGCCATCTCCTCCTCGTAATC 59.726 57.143 0.00 0.00 0.00 1.75
2936 3230 1.068194 GCCATCTCCTCCTCGTAATCG 60.068 57.143 0.00 0.00 38.55 3.34
2937 3231 2.505405 CCATCTCCTCCTCGTAATCGA 58.495 52.381 0.00 0.00 44.12 3.59
2946 3240 3.642901 TCGTAATCGAGCTCCAAGC 57.357 52.632 8.47 0.00 41.35 4.01
2947 3241 0.102481 TCGTAATCGAGCTCCAAGCC 59.898 55.000 8.47 0.00 41.35 4.35
2948 3242 0.179111 CGTAATCGAGCTCCAAGCCA 60.179 55.000 8.47 0.00 43.77 4.75
2949 3243 1.576356 GTAATCGAGCTCCAAGCCAG 58.424 55.000 8.47 0.00 43.77 4.85
2950 3244 1.137086 GTAATCGAGCTCCAAGCCAGA 59.863 52.381 8.47 0.00 43.77 3.86
2951 3245 0.177604 AATCGAGCTCCAAGCCAGAG 59.822 55.000 8.47 0.00 43.77 3.35
2952 3246 0.975040 ATCGAGCTCCAAGCCAGAGT 60.975 55.000 8.47 0.00 43.77 3.24
2953 3247 1.153667 CGAGCTCCAAGCCAGAGTC 60.154 63.158 8.47 0.00 43.77 3.36
2954 3248 1.881903 CGAGCTCCAAGCCAGAGTCA 61.882 60.000 8.47 0.00 43.77 3.41
2955 3249 0.390998 GAGCTCCAAGCCAGAGTCAC 60.391 60.000 0.87 0.00 43.77 3.67
2956 3250 0.835543 AGCTCCAAGCCAGAGTCACT 60.836 55.000 0.00 0.00 43.77 3.41
2957 3251 0.673022 GCTCCAAGCCAGAGTCACTG 60.673 60.000 0.00 0.00 45.36 3.66
2958 3252 0.673022 CTCCAAGCCAGAGTCACTGC 60.673 60.000 0.00 0.00 44.52 4.40
2959 3253 1.673665 CCAAGCCAGAGTCACTGCC 60.674 63.158 0.00 0.00 44.52 4.85
2960 3254 2.031516 CAAGCCAGAGTCACTGCCG 61.032 63.158 0.00 0.00 44.52 5.69
2961 3255 3.245668 AAGCCAGAGTCACTGCCGG 62.246 63.158 0.00 0.00 44.52 6.13
2962 3256 3.695606 GCCAGAGTCACTGCCGGA 61.696 66.667 5.05 0.00 44.52 5.14
2963 3257 2.575993 CCAGAGTCACTGCCGGAG 59.424 66.667 5.05 1.84 44.52 4.63
2964 3258 2.125753 CAGAGTCACTGCCGGAGC 60.126 66.667 5.05 0.00 39.86 4.70
2965 3259 2.283532 AGAGTCACTGCCGGAGCT 60.284 61.111 5.05 0.00 40.80 4.09
2966 3260 2.125753 GAGTCACTGCCGGAGCTG 60.126 66.667 5.05 0.00 43.17 4.24
2967 3261 4.385405 AGTCACTGCCGGAGCTGC 62.385 66.667 5.05 0.00 41.37 5.25
2968 3262 4.385405 GTCACTGCCGGAGCTGCT 62.385 66.667 5.05 0.00 41.37 4.24
2969 3263 4.074526 TCACTGCCGGAGCTGCTC 62.075 66.667 21.17 21.17 41.37 4.26
2970 3264 4.383861 CACTGCCGGAGCTGCTCA 62.384 66.667 28.95 10.07 41.37 4.26
2971 3265 3.397439 ACTGCCGGAGCTGCTCAT 61.397 61.111 28.95 6.05 41.37 2.90
2972 3266 2.895865 CTGCCGGAGCTGCTCATG 60.896 66.667 28.95 20.30 40.80 3.07
2973 3267 4.478371 TGCCGGAGCTGCTCATGG 62.478 66.667 28.95 27.67 40.80 3.66
2974 3268 4.479993 GCCGGAGCTGCTCATGGT 62.480 66.667 29.23 0.00 32.49 3.55
2975 3269 2.513204 CCGGAGCTGCTCATGGTG 60.513 66.667 28.95 13.46 31.08 4.17
2976 3270 2.513204 CGGAGCTGCTCATGGTGG 60.513 66.667 28.95 8.48 31.08 4.61
2977 3271 2.673523 GGAGCTGCTCATGGTGGT 59.326 61.111 28.95 0.00 31.08 4.16
2978 3272 1.748122 GGAGCTGCTCATGGTGGTG 60.748 63.158 28.95 0.00 31.08 4.17
2979 3273 1.748122 GAGCTGCTCATGGTGGTGG 60.748 63.158 24.02 0.00 0.00 4.61
2980 3274 2.189191 GAGCTGCTCATGGTGGTGGA 62.189 60.000 24.02 0.00 0.00 4.02
2981 3275 1.077212 GCTGCTCATGGTGGTGGAT 60.077 57.895 0.00 0.00 0.00 3.41
2982 3276 1.381928 GCTGCTCATGGTGGTGGATG 61.382 60.000 0.00 0.00 0.00 3.51
2983 3277 0.750546 CTGCTCATGGTGGTGGATGG 60.751 60.000 0.00 0.00 0.00 3.51
2984 3278 1.454479 GCTCATGGTGGTGGATGGG 60.454 63.158 0.00 0.00 0.00 4.00
2985 3279 1.925285 GCTCATGGTGGTGGATGGGA 61.925 60.000 0.00 0.00 0.00 4.37
2986 3280 0.848735 CTCATGGTGGTGGATGGGAT 59.151 55.000 0.00 0.00 0.00 3.85
2987 3281 0.846015 TCATGGTGGTGGATGGGATC 59.154 55.000 0.00 0.00 0.00 3.36
2988 3282 0.535780 CATGGTGGTGGATGGGATCG 60.536 60.000 0.00 0.00 0.00 3.69
2989 3283 1.708993 ATGGTGGTGGATGGGATCGG 61.709 60.000 0.00 0.00 0.00 4.18
2990 3284 2.070039 GGTGGTGGATGGGATCGGA 61.070 63.158 0.00 0.00 0.00 4.55
2991 3285 1.632018 GGTGGTGGATGGGATCGGAA 61.632 60.000 0.00 0.00 0.00 4.30
2992 3286 0.463833 GTGGTGGATGGGATCGGAAC 60.464 60.000 0.00 0.00 0.00 3.62
2993 3287 1.148498 GGTGGATGGGATCGGAACC 59.852 63.158 0.00 0.00 0.00 3.62
2994 3288 1.227556 GTGGATGGGATCGGAACCG 60.228 63.158 6.94 6.94 41.35 4.44
2995 3289 2.426023 GGATGGGATCGGAACCGG 59.574 66.667 13.29 0.00 40.25 5.28
2996 3290 2.138179 GGATGGGATCGGAACCGGA 61.138 63.158 9.46 1.06 40.25 5.14
2997 3291 1.367840 GATGGGATCGGAACCGGAG 59.632 63.158 9.46 0.00 40.25 4.63
2998 3292 1.075525 ATGGGATCGGAACCGGAGA 60.076 57.895 9.46 1.77 40.25 3.71
2999 3293 1.115930 ATGGGATCGGAACCGGAGAG 61.116 60.000 9.46 0.00 40.25 3.20
3001 3295 2.499827 GGATCGGAACCGGAGAGGG 61.500 68.421 9.46 0.00 46.96 4.30
3002 3296 1.455217 GATCGGAACCGGAGAGGGA 60.455 63.158 9.46 0.00 46.96 4.20
3003 3297 1.455959 ATCGGAACCGGAGAGGGAG 60.456 63.158 9.46 0.00 46.96 4.30
3004 3298 1.934459 ATCGGAACCGGAGAGGGAGA 61.934 60.000 9.46 0.00 46.96 3.71
3005 3299 2.122167 CGGAACCGGAGAGGGAGAG 61.122 68.421 9.46 0.00 46.96 3.20
3006 3300 1.758906 GGAACCGGAGAGGGAGAGG 60.759 68.421 9.46 0.00 46.96 3.69
3007 3301 1.306970 GAACCGGAGAGGGAGAGGA 59.693 63.158 9.46 0.00 46.96 3.71
3008 3302 0.753848 GAACCGGAGAGGGAGAGGAG 60.754 65.000 9.46 0.00 46.96 3.69
3009 3303 1.511316 AACCGGAGAGGGAGAGGAGT 61.511 60.000 9.46 0.00 46.96 3.85
3010 3304 1.454847 CCGGAGAGGGAGAGGAGTG 60.455 68.421 0.00 0.00 35.97 3.51
3011 3305 1.454847 CGGAGAGGGAGAGGAGTGG 60.455 68.421 0.00 0.00 0.00 4.00
3012 3306 1.927569 CGGAGAGGGAGAGGAGTGGA 61.928 65.000 0.00 0.00 0.00 4.02
3013 3307 0.396556 GGAGAGGGAGAGGAGTGGAC 60.397 65.000 0.00 0.00 0.00 4.02
3014 3308 0.333312 GAGAGGGAGAGGAGTGGACA 59.667 60.000 0.00 0.00 0.00 4.02
3015 3309 0.334676 AGAGGGAGAGGAGTGGACAG 59.665 60.000 0.00 0.00 0.00 3.51
3016 3310 0.333312 GAGGGAGAGGAGTGGACAGA 59.667 60.000 0.00 0.00 0.00 3.41
3017 3311 0.334676 AGGGAGAGGAGTGGACAGAG 59.665 60.000 0.00 0.00 0.00 3.35
3018 3312 0.686112 GGGAGAGGAGTGGACAGAGG 60.686 65.000 0.00 0.00 0.00 3.69
3019 3313 0.686112 GGAGAGGAGTGGACAGAGGG 60.686 65.000 0.00 0.00 0.00 4.30
3020 3314 0.333312 GAGAGGAGTGGACAGAGGGA 59.667 60.000 0.00 0.00 0.00 4.20
3021 3315 0.334676 AGAGGAGTGGACAGAGGGAG 59.665 60.000 0.00 0.00 0.00 4.30
3022 3316 1.305718 AGGAGTGGACAGAGGGAGC 60.306 63.158 0.00 0.00 0.00 4.70
3023 3317 2.716017 GGAGTGGACAGAGGGAGCG 61.716 68.421 0.00 0.00 0.00 5.03
3024 3318 1.679305 GAGTGGACAGAGGGAGCGA 60.679 63.158 0.00 0.00 0.00 4.93
3025 3319 1.662438 GAGTGGACAGAGGGAGCGAG 61.662 65.000 0.00 0.00 0.00 5.03
3026 3320 1.679305 GTGGACAGAGGGAGCGAGA 60.679 63.158 0.00 0.00 0.00 4.04
3027 3321 1.379176 TGGACAGAGGGAGCGAGAG 60.379 63.158 0.00 0.00 0.00 3.20
3028 3322 1.077357 GGACAGAGGGAGCGAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
3029 3323 1.101049 GGACAGAGGGAGCGAGAGAG 61.101 65.000 0.00 0.00 0.00 3.20
3030 3324 1.077068 ACAGAGGGAGCGAGAGAGG 60.077 63.158 0.00 0.00 0.00 3.69
3031 3325 1.827789 CAGAGGGAGCGAGAGAGGG 60.828 68.421 0.00 0.00 0.00 4.30
3032 3326 2.004120 AGAGGGAGCGAGAGAGGGA 61.004 63.158 0.00 0.00 0.00 4.20
3033 3327 1.528309 GAGGGAGCGAGAGAGGGAG 60.528 68.421 0.00 0.00 0.00 4.30
3034 3328 1.990160 GAGGGAGCGAGAGAGGGAGA 61.990 65.000 0.00 0.00 0.00 3.71
3035 3329 1.528309 GGGAGCGAGAGAGGGAGAG 60.528 68.421 0.00 0.00 0.00 3.20
3036 3330 1.529796 GGAGCGAGAGAGGGAGAGA 59.470 63.158 0.00 0.00 0.00 3.10
3037 3331 0.535102 GGAGCGAGAGAGGGAGAGAG 60.535 65.000 0.00 0.00 0.00 3.20
3038 3332 0.180406 GAGCGAGAGAGGGAGAGAGT 59.820 60.000 0.00 0.00 0.00 3.24
3039 3333 0.107214 AGCGAGAGAGGGAGAGAGTG 60.107 60.000 0.00 0.00 0.00 3.51
3040 3334 0.107410 GCGAGAGAGGGAGAGAGTGA 60.107 60.000 0.00 0.00 0.00 3.41
3041 3335 1.953559 CGAGAGAGGGAGAGAGTGAG 58.046 60.000 0.00 0.00 0.00 3.51
3042 3336 1.680338 GAGAGAGGGAGAGAGTGAGC 58.320 60.000 0.00 0.00 0.00 4.26
3043 3337 1.212935 GAGAGAGGGAGAGAGTGAGCT 59.787 57.143 0.00 0.00 0.00 4.09
3044 3338 2.438021 GAGAGAGGGAGAGAGTGAGCTA 59.562 54.545 0.00 0.00 0.00 3.32
3045 3339 2.439507 AGAGAGGGAGAGAGTGAGCTAG 59.560 54.545 0.00 0.00 0.00 3.42
3046 3340 1.494721 AGAGGGAGAGAGTGAGCTAGG 59.505 57.143 0.00 0.00 0.00 3.02
3047 3341 0.555769 AGGGAGAGAGTGAGCTAGGG 59.444 60.000 0.00 0.00 0.00 3.53
3048 3342 0.260523 GGGAGAGAGTGAGCTAGGGT 59.739 60.000 0.00 0.00 0.00 4.34
3049 3343 1.342574 GGGAGAGAGTGAGCTAGGGTT 60.343 57.143 0.00 0.00 0.00 4.11
3050 3344 2.462723 GGAGAGAGTGAGCTAGGGTTT 58.537 52.381 0.00 0.00 0.00 3.27
3051 3345 2.167487 GGAGAGAGTGAGCTAGGGTTTG 59.833 54.545 0.00 0.00 0.00 2.93
3052 3346 3.093057 GAGAGAGTGAGCTAGGGTTTGA 58.907 50.000 0.00 0.00 0.00 2.69
3053 3347 3.096092 AGAGAGTGAGCTAGGGTTTGAG 58.904 50.000 0.00 0.00 0.00 3.02
3054 3348 1.552792 AGAGTGAGCTAGGGTTTGAGC 59.447 52.381 0.00 0.00 39.08 4.26
3058 3352 3.256281 AGCTAGGGTTTGAGCTTGC 57.744 52.632 0.00 0.00 46.99 4.01
3059 3353 0.322906 AGCTAGGGTTTGAGCTTGCC 60.323 55.000 0.00 0.00 46.99 4.52
3060 3354 1.648467 GCTAGGGTTTGAGCTTGCCG 61.648 60.000 0.00 0.00 35.73 5.69
3061 3355 1.648467 CTAGGGTTTGAGCTTGCCGC 61.648 60.000 0.00 0.00 39.57 6.53
3062 3356 4.056125 GGGTTTGAGCTTGCCGCC 62.056 66.667 0.00 0.00 40.39 6.13
3063 3357 4.056125 GGTTTGAGCTTGCCGCCC 62.056 66.667 0.00 0.00 40.39 6.13
3064 3358 4.404654 GTTTGAGCTTGCCGCCCG 62.405 66.667 0.00 0.00 40.39 6.13
3091 3385 4.261701 TTTTTGTGGGGTCCGTGG 57.738 55.556 0.00 0.00 0.00 4.94
3092 3386 1.306970 TTTTTGTGGGGTCCGTGGT 59.693 52.632 0.00 0.00 0.00 4.16
3093 3387 1.038130 TTTTTGTGGGGTCCGTGGTG 61.038 55.000 0.00 0.00 0.00 4.17
3094 3388 2.912987 TTTTGTGGGGTCCGTGGTGG 62.913 60.000 0.00 0.00 40.09 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.640963 GTAATACCGATGCTACTAATTCATTCT 57.359 33.333 0.00 0.00 0.00 2.40
3 4 8.870879 GGTAATACCGATGCTACTAATTCATTC 58.129 37.037 0.00 0.00 0.00 2.67
5 6 7.180408 AGGGTAATACCGATGCTACTAATTCAT 59.820 37.037 3.01 0.00 39.83 2.57
6 7 6.495872 AGGGTAATACCGATGCTACTAATTCA 59.504 38.462 3.01 0.00 39.83 2.57
7 8 6.932947 AGGGTAATACCGATGCTACTAATTC 58.067 40.000 3.01 0.00 39.83 2.17
8 9 6.930068 AGGGTAATACCGATGCTACTAATT 57.070 37.500 3.01 0.00 39.83 1.40
9 10 6.930068 AAGGGTAATACCGATGCTACTAAT 57.070 37.500 3.01 0.00 39.83 1.73
10 11 6.736110 AAAGGGTAATACCGATGCTACTAA 57.264 37.500 3.01 0.00 39.83 2.24
11 12 7.725397 TCTTAAAGGGTAATACCGATGCTACTA 59.275 37.037 3.01 0.00 39.83 1.82
12 13 6.552350 TCTTAAAGGGTAATACCGATGCTACT 59.448 38.462 3.01 0.00 39.83 2.57
13 14 6.752168 TCTTAAAGGGTAATACCGATGCTAC 58.248 40.000 3.01 0.00 39.83 3.58
14 15 6.982160 TCTTAAAGGGTAATACCGATGCTA 57.018 37.500 3.01 0.00 39.83 3.49
15 16 5.881923 TCTTAAAGGGTAATACCGATGCT 57.118 39.130 3.01 0.00 39.83 3.79
16 17 6.930667 TTTCTTAAAGGGTAATACCGATGC 57.069 37.500 3.01 0.00 39.83 3.91
17 18 8.349983 CCATTTTCTTAAAGGGTAATACCGATG 58.650 37.037 3.01 0.00 39.70 3.84
18 19 8.276477 TCCATTTTCTTAAAGGGTAATACCGAT 58.724 33.333 3.01 0.00 43.83 4.18
19 20 7.631933 TCCATTTTCTTAAAGGGTAATACCGA 58.368 34.615 3.01 0.00 43.83 4.69
20 21 7.868906 TCCATTTTCTTAAAGGGTAATACCG 57.131 36.000 3.01 0.00 43.83 4.02
114 115 7.868906 TTCATTTTCTTAAGGGGTAATACCG 57.131 36.000 3.01 0.00 39.83 4.02
236 237 5.076182 TGCCACTCAATCATTCCTTTTGTA 58.924 37.500 0.00 0.00 0.00 2.41
239 240 5.750352 AATGCCACTCAATCATTCCTTTT 57.250 34.783 0.00 0.00 0.00 2.27
244 245 7.649306 GGTAATACAAATGCCACTCAATCATTC 59.351 37.037 0.00 0.00 30.84 2.67
246 247 6.835488 AGGTAATACAAATGCCACTCAATCAT 59.165 34.615 0.00 0.00 0.00 2.45
248 249 6.699575 AGGTAATACAAATGCCACTCAATC 57.300 37.500 0.00 0.00 0.00 2.67
252 253 8.276252 TCTTTAAGGTAATACAAATGCCACTC 57.724 34.615 0.00 0.00 0.00 3.51
253 254 8.644374 TTCTTTAAGGTAATACAAATGCCACT 57.356 30.769 0.00 0.00 0.00 4.00
254 255 8.736244 TCTTCTTTAAGGTAATACAAATGCCAC 58.264 33.333 0.00 0.00 33.22 5.01
255 256 8.871629 TCTTCTTTAAGGTAATACAAATGCCA 57.128 30.769 0.00 0.00 33.22 4.92
329 332 6.964807 ATAGCAATGCCACTAATTCATTCA 57.035 33.333 0.00 0.00 0.00 2.57
334 337 5.770162 AGGGTAATAGCAATGCCACTAATTC 59.230 40.000 0.00 0.00 0.00 2.17
335 338 5.705400 AGGGTAATAGCAATGCCACTAATT 58.295 37.500 0.00 0.00 0.00 1.40
336 339 5.324832 AGGGTAATAGCAATGCCACTAAT 57.675 39.130 0.00 0.00 0.00 1.73
342 345 4.207165 TCTCAAAGGGTAATAGCAATGCC 58.793 43.478 0.00 0.00 0.00 4.40
373 376 5.920273 CAGTGAAAAGTTGTGTGTGAGTTTT 59.080 36.000 0.00 0.00 32.63 2.43
378 381 5.697473 TTTCAGTGAAAAGTTGTGTGTGA 57.303 34.783 15.92 0.00 0.00 3.58
379 382 6.365789 ACAATTTCAGTGAAAAGTTGTGTGTG 59.634 34.615 25.87 14.48 35.11 3.82
380 383 6.454795 ACAATTTCAGTGAAAAGTTGTGTGT 58.545 32.000 25.87 16.62 35.11 3.72
462 465 9.169468 GTATAACTGTATGCACACAAATATTGC 57.831 33.333 0.00 0.00 36.76 3.56
465 468 9.830975 TGAGTATAACTGTATGCACACAAATAT 57.169 29.630 0.00 3.59 0.00 1.28
480 483 4.080582 TGGGATGTTGGGTGAGTATAACTG 60.081 45.833 0.00 0.00 0.00 3.16
482 485 4.497291 TGGGATGTTGGGTGAGTATAAC 57.503 45.455 0.00 0.00 0.00 1.89
486 489 2.983192 TCTTTGGGATGTTGGGTGAGTA 59.017 45.455 0.00 0.00 0.00 2.59
491 494 3.591527 TGTCTATCTTTGGGATGTTGGGT 59.408 43.478 0.00 0.00 35.98 4.51
583 598 1.272648 CCAGCCATTCCCCTTTCTTCA 60.273 52.381 0.00 0.00 0.00 3.02
585 600 0.041684 CCCAGCCATTCCCCTTTCTT 59.958 55.000 0.00 0.00 0.00 2.52
593 608 3.134127 GTGCGACCCAGCCATTCC 61.134 66.667 0.00 0.00 36.02 3.01
602 617 1.451387 CCATTACCAGGTGCGACCC 60.451 63.158 0.76 0.00 39.75 4.46
603 618 1.451387 CCCATTACCAGGTGCGACC 60.451 63.158 0.76 0.00 38.99 4.79
608 623 2.092212 AGATGAAGCCCATTACCAGGTG 60.092 50.000 0.76 0.00 35.17 4.00
613 628 7.284489 TGTGTTAAATAGATGAAGCCCATTACC 59.716 37.037 0.00 0.00 35.17 2.85
619 634 5.417580 TGGTTGTGTTAAATAGATGAAGCCC 59.582 40.000 0.00 0.00 0.00 5.19
625 640 7.657336 AGGTGTTTGGTTGTGTTAAATAGATG 58.343 34.615 0.00 0.00 0.00 2.90
626 641 7.833285 AGGTGTTTGGTTGTGTTAAATAGAT 57.167 32.000 0.00 0.00 0.00 1.98
627 642 7.648039 AAGGTGTTTGGTTGTGTTAAATAGA 57.352 32.000 0.00 0.00 0.00 1.98
628 643 8.842280 TCTAAGGTGTTTGGTTGTGTTAAATAG 58.158 33.333 0.00 0.00 0.00 1.73
629 644 8.749026 TCTAAGGTGTTTGGTTGTGTTAAATA 57.251 30.769 0.00 0.00 0.00 1.40
630 645 7.558444 TCTCTAAGGTGTTTGGTTGTGTTAAAT 59.442 33.333 0.00 0.00 0.00 1.40
631 646 6.885376 TCTCTAAGGTGTTTGGTTGTGTTAAA 59.115 34.615 0.00 0.00 0.00 1.52
632 647 6.416415 TCTCTAAGGTGTTTGGTTGTGTTAA 58.584 36.000 0.00 0.00 0.00 2.01
633 648 5.991861 TCTCTAAGGTGTTTGGTTGTGTTA 58.008 37.500 0.00 0.00 0.00 2.41
634 649 4.850680 TCTCTAAGGTGTTTGGTTGTGTT 58.149 39.130 0.00 0.00 0.00 3.32
635 650 4.497291 TCTCTAAGGTGTTTGGTTGTGT 57.503 40.909 0.00 0.00 0.00 3.72
636 651 4.638421 TGTTCTCTAAGGTGTTTGGTTGTG 59.362 41.667 0.00 0.00 0.00 3.33
637 652 4.850680 TGTTCTCTAAGGTGTTTGGTTGT 58.149 39.130 0.00 0.00 0.00 3.32
638 653 5.828299 TTGTTCTCTAAGGTGTTTGGTTG 57.172 39.130 0.00 0.00 0.00 3.77
639 654 5.126545 GGTTTGTTCTCTAAGGTGTTTGGTT 59.873 40.000 0.00 0.00 0.00 3.67
640 655 4.643334 GGTTTGTTCTCTAAGGTGTTTGGT 59.357 41.667 0.00 0.00 0.00 3.67
641 656 4.642885 TGGTTTGTTCTCTAAGGTGTTTGG 59.357 41.667 0.00 0.00 0.00 3.28
642 657 5.588648 TCTGGTTTGTTCTCTAAGGTGTTTG 59.411 40.000 0.00 0.00 0.00 2.93
643 658 5.751586 TCTGGTTTGTTCTCTAAGGTGTTT 58.248 37.500 0.00 0.00 0.00 2.83
644 659 5.367945 TCTGGTTTGTTCTCTAAGGTGTT 57.632 39.130 0.00 0.00 0.00 3.32
645 660 5.367945 TTCTGGTTTGTTCTCTAAGGTGT 57.632 39.130 0.00 0.00 0.00 4.16
646 661 6.693315 TTTTCTGGTTTGTTCTCTAAGGTG 57.307 37.500 0.00 0.00 0.00 4.00
669 684 6.074356 GCTTTGTGATTCGTGCTGTTATTTTT 60.074 34.615 0.00 0.00 0.00 1.94
670 685 5.402270 GCTTTGTGATTCGTGCTGTTATTTT 59.598 36.000 0.00 0.00 0.00 1.82
671 686 4.917415 GCTTTGTGATTCGTGCTGTTATTT 59.083 37.500 0.00 0.00 0.00 1.40
672 687 4.023279 TGCTTTGTGATTCGTGCTGTTATT 60.023 37.500 0.00 0.00 0.00 1.40
673 688 3.501828 TGCTTTGTGATTCGTGCTGTTAT 59.498 39.130 0.00 0.00 0.00 1.89
674 689 2.875317 TGCTTTGTGATTCGTGCTGTTA 59.125 40.909 0.00 0.00 0.00 2.41
675 690 1.675483 TGCTTTGTGATTCGTGCTGTT 59.325 42.857 0.00 0.00 0.00 3.16
676 691 1.308047 TGCTTTGTGATTCGTGCTGT 58.692 45.000 0.00 0.00 0.00 4.40
677 692 2.031769 TCTTGCTTTGTGATTCGTGCTG 60.032 45.455 0.00 0.00 0.00 4.41
678 693 2.221169 TCTTGCTTTGTGATTCGTGCT 58.779 42.857 0.00 0.00 0.00 4.40
679 694 2.686558 TCTTGCTTTGTGATTCGTGC 57.313 45.000 0.00 0.00 0.00 5.34
680 695 4.408993 TGATCTTGCTTTGTGATTCGTG 57.591 40.909 0.00 0.00 0.00 4.35
681 696 4.611355 CGTTGATCTTGCTTTGTGATTCGT 60.611 41.667 0.00 0.00 0.00 3.85
682 697 3.842428 CGTTGATCTTGCTTTGTGATTCG 59.158 43.478 0.00 0.00 0.00 3.34
683 698 4.161333 CCGTTGATCTTGCTTTGTGATTC 58.839 43.478 0.00 0.00 0.00 2.52
684 699 3.612479 GCCGTTGATCTTGCTTTGTGATT 60.612 43.478 0.00 0.00 0.00 2.57
685 700 2.095059 GCCGTTGATCTTGCTTTGTGAT 60.095 45.455 0.00 0.00 0.00 3.06
686 701 1.266718 GCCGTTGATCTTGCTTTGTGA 59.733 47.619 0.00 0.00 0.00 3.58
687 702 1.001487 TGCCGTTGATCTTGCTTTGTG 60.001 47.619 0.00 0.00 0.00 3.33
688 703 1.001378 GTGCCGTTGATCTTGCTTTGT 60.001 47.619 0.00 0.00 0.00 2.83
689 704 1.001487 TGTGCCGTTGATCTTGCTTTG 60.001 47.619 0.00 0.00 0.00 2.77
690 705 1.001378 GTGTGCCGTTGATCTTGCTTT 60.001 47.619 0.00 0.00 0.00 3.51
691 706 0.593128 GTGTGCCGTTGATCTTGCTT 59.407 50.000 0.00 0.00 0.00 3.91
692 707 0.534877 TGTGTGCCGTTGATCTTGCT 60.535 50.000 0.00 0.00 0.00 3.91
693 708 0.310543 TTGTGTGCCGTTGATCTTGC 59.689 50.000 0.00 0.00 0.00 4.01
694 709 2.772568 TTTGTGTGCCGTTGATCTTG 57.227 45.000 0.00 0.00 0.00 3.02
695 710 4.050553 CAATTTTGTGTGCCGTTGATCTT 58.949 39.130 0.00 0.00 0.00 2.40
696 711 3.317711 TCAATTTTGTGTGCCGTTGATCT 59.682 39.130 0.00 0.00 0.00 2.75
697 712 3.425193 GTCAATTTTGTGTGCCGTTGATC 59.575 43.478 0.00 0.00 0.00 2.92
698 713 3.068024 AGTCAATTTTGTGTGCCGTTGAT 59.932 39.130 0.00 0.00 0.00 2.57
699 714 2.425312 AGTCAATTTTGTGTGCCGTTGA 59.575 40.909 0.00 0.00 0.00 3.18
700 715 2.535166 CAGTCAATTTTGTGTGCCGTTG 59.465 45.455 0.00 0.00 0.00 4.10
701 716 2.425312 TCAGTCAATTTTGTGTGCCGTT 59.575 40.909 0.00 0.00 0.00 4.44
702 717 2.020720 TCAGTCAATTTTGTGTGCCGT 58.979 42.857 0.00 0.00 0.00 5.68
703 718 2.384382 GTCAGTCAATTTTGTGTGCCG 58.616 47.619 0.00 0.00 0.00 5.69
704 719 2.545742 GGGTCAGTCAATTTTGTGTGCC 60.546 50.000 0.00 0.00 0.00 5.01
705 720 2.100584 TGGGTCAGTCAATTTTGTGTGC 59.899 45.455 0.00 0.00 0.00 4.57
706 721 4.383850 TTGGGTCAGTCAATTTTGTGTG 57.616 40.909 0.00 0.00 0.00 3.82
707 722 5.413309 TTTTGGGTCAGTCAATTTTGTGT 57.587 34.783 0.00 0.00 0.00 3.72
708 723 8.430801 TTTATTTTGGGTCAGTCAATTTTGTG 57.569 30.769 0.00 0.00 0.00 3.33
709 724 9.625747 ATTTTATTTTGGGTCAGTCAATTTTGT 57.374 25.926 0.00 0.00 0.00 2.83
713 728 9.844257 TGAAATTTTATTTTGGGTCAGTCAATT 57.156 25.926 0.00 0.00 0.00 2.32
716 731 7.387397 GCATGAAATTTTATTTTGGGTCAGTCA 59.613 33.333 0.00 0.00 0.00 3.41
743 758 5.389859 TGCAATTTAGCTGCATGTAAGTT 57.610 34.783 1.02 0.00 44.67 2.66
788 807 0.464013 ATGATGACTCAGCTGCTGGC 60.464 55.000 27.79 17.84 42.19 4.85
799 818 1.485480 CTGGACTGCCTGATGATGACT 59.515 52.381 0.00 0.00 35.28 3.41
808 827 1.673665 GACAAGCCTGGACTGCCTG 60.674 63.158 0.00 0.00 34.31 4.85
814 833 2.094182 TCATCTAACGACAAGCCTGGAC 60.094 50.000 0.00 0.00 0.00 4.02
838 857 5.353111 TCATGCATAGTCGTATCCGAAAAA 58.647 37.500 0.00 0.00 46.26 1.94
839 858 4.939271 TCATGCATAGTCGTATCCGAAAA 58.061 39.130 0.00 0.00 46.26 2.29
863 882 1.810030 CGCGAGGTTAAGGCTGACC 60.810 63.158 0.00 11.33 36.15 4.02
924 943 0.782384 CACGCGTACTCTTTGTCCAC 59.218 55.000 13.44 0.00 0.00 4.02
953 973 2.937591 TGCTACTAGTTTTCCACGACG 58.062 47.619 0.00 0.00 0.00 5.12
968 988 2.813474 TGCACGTCGGCATGCTAC 60.813 61.111 18.92 14.89 42.55 3.58
972 992 4.450122 GCTGTGCACGTCGGCATG 62.450 66.667 13.13 8.64 46.92 4.06
984 1004 2.515926 ATAGTATGGAGCACGCTGTG 57.484 50.000 0.00 4.61 36.51 3.66
985 1005 5.622460 GCTTATATAGTATGGAGCACGCTGT 60.622 44.000 0.00 0.00 0.00 4.40
986 1006 4.800993 GCTTATATAGTATGGAGCACGCTG 59.199 45.833 0.00 0.00 0.00 5.18
987 1007 4.462834 TGCTTATATAGTATGGAGCACGCT 59.537 41.667 10.88 0.00 35.43 5.07
988 1008 4.744570 TGCTTATATAGTATGGAGCACGC 58.255 43.478 10.88 0.00 35.43 5.34
997 1017 7.036220 GCCGTGTTCTGATGCTTATATAGTAT 58.964 38.462 0.00 0.00 31.20 2.12
1000 1020 5.473931 AGCCGTGTTCTGATGCTTATATAG 58.526 41.667 0.00 0.00 0.00 1.31
1001 1021 5.468540 AGCCGTGTTCTGATGCTTATATA 57.531 39.130 0.00 0.00 0.00 0.86
1002 1022 4.342862 AGCCGTGTTCTGATGCTTATAT 57.657 40.909 0.00 0.00 0.00 0.86
1003 1023 3.819564 AGCCGTGTTCTGATGCTTATA 57.180 42.857 0.00 0.00 0.00 0.98
1004 1024 2.698855 AGCCGTGTTCTGATGCTTAT 57.301 45.000 0.00 0.00 0.00 1.73
1005 1025 2.346803 GAAGCCGTGTTCTGATGCTTA 58.653 47.619 0.00 0.00 41.97 3.09
1025 1045 3.005554 GCCGTGAGATGGATTGATATGG 58.994 50.000 0.00 0.00 0.00 2.74
1026 1046 2.669924 CGCCGTGAGATGGATTGATATG 59.330 50.000 0.00 0.00 0.00 1.78
1027 1047 2.354103 CCGCCGTGAGATGGATTGATAT 60.354 50.000 0.00 0.00 0.00 1.63
1032 1052 2.203070 GCCGCCGTGAGATGGATT 60.203 61.111 0.00 0.00 0.00 3.01
1040 1062 3.411418 GATCGAGAAGCCGCCGTGA 62.411 63.158 0.00 0.00 0.00 4.35
1062 1084 3.384789 TCTTTTGGTCCGATCGAGATGAT 59.615 43.478 18.66 0.00 41.06 2.45
1064 1086 3.119291 CTCTTTTGGTCCGATCGAGATG 58.881 50.000 18.66 0.00 0.00 2.90
1069 1091 2.271800 CTTCCTCTTTTGGTCCGATCG 58.728 52.381 8.51 8.51 0.00 3.69
1070 1092 2.010497 GCTTCCTCTTTTGGTCCGATC 58.990 52.381 0.00 0.00 0.00 3.69
1071 1093 1.351017 TGCTTCCTCTTTTGGTCCGAT 59.649 47.619 0.00 0.00 0.00 4.18
1072 1094 0.762418 TGCTTCCTCTTTTGGTCCGA 59.238 50.000 0.00 0.00 0.00 4.55
1073 1095 1.160137 CTGCTTCCTCTTTTGGTCCG 58.840 55.000 0.00 0.00 0.00 4.79
1243 1273 6.424509 CCTACGACTACTAGATTACCAGACTG 59.575 46.154 0.00 0.00 0.00 3.51
1263 1407 5.665459 AGTTTTCTTCAGATGGATCCTACG 58.335 41.667 14.23 0.00 0.00 3.51
1268 1412 7.119262 TCCGTTTTAGTTTTCTTCAGATGGATC 59.881 37.037 0.00 0.00 0.00 3.36
1353 1508 1.910580 ATGCCGGGTTGTCAGGGTAG 61.911 60.000 2.18 0.00 0.00 3.18
1505 1663 3.501396 CGCCAACGCCAATGATCT 58.499 55.556 0.00 0.00 0.00 2.75
1928 2178 2.283298 ACACAGCTTCTGAGTGTTGTG 58.717 47.619 19.57 19.57 43.40 3.33
1939 2189 1.448013 GGACGCCCTACACAGCTTC 60.448 63.158 0.00 0.00 0.00 3.86
1956 2208 1.407258 CGGAGAGGTAGAAGCAAGAGG 59.593 57.143 0.00 0.00 0.00 3.69
2012 2272 5.348986 TCAATCGGAAGACATAGCAGTTAC 58.651 41.667 0.00 0.00 46.97 2.50
2106 2381 2.268298 GATAGTGTTGGTACCGCACAG 58.732 52.381 29.24 0.00 35.75 3.66
2123 2398 9.687210 AGCGAACACGAGTAAATTAATATGATA 57.313 29.630 0.00 0.00 0.00 2.15
2132 2411 6.588756 TGAAGAATAGCGAACACGAGTAAATT 59.411 34.615 0.00 0.00 0.00 1.82
2196 2476 5.011533 AGGCACATAATGTTTAGCAAAACCA 59.988 36.000 0.00 0.00 43.66 3.67
2197 2477 5.478407 AGGCACATAATGTTTAGCAAAACC 58.522 37.500 0.00 0.00 43.66 3.27
2212 2492 6.584563 GCGTCAAGAAAAATTTAAGGCACATA 59.415 34.615 0.00 0.00 0.00 2.29
2221 2501 4.971220 GTGAACGGCGTCAAGAAAAATTTA 59.029 37.500 15.17 0.00 0.00 1.40
2228 2508 1.588674 AATGTGAACGGCGTCAAGAA 58.411 45.000 15.17 0.00 0.00 2.52
2231 2511 2.333926 CTCTAATGTGAACGGCGTCAA 58.666 47.619 15.17 0.72 0.00 3.18
2236 2516 2.555199 AGATGCTCTAATGTGAACGGC 58.445 47.619 0.00 0.00 0.00 5.68
2239 2519 6.036517 CCAACTGTAGATGCTCTAATGTGAAC 59.963 42.308 0.00 0.00 29.58 3.18
2240 2520 6.070824 TCCAACTGTAGATGCTCTAATGTGAA 60.071 38.462 0.00 0.00 29.58 3.18
2324 2604 1.122019 ATATGAGGAGTGCCCGGTCC 61.122 60.000 0.00 0.00 40.87 4.46
2375 2655 5.661565 TGGGTAGTATGGATATAAGGTGCT 58.338 41.667 0.00 0.00 0.00 4.40
2485 2766 8.956426 TCTTTTGGATATGGTGAAGTATGTTTC 58.044 33.333 0.00 0.00 0.00 2.78
2687 2979 2.661866 GACAGCGGCGACAGTTGT 60.662 61.111 12.98 6.09 35.78 3.32
2701 2993 1.228337 TCCAACTCCGACTCCGACA 60.228 57.895 0.00 0.00 38.22 4.35
2728 3020 0.745845 CCGTCAGATGAAGGGGCTTG 60.746 60.000 6.89 0.00 39.55 4.01
2729 3021 0.909610 TCCGTCAGATGAAGGGGCTT 60.910 55.000 13.75 0.00 42.76 4.35
2762 3054 2.672996 GCAAGGCTGAAGCGGGAA 60.673 61.111 0.00 0.00 43.26 3.97
2805 3099 3.775654 CACCGGAGCTGGACCCTC 61.776 72.222 9.46 0.00 0.00 4.30
2806 3100 4.640690 ACACCGGAGCTGGACCCT 62.641 66.667 9.46 0.00 0.00 4.34
2807 3101 4.083862 GACACCGGAGCTGGACCC 62.084 72.222 9.46 0.00 0.00 4.46
2808 3102 4.083862 GGACACCGGAGCTGGACC 62.084 72.222 9.46 0.60 0.00 4.46
2809 3103 3.311110 TGGACACCGGAGCTGGAC 61.311 66.667 9.46 0.00 0.00 4.02
2810 3104 3.311110 GTGGACACCGGAGCTGGA 61.311 66.667 9.46 0.00 0.00 3.86
2811 3105 4.742201 CGTGGACACCGGAGCTGG 62.742 72.222 9.46 0.00 0.00 4.85
2814 3108 3.755628 TAGCGTGGACACCGGAGC 61.756 66.667 9.46 1.46 0.00 4.70
2815 3109 2.181021 GTAGCGTGGACACCGGAG 59.819 66.667 9.46 1.26 0.00 4.63
2816 3110 3.740397 CGTAGCGTGGACACCGGA 61.740 66.667 9.46 0.00 0.00 5.14
2846 3140 3.649277 ATCTGGAGCGTCGCCACAC 62.649 63.158 14.86 2.25 0.00 3.82
2847 3141 3.356639 GATCTGGAGCGTCGCCACA 62.357 63.158 14.86 12.30 0.00 4.17
2848 3142 2.583593 GATCTGGAGCGTCGCCAC 60.584 66.667 14.86 7.75 0.00 5.01
2849 3143 3.838271 GGATCTGGAGCGTCGCCA 61.838 66.667 14.86 4.69 0.00 5.69
2850 3144 4.933064 CGGATCTGGAGCGTCGCC 62.933 72.222 14.86 5.33 0.00 5.54
2851 3145 4.933064 CCGGATCTGGAGCGTCGC 62.933 72.222 16.28 9.80 0.00 5.19
2852 3146 3.209812 TCCGGATCTGGAGCGTCG 61.210 66.667 19.95 0.00 33.05 5.12
2858 3152 3.157252 GGCAGCTCCGGATCTGGA 61.157 66.667 30.87 22.28 36.37 3.86
2859 3153 2.728443 GATGGCAGCTCCGGATCTGG 62.728 65.000 30.87 15.09 37.80 3.86
2860 3154 1.301558 GATGGCAGCTCCGGATCTG 60.302 63.158 27.30 27.30 37.80 2.90
2861 3155 2.865598 CGATGGCAGCTCCGGATCT 61.866 63.158 3.57 2.08 37.80 2.75
2862 3156 2.356793 CGATGGCAGCTCCGGATC 60.357 66.667 3.57 0.00 37.80 3.36
2863 3157 3.933722 CCGATGGCAGCTCCGGAT 61.934 66.667 3.57 0.00 44.29 4.18
2865 3159 2.771763 GATACCGATGGCAGCTCCGG 62.772 65.000 15.66 15.66 46.65 5.14
2866 3160 1.373497 GATACCGATGGCAGCTCCG 60.373 63.158 0.00 0.00 37.80 4.63
2867 3161 1.004440 GGATACCGATGGCAGCTCC 60.004 63.158 0.00 0.00 0.00 4.70
2868 3162 0.601311 GTGGATACCGATGGCAGCTC 60.601 60.000 0.00 0.00 0.00 4.09
2869 3163 1.447643 GTGGATACCGATGGCAGCT 59.552 57.895 0.00 0.00 0.00 4.24
2870 3164 1.598130 GGTGGATACCGATGGCAGC 60.598 63.158 0.00 0.00 37.19 5.25
2871 3165 4.779475 GGTGGATACCGATGGCAG 57.221 61.111 0.00 0.00 37.19 4.85
2883 3177 3.319198 GGAGCGGTCCAAGGTGGA 61.319 66.667 28.27 0.00 45.98 4.02
2905 3199 3.746949 GAGATGGCCCTCCGCAGTG 62.747 68.421 0.00 0.00 40.31 3.66
2906 3200 3.474570 GAGATGGCCCTCCGCAGT 61.475 66.667 0.00 0.00 40.31 4.40
2907 3201 4.247380 GGAGATGGCCCTCCGCAG 62.247 72.222 11.81 0.00 42.80 5.18
2913 3207 1.656092 TACGAGGAGGAGATGGCCCT 61.656 60.000 0.00 0.00 36.57 5.19
2914 3208 0.759436 TTACGAGGAGGAGATGGCCC 60.759 60.000 0.00 0.00 0.00 5.80
2915 3209 1.273886 GATTACGAGGAGGAGATGGCC 59.726 57.143 0.00 0.00 0.00 5.36
2916 3210 1.068194 CGATTACGAGGAGGAGATGGC 60.068 57.143 0.00 0.00 42.66 4.40
2917 3211 2.505405 TCGATTACGAGGAGGAGATGG 58.495 52.381 0.00 0.00 43.81 3.51
2928 3222 0.102481 GGCTTGGAGCTCGATTACGA 59.898 55.000 7.83 0.00 45.93 3.43
2929 3223 0.179111 TGGCTTGGAGCTCGATTACG 60.179 55.000 7.83 0.00 41.99 3.18
2930 3224 1.137086 TCTGGCTTGGAGCTCGATTAC 59.863 52.381 7.83 0.00 41.99 1.89
2931 3225 1.410517 CTCTGGCTTGGAGCTCGATTA 59.589 52.381 7.83 0.00 41.99 1.75
2932 3226 0.177604 CTCTGGCTTGGAGCTCGATT 59.822 55.000 7.83 0.00 41.99 3.34
2933 3227 0.975040 ACTCTGGCTTGGAGCTCGAT 60.975 55.000 7.83 0.00 41.99 3.59
2934 3228 1.599606 GACTCTGGCTTGGAGCTCGA 61.600 60.000 7.83 0.00 41.99 4.04
2935 3229 1.153667 GACTCTGGCTTGGAGCTCG 60.154 63.158 7.83 0.00 41.99 5.03
2936 3230 0.390998 GTGACTCTGGCTTGGAGCTC 60.391 60.000 4.71 4.71 41.99 4.09
2937 3231 0.835543 AGTGACTCTGGCTTGGAGCT 60.836 55.000 0.00 0.00 41.99 4.09
2938 3232 0.673022 CAGTGACTCTGGCTTGGAGC 60.673 60.000 0.00 0.00 40.23 4.70
2939 3233 0.673022 GCAGTGACTCTGGCTTGGAG 60.673 60.000 6.65 0.00 43.78 3.86
2940 3234 1.372683 GCAGTGACTCTGGCTTGGA 59.627 57.895 6.65 0.00 43.78 3.53
2941 3235 3.978272 GCAGTGACTCTGGCTTGG 58.022 61.111 6.65 0.00 43.78 3.61
2946 3240 2.575993 CTCCGGCAGTGACTCTGG 59.424 66.667 0.00 4.22 43.78 3.86
2947 3241 2.125753 GCTCCGGCAGTGACTCTG 60.126 66.667 0.00 0.00 46.12 3.35
2948 3242 2.283532 AGCTCCGGCAGTGACTCT 60.284 61.111 0.00 0.00 41.70 3.24
2949 3243 2.125753 CAGCTCCGGCAGTGACTC 60.126 66.667 0.00 0.00 41.70 3.36
2950 3244 4.385405 GCAGCTCCGGCAGTGACT 62.385 66.667 0.00 0.00 41.70 3.41
2951 3245 4.385405 AGCAGCTCCGGCAGTGAC 62.385 66.667 0.00 0.00 41.70 3.67
2952 3246 4.074526 GAGCAGCTCCGGCAGTGA 62.075 66.667 11.84 0.00 41.70 3.41
2953 3247 3.677284 ATGAGCAGCTCCGGCAGTG 62.677 63.158 20.16 0.00 41.70 3.66
2954 3248 3.397439 ATGAGCAGCTCCGGCAGT 61.397 61.111 20.16 0.00 41.70 4.40
2955 3249 2.895865 CATGAGCAGCTCCGGCAG 60.896 66.667 20.16 1.39 41.70 4.85
2956 3250 4.478371 CCATGAGCAGCTCCGGCA 62.478 66.667 20.16 1.55 41.70 5.69
2957 3251 4.479993 ACCATGAGCAGCTCCGGC 62.480 66.667 22.43 0.23 39.06 6.13
2958 3252 2.513204 CACCATGAGCAGCTCCGG 60.513 66.667 20.16 20.85 0.00 5.14
2959 3253 2.513204 CCACCATGAGCAGCTCCG 60.513 66.667 20.16 10.72 0.00 4.63
2960 3254 1.748122 CACCACCATGAGCAGCTCC 60.748 63.158 20.16 2.47 0.00 4.70
2961 3255 1.748122 CCACCACCATGAGCAGCTC 60.748 63.158 16.21 16.21 0.00 4.09
2962 3256 1.569030 ATCCACCACCATGAGCAGCT 61.569 55.000 0.00 0.00 0.00 4.24
2963 3257 1.077212 ATCCACCACCATGAGCAGC 60.077 57.895 0.00 0.00 0.00 5.25
2964 3258 0.750546 CCATCCACCACCATGAGCAG 60.751 60.000 0.00 0.00 0.00 4.24
2965 3259 1.303948 CCATCCACCACCATGAGCA 59.696 57.895 0.00 0.00 0.00 4.26
2966 3260 1.454479 CCCATCCACCACCATGAGC 60.454 63.158 0.00 0.00 0.00 4.26
2967 3261 0.848735 ATCCCATCCACCACCATGAG 59.151 55.000 0.00 0.00 0.00 2.90
2968 3262 0.846015 GATCCCATCCACCACCATGA 59.154 55.000 0.00 0.00 0.00 3.07
2969 3263 0.535780 CGATCCCATCCACCACCATG 60.536 60.000 0.00 0.00 0.00 3.66
2970 3264 1.708993 CCGATCCCATCCACCACCAT 61.709 60.000 0.00 0.00 0.00 3.55
2971 3265 2.374525 CCGATCCCATCCACCACCA 61.375 63.158 0.00 0.00 0.00 4.17
2972 3266 1.632018 TTCCGATCCCATCCACCACC 61.632 60.000 0.00 0.00 0.00 4.61
2973 3267 0.463833 GTTCCGATCCCATCCACCAC 60.464 60.000 0.00 0.00 0.00 4.16
2974 3268 1.632018 GGTTCCGATCCCATCCACCA 61.632 60.000 0.00 0.00 0.00 4.17
2975 3269 1.148498 GGTTCCGATCCCATCCACC 59.852 63.158 0.00 0.00 0.00 4.61
2976 3270 1.227556 CGGTTCCGATCCCATCCAC 60.228 63.158 5.19 0.00 0.00 4.02
2977 3271 2.439960 CCGGTTCCGATCCCATCCA 61.440 63.158 13.08 0.00 0.00 3.41
2978 3272 2.100879 CTCCGGTTCCGATCCCATCC 62.101 65.000 13.08 0.00 0.00 3.51
2979 3273 1.113517 TCTCCGGTTCCGATCCCATC 61.114 60.000 13.08 0.00 0.00 3.51
2980 3274 1.075525 TCTCCGGTTCCGATCCCAT 60.076 57.895 13.08 0.00 0.00 4.00
2981 3275 1.756950 CTCTCCGGTTCCGATCCCA 60.757 63.158 13.08 0.00 0.00 4.37
2982 3276 2.499827 CCTCTCCGGTTCCGATCCC 61.500 68.421 13.08 0.00 0.00 3.85
2983 3277 2.499827 CCCTCTCCGGTTCCGATCC 61.500 68.421 13.08 0.00 0.00 3.36
2984 3278 1.455217 TCCCTCTCCGGTTCCGATC 60.455 63.158 13.08 0.00 0.00 3.69
2985 3279 1.455959 CTCCCTCTCCGGTTCCGAT 60.456 63.158 13.08 0.00 0.00 4.18
2986 3280 2.044252 CTCCCTCTCCGGTTCCGA 60.044 66.667 13.08 0.00 0.00 4.55
2987 3281 2.044252 TCTCCCTCTCCGGTTCCG 60.044 66.667 0.00 4.08 0.00 4.30
2988 3282 1.758906 CCTCTCCCTCTCCGGTTCC 60.759 68.421 0.00 0.00 0.00 3.62
2989 3283 0.753848 CTCCTCTCCCTCTCCGGTTC 60.754 65.000 0.00 0.00 0.00 3.62
2990 3284 1.308326 CTCCTCTCCCTCTCCGGTT 59.692 63.158 0.00 0.00 0.00 4.44
2991 3285 1.931705 ACTCCTCTCCCTCTCCGGT 60.932 63.158 0.00 0.00 0.00 5.28
2992 3286 1.454847 CACTCCTCTCCCTCTCCGG 60.455 68.421 0.00 0.00 0.00 5.14
2993 3287 1.454847 CCACTCCTCTCCCTCTCCG 60.455 68.421 0.00 0.00 0.00 4.63
2994 3288 0.396556 GTCCACTCCTCTCCCTCTCC 60.397 65.000 0.00 0.00 0.00 3.71
2995 3289 0.333312 TGTCCACTCCTCTCCCTCTC 59.667 60.000 0.00 0.00 0.00 3.20
2996 3290 0.334676 CTGTCCACTCCTCTCCCTCT 59.665 60.000 0.00 0.00 0.00 3.69
2997 3291 0.333312 TCTGTCCACTCCTCTCCCTC 59.667 60.000 0.00 0.00 0.00 4.30
2998 3292 0.334676 CTCTGTCCACTCCTCTCCCT 59.665 60.000 0.00 0.00 0.00 4.20
2999 3293 0.686112 CCTCTGTCCACTCCTCTCCC 60.686 65.000 0.00 0.00 0.00 4.30
3000 3294 0.686112 CCCTCTGTCCACTCCTCTCC 60.686 65.000 0.00 0.00 0.00 3.71
3001 3295 0.333312 TCCCTCTGTCCACTCCTCTC 59.667 60.000 0.00 0.00 0.00 3.20
3002 3296 0.334676 CTCCCTCTGTCCACTCCTCT 59.665 60.000 0.00 0.00 0.00 3.69
3003 3297 1.326951 GCTCCCTCTGTCCACTCCTC 61.327 65.000 0.00 0.00 0.00 3.71
3004 3298 1.305718 GCTCCCTCTGTCCACTCCT 60.306 63.158 0.00 0.00 0.00 3.69
3005 3299 2.716017 CGCTCCCTCTGTCCACTCC 61.716 68.421 0.00 0.00 0.00 3.85
3006 3300 1.662438 CTCGCTCCCTCTGTCCACTC 61.662 65.000 0.00 0.00 0.00 3.51
3007 3301 1.680651 CTCGCTCCCTCTGTCCACT 60.681 63.158 0.00 0.00 0.00 4.00
3008 3302 1.662438 CTCTCGCTCCCTCTGTCCAC 61.662 65.000 0.00 0.00 0.00 4.02
3009 3303 1.379176 CTCTCGCTCCCTCTGTCCA 60.379 63.158 0.00 0.00 0.00 4.02
3010 3304 1.077357 TCTCTCGCTCCCTCTGTCC 60.077 63.158 0.00 0.00 0.00 4.02
3011 3305 1.101049 CCTCTCTCGCTCCCTCTGTC 61.101 65.000 0.00 0.00 0.00 3.51
3012 3306 1.077068 CCTCTCTCGCTCCCTCTGT 60.077 63.158 0.00 0.00 0.00 3.41
3013 3307 1.827789 CCCTCTCTCGCTCCCTCTG 60.828 68.421 0.00 0.00 0.00 3.35
3014 3308 1.994885 CTCCCTCTCTCGCTCCCTCT 61.995 65.000 0.00 0.00 0.00 3.69
3015 3309 1.528309 CTCCCTCTCTCGCTCCCTC 60.528 68.421 0.00 0.00 0.00 4.30
3016 3310 1.994885 CTCTCCCTCTCTCGCTCCCT 61.995 65.000 0.00 0.00 0.00 4.20
3017 3311 1.528309 CTCTCCCTCTCTCGCTCCC 60.528 68.421 0.00 0.00 0.00 4.30
3018 3312 0.535102 CTCTCTCCCTCTCTCGCTCC 60.535 65.000 0.00 0.00 0.00 4.70
3019 3313 0.180406 ACTCTCTCCCTCTCTCGCTC 59.820 60.000 0.00 0.00 0.00 5.03
3020 3314 0.107214 CACTCTCTCCCTCTCTCGCT 60.107 60.000 0.00 0.00 0.00 4.93
3021 3315 0.107410 TCACTCTCTCCCTCTCTCGC 60.107 60.000 0.00 0.00 0.00 5.03
3022 3316 1.953559 CTCACTCTCTCCCTCTCTCG 58.046 60.000 0.00 0.00 0.00 4.04
3023 3317 1.212935 AGCTCACTCTCTCCCTCTCTC 59.787 57.143 0.00 0.00 0.00 3.20
3024 3318 1.298953 AGCTCACTCTCTCCCTCTCT 58.701 55.000 0.00 0.00 0.00 3.10
3025 3319 2.487265 CCTAGCTCACTCTCTCCCTCTC 60.487 59.091 0.00 0.00 0.00 3.20
3026 3320 1.494721 CCTAGCTCACTCTCTCCCTCT 59.505 57.143 0.00 0.00 0.00 3.69
3027 3321 1.478654 CCCTAGCTCACTCTCTCCCTC 60.479 61.905 0.00 0.00 0.00 4.30
3028 3322 0.555769 CCCTAGCTCACTCTCTCCCT 59.444 60.000 0.00 0.00 0.00 4.20
3029 3323 0.260523 ACCCTAGCTCACTCTCTCCC 59.739 60.000 0.00 0.00 0.00 4.30
3030 3324 2.153034 AACCCTAGCTCACTCTCTCC 57.847 55.000 0.00 0.00 0.00 3.71
3031 3325 3.093057 TCAAACCCTAGCTCACTCTCTC 58.907 50.000 0.00 0.00 0.00 3.20
3032 3326 3.096092 CTCAAACCCTAGCTCACTCTCT 58.904 50.000 0.00 0.00 0.00 3.10
3033 3327 2.418060 GCTCAAACCCTAGCTCACTCTC 60.418 54.545 0.00 0.00 35.80 3.20
3034 3328 1.552792 GCTCAAACCCTAGCTCACTCT 59.447 52.381 0.00 0.00 35.80 3.24
3035 3329 1.552792 AGCTCAAACCCTAGCTCACTC 59.447 52.381 0.00 0.00 45.92 3.51
3036 3330 1.650528 AGCTCAAACCCTAGCTCACT 58.349 50.000 0.00 0.00 45.92 3.41
3041 3335 1.648467 CGGCAAGCTCAAACCCTAGC 61.648 60.000 0.00 0.00 39.08 3.42
3042 3336 1.648467 GCGGCAAGCTCAAACCCTAG 61.648 60.000 0.00 0.00 44.04 3.02
3043 3337 1.674322 GCGGCAAGCTCAAACCCTA 60.674 57.895 0.00 0.00 44.04 3.53
3044 3338 2.985847 GCGGCAAGCTCAAACCCT 60.986 61.111 0.00 0.00 44.04 4.34
3074 3368 1.038130 CACCACGGACCCCACAAAAA 61.038 55.000 0.00 0.00 0.00 1.94
3075 3369 1.454111 CACCACGGACCCCACAAAA 60.454 57.895 0.00 0.00 0.00 2.44
3076 3370 2.193517 CACCACGGACCCCACAAA 59.806 61.111 0.00 0.00 0.00 2.83
3077 3371 3.879885 CCACCACGGACCCCACAA 61.880 66.667 0.00 0.00 36.56 3.33
3097 3391 3.775654 GTCCTCCTGACAGGCCCG 61.776 72.222 17.33 7.38 43.85 6.13
3098 3392 3.775654 CGTCCTCCTGACAGGCCC 61.776 72.222 17.33 3.33 44.71 5.80
3099 3393 4.459089 GCGTCCTCCTGACAGGCC 62.459 72.222 17.33 0.00 44.71 5.19
3100 3394 4.803426 CGCGTCCTCCTGACAGGC 62.803 72.222 17.33 2.82 44.71 4.85
3101 3395 4.803426 GCGCGTCCTCCTGACAGG 62.803 72.222 15.99 15.99 44.71 4.00
3102 3396 4.803426 GGCGCGTCCTCCTGACAG 62.803 72.222 8.43 0.00 44.71 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.