>input_sequence_59872
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-----------------------------------------------------------CTATATAAGCATCAGAACACG
GCTTCCATATCAATCCA--TCTCACGGCGGCTTCTCGATCTTAATCATCTCGATCGGACCAAAAGAGGAAGCAGCCAACG
AGAGCGAGACATCAACTGAAACATCAGCCAGAGAAATGAAGACGGGCGTGATCGTCTTGTCCGTCGTGGTAGCGGTTTTT
GGGGTAGCAAGCGCTGTGCTGGGGTTCATCGCCGAGGGCACCAAGCTCACGGTAAGTACAC--------TAGCAGTCTGG
TAATCTAGTA----------------------------------------------------------------------
--------------------------------------------GTCGTAGGATCCATCTGAAGAAAACTAAAACGGACC
G-------GCGACG-CTTGTGGCGCGCAGCCGAATGACATCAAGATA---TCCAGGAACGAGTGCGTCTACCCTGACAAC
CCGGCATACGCACTGGGGCTAGTGGCGGCCCTCCTGCTGCTGGTGGCCCAGATCACCGCCTCCGCCGTCGGCGGCTGCTG
CGGCTGCTGCAAGCCTCGGGGCGCCGGCTTCTCCGGGTCCAAGAGCT---CCAGGTCCAAGAAGATCATTGGCGTTGGCG
CCCTCCTCTGCCTCGTCTCATGGTGAGCT-----TCC--------GTGCTCATAGTCCATGCATGAT-------------
----------------------------------------------AGGTGACGACGATCAAATCAACGGGCGAT--ATA
TGTTGTG------TATGCGTGTGCAGGATAGCGGCGTTGATCGCGGAGTGGTTCTTCTTGCAAGGTGCGTTCGGGAATGC
CCCCATGACGCGCAGAACTACACAGGGCCGGGGATGTACCTACCTCAAGGACGGCGTCTTCAGGATGGGGGCCATTCTGA
GCATCGTCGCCACCGTGCTCGGGATCATATCTTACATCGTGCTTTACGT------GGCC---GCGGCGGCGGCGGGTGCT
GGTACTACCGCTACCC---TGGGGACCGTGGCGGGACCGTCGGCGGCGGGCGAGACCAAGCACGACGGCATCGCGATCGG
CCAGCCTGCTGCCGCTCCACAACACTCAGAAGCTGTGTAG--GGCGTCCTCTTGCTTCTACCT-C--TCCGTCCCGATGT
ACTCTTGCTTTAGTGTTG-----CTTCCGTCGTAACTGCTATGTCTTCCG---------ATTG------ATTCGTGTCAT
TTCTGTTCCAGAGAGTTTTTGTTGTGCAAGTTTGGCGTGTTTGAGCTTTCAGATTGTGCACTGTGCGGTACCAACACTAT
CAT----A------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G271700
AAAGAATGAATTAGTAGCATCGGTATTACCCTTTAAGAAAATGGAAAAAATATATATATACTAATAAGTAGAAAAAAATA
AGAAGTTTTCTAAGAAAGAATGAATTAGTGGCATCGGTATTACCCCTTAAGAAAATGAAAAAAAAATCTAAAGCAAAAAA
AATTGCAAAGGATATACACATAAAATATGCAAGAAAAAATATATAATAATGTGATTTTCGCAAAAAATAAGTTTCCTACA
AAAGGAATGATTGAGTGGCATTTGTATTACCTTAAAGAAGAAAGGAAAATAAAACTAAAAC-AAAGTTTAAATAATAAAA
T-TTATAAGAATGAATGAATTAGTGGCATTGCTATTACCCTTTGAGAAGAAAGAAAAAACTCACACACAACTTTTCACTG
AAATTGTACTTTTATTAATATGCAAAGATTAATCATATAATAGTGCAATTTTGGCACATATTGTGCAATATTTGTGTGCA
TACAGTTATACTCACCCAACATCCCAAAGATAGACACAAAAGAAATAGAATAAAAACCAACTAATAGAGAAAAATGAAAA
TAAAAGTG------------AAAACAGAAAAAACAAATGAAGAAAGGGGAATGGCTGGGTCGCACCTGGTAATGGGCTTC
ATCTATTTAACACAACCAAACACCTTAGAGAACAAACCAGAAAAAAAATAACAGCACGAATCACAAAGCAAGATCAACGG
CACACAAAATTGACTGACCCAAAATAAAATTTCATGCAACTTACATGCAGCTAAATTGCAA-AA---AAGGGTCTCCTTT
GCTTAAGCCAGCAGCTGAGTCATCATCAGGCAGTCCAGGCTTGTCGTTAGATGATCTTTTTCGGATACGACTATGCATGA
TGGTCAGCCTTAACCTCGCGGTCCTCGCCAGCCAGTGCGAAACAATGTTTGTTCGTTTGCTTGTGGAC-AAAGAGTACGC
GTGATTGCACCTCGTCGTGGAAAACTAGTAGCATGCCGACGTGCACAGCGTGCTCCATACTATATAAGCATCAGAACACG
GCTTCCATATCAATCCA--TCTCACGGCGGCTTCTCGATCTTAATCATCTCGATCGGACCAAAAGAGGAAGCAGCCAACG
AGAGCGAGACATCAACTGAAACATCAGCCAGAGAAATGAAGACGGGCGTGATCGTCTTGTCCGTCGTGGTAGCGGTTTTT
GGGGTAGCAAGCGCTGTGCTGGGGTTCATCGCCGAGGGCACCAAGCTCACGGTAAGTACAC--------TAGCAGTCTGG
TAATCTAGTA----------------------------------------------------------------------
--------------------------------------------GTCGTAGGATCCATCTGAAGAAAACTAAAACGGACC
G-------GCGACG-CTTGTGGCGCGCAGCCGAATGACATCAAGATA---TCCAGGAACGAGTGCGTCTACCCTGACAAC
CCGGCATACGCACTGGGGCTAGTGGCGGCCCTCCTGCTGCTGGTGGCCCAGATCACCGCCTCCGCCGTCGGCGGCTGCTG
CGGCTGCTGCAAGCCTCGGGGCGCCGGCTTCTCCGGGTCCAAGAGCT---CCAGGTCCAAGAAGATCATTGGCGTTGGCG
CCCTCCTCTGCCTCGTCTCATGGTGAGCT-----TCC--------GTGCTCATAGTCCATGCATGAT-------------
----------------------------------------------AGGTGACGACGATCAAATCAACGGGCGAT--ATA
TGTTGTG------TATGCGTGTGCAGGATAGCGGCGTTGATCGCGGAGTGGTTCTTCTTGCAAGGTGCGTTCGGGAATGC
CCCCATGACGCGCAGAACTACACAGGGCCGGGGATGTACCTACCTCAAGGACGGCGTCTTCAGGATGGGGGCCATTCTGA
GCATCGTCGCCACCGTGCTCGGGATCATATCTTACATCGTGCTTTACGT------GGCC---GCGGCGGCGGCGGGTGCT
GGTACTACCGCTACCC---TGGGGACCGTGGCGGGACCGTCGGCGGCGGGCGAGACCAAGCACGACGGCATCGCGATCGG
CCAGCCTGCTGCCGCTCCACAACACTCAGAAGCTGTGTAG--GGCGTCCTCTTGCTTCTACCT-C--TCCGTCCCGATGT
ACTCTTGCTTTAGTGTTG-----CTTCCGTCGTAACTGCTATGTCTTCCG---------ATTG------ATTCGTGTCAT
TTCTGTTCCAGAGAGTTTTTGTTGTGCAAGTTTGGCGTGTTTGAGCTTTCAGATTGTGCACTGTGCGGTACCAACACTAT
CAT----ATTAATTTACTCGTGTTCGCTATTCTTCAGTCATTTGATT-TTTCTTTTGTACAGTCGATTTTTTTATTGGTT
TTGCTAAACATTATGTGCCTTAAATTTTTCTTGACGCCGTTCACATTAGAGCATCTACAGTTGGACTTAGCAAATCCGGC
CCCTCAAACGCCCATGGACGCGTCCGGGCGCGTCCGCGGGCACGGACCGGGCACTCCTCATATTTGCCATTCTGCATCCG
CGTATCTCATATCCAGCACCTTATATCCATACTACCCATGCACACGTTGATCTATCCTACGTGATCAGAC-GACGGACAA
TAAAATTGAGCTGCAAAGGAACACAAGATCGGCTGCAATCGGACAGAAACATACTTCACCATATCCAAAAGATCATAGTT
CGTCCATGGACAAGTTCATAAACTTCTACAACTAAAAACGATATAAACATTGAGGAGGA-GG---GGG----G-CC-GGA
ATCACCACTTCCTCGCCGGGCCTTTGCCCTTCCAGTCGCCAGCGTAGCTGTAGGTGCCTGC-GGCTGGTGGAGGGTCTTG
GTCGTCGGACGACGAGGTACAACTGTCGCCGCTGTCGGAGTCGGAGTTGGAGAGGACGACAAGCCCCTTCATCTGACGGA
CCGCCCTGTCCTGTTCCCG-CTTCAGCCTTGCCACCCGA-GCCTTCTTCGCGGGCCGGGAGGGTCCAGCTCCGGTGTCCA
CGCTACGCCGGTGCGGGAGGTGTGGCGACGCTCCAGATCCGGAGCTGCCATCGGTATCCACCTTGGACCGCTCCAGCGCA
CTGCGGAGGGCCATCTCCTCCTCGTAATCGAGCTCCAAGCCAGAGTCACTGCCGGAGCTGCTCATGGTGGTGGATGGGAT
CGGAACCGGAGAGGGAGAGGAGTGGACAGAGGGAGCGAGAGAGGGAGAGAGTGAGCTAGGGTTTGAGCTTGCCGCCCGGA
TTGGGGTTTTTTGTGGGGTCCGTGGTGGGCCGGGCCTGTCAGGAGGACGCGCCCGGGCGTGCC
>chr6B_24
-----------------------TATTACCCTTTAAGAAGAAAGAAAAATAATCTAAAACAAAAATCAAATTACTAACA-
-----TTTTCTAAGAAAGAATGAATTAGTGGCATTGCTATTACCCTTTAAGAAAT---AAATAAAATCTAAAATGCTATC
ATAGAAACTCCACACTGTAGACAAAAATTGAGGTTTTTTAGTATAGA------ATTTTTGCAAAAAATAAGTTTCCAACG
AAAGAATTAATTAGCA-GCATTGATATCACCTTAAAGAAAAAAGGGAAATGAAATAGAACTAAAATTTTAAATAATAAAT
TGTTATAAGAAAGAATTGGTTAGTAGCATTGGTATTACCACTT----------AAGAAACATGCACAGAACTTTGCACTG
AAATTGCAC-----TTAATACGCAAAGATTAATCATATAATAGTGCAATTCTGACACATATTCTATACTATTTGTGTGCA
TATATTTACACTCGCCCAACATCACAAAAATATCCACAAAATAAT-------AAAAACATGTAATAGAAGAAAATAAAAA
AGAAAAGAAAAAACAGATTAAAAACATAAAAAACAAAGGGAGAAAGGAGAA-GGCTACGTCGTACCTAGTAATCGGCTT-
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>chr1A_715
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--------ATCGACTGACCCGCAATAAAATTTCATGCCACTTACATACAGCTAAATGGCAATAA---AAGGGTCTCCTTT
GCTTAAACCAGCAGCTGGGTCATCATTAGGCATTCCAGGCTTGTCGTTAGATGATCC-TTTCGGATACGACTATGCATGA
TCGTGAGCCTTAACCTCGCGGTCCTCGCCAGCCAGTGCGAGACAATGTTTGTTCGTTTGCTTATGGACAAAAGAGTACGC
GTGATTGCACCT-GTCGTGGAAAACTAATAGAGCATGCGA--------CGTGCTCCGTATATA--AAGCATCAGAACACG
GCTTG--TATCCATCCATCTCACACGGCGGCTTCCCGATCTTAGTAATCTG----GGACCAAAAGAGGAAGCAGCCAACG
AGAGCGAGACATCAACTGAAACATCAGCGAGAGAAATGAAGACGGGCGTGATCATCTTGTCCGTCGTGGTAGCGGTTTTT
GGGGTGGCAAGCGCTGTGCTGGGGTTGATCGCCGAGGGCGCCAAGCTCACGGTAAGTACAT--------TAGTAGTCTCG
TAATCTAAGTACTCCGTCCGTCGGTTCGAAATTACTTGTCTCGAAAATAGATGTATCTAAAACTAAAATACGTCTAGATA
CATCTATTTCTACGACAAGTAATTCTGAACGGAGAGAGTAGTACGTAGTAGTATGCATCTGAAGAAAACTAAAACGGACC
G-------GCGACG-CTTGTGGCGCGCAGCCGAATGACATCAAGATA---TCCAGAAACGAGTGCGTGTACCCTGACAAC
CCGGCATACGCACTGGGGCTAGTGGCGGCCCTCCTGCTGCTGGTGGTCCAGATCACCGCCTCCGCCGTCGGCGGCTGCTG
CGGCTGCTGCAAGCCTCGGGGCGCCGGCTTCTCCGGGTCCAAGCGTT---CCAGGTCCAAGAGGGTCATTGGCCTTGGCG
CCCTCCTCTGCCTCGTCTCATGGTGAGCT-----TCC--------GTGCTCATAGTCCATACATGATGCATGTGTGGCAC
AGTGGAAGCCACTGGTAGGCATGTCGAGGGTTCGTTCGATCGATGGAGGTGACGACGATCAAATCAACGGGTGATGAATA
TGTTGTG------TATGTGTGTGCAGGATAGCAGCGTTGATCGCGGAGTGGTTCTTCTTGCAAGGTGCGTTCGGGAATGC
CCCCATGACCCGCAGAACTCCACAGGGCCAGGGATGTACCTACCTCAAGGACGGCGTCTTCAGGATGGGCGCCATTCTGA
GCATCCTCGCCACCGTGCTCGGGATCATATCTTACATCGTGCTTTACGT------GGCGATGGCGGCGGCGGCGGGTGCT
GGTACTACCGCTACCC---TGGGCGCCGTGGCGGGGCCGTCGTCGGCGGGCGAGACCAAGCACGACGGCATCGCGATCGG
CCAGCCTGCTGTCGCTCAACAGCAGTCGCAAGCGGTGTAGAAGGCGTACTCTTGCTTCTACCGTCTCCTTT---CGATGT
ACTCTTGGTTTAGTGTTGTCTTGCTTCCGTCACAACTGCCATGTCTTCCGGTTGTGGTAATTGATTCCGATTTGTGTCAT
TTCTGTTCCAGAGAGCTTTTGTTGTGCAAGTTTGGCGTGTTTGAGCTTTCAGATTGTGCAATGAGCGGTACCAACTCCAC
CATTTTAATTTATTTACTCGTGTTCGCCGTTCTTCGGTCATTTGATTCTTTTTTTGGTACAGTCGATTTTTTTATCATTT
TTGCTAAATATCATGTGCCTGAAATTTGTCGTGACCCCAGTCACTTTAG-------------------------------
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>chr1B_746
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---------------------------------------CTTGCATACAGCTAAATGGCAAAAAAAAAAGGGTCTCCTTT
GCTTAAACCAGCAGCTGGGTCATCATTGGGCATTCTAGGCTTGTCGTTAGATGATCG-TTTCGGATACGACTATGCATGA
TCGTGAGCCTTAACCTCGCGGTCCTCGCCAGCCAGTGCGAGACAATGTTTGTTCGTTTGCTTATGGAC-AAAGAGTACAC
GTGATTGCACCT-GCCGTGGAAAACTAATAGAGCATGCGA--------CGTGCTCCGTATATA---AGGATCAGAACACG
GCTTG--TATCCATCCATCTCACACGGCGGCTTCCCGATCTTAGTAATCTG----GGACCAAAAGAGGAAGCAGCCAACG
AGAGCGAGACATCAGCTGAAACATCAGCCAGAGAAATGAAAACTGGCGTGATCGTCTTGTCCGTCGTGGTAGCGGTTTTT
GGGGTGGCAAGCGCTGTGCTGGGGTTCATCGCCGAGGGCACCAAGCTCACGGTAACTACACTAGTTAACTAGTAGTCTGG
TAATCTA-------------------------------------------------------------------------
--------------------------------------------GTATTGGTATCCATCTGAAGAAAACTAAAACGAACC
G-------GCGGTG-TTTGTGGCGCGCAGCCGAATGACATCAAGATAATATCCAGGAACGAGTGCGTGTACCCTGACAAC
CCGGCATACACACTGGGGTTAGTAGCGGCCCTCCTGCTGCTGGTGGCCCAGATCACCGCCTCCGCCGTCGGCGGCTGCTG
CGGCTGTTGCAAGCCTCGGGGCGCCGGCTACTCCGGGTCCAAGAGCT---CCAGGTCCAAGAGGGTCATTGGCCTTGGCG
CCGTCCTCTGCCTCGTCTCATGGTGAGCT-----TCC--------GTGCTCATAGTCCATGCATGAT-------------
----------------------------------------------AGGTGACGACGATCAAATCAACGGGCGAT--ATA
TGTTGTG------TATGTGTGTGCAGGATAGCGGCGTTGATCGCGGAGTGGTTCTTCTTGCAAGGTGCGTTCGGGAATGC
CCCCATGACGCGCAGAATTCCACAGGGCCAGGGATGTACCTACCTCAAGGACGGCGTCTTCAGGATGGGGGCCATTCTGA
GCATCCTCGCCACCGTGCTCGGGATCATATCTTACATCGTGCTTTACGT------GGCGATGGCGGCGGCGTCGGGTGCT
GGTACTACCGCTACCC---TGGGGGCCGTGGCGGGGCCGTCGGCGGCGGGCGAGACCAAGCACGACGGGATCGCGATCGG
CCAGCCTGCTGCCGCTCAACAACCCTCACAAGCTGTGTAGAGGGCGTACTCTTGCTTCTACCGTATATCAGTCCCGTTGT
ACTCTTGCTTTAGTGTTG-----CTTCCGTCATAACTGCCATGTGTTCCGGTTGTGGTAATTG------ATTCGTCTCAT
TTCTGTTCCAGAGAGTTTTTGTTGTGCAAGTTTGGCGTGTTTGAGCTTTCAGATTGTGCAATGTGCGGTACCAACACCAT
CGTTTTAATTTATTTACTCGTGTTCGATATTCTTCAGTCATTTGATTCTTTTG-TGGTACAGTC-ATTTTTTTATCAGTT
TTGTTAAACATCATGTGCGTGAAATTTGTCGTGACCCCAGTCACATTAG-------------------------------
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>chr1D_1105
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-----GAGACATCGGCTCAAAGATTACTG-GAGAAATGGAGACGAGCGTGATCGTCCTGTCCGTCGTGGTAGGATTGCTC
GGGGTCGGAAGCGCCGTGCTGGGGTTCATCGCCGAGGGCACCAAGCTCGAGGTAAGTACACGCTCGTGTTCATCCATCCA
TC------------------------------------------------------------------------------
------------------------------------------------------CGATCTCAAAGAAACTGAGCTGACAT
CGGGATGCTT-GTG-CTTGCGGCGCGCAGCGGAATGACATCGGG---GTGTCCAAGACCGAGTGCGTGTACCCCGGCAAC
CCGGCGTTCGCGCTGGGGCTGGTCGCGGCGCTCCTGCTGCTGGCGGCCCAGATCACCGTCTCGGCCGCCGGCCGCTGCTG
CGGCTGCTGCAAGCCCCGGGGCGCCGCCTTCTCCGCGTCCAGGCGGAA------------------------CATCGGCG
TCGTCTTCGCCGTCCTCTCATGGTGAGCTCAGCTTCCT-----------TCCGATTCGATCCAGGCGACGAC--------
--------------------------------------------------GACGACC---------------GATGAATA
TGCTGTG------TGTGTCCGTGCAGGGTGGCGACGGTGATCGCGGAGATCTACTTCGTGCAGGGCGCGGCGTGGAACGC
GCCGGTGACGCGCGAGGTCAACAC------GGGGTGCTACTTCGTCAGGGACGGCGTGTTCAGGAGGGCGGCCATCCTGA
GCATCATCGCAACCGTGCTCGGGATCAAGTCCTACTTCTTGCTTCGCGCCGCTGCGGCCACGGCGGCGGCGGCGGCTGCT
GCTGTGCCAGGATACC---CGGGGGCCGTGGCGGGGCCGTCGTCGGCGGGCGAGCCCAAGCCCGACGGGATCGCGATGGG
TCACCCTGCTCCG-------------------------------------------------------------------
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>chr1B_1105
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-----GAGACATCGGCTCAAAGATTGCTG-GAGAAATGGAGACGAGCGTGATCGTCGTGTCCGTCGTGGTAGGATTTTTT
GGGGTCGCAAGCGCCGTGCTGGGGTTCATCGCCGAGGGCACCAAGCTCGAGGTAAGCACACGCTTGTGTTCATCCATCTA
A-------------------------------------------------------------------------------
--------------------------------------------------------ATCTCAAAGAAACTGAGCTGACAT
CGGGATGCTT-GTG-GTTGCGACGCGCAGCCGAATGACATCTCG---ATGTCCAGGACCGAGTGCGTGTACCCCGCCAAC
CCGGCGTTCGCGCTGGGGCTGGTGGCGGCGCTCCTGCTGCTGGTGGCCCAGATCACCGTCTCGGCCGCCGGCCGCTGCTG
CGGCTGCTGCAAGCCCCGGGGCGCCGCCTTCTCCGCGTCCAGGCGGAA------------------------CATCGGCG
TCGTCTTCGCCGCCCTCTCATGGTGAGCT-----TCCTTCAGCGCGTGCTCCGATTCGATCCAGGCGACGAC--------
--------------------------------------------------GGCGATGACCAATTCAACGGGGGAT--GAA
TATGCTGTGTATATATGCGCGTGCAGGGTGGCGACGGTGATCGCGGAGATCTACTTCGTGCAGGGCGCGGCGTGGAACGC
GCCCGTGACGCGCGAGGTCAACAT------GGGGTGCTACTTCGTCAAGGACGGCGTGTTCAGGAGGGCGGCCATCCTGA
GCATCATCGCCACCGTGCTCGGGATCAAATCCTACTTCCTGCTTCGCGCCGCTGCAGCCACGGCCACGGCGGCGGCTGCT
GCA---CCAGGATACC---CGGGGGCCGTGGCGGGGCCGTCAGCGGCGGGCGAGCCCAAGCCCGACGGCATCGCGATGGG
CCACCCTGCTCCG-------------------------------------------------------------------
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>chr1D_1129
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-----------------------------AGAGAAATGAAGATTACCGTGATCGTCTTGTCCGTCGTGGTAGCATTGTTT
GGGGTCGCAAGTGCCGTCCTGGGGTTCATCGCCGAGGGCACCAAGCTCACGGTAAGCATGTACA----------------
----CTGGTA----------------------------------------------------------------------
--------------------------------------------GTGGCTCCGTCCATCTCAAGCAAACTGAACTGACCA
GCGCGCTTGCGGTG-CTCGTGGCGCGCAGCGGAATGACATTGAG---GTGTACAGCAACGAGTGCGTGTACCCTGACAAC
CCGGCATACGCGCTGGGGTTACTGGCGGCCCTCCTGCTACTGTTGGCCCAGATCACCGCCTCGGCCGTCGGCGGTTGCTG
CGGCCGCTGCATGCCTCGGGGCGCCGGCTTCTCCAGGTCCAAGGCCGTTGCCAAGTCCAAGCGGGC------CATTGGCG
CCGCCCTCTGCGTCCTCTCATGGTGAGCTGAGCTAAGCTTC---CGTGCTCATAGTCCATCCATTCCTGAC---------
----------------AGGCATGTCGAGGGTTCGACCGA-----------GGTGACGGCCAATCCAACGGGCGAT--GAA
CATGCTGGCGT--TGAGTGTGTGCAGGATAATGGCGTTGATCGCGGAGCGGTTCTTCTTGGTAGGTGCGGCGGCGAACAT
CCCCATGACGCGCGAAACTAGCCAGGGCCGGGGGTGTCACGCCGTCAAGGACGGCGTCTTCATGATGGGGGCCATTCTCA
GCATCGTCGCCACCGTGCTCGGGATCGTATCTTACATCATGCTTTA------------C---GCGGCGGCGGCTGGTGCT
ACTACTACC---------ATGGGGGCCGTGGCGGGGCCGTCGTCGGCAGGCGAGATCAGGCTTGACGGGATCGCGATCGG
CCACCCTGTTGCTGCTCAACAACACGCACAAGCTGTGTAGAGGGCCTACTCTTGCTTCTACTCCC--TCCGTCC------
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>chr1B_1129
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-----------------------------AGAGAAATGAAGATTACCGTGATCGTCTTGTCTGTGGTGGTAGCATTGTTT
GGGGTCGCAAGTGCCGTCCTGGGGTTCATCGCCGAGGGCACCAAGCTCACGGTACGTATGTGCA----------------
----CTGGTA----------------------------------------------------------------------
--------------------------------------------GTGGCTCCGTCCATCTCAAGCAAACTGAACTGACCC
GCGCGCTTGCGATG-CTCGTGGCGCGCAGCGGAATGACATTGAG---GTGTACAGCAACGAGTGCGTGTACCCTGACAAC
CCGGCGTACGCACTGGGGTTAGTGGCGGCCCTCCTGCTGCTGGTGGCCCAGATCACCGCCTCGGCCGTCGGCGGTTGCTG
CGGCCGCTGCATGCCTCGGGGCGCCGGCTTCTCCGGGTCCAAGCCCGTTGCCAAGTCCAAGCGGGC------CACCGGCG
CCGCCCTCTGCGTCCTCTCATGGTGAGCTAAGCTTCCGTGCTCAACTGCTCATAGCCCATCCATTCCTGAC---------
----------------ATGCATGTCGAGGGTTCGATCGA-----------GGTGACGGCCAATCCAATGGGCGAT--GAA
CATGCTGCCGT--TGAGTGTGTGCAGGATAATGGCGTTGATCGCGGAGCGGTTCTTCTTGCTAGGTGCGGCGAGGAACAT
CCCCATGACGCGCGAAACTAGCCAGGGCCGGGGCTGTCACCCCGTCAAGGACGGCGTCTTCATGATGGGGGCCGTTCTTA
GCATCGTCGCCACCGTGCTCGGGATCATATCTTACATCATGCTTTA------------C---GCGGCGGCGGCAGGTGCT
AATACTACTACTAGTACAATGAGGGCCGTGGCGGGCCCGTCGCCGGCAGGCGAGATCAACCATGACGGGATCGCGATCGG
CCACCCTGTTGCCGCTCAACAACACGCACAAGCTGTGTAGAGGGCGTACTCTTGCTTCTACCATCT--------------
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>chr1A_1129
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-----------------------------AGAGAAATGAAGATTACCGTGATCGTCTTGTGTGTCGTGGTAGCGTTGTTT
GGGGTCGCAAGTGCCGTCCTGGGGTCCATCGCCGAGGGCACCAAGCTCACGGTAAGTATGTAGAA---------------
-----TGGTA----------------------------------------------------------------------
--------------------------------------------GTGGCTCCGTCCATCTCAAGCAAACTGAACTGATCC
GCGCGCTTGCGATGCTTCGTGGCGCGCAGCGGAATGACATTGAG---GTGTACAGCAACGAGTGCGTGTACCCTGACAAC
CCGGCATACGCACTGGCGCTGCTGGCGGCCCTCCTGCTGCTGTTGGCCCAGATCACCGCCTCGACCGTCGGCGGTTGCTG
CGGCCGCTGCAAGCCCCGGGGCGCCGGCTTCTCCGGGTCCAAGCCCGTTGCCAAGTCCAAGCGGGC------CACTGGCG
CCGCCCTCTGCGTCCTCTCATGGTGAGCT-----TCC--------GTTCTCATAAG------------------------
----------------AGGCATGTCGAGGATTCGATCGA-----------GCTGACG-CCAATTCAAC-GGCGAT--GGA
TATGTTGCGAAT-----TGTGTGCAGGATAATGGCGTTGATCGCGGAGCGGTTCTTCTTGGTAGGTGCGGCGATGAACAT
CCCCATGACGCGCGAAACTAGCCAGGGCCGGGGGTGTCACGCCGTCAATGACGGCGTCTTCATGATGGGGGCTATTCTGA
GCATCGTCGCCACCGTGTTCGGGATCATATCTTATATCATGCTTTA------------C---GCGGCGGCGGCTGGTGCT
AATACTACC---------ATGGGGGCCGTGGCGGGGCCGTCGTCGGCAGGCGAGATCAGGCTTGACGGGATCGCGATCGG
CCACCCTGTTGCCGCTCAACAACACGCGCAAGCTGTGTAGAGGGCGTACTCTTGCTTCTACC------------------
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>chr2A_2245
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-------------------------------------------CATTAGAGCATCTACAGCCGAACTTAGCAAA-CCGGC
CCCTCAAACACACACGGACGCGCTCAGACGCGTCCGTGGGCACTGACCGGGCACTCTTCATATTTGCCATTCCACATCCG
CGTATCTCATATCCGGCGTCTTATATTCATACTACCCGTGCACACGGTGATCTATCCTACATGATTAGACTGACGGAAAA
C-AAAATAAGCTGCAAAGGAATATAAGATCAGCTGCAAACGGA--TAAACATACTTCACCACGTCTATAAGATCATAGTT
CGTCCACAGACAAGTTCACAAACTTCTACAACTT-AAACTATATAAACATTGAGGAGGA-GG---GGG----G-CC--GA
ATCACCACTTCCTCGTCGGGCCTTTGCCCTTCCGGTCGCCGGCGCAGCTGTAGGCGTCCGC-GGCTGGTGGAGGGTCTTG
ATCGTCGGACGACGAGGTGCAGCTGTCACCGCCATCGGAGTCGGAGTCGGAAAGGACGATGAGCCCCTTCATCCGATGGA
CCGCCCTGTTCTGCTCCCA-CTTCAGCCTTGCCACCCGA-GCCTTCT---------------------------------
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>chr7D_2246
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--------------------------------------------ATTAGAGCATCTACAGTCAGACTTGATAAATCCGGC
CCTTCAAATGCCCGCGAACGCGCCCGAGCGCGTCCGCGGGGACTGACCGGGCACCCCTCATATTTGTCATTCTGCATCCG
CATATCTCATATCCGGCGCCTTATATCCATACTACTCATACATACATTGATCTATCCTACGTGATCAAAC-GACAAACAA
CAAAATTAAGCTGCAAAGAAACACAAGATCGGCTGCAATCGGACA-TAACATACTTCACCACATCCAAAAGATCATAGTT
CGTCCACGGACAAGTTCATAAACTTCTATAACTAGAAACGATATAAACATTGAGGAGGA-GG---GGG----GGCC-AGA
ATCACCACTTCCTCGTCGGGCCTTTGCCCTTCCGGTCGTCGGCGCAGCTGTGGGCGTCCGC-GGCTGGTGGAGGGTCTTG
GTTGTCATACGACGAGGTGCAGCTGTCGCTGCCGTCGGAGTCAGAGTTGGAGAGGACGATGAGCCCCTTCATCCGAC-GA
CCGCCCTATCCTGCTCCCG-CTTCAGCCTTGCCACCCGA-GCCTTCTTCG------------------------------
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---------------------------------------------------------------
>chr3B_2246
ATTAAG--------------------------------------------------------------------------
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-------------------------------------------------AGCATCCACAACCGGAATTGGCAAATCCGGT
CCCTTGAACGCCTGCGGACGCGTCCGGGCACGTTTGCGGGCACTGACCGGGCACCTCTTATATTTGCCCTTCTGCATCCG
CGTATTTCATATCCGGCATCTTATATCCATACTACCCATGCACACGTTGATCTATCCTACGTGATCAAAC-GACGGACAA
CAAAATTGAGCTGCAAAGGAACACAAGATCGGATGCAAAAGGACA-TAACATACTTCACCACATCCAAAAGATCATAGTT
CGTCCACAGACAAGTTCATAAACTTCTACAACTAAAAACGATATAAACATTGAGGAGGG-GG---AGG----GGGAGGGA
ATCACCACTTCCTCGCTGGGCCTTTGCCCTTCCAGTCGTCAGCGCAGCTGTAGGCGTTCGC-GATCAGTGGAGGGTCTCG
GTCGACGGACGACGAGGTGCAGCTCTCGCCGCCGTCGGAGTCGGAGTAGGAGAGGACGGTGAGCCCCTTCATCTGATGGA
CCGCCCTGTCATGCTCCTG-CTTCAATCTTGCCATCCAA-CCTTCTCCGC------------------------------
--------------------------------------------------------------------------------
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>chr6B_2246
ATTAAG--------------------------------------------------------------------------
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-------------------------------------------------AGCATCTACAGCCGGACTTGGCAAATCCGGC
CCCTCAAACGTTGGCGGACACGTTCGGGCGCGTCCGC-GGCACTGACCGGGCACCCCTCATATTTTCCATTC-GCATCCG
CATATCTCATATCCGGCGCCTTATATCCAAGCTACCCAGGCACATGTTGATCTATCATACGTGATCAAAT-GACAGAAAA
CAAAATGAATCTGCAAAGGAACACAAGATCGGCTGCAAACGAACA-TAACATACTTCACCACATCCAAAAGATCATAGTT
CGCCCACGGACAAGTTCTTAAACTTCTACAACTAAAAC-GATATAAACATTGAGGA-----G---GAGGGGAG-CC-GGA
ATCACCACTTCCTCGCCGGTCCTTTGCCCTTCTGGTCACCGGCGCAATTGTTGGCATCTGC-GGCTAGTGGAGGGTCTTG
GTCGTCGGACGACGAGCTGCAGCTGTGGCCGCCGTCAGAGTCGGAGTCCAT-AGGATGATGAGCCCCTTCATCTAACGGA
CCGCCCTGTCCTGCTCCCG-CTTCAGCCTTACCACCCGA-GCCTTCTTCGC-----------------------------
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>chr3A_2247
--------------------------------------------------------------------------------
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---------------------------------------------TTAGAGCATCTATAGCCGGACTTGGCAAATCCGGC
CCCTCAAACGCCCGTGGACGCGCCCGGGCGCGTTCGTGGGTACTGACCGGGCATCCTTCATATTTGTCATTCTGCATCCG
CGTATCTCATATCCGGCGCCTTATATCCATACTATCCATGCACACGTTGATCTATCCTGCATGATCAAAC-AAGGG---A
CAACATTGAGCTTCAAAGGAACACAAGATCGGCTGCAAACGGACA-TAACATACTTCACCACATCCAAAAGATCATAGTT
CATCCACGGACAAGTTCA-AAACTTCTACAACTAAAAATGATATAAACATTAAGGAGGAGGG---GGG----G-TC-GGA
ATCACCACTTCCTCGCCGGGCCTTCGCCCTTCCGGTCGCCGGCGTAGCTGTAGGCGTCCGTGGGCTGGCGGAGGGTCTTG
GTCGTCGGACGATGAGAAGCAGCTGTCGTCGCCGTCGGAGTCGGAATCGGAGAGGACGATGAGCCCCTTCATCCGCCGGA
CTGCCCTGTCCTGCTCCCG-CTTGAGCCTTCTTCGCCGATGCCTCCTTCGC-----------------------------
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>chr3A_2247
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---------------------------------------------TTAGAGGATCTATAGCTAGACTTGGCAAATCCGGC
CCCTCAAACGCCCGCGGACACGGCCGGGCGCGTCCGCGGGCACTGGCCAGACACCCCTTATATTTGTCATTCTGCATCCA
CGTATCTCATATCCGGCGTCTTATATCCATACTATCCATGCACACGTTGATCTATTCTACGTGATCAGGC-GACGAACAA
CAAAATTAAGCTGTAAAGGAACACAAGATCGGCTGTAACGG---ATAAACACACTTCACAACATCCAAAAGATCATAGTT
CGTCCACGGACAAGTTCATAAACTTCTACAACTAAAAC-GATATAAACATTGAGGAGAAG-G---GGG----G-CC-GGA
ATCATCATTTCCTCGCCGGGCCTTTGCCCTTTCGGTCGTCGGCGCAGCTGTACGCATCCGC-GGCTGGTGGAGGGTCTTG
CTCGTCGGACGACGAGGTGTACCCATCGCCGCCGTCGGAGTCGGGGTTGGAGAGGACGATGACCCCTTTCATCCGACGGA
CCGCCCTGTCCTGCTCCCCCCTTCAGCCTTGCCACCCGA-GCCTTC----------------------------------
--------------------------------------------------------------------------------
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>chr4D_2247
--------------------------------------------------------------------------------
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---------------------------------------------TTAGAGCATATACAACCGGACTTGACAAATCCGGC
CCCTCAAACGCCCGCGGACGCGCCCGGGCGCATTCGCGGGCACTGGCCGGGCACCAATCATATTTGTCATTCTGCATCCG
CGTATCTCATATCTGGCGTCTTATATCAATATTACCCATGCAAACGTTGATCTATCCTACATGATCAGAT-GACGGACAA
CAAAATTGAGCTGCAAAGGAACATAAGATCGACTGCAAACGGACATAAGCATACTTCACCACATCCAAAAGATCATAGTT
CGTCCACGGACAAGTTCATAAACTTCTACAACTAAAAC-GATATAAACATTGAGGA-----G---GGG----G-CC-GGA
ATCACCACTTCCTTGCCGAGCCTTTACCCTTCCGGTCGACGGCGCAGCTGTAGGCGTCCGC-GGCTGGTGGAGGGTCTTG
GTCGCCGGACGATGAGGTGTAGTTGTCGTTGCCGTCGGAGTCGGAGTCAGAGAGGACGATGAGCCCCTTCATCCGCCGGA
CCGCCCTGTCCTGCTCCAG-CTCCAGCCTTGCCACCGGA-GGCTT-----------------------------------
--------------------------------------------------------------------------------
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>chr7D_2249
--------------------------------------------------------------------------------
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-----------------------------------------------AGAGCATCTACAGCCGGATTTGGCAAATTCGGC
CCCTCAAACGCCAGCGGACACGCCCGGACGCGTCCACGGGCACTGACCGGGCATCCCTCATATTTGCCATTCTGCATCTA
CGTATCTCATATCCGGCGCTTTGTATCCATACTACCCATGCAAACGTTGATCTATCCTACGTGATCAAAC-GATGGACAA
TAAAAATCAGCTGCAAAGGAACACATGATCGACTGCAAACGAACATTAACATACTTCACCACATCCAAAAGATCATAGTT
CGTCCACGGATAAGTTCATAAACTTCTACAACTAAAAACGGTATAAACATTGAGGAGGAGGG---TGG----T-CC-GGA
ATCACCACTTACTCGTCGGACCTTTCCCCTTCCGGTCGCCGGCGCACCTGTAGGCGTCCGC-GGCTGGTGGAGTGTCTTG
GTCGTCAGACGAGGAGGTGTAGCTGTCGCCGCCGTCGGAGTTGGAGTCGGAGTGAACGATGAACCCCTTCATCCAACGGA
CTGCCCTGTCCTGCTCCCG-CTCCACCCTTACCACCCGA-GCCTTCTCCGC-----------------------------
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>chr3B_2249
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-----------------------------------------------AGAGCATCTACCGCCGGAGTTGGCAAATCCAGC
CCCTCAAACACCCGCGGACACGCTCGGGCGCGTCCGCAGGCACTGACCGAGCACCCCTCATATTTGCCACTCTGCATCCG
CGTATCTCATATCCGATGCCTTATATCCATACTACACATGCAAACCTTGATCTATCCTACGTGATCAAAT-GACGGACAA
CAAAAATTGGCTGCAAAGGAACACAAGATCAGCTGCAAACTGACATTAACATACTTCACCATATCCTAAAGATCATACTT
TGTCCCCGGACAAGTTCATAAACTTCTACAACTAAAACAGATATAAACATTGAGGAGGAGGTGGAGGG----G-CC-GGA
ATCACCACTTCCTCGCCGGGCCTTTGCCCTTCCGGTCGCCGGCGCAGCTGTAAGCATCTGC-GGCTGGTGGAGTGTCTTG
GTCGTAGGATGAGGAGGTGCAGCTGTCGCCGCCGTCGGAGTCGGAGTCGAAGAGGACTATGAGCCCCTTCATCCGACGGA
CCACCCTGTCTTGCTCCCG-CTTCAACCTTGGCACCCGA-ACCTTCTACGC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>SNPs
-SSS-SSSSSSSSSSSSSSSSSS----------------S-SS------SS--S--S-SSSS--SSSSS-SS-SS--SSS
SSSSS-----------------------------S-S--------S--------SSSS---S----------SSSSS-SS
-SSSSS-SSSS-S-SSSSSSSS---S--SS-S-SSSSSSSS----SSSSSSSS-----S-----------------S--S
----S-S-S---SSSSS-----SS---S-----------S-----S----S---SSS--SS----S-------------S
-----------S----SSS-----S------S-------SS--SSSSSSSSSS--S----SSS----S------S-----
------S--SSSSS------S-----------------------------S--S--------S-SS-S------------
--S-S---S----S---------S----S---SS-------S--SSSSSSSS----S--SS-------SS-----S----
SS---SSS------------------S----------S-S-------S---S----SS----S----S-----S-----S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--S---------SS---------------S--------S---------S-----------------------
------S----------S--------S-----S-----------------------SS----------------------
-S--S-----------------------------------S---------------------S-----------------
------------S--------------S---SSSSSSSSSSSSSSSSS--------S--SSSSSS---------------
----SSS----S---------S------------S--------S-S----SSSSS-------------------------
--------------------------------------------------------------------------------
-----S------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
----------------------------------------------S----S----------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-S--------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S----------S--------------------------------------------
-----------------S----------S------------------S--------------S-----------------
-------------------------------S-------S----------------------------------------
------------------------------------------------------------S----------------S--
----------S----------------------------------------S---S-------------------SS---
-----------S--------S------S--S----S--SS----------------------------------------
-------------------------------------------S------------------------------------
--------------S-----------------------------------------------------------------
---------------------------------------------S----------------------------------
------S-------------------------------------------------------------------------
------------------------------------------------------S-S-----------------------
------------------S--S----------S--------------------------SS-------------------
-------------S-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1003
--------------------------------------------------------------------------------
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-----------------------ACTAGTAGCATGCCGACGTG-------------------------------------
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---------------------------------------------------------------
>reverse_3222
--------------------------------------------------------------------------------
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---------------------TCGTAATCGAGCTCCAAGCC---------------------------------------
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---------------------------------------------------------------
