Multiple sequence alignment - TraesCS1D01G269000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G269000 chr1D 100.000 3499 0 0 1 3499 364697962 364694464 0.000000e+00 6462.0
1 TraesCS1D01G269000 chr1A 91.238 1963 91 26 953 2887 463523333 463521424 0.000000e+00 2597.0
2 TraesCS1D01G269000 chr1A 90.075 1471 71 35 1818 3261 463522478 463521056 0.000000e+00 1838.0
3 TraesCS1D01G269000 chr1A 78.626 393 49 15 583 958 463523733 463523359 9.770000e-56 228.0
4 TraesCS1D01G269000 chr1A 90.411 146 14 0 346 491 22682994 22683139 3.560000e-45 193.0
5 TraesCS1D01G269000 chr1B 89.258 1145 71 20 685 1785 488038996 488037860 0.000000e+00 1386.0
6 TraesCS1D01G269000 chr1B 94.469 904 36 5 1818 2720 488037855 488036965 0.000000e+00 1380.0
7 TraesCS1D01G269000 chr1B 91.195 318 21 3 3107 3424 488036369 488036059 3.230000e-115 425.0
8 TraesCS1D01G269000 chr1B 81.501 373 22 27 2755 3104 488036959 488036611 2.680000e-66 263.0
9 TraesCS1D01G269000 chr3B 85.484 434 30 13 86 489 444678926 444678496 4.180000e-114 422.0
10 TraesCS1D01G269000 chr4D 87.193 367 28 9 142 490 65080240 65080605 1.960000e-107 399.0
11 TraesCS1D01G269000 chr2B 85.360 403 30 14 98 484 423097074 423097463 1.180000e-104 390.0
12 TraesCS1D01G269000 chr2B 87.330 221 28 0 1517 1737 444499958 444500178 1.610000e-63 254.0
13 TraesCS1D01G269000 chr2B 88.889 54 5 1 3444 3496 559414395 559414342 8.110000e-07 65.8
14 TraesCS1D01G269000 chr5D 85.827 381 25 12 138 491 393449101 393449479 9.170000e-101 377.0
15 TraesCS1D01G269000 chr5D 93.750 48 3 0 133 180 393449065 393449112 4.840000e-09 73.1
16 TraesCS1D01G269000 chr2D 78.424 533 91 18 1517 2037 374073542 374074062 3.370000e-85 326.0
17 TraesCS1D01G269000 chr2D 91.946 149 11 1 346 493 2598390 2598242 1.270000e-49 207.0
18 TraesCS1D01G269000 chr2D 80.169 237 45 2 1198 1433 374073206 374073441 3.590000e-40 176.0
19 TraesCS1D01G269000 chr7B 88.281 256 22 5 235 488 566733569 566733818 2.040000e-77 300.0
20 TraesCS1D01G269000 chr2A 86.036 222 29 2 1517 1737 507030091 507030311 1.620000e-58 237.0
21 TraesCS1D01G269000 chr2A 87.500 56 6 1 3445 3499 428131530 428131475 2.920000e-06 63.9
22 TraesCS1D01G269000 chr2A 100.000 28 0 0 3469 3496 619763294 619763267 6.000000e-03 52.8
23 TraesCS1D01G269000 chr3D 92.617 149 10 1 346 493 303582458 303582606 2.740000e-51 213.0
24 TraesCS1D01G269000 chr6A 84.211 209 33 0 1529 1737 153679413 153679205 1.650000e-48 204.0
25 TraesCS1D01G269000 chr7D 91.216 148 13 0 346 493 568644455 568644308 5.920000e-48 202.0
26 TraesCS1D01G269000 chr6D 82.569 218 38 0 1517 1734 126429693 126429910 3.560000e-45 193.0
27 TraesCS1D01G269000 chr6B 82.110 218 39 0 1517 1734 224865991 224866208 1.660000e-43 187.0
28 TraesCS1D01G269000 chr6B 90.826 109 6 4 73 180 66030 65925 3.640000e-30 143.0
29 TraesCS1D01G269000 chr6B 89.189 74 8 0 1 74 66174 66101 3.720000e-15 93.5
30 TraesCS1D01G269000 chr7A 88.462 52 5 1 3445 3495 89961387 89961438 1.050000e-05 62.1
31 TraesCS1D01G269000 chr7A 85.455 55 8 0 3445 3499 611271199 611271253 1.360000e-04 58.4
32 TraesCS1D01G269000 chr5A 85.714 56 7 1 3445 3499 700312417 700312472 1.360000e-04 58.4
33 TraesCS1D01G269000 chrUn 96.875 32 1 0 3465 3496 134378812 134378843 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G269000 chr1D 364694464 364697962 3498 True 6462.000000 6462 100.000000 1 3499 1 chr1D.!!$R1 3498
1 TraesCS1D01G269000 chr1A 463521056 463523733 2677 True 1554.333333 2597 86.646333 583 3261 3 chr1A.!!$R1 2678
2 TraesCS1D01G269000 chr1B 488036059 488038996 2937 True 863.500000 1386 89.105750 685 3424 4 chr1B.!!$R1 2739
3 TraesCS1D01G269000 chr2D 374073206 374074062 856 False 251.000000 326 79.296500 1198 2037 2 chr2D.!!$F1 839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.028374 GTCTCTCGAACGGAGCTAGC 59.972 60.0 6.62 6.62 42.82 3.42 F
173 174 0.039978 ATCGATTCGCACGGAGCTAG 60.040 55.0 0.00 0.00 42.61 3.42 F
543 544 0.112995 ATCAAGGGGCAAAGTGAGCA 59.887 50.0 0.00 0.00 0.00 4.26 F
1530 1613 0.107945 GTTCTCAGGGGCTGCTACAG 60.108 60.0 0.00 0.00 34.12 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1581 0.036577 CCCCTGAGAACAGAGTGCAG 60.037 60.0 0.0 0.0 46.03 4.41 R
1530 1613 0.464554 GCAGGTAGATGCCCAGTTCC 60.465 60.0 0.0 0.0 40.43 3.62 R
2345 2449 0.532862 CAACAGGCACGAACAGGTCT 60.533 55.0 0.0 0.0 0.00 3.85 R
2729 2839 0.031857 CTAGGGCACGCTCATCTCTG 59.968 60.0 0.0 0.0 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.871077 CGTTGGCGGGAGTTTAACC 59.129 57.895 0.00 0.00 0.00 2.85
33 34 4.629779 CGGGAGTTTAACCGCCAT 57.370 55.556 6.87 0.00 43.96 4.40
34 35 2.390427 CGGGAGTTTAACCGCCATC 58.610 57.895 6.87 0.00 43.96 3.51
35 36 1.426041 CGGGAGTTTAACCGCCATCG 61.426 60.000 6.87 0.00 43.96 3.84
47 48 0.870393 CGCCATCGGAATCTTCATGG 59.130 55.000 0.00 5.37 39.15 3.66
48 49 1.811558 CGCCATCGGAATCTTCATGGT 60.812 52.381 9.68 0.00 38.49 3.55
49 50 1.876156 GCCATCGGAATCTTCATGGTC 59.124 52.381 9.68 1.98 38.49 4.02
50 51 2.138320 CCATCGGAATCTTCATGGTCG 58.862 52.381 0.00 0.00 32.49 4.79
51 52 1.528586 CATCGGAATCTTCATGGTCGC 59.471 52.381 0.00 0.00 0.00 5.19
52 53 0.824109 TCGGAATCTTCATGGTCGCT 59.176 50.000 0.00 0.00 0.00 4.93
53 54 1.202417 TCGGAATCTTCATGGTCGCTC 60.202 52.381 0.00 0.00 0.00 5.03
54 55 1.587547 GGAATCTTCATGGTCGCTCC 58.412 55.000 0.00 0.00 0.00 4.70
55 56 1.587547 GAATCTTCATGGTCGCTCCC 58.412 55.000 0.00 0.00 34.77 4.30
56 57 0.179073 AATCTTCATGGTCGCTCCCG 60.179 55.000 0.00 0.00 34.77 5.14
57 58 1.330655 ATCTTCATGGTCGCTCCCGT 61.331 55.000 0.00 0.00 35.54 5.28
58 59 1.519455 CTTCATGGTCGCTCCCGTC 60.519 63.158 0.00 0.00 35.54 4.79
59 60 2.907897 CTTCATGGTCGCTCCCGTCC 62.908 65.000 0.00 0.00 41.98 4.79
62 63 4.988716 TGGTCGCTCCCGTCCACT 62.989 66.667 0.00 0.00 45.34 4.00
63 64 4.131088 GGTCGCTCCCGTCCACTC 62.131 72.222 0.00 0.00 41.40 3.51
64 65 4.477975 GTCGCTCCCGTCCACTCG 62.478 72.222 0.00 0.00 35.54 4.18
66 67 4.477975 CGCTCCCGTCCACTCGTC 62.478 72.222 0.00 0.00 0.00 4.20
67 68 3.063084 GCTCCCGTCCACTCGTCT 61.063 66.667 0.00 0.00 0.00 4.18
68 69 3.053849 GCTCCCGTCCACTCGTCTC 62.054 68.421 0.00 0.00 0.00 3.36
69 70 2.360852 TCCCGTCCACTCGTCTCC 60.361 66.667 0.00 0.00 0.00 3.71
70 71 2.675423 CCCGTCCACTCGTCTCCA 60.675 66.667 0.00 0.00 0.00 3.86
71 72 2.273179 CCCGTCCACTCGTCTCCAA 61.273 63.158 0.00 0.00 0.00 3.53
72 73 1.080705 CCGTCCACTCGTCTCCAAC 60.081 63.158 0.00 0.00 0.00 3.77
129 130 3.812019 GCTCGCCCGTCTCTCGAA 61.812 66.667 0.00 0.00 42.86 3.71
130 131 2.100603 CTCGCCCGTCTCTCGAAC 59.899 66.667 0.00 0.00 42.86 3.95
131 132 3.720106 CTCGCCCGTCTCTCGAACG 62.720 68.421 1.16 1.16 42.86 3.95
136 137 3.179481 CGTCTCTCGAACGGAGCT 58.821 61.111 0.16 0.00 42.82 4.09
137 138 2.381109 CGTCTCTCGAACGGAGCTA 58.619 57.895 0.16 0.00 42.82 3.32
138 139 0.302288 CGTCTCTCGAACGGAGCTAG 59.698 60.000 0.16 0.00 42.82 3.42
139 140 0.028374 GTCTCTCGAACGGAGCTAGC 59.972 60.000 6.62 6.62 42.82 3.42
140 141 0.107606 TCTCTCGAACGGAGCTAGCT 60.108 55.000 19.45 19.45 42.82 3.32
141 142 1.138464 TCTCTCGAACGGAGCTAGCTA 59.862 52.381 19.38 0.00 42.82 3.32
142 143 1.529438 CTCTCGAACGGAGCTAGCTAG 59.471 57.143 19.38 16.84 42.82 3.42
162 163 1.455030 GCTGCTAGCTCAATCGATTCG 59.545 52.381 17.23 3.63 38.45 3.34
163 164 1.455030 CTGCTAGCTCAATCGATTCGC 59.545 52.381 17.23 17.07 0.00 4.70
164 165 1.202405 TGCTAGCTCAATCGATTCGCA 60.202 47.619 23.34 15.37 0.00 5.10
165 166 1.191204 GCTAGCTCAATCGATTCGCAC 59.809 52.381 23.34 12.97 0.00 5.34
166 167 1.449789 CTAGCTCAATCGATTCGCACG 59.550 52.381 23.34 13.67 0.00 5.34
167 168 1.148157 AGCTCAATCGATTCGCACGG 61.148 55.000 23.34 7.84 0.00 4.94
168 169 1.145759 GCTCAATCGATTCGCACGGA 61.146 55.000 18.94 8.28 0.00 4.69
169 170 0.848942 CTCAATCGATTCGCACGGAG 59.151 55.000 7.92 7.08 0.00 4.63
170 171 1.145759 TCAATCGATTCGCACGGAGC 61.146 55.000 7.92 0.00 40.87 4.70
171 172 1.141881 AATCGATTCGCACGGAGCT 59.858 52.632 4.39 0.00 42.61 4.09
172 173 0.384309 AATCGATTCGCACGGAGCTA 59.616 50.000 4.39 0.00 42.61 3.32
173 174 0.039978 ATCGATTCGCACGGAGCTAG 60.040 55.000 0.00 0.00 42.61 3.42
174 175 2.296480 CGATTCGCACGGAGCTAGC 61.296 63.158 6.62 6.62 42.61 3.42
175 176 1.066587 GATTCGCACGGAGCTAGCT 59.933 57.895 19.45 19.45 42.61 3.32
176 177 0.311165 GATTCGCACGGAGCTAGCTA 59.689 55.000 19.38 0.00 42.61 3.32
177 178 0.312416 ATTCGCACGGAGCTAGCTAG 59.688 55.000 19.38 16.84 42.61 3.42
194 195 2.583593 GCTCGATGCGTGTCTCCC 60.584 66.667 0.00 0.00 0.00 4.30
195 196 2.278206 CTCGATGCGTGTCTCCCG 60.278 66.667 0.00 0.00 0.00 5.14
196 197 2.748647 TCGATGCGTGTCTCCCGA 60.749 61.111 0.00 0.00 0.00 5.14
197 198 2.579787 CGATGCGTGTCTCCCGAC 60.580 66.667 0.00 0.00 40.64 4.79
198 199 2.579787 GATGCGTGTCTCCCGACG 60.580 66.667 0.00 0.00 43.21 5.12
199 200 4.129737 ATGCGTGTCTCCCGACGG 62.130 66.667 6.99 6.99 43.21 4.79
263 264 4.452733 CCGCCCCGTGTCTTCCTC 62.453 72.222 0.00 0.00 0.00 3.71
264 265 4.796231 CGCCCCGTGTCTTCCTCG 62.796 72.222 0.00 0.00 0.00 4.63
265 266 3.692406 GCCCCGTGTCTTCCTCGT 61.692 66.667 0.00 0.00 0.00 4.18
266 267 2.572284 CCCCGTGTCTTCCTCGTC 59.428 66.667 0.00 0.00 0.00 4.20
267 268 2.572284 CCCGTGTCTTCCTCGTCC 59.428 66.667 0.00 0.00 0.00 4.79
268 269 2.178521 CCGTGTCTTCCTCGTCCG 59.821 66.667 0.00 0.00 0.00 4.79
269 270 2.504244 CGTGTCTTCCTCGTCCGC 60.504 66.667 0.00 0.00 0.00 5.54
270 271 2.963371 GTGTCTTCCTCGTCCGCT 59.037 61.111 0.00 0.00 0.00 5.52
271 272 1.289380 GTGTCTTCCTCGTCCGCTT 59.711 57.895 0.00 0.00 0.00 4.68
272 273 1.009389 GTGTCTTCCTCGTCCGCTTG 61.009 60.000 0.00 0.00 0.00 4.01
273 274 1.289380 GTCTTCCTCGTCCGCTTGT 59.711 57.895 0.00 0.00 0.00 3.16
274 275 0.733223 GTCTTCCTCGTCCGCTTGTC 60.733 60.000 0.00 0.00 0.00 3.18
275 276 1.446272 CTTCCTCGTCCGCTTGTCC 60.446 63.158 0.00 0.00 0.00 4.02
276 277 3.277211 TTCCTCGTCCGCTTGTCCG 62.277 63.158 0.00 0.00 0.00 4.79
300 301 4.223964 GCCGCGCTGGTCGATTTC 62.224 66.667 17.38 0.00 41.67 2.17
301 302 2.813474 CCGCGCTGGTCGATTTCA 60.813 61.111 5.56 0.00 41.67 2.69
302 303 2.387445 CCGCGCTGGTCGATTTCAA 61.387 57.895 5.56 0.00 41.67 2.69
303 304 1.059369 CGCGCTGGTCGATTTCAAG 59.941 57.895 5.56 0.00 41.67 3.02
304 305 1.626654 CGCGCTGGTCGATTTCAAGT 61.627 55.000 5.56 0.00 41.67 3.16
305 306 0.517316 GCGCTGGTCGATTTCAAGTT 59.483 50.000 0.00 0.00 41.67 2.66
306 307 1.725931 GCGCTGGTCGATTTCAAGTTG 60.726 52.381 0.00 0.00 41.67 3.16
307 308 1.135972 CGCTGGTCGATTTCAAGTTGG 60.136 52.381 2.34 0.00 41.67 3.77
308 309 1.401539 GCTGGTCGATTTCAAGTTGGC 60.402 52.381 2.34 0.00 0.00 4.52
309 310 1.200020 CTGGTCGATTTCAAGTTGGCC 59.800 52.381 2.34 0.00 0.00 5.36
310 311 1.202879 TGGTCGATTTCAAGTTGGCCT 60.203 47.619 3.32 0.00 0.00 5.19
311 312 1.200020 GGTCGATTTCAAGTTGGCCTG 59.800 52.381 3.32 0.00 0.00 4.85
312 313 2.151202 GTCGATTTCAAGTTGGCCTGA 58.849 47.619 3.32 0.00 0.00 3.86
313 314 2.160417 GTCGATTTCAAGTTGGCCTGAG 59.840 50.000 3.32 0.00 0.00 3.35
314 315 1.470098 CGATTTCAAGTTGGCCTGAGG 59.530 52.381 3.32 0.00 0.00 3.86
315 316 2.795329 GATTTCAAGTTGGCCTGAGGA 58.205 47.619 0.65 0.00 0.00 3.71
316 317 2.746279 TTTCAAGTTGGCCTGAGGAA 57.254 45.000 0.65 0.00 0.00 3.36
317 318 2.276732 TTCAAGTTGGCCTGAGGAAG 57.723 50.000 0.65 0.00 0.00 3.46
318 319 1.434188 TCAAGTTGGCCTGAGGAAGA 58.566 50.000 0.65 0.00 0.00 2.87
319 320 1.988107 TCAAGTTGGCCTGAGGAAGAT 59.012 47.619 0.65 0.00 0.00 2.40
320 321 2.089980 CAAGTTGGCCTGAGGAAGATG 58.910 52.381 0.65 0.00 0.00 2.90
321 322 1.661463 AGTTGGCCTGAGGAAGATGA 58.339 50.000 0.65 0.00 0.00 2.92
322 323 1.280421 AGTTGGCCTGAGGAAGATGAC 59.720 52.381 0.65 0.00 0.00 3.06
323 324 0.250234 TTGGCCTGAGGAAGATGACG 59.750 55.000 0.65 0.00 0.00 4.35
324 325 0.614697 TGGCCTGAGGAAGATGACGA 60.615 55.000 0.65 0.00 0.00 4.20
325 326 0.179097 GGCCTGAGGAAGATGACGAC 60.179 60.000 0.65 0.00 0.00 4.34
326 327 0.179097 GCCTGAGGAAGATGACGACC 60.179 60.000 0.65 0.00 0.00 4.79
327 328 1.186200 CCTGAGGAAGATGACGACCA 58.814 55.000 0.00 0.00 0.00 4.02
328 329 1.550524 CCTGAGGAAGATGACGACCAA 59.449 52.381 0.00 0.00 0.00 3.67
329 330 2.028112 CCTGAGGAAGATGACGACCAAA 60.028 50.000 0.00 0.00 0.00 3.28
330 331 3.557054 CCTGAGGAAGATGACGACCAAAA 60.557 47.826 0.00 0.00 0.00 2.44
331 332 4.065088 CTGAGGAAGATGACGACCAAAAA 58.935 43.478 0.00 0.00 0.00 1.94
358 359 5.925509 GCCAGTTGTGGGTATATTTAGAGA 58.074 41.667 0.00 0.00 45.17 3.10
359 360 6.354130 GCCAGTTGTGGGTATATTTAGAGAA 58.646 40.000 0.00 0.00 45.17 2.87
360 361 6.998673 GCCAGTTGTGGGTATATTTAGAGAAT 59.001 38.462 0.00 0.00 45.17 2.40
361 362 8.154856 GCCAGTTGTGGGTATATTTAGAGAATA 58.845 37.037 0.00 0.00 45.17 1.75
387 388 7.784633 TCTTTTTACGGGTTAATTATACGGG 57.215 36.000 8.26 0.13 0.00 5.28
388 389 6.259829 TCTTTTTACGGGTTAATTATACGGGC 59.740 38.462 8.26 0.00 0.00 6.13
389 390 4.953940 TTACGGGTTAATTATACGGGCT 57.046 40.909 8.26 0.00 0.00 5.19
390 391 3.391506 ACGGGTTAATTATACGGGCTC 57.608 47.619 8.26 0.00 0.00 4.70
391 392 2.967887 ACGGGTTAATTATACGGGCTCT 59.032 45.455 8.26 0.00 0.00 4.09
392 393 3.243975 ACGGGTTAATTATACGGGCTCTG 60.244 47.826 8.26 0.00 0.00 3.35
393 394 3.243975 CGGGTTAATTATACGGGCTCTGT 60.244 47.826 0.00 0.00 0.00 3.41
394 395 4.711399 GGGTTAATTATACGGGCTCTGTT 58.289 43.478 0.00 0.00 0.00 3.16
395 396 4.753610 GGGTTAATTATACGGGCTCTGTTC 59.246 45.833 0.00 0.00 0.00 3.18
396 397 4.446719 GGTTAATTATACGGGCTCTGTTCG 59.553 45.833 0.00 0.00 0.00 3.95
397 398 2.814280 ATTATACGGGCTCTGTTCGG 57.186 50.000 0.00 0.00 0.00 4.30
398 399 1.477553 TTATACGGGCTCTGTTCGGT 58.522 50.000 0.00 0.00 0.00 4.69
399 400 1.027357 TATACGGGCTCTGTTCGGTC 58.973 55.000 0.00 0.00 0.00 4.79
400 401 2.001361 ATACGGGCTCTGTTCGGTCG 62.001 60.000 0.00 0.00 0.00 4.79
402 403 4.373116 GGGCTCTGTTCGGTCGCA 62.373 66.667 0.00 0.00 0.00 5.10
403 404 2.357034 GGCTCTGTTCGGTCGCAA 60.357 61.111 0.00 0.00 0.00 4.85
404 405 2.668280 GGCTCTGTTCGGTCGCAAC 61.668 63.158 0.00 0.00 0.00 4.17
405 406 1.664965 GCTCTGTTCGGTCGCAACT 60.665 57.895 0.00 0.00 0.00 3.16
406 407 0.388134 GCTCTGTTCGGTCGCAACTA 60.388 55.000 0.00 0.00 0.00 2.24
407 408 1.933500 GCTCTGTTCGGTCGCAACTAA 60.934 52.381 0.00 0.00 0.00 2.24
408 409 2.400399 CTCTGTTCGGTCGCAACTAAA 58.600 47.619 0.00 0.00 0.00 1.85
409 410 2.798283 CTCTGTTCGGTCGCAACTAAAA 59.202 45.455 0.00 0.00 0.00 1.52
410 411 3.395639 TCTGTTCGGTCGCAACTAAAAT 58.604 40.909 0.00 0.00 0.00 1.82
411 412 3.810941 TCTGTTCGGTCGCAACTAAAATT 59.189 39.130 0.00 0.00 0.00 1.82
412 413 3.879427 TGTTCGGTCGCAACTAAAATTG 58.121 40.909 0.00 0.00 0.00 2.32
413 414 3.231160 GTTCGGTCGCAACTAAAATTGG 58.769 45.455 0.00 0.00 0.00 3.16
414 415 1.198178 TCGGTCGCAACTAAAATTGGC 59.802 47.619 0.00 0.00 0.00 4.52
415 416 1.731098 CGGTCGCAACTAAAATTGGCC 60.731 52.381 0.00 0.00 0.00 5.36
416 417 1.403647 GGTCGCAACTAAAATTGGCCC 60.404 52.381 0.00 0.00 0.00 5.80
417 418 1.544246 GTCGCAACTAAAATTGGCCCT 59.456 47.619 0.00 0.00 0.00 5.19
418 419 2.029380 GTCGCAACTAAAATTGGCCCTT 60.029 45.455 0.00 0.00 0.00 3.95
419 420 3.191791 GTCGCAACTAAAATTGGCCCTTA 59.808 43.478 0.00 0.00 0.00 2.69
420 421 4.020543 TCGCAACTAAAATTGGCCCTTAT 58.979 39.130 0.00 0.00 0.00 1.73
421 422 5.066764 GTCGCAACTAAAATTGGCCCTTATA 59.933 40.000 0.00 0.00 0.00 0.98
422 423 5.652891 TCGCAACTAAAATTGGCCCTTATAA 59.347 36.000 0.00 0.00 0.00 0.98
423 424 6.322712 TCGCAACTAAAATTGGCCCTTATAAT 59.677 34.615 0.00 0.00 0.00 1.28
424 425 6.420604 CGCAACTAAAATTGGCCCTTATAATG 59.579 38.462 0.00 0.00 0.00 1.90
425 426 7.272244 GCAACTAAAATTGGCCCTTATAATGT 58.728 34.615 0.00 0.00 0.00 2.71
426 427 7.224557 GCAACTAAAATTGGCCCTTATAATGTG 59.775 37.037 0.00 0.00 0.00 3.21
427 428 7.971368 ACTAAAATTGGCCCTTATAATGTGT 57.029 32.000 0.00 0.00 0.00 3.72
428 429 8.374184 ACTAAAATTGGCCCTTATAATGTGTT 57.626 30.769 0.00 0.00 0.00 3.32
429 430 8.821817 ACTAAAATTGGCCCTTATAATGTGTTT 58.178 29.630 0.00 0.00 0.00 2.83
430 431 9.665719 CTAAAATTGGCCCTTATAATGTGTTTT 57.334 29.630 0.00 0.00 0.00 2.43
431 432 8.932434 AAAATTGGCCCTTATAATGTGTTTTT 57.068 26.923 0.00 0.00 0.00 1.94
432 433 8.560355 AAATTGGCCCTTATAATGTGTTTTTC 57.440 30.769 0.00 0.00 0.00 2.29
433 434 6.926630 TTGGCCCTTATAATGTGTTTTTCT 57.073 33.333 0.00 0.00 0.00 2.52
434 435 6.926630 TGGCCCTTATAATGTGTTTTTCTT 57.073 33.333 0.00 0.00 0.00 2.52
435 436 6.696411 TGGCCCTTATAATGTGTTTTTCTTG 58.304 36.000 0.00 0.00 0.00 3.02
436 437 6.106003 GGCCCTTATAATGTGTTTTTCTTGG 58.894 40.000 0.00 0.00 0.00 3.61
437 438 5.580691 GCCCTTATAATGTGTTTTTCTTGGC 59.419 40.000 0.00 0.00 0.00 4.52
438 439 6.106003 CCCTTATAATGTGTTTTTCTTGGCC 58.894 40.000 0.00 0.00 0.00 5.36
439 440 6.106003 CCTTATAATGTGTTTTTCTTGGCCC 58.894 40.000 0.00 0.00 0.00 5.80
440 441 2.524569 AATGTGTTTTTCTTGGCCCG 57.475 45.000 0.00 0.00 0.00 6.13
441 442 1.408969 ATGTGTTTTTCTTGGCCCGT 58.591 45.000 0.00 0.00 0.00 5.28
442 443 2.054232 TGTGTTTTTCTTGGCCCGTA 57.946 45.000 0.00 0.00 0.00 4.02
443 444 2.376109 TGTGTTTTTCTTGGCCCGTAA 58.624 42.857 0.00 0.00 0.00 3.18
444 445 2.758979 TGTGTTTTTCTTGGCCCGTAAA 59.241 40.909 0.00 0.00 0.00 2.01
445 446 3.194968 TGTGTTTTTCTTGGCCCGTAAAA 59.805 39.130 0.00 0.81 0.00 1.52
446 447 3.552699 GTGTTTTTCTTGGCCCGTAAAAC 59.447 43.478 20.47 20.47 38.51 2.43
447 448 3.194968 TGTTTTTCTTGGCCCGTAAAACA 59.805 39.130 23.50 23.50 42.83 2.83
448 449 3.439895 TTTTCTTGGCCCGTAAAACAC 57.560 42.857 0.00 0.00 0.00 3.32
449 450 2.351706 TTCTTGGCCCGTAAAACACT 57.648 45.000 0.00 0.00 0.00 3.55
450 451 2.351706 TCTTGGCCCGTAAAACACTT 57.648 45.000 0.00 0.00 0.00 3.16
451 452 3.488778 TCTTGGCCCGTAAAACACTTA 57.511 42.857 0.00 0.00 0.00 2.24
452 453 4.023726 TCTTGGCCCGTAAAACACTTAT 57.976 40.909 0.00 0.00 0.00 1.73
453 454 5.163281 TCTTGGCCCGTAAAACACTTATA 57.837 39.130 0.00 0.00 0.00 0.98
454 455 4.937015 TCTTGGCCCGTAAAACACTTATAC 59.063 41.667 0.00 0.00 0.00 1.47
455 456 3.260740 TGGCCCGTAAAACACTTATACG 58.739 45.455 0.00 0.00 41.42 3.06
460 461 4.743507 CGTAAAACACTTATACGGGTCG 57.256 45.455 0.00 0.00 38.89 4.79
461 462 3.000773 CGTAAAACACTTATACGGGTCGC 60.001 47.826 0.00 0.00 38.89 5.19
462 463 2.747396 AAACACTTATACGGGTCGCA 57.253 45.000 0.00 0.00 0.00 5.10
463 464 2.288961 AACACTTATACGGGTCGCAG 57.711 50.000 0.00 0.00 0.00 5.18
464 465 1.180029 ACACTTATACGGGTCGCAGT 58.820 50.000 0.00 0.00 0.00 4.40
465 466 1.547372 ACACTTATACGGGTCGCAGTT 59.453 47.619 0.00 0.00 0.00 3.16
466 467 2.028748 ACACTTATACGGGTCGCAGTTT 60.029 45.455 0.00 0.00 0.00 2.66
467 468 2.997986 CACTTATACGGGTCGCAGTTTT 59.002 45.455 0.00 0.00 0.00 2.43
468 469 4.175516 CACTTATACGGGTCGCAGTTTTA 58.824 43.478 0.00 0.00 0.00 1.52
469 470 4.626604 CACTTATACGGGTCGCAGTTTTAA 59.373 41.667 0.00 0.00 0.00 1.52
470 471 4.866486 ACTTATACGGGTCGCAGTTTTAAG 59.134 41.667 0.00 0.00 0.00 1.85
471 472 2.083167 TACGGGTCGCAGTTTTAAGG 57.917 50.000 0.00 0.00 0.00 2.69
472 473 0.604511 ACGGGTCGCAGTTTTAAGGG 60.605 55.000 0.00 0.00 0.00 3.95
473 474 1.303091 CGGGTCGCAGTTTTAAGGGG 61.303 60.000 0.00 0.00 0.00 4.79
474 475 0.251033 GGGTCGCAGTTTTAAGGGGT 60.251 55.000 0.00 0.00 0.00 4.95
475 476 1.162698 GGTCGCAGTTTTAAGGGGTC 58.837 55.000 0.00 0.00 0.00 4.46
476 477 1.271217 GGTCGCAGTTTTAAGGGGTCT 60.271 52.381 0.00 0.00 0.00 3.85
477 478 1.804748 GTCGCAGTTTTAAGGGGTCTG 59.195 52.381 0.00 0.00 0.00 3.51
478 479 0.521735 CGCAGTTTTAAGGGGTCTGC 59.478 55.000 0.00 0.00 45.13 4.26
479 480 1.882352 CGCAGTTTTAAGGGGTCTGCT 60.882 52.381 12.37 0.00 46.00 4.24
480 481 2.614481 CGCAGTTTTAAGGGGTCTGCTA 60.614 50.000 12.37 0.00 46.00 3.49
481 482 3.010420 GCAGTTTTAAGGGGTCTGCTAG 58.990 50.000 7.98 0.00 45.14 3.42
482 483 3.307480 GCAGTTTTAAGGGGTCTGCTAGA 60.307 47.826 7.98 0.00 45.14 2.43
483 484 4.508662 CAGTTTTAAGGGGTCTGCTAGAG 58.491 47.826 0.00 0.00 0.00 2.43
484 485 4.223032 CAGTTTTAAGGGGTCTGCTAGAGA 59.777 45.833 0.00 0.00 0.00 3.10
485 486 5.033522 AGTTTTAAGGGGTCTGCTAGAGAT 58.966 41.667 0.00 0.00 31.63 2.75
486 487 5.104735 AGTTTTAAGGGGTCTGCTAGAGATG 60.105 44.000 0.00 0.00 31.63 2.90
487 488 1.127343 AAGGGGTCTGCTAGAGATGC 58.873 55.000 0.00 0.00 31.63 3.91
488 489 0.264359 AGGGGTCTGCTAGAGATGCT 59.736 55.000 0.00 0.00 31.63 3.79
489 490 0.678950 GGGGTCTGCTAGAGATGCTC 59.321 60.000 0.00 0.00 31.63 4.26
490 491 1.703411 GGGTCTGCTAGAGATGCTCT 58.297 55.000 0.00 2.22 43.83 4.09
491 492 2.038659 GGGTCTGCTAGAGATGCTCTT 58.961 52.381 1.88 0.00 41.50 2.85
492 493 3.226777 GGGTCTGCTAGAGATGCTCTTA 58.773 50.000 1.88 0.00 41.50 2.10
493 494 3.639094 GGGTCTGCTAGAGATGCTCTTAA 59.361 47.826 1.88 0.00 41.50 1.85
494 495 4.100189 GGGTCTGCTAGAGATGCTCTTAAA 59.900 45.833 1.88 0.00 41.50 1.52
495 496 5.395768 GGGTCTGCTAGAGATGCTCTTAAAA 60.396 44.000 1.88 0.00 41.50 1.52
496 497 5.522097 GGTCTGCTAGAGATGCTCTTAAAAC 59.478 44.000 1.88 0.00 41.50 2.43
497 498 5.522097 GTCTGCTAGAGATGCTCTTAAAACC 59.478 44.000 1.88 0.00 41.50 3.27
498 499 4.433615 TGCTAGAGATGCTCTTAAAACCG 58.566 43.478 1.88 0.00 41.50 4.44
499 500 4.081642 TGCTAGAGATGCTCTTAAAACCGT 60.082 41.667 1.88 0.00 41.50 4.83
500 501 5.126545 TGCTAGAGATGCTCTTAAAACCGTA 59.873 40.000 1.88 0.00 41.50 4.02
501 502 5.459434 GCTAGAGATGCTCTTAAAACCGTAC 59.541 44.000 1.88 0.00 41.50 3.67
502 503 5.662674 AGAGATGCTCTTAAAACCGTACT 57.337 39.130 0.00 0.00 37.60 2.73
503 504 6.038997 AGAGATGCTCTTAAAACCGTACTT 57.961 37.500 0.00 0.00 37.60 2.24
504 505 7.166691 AGAGATGCTCTTAAAACCGTACTTA 57.833 36.000 0.00 0.00 37.60 2.24
505 506 7.609056 AGAGATGCTCTTAAAACCGTACTTAA 58.391 34.615 0.00 0.00 37.60 1.85
506 507 8.092687 AGAGATGCTCTTAAAACCGTACTTAAA 58.907 33.333 0.00 0.00 37.60 1.52
507 508 8.026341 AGATGCTCTTAAAACCGTACTTAAAC 57.974 34.615 0.00 0.00 0.00 2.01
508 509 7.876582 AGATGCTCTTAAAACCGTACTTAAACT 59.123 33.333 0.00 0.00 0.00 2.66
509 510 7.181143 TGCTCTTAAAACCGTACTTAAACTG 57.819 36.000 0.00 0.00 0.00 3.16
510 511 6.762661 TGCTCTTAAAACCGTACTTAAACTGT 59.237 34.615 0.00 0.00 0.00 3.55
511 512 7.925483 TGCTCTTAAAACCGTACTTAAACTGTA 59.075 33.333 0.00 0.00 0.00 2.74
512 513 8.764287 GCTCTTAAAACCGTACTTAAACTGTAA 58.236 33.333 0.00 0.00 0.00 2.41
517 518 8.599876 AAAACCGTACTTAAACTGTAAAAACG 57.400 30.769 0.00 0.00 0.00 3.60
518 519 6.902224 ACCGTACTTAAACTGTAAAAACGT 57.098 33.333 0.00 0.00 0.00 3.99
519 520 6.933130 ACCGTACTTAAACTGTAAAAACGTC 58.067 36.000 0.00 0.00 0.00 4.34
520 521 6.756542 ACCGTACTTAAACTGTAAAAACGTCT 59.243 34.615 0.00 0.00 0.00 4.18
521 522 7.277760 ACCGTACTTAAACTGTAAAAACGTCTT 59.722 33.333 0.00 0.00 0.00 3.01
522 523 8.751335 CCGTACTTAAACTGTAAAAACGTCTTA 58.249 33.333 0.00 0.00 0.00 2.10
531 532 8.488651 ACTGTAAAAACGTCTTATATCAAGGG 57.511 34.615 0.00 0.00 0.00 3.95
532 533 7.551617 ACTGTAAAAACGTCTTATATCAAGGGG 59.448 37.037 0.00 0.00 0.00 4.79
533 534 5.830000 AAAAACGTCTTATATCAAGGGGC 57.170 39.130 0.00 0.00 0.00 5.80
534 535 4.497291 AAACGTCTTATATCAAGGGGCA 57.503 40.909 0.00 0.00 0.00 5.36
535 536 4.497291 AACGTCTTATATCAAGGGGCAA 57.503 40.909 0.00 0.00 0.00 4.52
536 537 4.497291 ACGTCTTATATCAAGGGGCAAA 57.503 40.909 0.00 0.00 0.00 3.68
537 538 4.451900 ACGTCTTATATCAAGGGGCAAAG 58.548 43.478 0.00 0.00 0.00 2.77
538 539 4.080526 ACGTCTTATATCAAGGGGCAAAGT 60.081 41.667 0.00 0.00 0.00 2.66
539 540 4.273480 CGTCTTATATCAAGGGGCAAAGTG 59.727 45.833 0.00 0.00 0.00 3.16
540 541 5.437060 GTCTTATATCAAGGGGCAAAGTGA 58.563 41.667 0.00 0.00 0.00 3.41
541 542 5.529060 GTCTTATATCAAGGGGCAAAGTGAG 59.471 44.000 0.00 0.00 0.00 3.51
542 543 2.128771 TATCAAGGGGCAAAGTGAGC 57.871 50.000 0.00 0.00 0.00 4.26
543 544 0.112995 ATCAAGGGGCAAAGTGAGCA 59.887 50.000 0.00 0.00 0.00 4.26
544 545 0.823356 TCAAGGGGCAAAGTGAGCAC 60.823 55.000 0.00 0.00 33.73 4.40
545 546 1.108727 CAAGGGGCAAAGTGAGCACA 61.109 55.000 3.19 0.00 37.05 4.57
546 547 0.396974 AAGGGGCAAAGTGAGCACAA 60.397 50.000 3.19 0.00 37.05 3.33
547 548 1.109323 AGGGGCAAAGTGAGCACAAC 61.109 55.000 3.19 0.00 37.05 3.32
548 549 1.391157 GGGGCAAAGTGAGCACAACA 61.391 55.000 3.19 0.00 37.05 3.33
549 550 0.459489 GGGCAAAGTGAGCACAACAA 59.541 50.000 3.19 0.00 34.91 2.83
550 551 1.134848 GGGCAAAGTGAGCACAACAAA 60.135 47.619 3.19 0.00 34.91 2.83
551 552 2.615869 GGCAAAGTGAGCACAACAAAA 58.384 42.857 3.19 0.00 0.00 2.44
552 553 2.999355 GGCAAAGTGAGCACAACAAAAA 59.001 40.909 3.19 0.00 0.00 1.94
553 554 3.622612 GGCAAAGTGAGCACAACAAAAAT 59.377 39.130 3.19 0.00 0.00 1.82
554 555 4.808364 GGCAAAGTGAGCACAACAAAAATA 59.192 37.500 3.19 0.00 0.00 1.40
555 556 5.466393 GGCAAAGTGAGCACAACAAAAATAT 59.534 36.000 3.19 0.00 0.00 1.28
556 557 6.018016 GGCAAAGTGAGCACAACAAAAATATT 60.018 34.615 3.19 0.00 0.00 1.28
557 558 7.408910 GCAAAGTGAGCACAACAAAAATATTT 58.591 30.769 3.19 0.00 0.00 1.40
558 559 8.547069 GCAAAGTGAGCACAACAAAAATATTTA 58.453 29.630 0.01 0.00 0.00 1.40
576 577 9.607988 AAATATTTAGATTGATGTACACACCGA 57.392 29.630 0.00 0.00 0.00 4.69
577 578 9.607988 AATATTTAGATTGATGTACACACCGAA 57.392 29.630 0.00 0.00 0.00 4.30
578 579 7.915293 ATTTAGATTGATGTACACACCGAAA 57.085 32.000 0.00 3.56 0.00 3.46
579 580 7.731882 TTTAGATTGATGTACACACCGAAAA 57.268 32.000 0.00 0.00 0.00 2.29
580 581 5.607119 AGATTGATGTACACACCGAAAAC 57.393 39.130 0.00 0.00 0.00 2.43
581 582 5.060506 AGATTGATGTACACACCGAAAACA 58.939 37.500 0.00 0.00 0.00 2.83
582 583 4.804608 TTGATGTACACACCGAAAACAG 57.195 40.909 0.00 0.00 0.00 3.16
583 584 3.799366 TGATGTACACACCGAAAACAGT 58.201 40.909 0.00 0.00 0.00 3.55
584 585 3.805422 TGATGTACACACCGAAAACAGTC 59.195 43.478 0.00 0.00 0.00 3.51
585 586 3.248495 TGTACACACCGAAAACAGTCA 57.752 42.857 0.00 0.00 0.00 3.41
586 587 3.799366 TGTACACACCGAAAACAGTCAT 58.201 40.909 0.00 0.00 0.00 3.06
587 588 3.558006 TGTACACACCGAAAACAGTCATG 59.442 43.478 0.00 0.00 0.00 3.07
599 600 7.008628 CCGAAAACAGTCATGAGCATATTTTTC 59.991 37.037 0.00 5.44 0.00 2.29
621 622 8.522178 TTTCGTTTGAAAAACACAGTACAAAT 57.478 26.923 0.00 0.00 41.02 2.32
622 623 7.499438 TCGTTTGAAAAACACAGTACAAATG 57.501 32.000 0.00 0.00 36.34 2.32
623 624 6.034044 TCGTTTGAAAAACACAGTACAAATGC 59.966 34.615 0.00 0.00 35.56 3.56
634 635 5.919707 CACAGTACAAATGCAAATGCTTGTA 59.080 36.000 13.19 13.19 39.26 2.41
641 642 8.633075 ACAAATGCAAATGCTTGTACATATAC 57.367 30.769 10.26 0.00 37.57 1.47
642 643 8.249638 ACAAATGCAAATGCTTGTACATATACA 58.750 29.630 10.26 0.00 37.57 2.29
645 646 9.897744 AATGCAAATGCTTGTACATATACATAC 57.102 29.630 6.97 0.00 38.87 2.39
674 675 8.077991 ACATTTATCATTTATGAATGCACGGAG 58.922 33.333 5.35 0.00 42.50 4.63
675 676 6.558771 TTATCATTTATGAATGCACGGAGG 57.441 37.500 5.35 0.00 41.94 4.30
715 722 5.126869 AGAGATGGAGTCGGCATAGATATTG 59.873 44.000 0.00 0.00 0.00 1.90
718 726 3.895041 TGGAGTCGGCATAGATATTGACA 59.105 43.478 0.00 0.00 0.00 3.58
758 771 3.632604 TCATAGTCGAAGGGTGTCTCATC 59.367 47.826 0.00 0.00 0.00 2.92
862 880 6.760440 ATCTAGATGGACAGATTTCACCAT 57.240 37.500 3.89 0.00 44.40 3.55
889 908 1.207390 CTATCTTGCTGACGCTGAGC 58.793 55.000 0.00 0.00 36.97 4.26
1080 1134 1.202582 ACAGCGTACTCTGGTCATCAC 59.797 52.381 16.80 0.00 38.36 3.06
1095 1149 2.303022 TCATCACCGCCTCTTCTTCTTT 59.697 45.455 0.00 0.00 0.00 2.52
1096 1150 2.930826 TCACCGCCTCTTCTTCTTTT 57.069 45.000 0.00 0.00 0.00 2.27
1220 1274 1.372997 GCTCGTGTTCTTCTCGGCA 60.373 57.895 0.00 0.00 34.40 5.69
1355 1409 1.921869 AATCCGGCGTCCCAAAGGAT 61.922 55.000 6.01 0.00 46.41 3.24
1442 1509 3.191182 CCAGGTACAGGGATTTGGC 57.809 57.895 0.00 0.00 0.00 4.52
1446 1513 1.134098 AGGTACAGGGATTTGGCATCG 60.134 52.381 0.00 0.00 0.00 3.84
1447 1514 0.663153 GTACAGGGATTTGGCATCGC 59.337 55.000 0.00 0.00 0.00 4.58
1451 1518 0.257039 AGGGATTTGGCATCGCTCTT 59.743 50.000 2.15 0.00 36.76 2.85
1458 1537 1.586422 TGGCATCGCTCTTTCTATGC 58.414 50.000 0.00 0.00 43.13 3.14
1487 1566 2.667137 CAGACGAACCAGAGAGTTGAC 58.333 52.381 0.00 0.00 0.00 3.18
1491 1570 2.693591 ACGAACCAGAGAGTTGACTGAA 59.306 45.455 0.00 0.00 36.38 3.02
1493 1572 4.523173 ACGAACCAGAGAGTTGACTGAATA 59.477 41.667 0.00 0.00 36.38 1.75
1495 1574 5.336055 CGAACCAGAGAGTTGACTGAATAGT 60.336 44.000 0.00 0.00 40.66 2.12
1530 1613 0.107945 GTTCTCAGGGGCTGCTACAG 60.108 60.000 0.00 0.00 34.12 2.74
1749 1836 2.749621 CAGGTAACAAGTGCTGGAATCC 59.250 50.000 0.00 0.00 41.41 3.01
1758 1845 2.172293 AGTGCTGGAATCCCATCTTCTC 59.828 50.000 0.00 0.00 42.59 2.87
1759 1846 1.492176 TGCTGGAATCCCATCTTCTCC 59.508 52.381 0.00 0.00 42.59 3.71
1760 1847 1.202867 GCTGGAATCCCATCTTCTCCC 60.203 57.143 0.00 0.00 42.59 4.30
1785 1872 3.813166 CCATTACAACCTGTGACGTCTTT 59.187 43.478 17.92 0.00 0.00 2.52
1786 1873 4.084013 CCATTACAACCTGTGACGTCTTTC 60.084 45.833 17.92 7.95 0.00 2.62
1787 1874 2.981859 ACAACCTGTGACGTCTTTCT 57.018 45.000 17.92 0.00 0.00 2.52
1788 1875 3.261981 ACAACCTGTGACGTCTTTCTT 57.738 42.857 17.92 0.00 0.00 2.52
1789 1876 4.395959 ACAACCTGTGACGTCTTTCTTA 57.604 40.909 17.92 0.00 0.00 2.10
1790 1877 4.761975 ACAACCTGTGACGTCTTTCTTAA 58.238 39.130 17.92 0.00 0.00 1.85
1791 1878 4.569564 ACAACCTGTGACGTCTTTCTTAAC 59.430 41.667 17.92 5.03 0.00 2.01
1792 1879 3.725490 ACCTGTGACGTCTTTCTTAACC 58.275 45.455 17.92 0.00 0.00 2.85
1793 1880 3.133362 ACCTGTGACGTCTTTCTTAACCA 59.867 43.478 17.92 0.00 0.00 3.67
1794 1881 4.202326 ACCTGTGACGTCTTTCTTAACCAT 60.202 41.667 17.92 0.00 0.00 3.55
1801 1888 5.488341 ACGTCTTTCTTAACCATACTGCAT 58.512 37.500 0.00 0.00 0.00 3.96
1803 1890 5.812642 CGTCTTTCTTAACCATACTGCATCT 59.187 40.000 0.00 0.00 0.00 2.90
1806 1893 6.823689 TCTTTCTTAACCATACTGCATCTTCC 59.176 38.462 0.00 0.00 0.00 3.46
1807 1894 5.036117 TCTTAACCATACTGCATCTTCCC 57.964 43.478 0.00 0.00 0.00 3.97
2051 2152 1.338136 AACCCCGCCATCTACTCCAG 61.338 60.000 0.00 0.00 0.00 3.86
2069 2170 1.743252 GGGAAGACAAGCCGCTCAG 60.743 63.158 0.00 0.00 0.00 3.35
2100 2201 3.057548 CAGCGAGCCCACAATGCA 61.058 61.111 0.00 0.00 0.00 3.96
2101 2202 2.282391 AGCGAGCCCACAATGCAA 60.282 55.556 0.00 0.00 0.00 4.08
2102 2203 2.180017 GCGAGCCCACAATGCAAG 59.820 61.111 0.00 0.00 0.00 4.01
2103 2204 2.334946 GCGAGCCCACAATGCAAGA 61.335 57.895 0.00 0.00 0.00 3.02
2104 2205 1.798735 CGAGCCCACAATGCAAGAG 59.201 57.895 0.00 0.00 0.00 2.85
2105 2206 0.674581 CGAGCCCACAATGCAAGAGA 60.675 55.000 0.00 0.00 0.00 3.10
2106 2207 1.093159 GAGCCCACAATGCAAGAGAG 58.907 55.000 0.00 0.00 0.00 3.20
2134 2238 7.770897 AGAACACTTGAACTTGAATGAACTACT 59.229 33.333 0.00 0.00 0.00 2.57
2172 2276 2.549754 CTGATCTGACGCTTTGGTTTGT 59.450 45.455 0.00 0.00 0.00 2.83
2192 2296 2.550606 GTTTGCTTGTTCGGGTGATGTA 59.449 45.455 0.00 0.00 0.00 2.29
2345 2449 2.338620 CTGTGGCACGGAGTCGAA 59.661 61.111 21.95 0.00 41.61 3.71
2372 2476 2.985847 GTGCCTGTTGCCCTGTCC 60.986 66.667 0.00 0.00 40.16 4.02
2604 2711 1.077716 CTTGGCCCGGGGAGTAAAG 60.078 63.158 25.28 9.95 0.00 1.85
2614 2721 3.825585 CCGGGGAGTAAAGGTAGACTATC 59.174 52.174 0.00 0.00 0.00 2.08
2622 2729 7.092979 GGAGTAAAGGTAGACTATCCCTGTTTT 60.093 40.741 0.00 0.00 0.00 2.43
2623 2730 8.906238 AGTAAAGGTAGACTATCCCTGTTTTA 57.094 34.615 0.00 0.00 0.00 1.52
2624 2731 9.330220 AGTAAAGGTAGACTATCCCTGTTTTAA 57.670 33.333 0.00 0.00 0.00 1.52
2641 2748 7.491372 CCTGTTTTAATACTATGCACTTCGAGA 59.509 37.037 0.00 0.00 0.00 4.04
2647 2757 4.308899 ACTATGCACTTCGAGATGTACC 57.691 45.455 0.00 0.00 0.00 3.34
2648 2758 2.604046 ATGCACTTCGAGATGTACCC 57.396 50.000 0.00 0.00 0.00 3.69
2669 2779 2.203195 AGTGCCAAGTTGCTGCGA 60.203 55.556 0.00 0.00 0.00 5.10
2670 2780 1.601759 AGTGCCAAGTTGCTGCGAT 60.602 52.632 0.00 0.00 0.00 4.58
2671 2781 0.321564 AGTGCCAAGTTGCTGCGATA 60.322 50.000 0.00 0.00 0.00 2.92
2672 2782 0.734889 GTGCCAAGTTGCTGCGATAT 59.265 50.000 0.00 0.00 0.00 1.63
2673 2783 1.016627 TGCCAAGTTGCTGCGATATC 58.983 50.000 0.00 0.00 0.00 1.63
2721 2831 1.819632 GGCGTGTCCCCTGCAATAG 60.820 63.158 0.00 0.00 0.00 1.73
2780 2890 1.439543 GGGCTTACAGGATCCCTCAT 58.560 55.000 8.55 0.00 35.87 2.90
2941 3077 6.313519 TGCTCAAATCTACTATCCACCTTT 57.686 37.500 0.00 0.00 0.00 3.11
2944 3080 7.121168 TGCTCAAATCTACTATCCACCTTTTTG 59.879 37.037 0.00 0.00 0.00 2.44
2945 3081 7.121315 GCTCAAATCTACTATCCACCTTTTTGT 59.879 37.037 0.00 0.00 0.00 2.83
2946 3082 9.667107 CTCAAATCTACTATCCACCTTTTTGTA 57.333 33.333 0.00 0.00 0.00 2.41
2951 3087 7.170277 TCTACTATCCACCTTTTTGTAAACCC 58.830 38.462 0.00 0.00 0.00 4.11
2952 3088 5.960704 ACTATCCACCTTTTTGTAAACCCT 58.039 37.500 0.00 0.00 0.00 4.34
2953 3089 6.378745 ACTATCCACCTTTTTGTAAACCCTT 58.621 36.000 0.00 0.00 0.00 3.95
2955 3091 4.611367 TCCACCTTTTTGTAAACCCTTGA 58.389 39.130 0.00 0.00 0.00 3.02
2956 3092 4.647399 TCCACCTTTTTGTAAACCCTTGAG 59.353 41.667 0.00 0.00 0.00 3.02
2957 3093 4.368315 CACCTTTTTGTAAACCCTTGAGC 58.632 43.478 0.00 0.00 0.00 4.26
2958 3094 4.027437 ACCTTTTTGTAAACCCTTGAGCA 58.973 39.130 0.00 0.00 0.00 4.26
2964 3100 8.600449 TTTTTGTAAACCCTTGAGCATTTATG 57.400 30.769 0.00 0.00 0.00 1.90
2965 3101 7.531857 TTTGTAAACCCTTGAGCATTTATGA 57.468 32.000 0.00 0.00 0.00 2.15
2969 3105 6.418057 AAACCCTTGAGCATTTATGAACAA 57.582 33.333 0.00 0.00 0.00 2.83
2973 3109 6.891908 ACCCTTGAGCATTTATGAACAACTAT 59.108 34.615 0.00 0.00 0.00 2.12
2974 3110 7.397192 ACCCTTGAGCATTTATGAACAACTATT 59.603 33.333 0.00 0.00 0.00 1.73
2975 3111 8.253113 CCCTTGAGCATTTATGAACAACTATTT 58.747 33.333 0.00 0.00 0.00 1.40
2976 3112 9.643693 CCTTGAGCATTTATGAACAACTATTTT 57.356 29.630 0.00 0.00 0.00 1.82
2987 3123 7.461182 TGAACAACTATTTTATTCCACTGGG 57.539 36.000 0.00 0.00 0.00 4.45
2988 3124 7.235079 TGAACAACTATTTTATTCCACTGGGA 58.765 34.615 0.00 0.00 43.03 4.37
3010 3146 1.902938 AGCTCAAGGGTCTTTTGCTC 58.097 50.000 0.00 0.00 0.00 4.26
3018 3154 1.209747 GGGTCTTTTGCTCGTAGGGAT 59.790 52.381 0.00 0.00 0.00 3.85
3026 3165 2.045280 CTCGTAGGGATCAGCCTGG 58.955 63.158 1.03 0.00 36.66 4.45
3105 3483 4.245660 CACAAGAAAAGACTAGCCGATGA 58.754 43.478 0.00 0.00 0.00 2.92
3143 3521 2.381911 GTACTATCCCCGTCCTTGTCA 58.618 52.381 0.00 0.00 0.00 3.58
3207 3585 8.687242 TGTATTGACACTTAAATCCAACAAACA 58.313 29.630 0.00 0.00 0.00 2.83
3208 3586 9.522804 GTATTGACACTTAAATCCAACAAACAA 57.477 29.630 0.00 0.00 0.00 2.83
3210 3588 7.820044 TGACACTTAAATCCAACAAACAAAC 57.180 32.000 0.00 0.00 0.00 2.93
3273 3651 2.634453 ACCCTTGAGCTTTTTCCAATGG 59.366 45.455 0.00 0.00 33.61 3.16
3306 3684 3.476552 TGTTCAGTTTCAGACATGTCCC 58.523 45.455 22.21 5.69 0.00 4.46
3307 3685 2.814336 GTTCAGTTTCAGACATGTCCCC 59.186 50.000 22.21 6.03 0.00 4.81
3310 3688 1.276421 AGTTTCAGACATGTCCCCGAG 59.724 52.381 22.21 7.73 0.00 4.63
3314 3692 1.182667 CAGACATGTCCCCGAGTGTA 58.817 55.000 22.21 0.00 0.00 2.90
3315 3693 1.757118 CAGACATGTCCCCGAGTGTAT 59.243 52.381 22.21 0.00 0.00 2.29
3329 3707 4.935205 CCGAGTGTATCACTTGATTTTGGA 59.065 41.667 16.01 0.00 45.84 3.53
3375 3753 5.435291 CTCTCCCAATGCTCATTTCTTAGT 58.565 41.667 0.00 0.00 0.00 2.24
3381 3759 6.037610 CCCAATGCTCATTTCTTAGTACAGTC 59.962 42.308 0.00 0.00 0.00 3.51
3385 3763 9.944376 AATGCTCATTTCTTAGTACAGTCTTAA 57.056 29.630 0.00 0.00 0.00 1.85
3411 3789 9.903682 AAGCAAATACAATATGATGATGTAAGC 57.096 29.630 0.00 0.00 33.63 3.09
3426 3804 8.874744 ATGATGTAAGCATGCTATAAGGATTT 57.125 30.769 23.00 4.09 44.17 2.17
3427 3805 8.102800 TGATGTAAGCATGCTATAAGGATTTG 57.897 34.615 23.00 0.00 35.07 2.32
3428 3806 7.938490 TGATGTAAGCATGCTATAAGGATTTGA 59.062 33.333 23.00 0.00 35.07 2.69
3429 3807 8.696043 ATGTAAGCATGCTATAAGGATTTGAA 57.304 30.769 23.00 0.00 33.37 2.69
3430 3808 8.696043 TGTAAGCATGCTATAAGGATTTGAAT 57.304 30.769 23.00 1.95 0.00 2.57
3431 3809 9.791801 TGTAAGCATGCTATAAGGATTTGAATA 57.208 29.630 23.00 0.85 0.00 1.75
3470 3848 5.804692 TTTGAACGAAAACACTAGAAGCA 57.195 34.783 0.00 0.00 0.00 3.91
3471 3849 6.371809 TTTGAACGAAAACACTAGAAGCAT 57.628 33.333 0.00 0.00 0.00 3.79
3472 3850 5.591643 TGAACGAAAACACTAGAAGCATC 57.408 39.130 0.00 0.00 0.00 3.91
3473 3851 4.451096 TGAACGAAAACACTAGAAGCATCC 59.549 41.667 0.00 0.00 0.00 3.51
3474 3852 2.993899 ACGAAAACACTAGAAGCATCCG 59.006 45.455 0.00 0.00 0.00 4.18
3475 3853 3.250744 CGAAAACACTAGAAGCATCCGA 58.749 45.455 0.00 0.00 0.00 4.55
3476 3854 3.060895 CGAAAACACTAGAAGCATCCGAC 59.939 47.826 0.00 0.00 0.00 4.79
3477 3855 3.963428 AAACACTAGAAGCATCCGACT 57.037 42.857 0.00 0.00 0.00 4.18
3478 3856 3.963428 AACACTAGAAGCATCCGACTT 57.037 42.857 0.00 0.00 0.00 3.01
3479 3857 3.963428 ACACTAGAAGCATCCGACTTT 57.037 42.857 0.00 0.00 0.00 2.66
3480 3858 5.401531 AACACTAGAAGCATCCGACTTTA 57.598 39.130 0.00 0.00 0.00 1.85
3481 3859 5.401531 ACACTAGAAGCATCCGACTTTAA 57.598 39.130 0.00 0.00 0.00 1.52
3482 3860 5.790593 ACACTAGAAGCATCCGACTTTAAA 58.209 37.500 0.00 0.00 0.00 1.52
3483 3861 6.407202 ACACTAGAAGCATCCGACTTTAAAT 58.593 36.000 0.00 0.00 0.00 1.40
3484 3862 6.879458 ACACTAGAAGCATCCGACTTTAAATT 59.121 34.615 0.00 0.00 0.00 1.82
3485 3863 8.038944 ACACTAGAAGCATCCGACTTTAAATTA 58.961 33.333 0.00 0.00 0.00 1.40
3486 3864 8.879759 CACTAGAAGCATCCGACTTTAAATTAA 58.120 33.333 0.00 0.00 0.00 1.40
3487 3865 9.614792 ACTAGAAGCATCCGACTTTAAATTAAT 57.385 29.630 0.00 0.00 0.00 1.40
3492 3870 9.516314 AAGCATCCGACTTTAAATTAATAAAGC 57.484 29.630 9.63 4.04 43.53 3.51
3493 3871 8.135529 AGCATCCGACTTTAAATTAATAAAGCC 58.864 33.333 9.63 0.42 43.53 4.35
3494 3872 7.918562 GCATCCGACTTTAAATTAATAAAGCCA 59.081 33.333 9.63 0.00 43.53 4.75
3495 3873 9.233232 CATCCGACTTTAAATTAATAAAGCCAC 57.767 33.333 9.63 3.42 43.53 5.01
3496 3874 8.570068 TCCGACTTTAAATTAATAAAGCCACT 57.430 30.769 9.63 0.00 43.53 4.00
3497 3875 9.669887 TCCGACTTTAAATTAATAAAGCCACTA 57.330 29.630 9.63 0.00 43.53 2.74
3498 3876 9.931210 CCGACTTTAAATTAATAAAGCCACTAG 57.069 33.333 9.63 0.00 43.53 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.871077 GGTTAAACTCCCGCCAACG 59.129 57.895 0.00 0.00 39.67 4.10
11 12 1.871077 CGGTTAAACTCCCGCCAAC 59.129 57.895 0.00 0.00 37.43 3.77
12 13 4.382788 CGGTTAAACTCCCGCCAA 57.617 55.556 0.00 0.00 37.43 4.52
16 17 1.426041 CGATGGCGGTTAAACTCCCG 61.426 60.000 0.00 0.00 46.90 5.14
17 18 2.390427 CGATGGCGGTTAAACTCCC 58.610 57.895 0.00 0.00 0.00 4.30
28 29 0.870393 CCATGAAGATTCCGATGGCG 59.130 55.000 0.00 0.00 37.24 5.69
29 30 1.876156 GACCATGAAGATTCCGATGGC 59.124 52.381 10.37 2.96 35.34 4.40
30 31 2.138320 CGACCATGAAGATTCCGATGG 58.862 52.381 9.33 9.33 37.00 3.51
31 32 1.528586 GCGACCATGAAGATTCCGATG 59.471 52.381 0.00 0.00 0.00 3.84
32 33 1.414181 AGCGACCATGAAGATTCCGAT 59.586 47.619 0.00 0.00 0.00 4.18
33 34 0.824109 AGCGACCATGAAGATTCCGA 59.176 50.000 0.00 0.00 0.00 4.55
34 35 1.212616 GAGCGACCATGAAGATTCCG 58.787 55.000 0.00 0.00 0.00 4.30
35 36 1.587547 GGAGCGACCATGAAGATTCC 58.412 55.000 0.00 0.00 38.79 3.01
36 37 1.587547 GGGAGCGACCATGAAGATTC 58.412 55.000 0.00 0.00 41.20 2.52
37 38 0.179073 CGGGAGCGACCATGAAGATT 60.179 55.000 0.00 0.00 41.20 2.40
38 39 1.330655 ACGGGAGCGACCATGAAGAT 61.331 55.000 0.00 0.00 41.20 2.40
39 40 1.945354 GACGGGAGCGACCATGAAGA 61.945 60.000 0.00 0.00 41.20 2.87
40 41 1.519455 GACGGGAGCGACCATGAAG 60.519 63.158 0.00 0.00 41.20 3.02
41 42 2.577059 GACGGGAGCGACCATGAA 59.423 61.111 0.00 0.00 41.20 2.57
42 43 3.458163 GGACGGGAGCGACCATGA 61.458 66.667 0.00 0.00 41.20 3.07
43 44 3.770040 TGGACGGGAGCGACCATG 61.770 66.667 0.00 0.00 41.20 3.66
44 45 3.771160 GTGGACGGGAGCGACCAT 61.771 66.667 0.00 0.00 41.20 3.55
45 46 4.988716 AGTGGACGGGAGCGACCA 62.989 66.667 0.00 0.00 41.20 4.02
46 47 4.131088 GAGTGGACGGGAGCGACC 62.131 72.222 0.00 0.00 38.08 4.79
47 48 4.477975 CGAGTGGACGGGAGCGAC 62.478 72.222 0.00 0.00 0.00 5.19
49 50 4.477975 GACGAGTGGACGGGAGCG 62.478 72.222 0.00 0.00 37.61 5.03
50 51 3.053849 GAGACGAGTGGACGGGAGC 62.054 68.421 0.00 0.00 37.61 4.70
51 52 2.408241 GGAGACGAGTGGACGGGAG 61.408 68.421 0.00 0.00 37.61 4.30
52 53 2.360852 GGAGACGAGTGGACGGGA 60.361 66.667 0.00 0.00 37.61 5.14
53 54 2.273179 TTGGAGACGAGTGGACGGG 61.273 63.158 0.00 0.00 37.61 5.28
54 55 1.080705 GTTGGAGACGAGTGGACGG 60.081 63.158 0.00 0.00 37.61 4.79
55 56 4.554163 GTTGGAGACGAGTGGACG 57.446 61.111 0.00 0.00 39.31 4.79
112 113 3.812019 TTCGAGAGACGGGCGAGC 61.812 66.667 0.00 0.00 41.84 5.03
113 114 2.100603 GTTCGAGAGACGGGCGAG 59.899 66.667 0.00 0.00 41.84 5.03
114 115 3.796443 CGTTCGAGAGACGGGCGA 61.796 66.667 0.16 0.00 41.84 5.54
115 116 4.831307 CCGTTCGAGAGACGGGCG 62.831 72.222 17.49 0.00 44.96 6.13
116 117 3.398353 CTCCGTTCGAGAGACGGGC 62.398 68.421 23.11 0.00 46.99 6.13
117 118 2.792599 CTCCGTTCGAGAGACGGG 59.207 66.667 23.11 12.50 46.99 5.28
119 120 0.302288 CTAGCTCCGTTCGAGAGACG 59.698 60.000 4.46 2.85 41.63 4.18
120 121 0.028374 GCTAGCTCCGTTCGAGAGAC 59.972 60.000 7.70 0.00 41.63 3.36
121 122 0.107606 AGCTAGCTCCGTTCGAGAGA 60.108 55.000 12.68 0.00 41.63 3.10
122 123 1.529438 CTAGCTAGCTCCGTTCGAGAG 59.471 57.143 23.26 5.68 41.63 3.20
123 124 1.584175 CTAGCTAGCTCCGTTCGAGA 58.416 55.000 23.26 0.00 41.63 4.04
124 125 0.040781 GCTAGCTAGCTCCGTTCGAG 60.041 60.000 33.71 12.35 45.62 4.04
125 126 2.023318 GCTAGCTAGCTCCGTTCGA 58.977 57.895 33.71 0.00 45.62 3.71
126 127 4.618513 GCTAGCTAGCTCCGTTCG 57.381 61.111 33.71 5.19 45.62 3.95
142 143 1.455030 CGAATCGATTGAGCTAGCAGC 59.545 52.381 16.96 9.13 42.84 5.25
143 144 1.455030 GCGAATCGATTGAGCTAGCAG 59.545 52.381 16.96 0.87 0.00 4.24
144 145 1.202405 TGCGAATCGATTGAGCTAGCA 60.202 47.619 25.77 18.64 0.00 3.49
145 146 1.191204 GTGCGAATCGATTGAGCTAGC 59.809 52.381 25.77 6.62 0.00 3.42
146 147 1.449789 CGTGCGAATCGATTGAGCTAG 59.550 52.381 25.77 18.69 0.00 3.42
147 148 1.477105 CGTGCGAATCGATTGAGCTA 58.523 50.000 25.77 15.10 0.00 3.32
148 149 1.148157 CCGTGCGAATCGATTGAGCT 61.148 55.000 25.77 1.91 0.00 4.09
149 150 1.145759 TCCGTGCGAATCGATTGAGC 61.146 55.000 16.96 19.87 0.00 4.26
150 151 0.848942 CTCCGTGCGAATCGATTGAG 59.151 55.000 16.96 10.69 0.00 3.02
151 152 1.145759 GCTCCGTGCGAATCGATTGA 61.146 55.000 16.96 4.40 0.00 2.57
152 153 1.273887 GCTCCGTGCGAATCGATTG 59.726 57.895 16.96 9.13 0.00 2.67
153 154 3.706140 GCTCCGTGCGAATCGATT 58.294 55.556 11.20 11.20 0.00 3.34
170 171 0.309302 ACACGCATCGAGCTAGCTAG 59.691 55.000 19.38 18.55 42.61 3.42
171 172 0.308068 GACACGCATCGAGCTAGCTA 59.692 55.000 19.38 2.78 42.61 3.32
172 173 1.064946 GACACGCATCGAGCTAGCT 59.935 57.895 19.45 19.45 42.61 3.32
173 174 0.932585 GAGACACGCATCGAGCTAGC 60.933 60.000 6.62 6.62 42.61 3.42
174 175 0.317436 GGAGACACGCATCGAGCTAG 60.317 60.000 0.00 0.00 42.61 3.42
175 176 1.725557 GGGAGACACGCATCGAGCTA 61.726 60.000 0.00 0.00 42.61 3.32
176 177 2.492090 GGAGACACGCATCGAGCT 59.508 61.111 0.00 0.00 42.61 4.09
177 178 2.583593 GGGAGACACGCATCGAGC 60.584 66.667 0.00 0.00 40.87 5.03
178 179 2.278206 CGGGAGACACGCATCGAG 60.278 66.667 0.00 0.00 0.00 4.04
179 180 2.748647 TCGGGAGACACGCATCGA 60.749 61.111 0.00 0.00 0.00 3.59
246 247 4.452733 GAGGAAGACACGGGGCGG 62.453 72.222 0.00 0.00 0.00 6.13
247 248 4.796231 CGAGGAAGACACGGGGCG 62.796 72.222 0.00 0.00 0.00 6.13
248 249 3.644399 GACGAGGAAGACACGGGGC 62.644 68.421 0.00 0.00 0.00 5.80
249 250 2.572284 GACGAGGAAGACACGGGG 59.428 66.667 0.00 0.00 0.00 5.73
250 251 2.572284 GGACGAGGAAGACACGGG 59.428 66.667 0.00 0.00 0.00 5.28
251 252 2.178521 CGGACGAGGAAGACACGG 59.821 66.667 0.00 0.00 0.00 4.94
252 253 2.473664 AAGCGGACGAGGAAGACACG 62.474 60.000 0.00 0.00 0.00 4.49
253 254 1.009389 CAAGCGGACGAGGAAGACAC 61.009 60.000 0.00 0.00 0.00 3.67
254 255 1.289066 CAAGCGGACGAGGAAGACA 59.711 57.895 0.00 0.00 0.00 3.41
255 256 0.733223 GACAAGCGGACGAGGAAGAC 60.733 60.000 0.00 0.00 0.00 3.01
256 257 1.585006 GACAAGCGGACGAGGAAGA 59.415 57.895 0.00 0.00 0.00 2.87
257 258 1.446272 GGACAAGCGGACGAGGAAG 60.446 63.158 0.00 0.00 0.00 3.46
258 259 2.654877 GGACAAGCGGACGAGGAA 59.345 61.111 0.00 0.00 0.00 3.36
259 260 3.744719 CGGACAAGCGGACGAGGA 61.745 66.667 0.00 0.00 0.00 3.71
283 284 4.223964 GAAATCGACCAGCGCGGC 62.224 66.667 16.48 0.00 40.61 6.53
284 285 2.296692 CTTGAAATCGACCAGCGCGG 62.297 60.000 8.83 15.25 40.61 6.46
285 286 1.059369 CTTGAAATCGACCAGCGCG 59.941 57.895 0.00 0.00 40.61 6.86
286 287 0.517316 AACTTGAAATCGACCAGCGC 59.483 50.000 0.00 0.00 40.61 5.92
287 288 1.135972 CCAACTTGAAATCGACCAGCG 60.136 52.381 0.00 0.00 42.69 5.18
288 289 1.401539 GCCAACTTGAAATCGACCAGC 60.402 52.381 0.00 0.00 0.00 4.85
289 290 1.200020 GGCCAACTTGAAATCGACCAG 59.800 52.381 0.00 0.00 0.00 4.00
290 291 1.202879 AGGCCAACTTGAAATCGACCA 60.203 47.619 5.01 0.00 0.00 4.02
291 292 1.200020 CAGGCCAACTTGAAATCGACC 59.800 52.381 5.01 0.00 0.00 4.79
292 293 2.151202 TCAGGCCAACTTGAAATCGAC 58.849 47.619 5.01 0.00 0.00 4.20
293 294 2.426522 CTCAGGCCAACTTGAAATCGA 58.573 47.619 5.01 0.00 0.00 3.59
294 295 1.470098 CCTCAGGCCAACTTGAAATCG 59.530 52.381 5.01 0.00 0.00 3.34
295 296 2.795329 TCCTCAGGCCAACTTGAAATC 58.205 47.619 5.01 0.00 0.00 2.17
296 297 2.978156 TCCTCAGGCCAACTTGAAAT 57.022 45.000 5.01 0.00 0.00 2.17
297 298 2.174639 TCTTCCTCAGGCCAACTTGAAA 59.825 45.455 5.01 0.00 0.00 2.69
298 299 1.774254 TCTTCCTCAGGCCAACTTGAA 59.226 47.619 5.01 0.00 0.00 2.69
299 300 1.434188 TCTTCCTCAGGCCAACTTGA 58.566 50.000 5.01 0.00 0.00 3.02
300 301 2.089980 CATCTTCCTCAGGCCAACTTG 58.910 52.381 5.01 0.00 0.00 3.16
301 302 1.988107 TCATCTTCCTCAGGCCAACTT 59.012 47.619 5.01 0.00 0.00 2.66
302 303 1.280421 GTCATCTTCCTCAGGCCAACT 59.720 52.381 5.01 0.00 0.00 3.16
303 304 1.743996 GTCATCTTCCTCAGGCCAAC 58.256 55.000 5.01 0.00 0.00 3.77
304 305 0.250234 CGTCATCTTCCTCAGGCCAA 59.750 55.000 5.01 0.00 0.00 4.52
305 306 0.614697 TCGTCATCTTCCTCAGGCCA 60.615 55.000 5.01 0.00 0.00 5.36
306 307 0.179097 GTCGTCATCTTCCTCAGGCC 60.179 60.000 0.00 0.00 0.00 5.19
307 308 0.179097 GGTCGTCATCTTCCTCAGGC 60.179 60.000 0.00 0.00 0.00 4.85
308 309 1.186200 TGGTCGTCATCTTCCTCAGG 58.814 55.000 0.00 0.00 0.00 3.86
309 310 3.319137 TTTGGTCGTCATCTTCCTCAG 57.681 47.619 0.00 0.00 0.00 3.35
310 311 3.762407 TTTTGGTCGTCATCTTCCTCA 57.238 42.857 0.00 0.00 0.00 3.86
330 331 6.680148 AAATATACCCACAACTGGCTTTTT 57.320 33.333 0.00 0.00 36.00 1.94
331 332 7.179269 TCTAAATATACCCACAACTGGCTTTT 58.821 34.615 0.00 0.00 36.00 2.27
332 333 6.727394 TCTAAATATACCCACAACTGGCTTT 58.273 36.000 0.00 0.00 36.00 3.51
333 334 6.157994 TCTCTAAATATACCCACAACTGGCTT 59.842 38.462 0.00 0.00 36.00 4.35
334 335 5.665812 TCTCTAAATATACCCACAACTGGCT 59.334 40.000 0.00 0.00 36.00 4.75
335 336 5.925509 TCTCTAAATATACCCACAACTGGC 58.074 41.667 0.00 0.00 36.00 4.85
361 362 8.839343 CCCGTATAATTAACCCGTAAAAAGAAT 58.161 33.333 0.00 0.00 0.00 2.40
362 363 7.201688 GCCCGTATAATTAACCCGTAAAAAGAA 60.202 37.037 0.00 0.00 0.00 2.52
363 364 6.259829 GCCCGTATAATTAACCCGTAAAAAGA 59.740 38.462 0.00 0.00 0.00 2.52
364 365 6.260714 AGCCCGTATAATTAACCCGTAAAAAG 59.739 38.462 0.00 0.00 0.00 2.27
365 366 6.118852 AGCCCGTATAATTAACCCGTAAAAA 58.881 36.000 0.00 0.00 0.00 1.94
366 367 5.679601 AGCCCGTATAATTAACCCGTAAAA 58.320 37.500 0.00 0.00 0.00 1.52
367 368 5.070313 AGAGCCCGTATAATTAACCCGTAAA 59.930 40.000 0.00 0.00 0.00 2.01
368 369 4.588528 AGAGCCCGTATAATTAACCCGTAA 59.411 41.667 0.00 0.00 0.00 3.18
369 370 4.022068 CAGAGCCCGTATAATTAACCCGTA 60.022 45.833 0.00 0.00 0.00 4.02
370 371 2.967887 AGAGCCCGTATAATTAACCCGT 59.032 45.455 0.00 0.00 0.00 5.28
371 372 3.243975 ACAGAGCCCGTATAATTAACCCG 60.244 47.826 0.00 0.00 0.00 5.28
372 373 4.347360 ACAGAGCCCGTATAATTAACCC 57.653 45.455 0.00 0.00 0.00 4.11
373 374 4.446719 CGAACAGAGCCCGTATAATTAACC 59.553 45.833 0.00 0.00 0.00 2.85
374 375 4.446719 CCGAACAGAGCCCGTATAATTAAC 59.553 45.833 0.00 0.00 0.00 2.01
375 376 4.099881 ACCGAACAGAGCCCGTATAATTAA 59.900 41.667 0.00 0.00 0.00 1.40
376 377 3.638160 ACCGAACAGAGCCCGTATAATTA 59.362 43.478 0.00 0.00 0.00 1.40
377 378 2.433239 ACCGAACAGAGCCCGTATAATT 59.567 45.455 0.00 0.00 0.00 1.40
378 379 2.035576 GACCGAACAGAGCCCGTATAAT 59.964 50.000 0.00 0.00 0.00 1.28
379 380 1.406539 GACCGAACAGAGCCCGTATAA 59.593 52.381 0.00 0.00 0.00 0.98
380 381 1.027357 GACCGAACAGAGCCCGTATA 58.973 55.000 0.00 0.00 0.00 1.47
381 382 1.814527 GACCGAACAGAGCCCGTAT 59.185 57.895 0.00 0.00 0.00 3.06
382 383 2.693762 CGACCGAACAGAGCCCGTA 61.694 63.158 0.00 0.00 0.00 4.02
383 384 4.052229 CGACCGAACAGAGCCCGT 62.052 66.667 0.00 0.00 0.00 5.28
385 386 3.876589 TTGCGACCGAACAGAGCCC 62.877 63.158 0.00 0.00 0.00 5.19
386 387 2.357034 TTGCGACCGAACAGAGCC 60.357 61.111 0.00 0.00 0.00 4.70
387 388 0.388134 TAGTTGCGACCGAACAGAGC 60.388 55.000 0.00 0.00 0.00 4.09
388 389 2.060326 TTAGTTGCGACCGAACAGAG 57.940 50.000 0.00 0.00 0.00 3.35
389 390 2.512485 TTTAGTTGCGACCGAACAGA 57.488 45.000 0.00 0.00 0.00 3.41
390 391 3.806316 ATTTTAGTTGCGACCGAACAG 57.194 42.857 0.00 0.00 0.00 3.16
391 392 3.304123 CCAATTTTAGTTGCGACCGAACA 60.304 43.478 0.00 0.00 0.00 3.18
392 393 3.231160 CCAATTTTAGTTGCGACCGAAC 58.769 45.455 0.00 0.00 0.00 3.95
393 394 2.350964 GCCAATTTTAGTTGCGACCGAA 60.351 45.455 0.00 0.00 0.00 4.30
394 395 1.198178 GCCAATTTTAGTTGCGACCGA 59.802 47.619 0.00 0.00 0.00 4.69
395 396 1.613270 GCCAATTTTAGTTGCGACCG 58.387 50.000 0.00 0.00 0.00 4.79
396 397 1.403647 GGGCCAATTTTAGTTGCGACC 60.404 52.381 4.39 0.00 0.00 4.79
397 398 1.544246 AGGGCCAATTTTAGTTGCGAC 59.456 47.619 6.18 0.00 0.00 5.19
398 399 1.917872 AGGGCCAATTTTAGTTGCGA 58.082 45.000 6.18 0.00 0.00 5.10
399 400 2.741759 AAGGGCCAATTTTAGTTGCG 57.258 45.000 6.18 0.00 0.00 4.85
400 401 7.224557 CACATTATAAGGGCCAATTTTAGTTGC 59.775 37.037 6.18 0.00 0.00 4.17
401 402 8.257306 ACACATTATAAGGGCCAATTTTAGTTG 58.743 33.333 6.18 3.64 0.00 3.16
402 403 8.374184 ACACATTATAAGGGCCAATTTTAGTT 57.626 30.769 6.18 0.00 0.00 2.24
403 404 7.971368 ACACATTATAAGGGCCAATTTTAGT 57.029 32.000 6.18 0.00 0.00 2.24
404 405 9.665719 AAAACACATTATAAGGGCCAATTTTAG 57.334 29.630 6.18 0.00 0.00 1.85
406 407 8.932434 AAAAACACATTATAAGGGCCAATTTT 57.068 26.923 6.18 0.00 0.00 1.82
407 408 8.382405 AGAAAAACACATTATAAGGGCCAATTT 58.618 29.630 6.18 0.00 0.00 1.82
408 409 7.917003 AGAAAAACACATTATAAGGGCCAATT 58.083 30.769 6.18 0.40 0.00 2.32
409 410 7.494922 AGAAAAACACATTATAAGGGCCAAT 57.505 32.000 6.18 0.69 0.00 3.16
410 411 6.926630 AGAAAAACACATTATAAGGGCCAA 57.073 33.333 6.18 0.00 0.00 4.52
411 412 6.295575 CCAAGAAAAACACATTATAAGGGCCA 60.296 38.462 6.18 0.00 0.00 5.36
412 413 6.106003 CCAAGAAAAACACATTATAAGGGCC 58.894 40.000 0.00 0.00 0.00 5.80
413 414 5.580691 GCCAAGAAAAACACATTATAAGGGC 59.419 40.000 1.74 0.00 0.00 5.19
414 415 6.106003 GGCCAAGAAAAACACATTATAAGGG 58.894 40.000 0.00 0.00 0.00 3.95
415 416 6.106003 GGGCCAAGAAAAACACATTATAAGG 58.894 40.000 4.39 0.00 0.00 2.69
416 417 5.804979 CGGGCCAAGAAAAACACATTATAAG 59.195 40.000 4.39 0.00 0.00 1.73
417 418 5.244178 ACGGGCCAAGAAAAACACATTATAA 59.756 36.000 4.39 0.00 0.00 0.98
418 419 4.767928 ACGGGCCAAGAAAAACACATTATA 59.232 37.500 4.39 0.00 0.00 0.98
419 420 3.576550 ACGGGCCAAGAAAAACACATTAT 59.423 39.130 4.39 0.00 0.00 1.28
420 421 2.959707 ACGGGCCAAGAAAAACACATTA 59.040 40.909 4.39 0.00 0.00 1.90
421 422 1.760029 ACGGGCCAAGAAAAACACATT 59.240 42.857 4.39 0.00 0.00 2.71
422 423 1.408969 ACGGGCCAAGAAAAACACAT 58.591 45.000 4.39 0.00 0.00 3.21
423 424 2.054232 TACGGGCCAAGAAAAACACA 57.946 45.000 4.39 0.00 0.00 3.72
424 425 3.439895 TTTACGGGCCAAGAAAAACAC 57.560 42.857 4.39 0.00 0.00 3.32
425 426 3.194968 TGTTTTACGGGCCAAGAAAAACA 59.805 39.130 22.96 22.96 43.77 2.83
426 427 3.552699 GTGTTTTACGGGCCAAGAAAAAC 59.447 43.478 19.78 19.78 39.38 2.43
427 428 3.447944 AGTGTTTTACGGGCCAAGAAAAA 59.552 39.130 4.39 2.64 0.00 1.94
428 429 3.025262 AGTGTTTTACGGGCCAAGAAAA 58.975 40.909 4.39 4.36 0.00 2.29
429 430 2.657143 AGTGTTTTACGGGCCAAGAAA 58.343 42.857 4.39 0.00 0.00 2.52
430 431 2.351706 AGTGTTTTACGGGCCAAGAA 57.648 45.000 4.39 0.00 0.00 2.52
431 432 2.351706 AAGTGTTTTACGGGCCAAGA 57.648 45.000 4.39 0.00 0.00 3.02
432 433 4.201744 CGTATAAGTGTTTTACGGGCCAAG 60.202 45.833 4.39 0.00 36.09 3.61
433 434 3.683822 CGTATAAGTGTTTTACGGGCCAA 59.316 43.478 4.39 0.00 36.09 4.52
434 435 3.260740 CGTATAAGTGTTTTACGGGCCA 58.739 45.455 4.39 0.00 36.09 5.36
435 436 3.931285 CGTATAAGTGTTTTACGGGCC 57.069 47.619 0.00 0.00 36.09 5.80
439 440 3.000773 GCGACCCGTATAAGTGTTTTACG 60.001 47.826 0.00 3.56 38.67 3.18
440 441 3.925913 TGCGACCCGTATAAGTGTTTTAC 59.074 43.478 0.00 0.00 0.00 2.01
441 442 4.175516 CTGCGACCCGTATAAGTGTTTTA 58.824 43.478 0.00 0.00 0.00 1.52
442 443 2.997986 CTGCGACCCGTATAAGTGTTTT 59.002 45.455 0.00 0.00 0.00 2.43
443 444 2.028748 ACTGCGACCCGTATAAGTGTTT 60.029 45.455 0.00 0.00 0.00 2.83
444 445 1.547372 ACTGCGACCCGTATAAGTGTT 59.453 47.619 0.00 0.00 0.00 3.32
445 446 1.180029 ACTGCGACCCGTATAAGTGT 58.820 50.000 0.00 0.00 0.00 3.55
446 447 2.288961 AACTGCGACCCGTATAAGTG 57.711 50.000 0.00 0.00 0.00 3.16
447 448 3.323751 AAAACTGCGACCCGTATAAGT 57.676 42.857 0.00 0.00 0.00 2.24
448 449 4.269363 CCTTAAAACTGCGACCCGTATAAG 59.731 45.833 0.00 0.00 0.00 1.73
449 450 4.183101 CCTTAAAACTGCGACCCGTATAA 58.817 43.478 0.00 0.00 0.00 0.98
450 451 3.430651 CCCTTAAAACTGCGACCCGTATA 60.431 47.826 0.00 0.00 0.00 1.47
451 452 2.624636 CCTTAAAACTGCGACCCGTAT 58.375 47.619 0.00 0.00 0.00 3.06
452 453 1.338011 CCCTTAAAACTGCGACCCGTA 60.338 52.381 0.00 0.00 0.00 4.02
453 454 0.604511 CCCTTAAAACTGCGACCCGT 60.605 55.000 0.00 0.00 0.00 5.28
454 455 1.303091 CCCCTTAAAACTGCGACCCG 61.303 60.000 0.00 0.00 0.00 5.28
455 456 0.251033 ACCCCTTAAAACTGCGACCC 60.251 55.000 0.00 0.00 0.00 4.46
456 457 1.162698 GACCCCTTAAAACTGCGACC 58.837 55.000 0.00 0.00 0.00 4.79
457 458 1.804748 CAGACCCCTTAAAACTGCGAC 59.195 52.381 0.00 0.00 0.00 5.19
458 459 1.880646 GCAGACCCCTTAAAACTGCGA 60.881 52.381 0.00 0.00 42.92 5.10
459 460 0.521735 GCAGACCCCTTAAAACTGCG 59.478 55.000 0.00 0.00 42.92 5.18
461 462 4.223032 TCTCTAGCAGACCCCTTAAAACTG 59.777 45.833 0.00 0.00 0.00 3.16
462 463 4.426704 TCTCTAGCAGACCCCTTAAAACT 58.573 43.478 0.00 0.00 0.00 2.66
463 464 4.820894 TCTCTAGCAGACCCCTTAAAAC 57.179 45.455 0.00 0.00 0.00 2.43
464 465 4.384208 GCATCTCTAGCAGACCCCTTAAAA 60.384 45.833 0.00 0.00 32.26 1.52
465 466 3.134804 GCATCTCTAGCAGACCCCTTAAA 59.865 47.826 0.00 0.00 32.26 1.52
466 467 2.700897 GCATCTCTAGCAGACCCCTTAA 59.299 50.000 0.00 0.00 32.26 1.85
467 468 2.091055 AGCATCTCTAGCAGACCCCTTA 60.091 50.000 0.00 0.00 32.26 2.69
468 469 1.127343 GCATCTCTAGCAGACCCCTT 58.873 55.000 0.00 0.00 32.26 3.95
469 470 0.264359 AGCATCTCTAGCAGACCCCT 59.736 55.000 0.00 0.00 32.26 4.79
470 471 0.678950 GAGCATCTCTAGCAGACCCC 59.321 60.000 0.00 0.00 32.26 4.95
483 484 7.955864 CAGTTTAAGTACGGTTTTAAGAGCATC 59.044 37.037 0.00 0.00 0.00 3.91
484 485 7.443272 ACAGTTTAAGTACGGTTTTAAGAGCAT 59.557 33.333 0.00 0.00 0.00 3.79
485 486 6.762661 ACAGTTTAAGTACGGTTTTAAGAGCA 59.237 34.615 0.00 0.00 0.00 4.26
486 487 7.182361 ACAGTTTAAGTACGGTTTTAAGAGC 57.818 36.000 0.00 0.00 0.00 4.09
491 492 9.695884 CGTTTTTACAGTTTAAGTACGGTTTTA 57.304 29.630 0.00 0.00 0.00 1.52
492 493 8.233868 ACGTTTTTACAGTTTAAGTACGGTTTT 58.766 29.630 0.00 0.00 0.00 2.43
493 494 7.747888 ACGTTTTTACAGTTTAAGTACGGTTT 58.252 30.769 0.00 0.00 0.00 3.27
494 495 7.277760 AGACGTTTTTACAGTTTAAGTACGGTT 59.722 33.333 0.00 0.00 0.00 4.44
495 496 6.756542 AGACGTTTTTACAGTTTAAGTACGGT 59.243 34.615 0.00 0.00 0.00 4.83
496 497 7.165427 AGACGTTTTTACAGTTTAAGTACGG 57.835 36.000 0.00 0.00 0.00 4.02
505 506 8.943002 CCCTTGATATAAGACGTTTTTACAGTT 58.057 33.333 0.00 0.00 0.00 3.16
506 507 7.551617 CCCCTTGATATAAGACGTTTTTACAGT 59.448 37.037 0.00 0.00 0.00 3.55
507 508 7.466860 GCCCCTTGATATAAGACGTTTTTACAG 60.467 40.741 0.00 0.00 0.00 2.74
508 509 6.316890 GCCCCTTGATATAAGACGTTTTTACA 59.683 38.462 0.00 0.00 0.00 2.41
509 510 6.316890 TGCCCCTTGATATAAGACGTTTTTAC 59.683 38.462 0.00 0.00 0.00 2.01
510 511 6.416415 TGCCCCTTGATATAAGACGTTTTTA 58.584 36.000 0.00 0.00 0.00 1.52
511 512 5.258051 TGCCCCTTGATATAAGACGTTTTT 58.742 37.500 0.00 0.00 0.00 1.94
512 513 4.850680 TGCCCCTTGATATAAGACGTTTT 58.149 39.130 0.00 0.00 0.00 2.43
513 514 4.497291 TGCCCCTTGATATAAGACGTTT 57.503 40.909 0.00 0.00 0.00 3.60
514 515 4.497291 TTGCCCCTTGATATAAGACGTT 57.503 40.909 0.00 0.00 0.00 3.99
515 516 4.080526 ACTTTGCCCCTTGATATAAGACGT 60.081 41.667 0.00 0.00 0.00 4.34
516 517 4.273480 CACTTTGCCCCTTGATATAAGACG 59.727 45.833 0.00 0.00 0.00 4.18
517 518 5.437060 TCACTTTGCCCCTTGATATAAGAC 58.563 41.667 0.00 0.00 0.00 3.01
518 519 5.684704 CTCACTTTGCCCCTTGATATAAGA 58.315 41.667 0.00 0.00 0.00 2.10
519 520 4.276926 GCTCACTTTGCCCCTTGATATAAG 59.723 45.833 0.00 0.00 0.00 1.73
520 521 4.207165 GCTCACTTTGCCCCTTGATATAA 58.793 43.478 0.00 0.00 0.00 0.98
521 522 3.201930 TGCTCACTTTGCCCCTTGATATA 59.798 43.478 0.00 0.00 0.00 0.86
522 523 2.025037 TGCTCACTTTGCCCCTTGATAT 60.025 45.455 0.00 0.00 0.00 1.63
523 524 1.354031 TGCTCACTTTGCCCCTTGATA 59.646 47.619 0.00 0.00 0.00 2.15
524 525 0.112995 TGCTCACTTTGCCCCTTGAT 59.887 50.000 0.00 0.00 0.00 2.57
525 526 0.823356 GTGCTCACTTTGCCCCTTGA 60.823 55.000 0.00 0.00 0.00 3.02
526 527 1.108727 TGTGCTCACTTTGCCCCTTG 61.109 55.000 1.47 0.00 0.00 3.61
527 528 0.396974 TTGTGCTCACTTTGCCCCTT 60.397 50.000 1.47 0.00 0.00 3.95
528 529 1.109323 GTTGTGCTCACTTTGCCCCT 61.109 55.000 1.47 0.00 0.00 4.79
529 530 1.363807 GTTGTGCTCACTTTGCCCC 59.636 57.895 1.47 0.00 0.00 5.80
530 531 0.459489 TTGTTGTGCTCACTTTGCCC 59.541 50.000 1.47 0.00 0.00 5.36
531 532 2.292103 TTTGTTGTGCTCACTTTGCC 57.708 45.000 1.47 0.00 0.00 4.52
532 533 4.863152 ATTTTTGTTGTGCTCACTTTGC 57.137 36.364 1.47 0.00 0.00 3.68
550 551 9.607988 TCGGTGTGTACATCAATCTAAATATTT 57.392 29.630 5.89 5.89 0.00 1.40
551 552 9.607988 TTCGGTGTGTACATCAATCTAAATATT 57.392 29.630 0.00 0.00 0.00 1.28
552 553 9.607988 TTTCGGTGTGTACATCAATCTAAATAT 57.392 29.630 0.00 0.00 0.00 1.28
553 554 9.438228 TTTTCGGTGTGTACATCAATCTAAATA 57.562 29.630 0.00 0.00 0.00 1.40
554 555 7.915293 TTTCGGTGTGTACATCAATCTAAAT 57.085 32.000 0.00 0.00 0.00 1.40
555 556 7.226918 TGTTTTCGGTGTGTACATCAATCTAAA 59.773 33.333 0.00 0.00 0.00 1.85
556 557 6.706716 TGTTTTCGGTGTGTACATCAATCTAA 59.293 34.615 0.00 0.00 0.00 2.10
557 558 6.224584 TGTTTTCGGTGTGTACATCAATCTA 58.775 36.000 0.00 0.00 0.00 1.98
558 559 5.060506 TGTTTTCGGTGTGTACATCAATCT 58.939 37.500 0.00 0.00 0.00 2.40
559 560 5.049680 ACTGTTTTCGGTGTGTACATCAATC 60.050 40.000 0.00 0.00 38.10 2.67
560 561 4.819630 ACTGTTTTCGGTGTGTACATCAAT 59.180 37.500 0.00 0.00 38.10 2.57
561 562 4.193090 ACTGTTTTCGGTGTGTACATCAA 58.807 39.130 0.00 0.00 38.10 2.57
562 563 3.799366 ACTGTTTTCGGTGTGTACATCA 58.201 40.909 0.00 0.00 38.10 3.07
563 564 3.805422 TGACTGTTTTCGGTGTGTACATC 59.195 43.478 0.00 0.00 39.83 3.06
564 565 3.799366 TGACTGTTTTCGGTGTGTACAT 58.201 40.909 0.00 0.00 39.83 2.29
565 566 3.248495 TGACTGTTTTCGGTGTGTACA 57.752 42.857 0.00 0.00 39.83 2.90
566 567 3.805422 TCATGACTGTTTTCGGTGTGTAC 59.195 43.478 0.00 0.00 39.83 2.90
567 568 4.055360 CTCATGACTGTTTTCGGTGTGTA 58.945 43.478 0.00 0.00 39.83 2.90
568 569 2.872245 CTCATGACTGTTTTCGGTGTGT 59.128 45.455 0.00 0.00 39.83 3.72
569 570 2.349817 GCTCATGACTGTTTTCGGTGTG 60.350 50.000 0.00 0.00 39.83 3.82
570 571 1.873591 GCTCATGACTGTTTTCGGTGT 59.126 47.619 0.00 0.00 39.83 4.16
571 572 1.872952 TGCTCATGACTGTTTTCGGTG 59.127 47.619 0.00 0.00 39.83 4.94
572 573 2.254546 TGCTCATGACTGTTTTCGGT 57.745 45.000 0.00 0.00 42.81 4.69
573 574 5.490139 AATATGCTCATGACTGTTTTCGG 57.510 39.130 0.00 0.00 0.00 4.30
574 575 7.253092 CGAAAAATATGCTCATGACTGTTTTCG 60.253 37.037 19.24 19.24 44.37 3.46
575 576 7.538678 ACGAAAAATATGCTCATGACTGTTTTC 59.461 33.333 0.00 2.46 32.02 2.29
576 577 7.370383 ACGAAAAATATGCTCATGACTGTTTT 58.630 30.769 0.00 0.00 0.00 2.43
577 578 6.913170 ACGAAAAATATGCTCATGACTGTTT 58.087 32.000 0.00 0.00 0.00 2.83
578 579 6.500684 ACGAAAAATATGCTCATGACTGTT 57.499 33.333 0.00 0.00 0.00 3.16
579 580 6.500684 AACGAAAAATATGCTCATGACTGT 57.499 33.333 0.00 0.00 0.00 3.55
580 581 7.022979 TCAAACGAAAAATATGCTCATGACTG 58.977 34.615 0.00 0.00 0.00 3.51
581 582 7.144722 TCAAACGAAAAATATGCTCATGACT 57.855 32.000 0.00 0.00 0.00 3.41
582 583 7.795431 TTCAAACGAAAAATATGCTCATGAC 57.205 32.000 0.00 0.00 0.00 3.06
583 584 8.809159 TTTTCAAACGAAAAATATGCTCATGA 57.191 26.923 0.00 0.00 38.98 3.07
599 600 6.175087 GCATTTGTACTGTGTTTTTCAAACG 58.825 36.000 0.00 0.00 0.00 3.60
616 617 8.249638 TGTATATGTACAAGCATTTGCATTTGT 58.750 29.630 12.81 12.81 40.78 2.83
621 622 8.443953 TGTATGTATATGTACAAGCATTTGCA 57.556 30.769 6.39 0.00 43.60 4.08
650 651 7.596494 CCTCCGTGCATTCATAAATGATAAAT 58.404 34.615 0.00 0.00 44.25 1.40
651 652 6.514870 GCCTCCGTGCATTCATAAATGATAAA 60.515 38.462 0.00 0.00 44.25 1.40
652 653 5.048782 GCCTCCGTGCATTCATAAATGATAA 60.049 40.000 0.00 0.00 44.25 1.75
655 656 2.618241 GCCTCCGTGCATTCATAAATGA 59.382 45.455 0.00 0.00 44.25 2.57
657 658 2.358898 GTGCCTCCGTGCATTCATAAAT 59.641 45.455 0.00 0.00 44.30 1.40
671 672 0.462047 CGATGGTAGGTTGTGCCTCC 60.462 60.000 0.00 0.00 46.96 4.30
674 675 0.535335 TCTCGATGGTAGGTTGTGCC 59.465 55.000 0.00 0.00 37.58 5.01
675 676 1.476891 TCTCTCGATGGTAGGTTGTGC 59.523 52.381 0.00 0.00 0.00 4.57
687 690 0.466372 TGCCGACTCCATCTCTCGAT 60.466 55.000 0.00 0.00 0.00 3.59
690 693 2.509569 TCTATGCCGACTCCATCTCTC 58.490 52.381 0.00 0.00 0.00 3.20
715 722 4.207635 TGAATTACACGTGACGACTTTGTC 59.792 41.667 25.01 7.05 39.37 3.18
718 726 6.154445 ACTATGAATTACACGTGACGACTTT 58.846 36.000 25.01 6.59 0.00 2.66
862 880 2.167693 CGTCAGCAAGATAGGTTGGGTA 59.832 50.000 0.00 0.00 0.00 3.69
889 908 5.559608 CGTGCACCAGAATAAATGAGCATAG 60.560 44.000 12.15 0.00 33.35 2.23
1080 1134 2.413453 CGAGAAAAAGAAGAAGAGGCGG 59.587 50.000 0.00 0.00 0.00 6.13
1095 1149 1.530013 GACCGAGGTGGACCGAGAAA 61.530 60.000 0.00 0.00 42.00 2.52
1096 1150 1.975407 GACCGAGGTGGACCGAGAA 60.975 63.158 0.00 0.00 42.00 2.87
1355 1409 4.574674 AATGATCTTGTACTTGGCCTGA 57.425 40.909 3.32 0.00 0.00 3.86
1442 1509 5.220172 CGTATGATGCATAGAAAGAGCGATG 60.220 44.000 0.00 0.00 0.00 3.84
1446 1513 3.742882 TGCGTATGATGCATAGAAAGAGC 59.257 43.478 0.00 0.54 34.76 4.09
1447 1514 5.118357 GTCTGCGTATGATGCATAGAAAGAG 59.882 44.000 0.00 0.00 39.71 2.85
1451 1518 3.004315 TCGTCTGCGTATGATGCATAGAA 59.996 43.478 0.00 0.00 39.71 2.10
1458 1537 1.854743 CTGGTTCGTCTGCGTATGATG 59.145 52.381 0.00 0.00 39.49 3.07
1487 1566 3.859443 AGTGCAGCTCAAGACTATTCAG 58.141 45.455 0.00 0.00 0.00 3.02
1491 1570 2.830923 ACAGAGTGCAGCTCAAGACTAT 59.169 45.455 15.59 0.00 46.47 2.12
1493 1572 1.047002 ACAGAGTGCAGCTCAAGACT 58.953 50.000 15.59 0.00 46.47 3.24
1495 1574 1.690893 AGAACAGAGTGCAGCTCAAGA 59.309 47.619 15.59 0.00 46.47 3.02
1496 1575 2.067766 GAGAACAGAGTGCAGCTCAAG 58.932 52.381 15.59 11.00 46.47 3.02
1498 1577 1.000618 CTGAGAACAGAGTGCAGCTCA 59.999 52.381 15.59 0.00 46.47 4.26
1499 1578 1.672441 CCTGAGAACAGAGTGCAGCTC 60.672 57.143 7.88 7.88 46.03 4.09
1500 1579 0.321021 CCTGAGAACAGAGTGCAGCT 59.679 55.000 0.00 0.00 46.03 4.24
1502 1581 0.036577 CCCCTGAGAACAGAGTGCAG 60.037 60.000 0.00 0.00 46.03 4.41
1503 1582 2.061220 CCCCTGAGAACAGAGTGCA 58.939 57.895 0.00 0.00 46.03 4.57
1504 1583 1.376553 GCCCCTGAGAACAGAGTGC 60.377 63.158 0.00 0.00 46.03 4.40
1505 1584 0.036577 CAGCCCCTGAGAACAGAGTG 60.037 60.000 0.00 0.00 46.03 3.51
1530 1613 0.464554 GCAGGTAGATGCCCAGTTCC 60.465 60.000 0.00 0.00 40.43 3.62
1629 1714 4.379243 AGGTTGTCGGCCAGCTCG 62.379 66.667 2.24 0.00 0.00 5.03
1760 1847 1.834188 GTCACAGGTTGTAATGGGGG 58.166 55.000 0.00 0.00 0.00 5.40
1768 1855 2.981859 AGAAAGACGTCACAGGTTGT 57.018 45.000 19.50 0.00 0.00 3.32
1785 1872 4.473196 TGGGAAGATGCAGTATGGTTAAGA 59.527 41.667 0.00 0.00 35.86 2.10
1786 1873 4.780815 TGGGAAGATGCAGTATGGTTAAG 58.219 43.478 0.00 0.00 35.86 1.85
1787 1874 4.853468 TGGGAAGATGCAGTATGGTTAA 57.147 40.909 0.00 0.00 35.86 2.01
1788 1875 4.717877 CATGGGAAGATGCAGTATGGTTA 58.282 43.478 0.00 0.00 35.86 2.85
1789 1876 3.559069 CATGGGAAGATGCAGTATGGTT 58.441 45.455 0.00 0.00 35.86 3.67
1790 1877 2.750807 GCATGGGAAGATGCAGTATGGT 60.751 50.000 0.00 0.00 46.77 3.55
1791 1878 1.884579 GCATGGGAAGATGCAGTATGG 59.115 52.381 0.00 0.00 46.77 2.74
1813 1900 2.431683 CCGCCCGATTCCATCCAT 59.568 61.111 0.00 0.00 0.00 3.41
1814 1901 4.562425 GCCGCCCGATTCCATCCA 62.562 66.667 0.00 0.00 0.00 3.41
2051 2152 1.743252 CTGAGCGGCTTGTCTTCCC 60.743 63.158 2.97 0.00 0.00 3.97
2100 2201 6.644347 TCAAGTTCAAGTGTTCTTCTCTCTT 58.356 36.000 0.00 0.00 0.00 2.85
2101 2202 6.227298 TCAAGTTCAAGTGTTCTTCTCTCT 57.773 37.500 0.00 0.00 0.00 3.10
2102 2203 6.910536 TTCAAGTTCAAGTGTTCTTCTCTC 57.089 37.500 0.00 0.00 0.00 3.20
2103 2204 7.050377 TCATTCAAGTTCAAGTGTTCTTCTCT 58.950 34.615 0.00 0.00 0.00 3.10
2104 2205 7.251704 TCATTCAAGTTCAAGTGTTCTTCTC 57.748 36.000 0.00 0.00 0.00 2.87
2105 2206 7.337942 AGTTCATTCAAGTTCAAGTGTTCTTCT 59.662 33.333 0.00 0.00 0.00 2.85
2106 2207 7.475840 AGTTCATTCAAGTTCAAGTGTTCTTC 58.524 34.615 0.00 0.00 0.00 2.87
2134 2238 9.069082 GTCAGATCAGGAGCTTAATTACTACTA 57.931 37.037 0.00 0.00 0.00 1.82
2140 2244 4.342378 AGCGTCAGATCAGGAGCTTAATTA 59.658 41.667 0.00 0.00 0.00 1.40
2172 2276 1.686355 ACATCACCCGAACAAGCAAA 58.314 45.000 0.00 0.00 0.00 3.68
2192 2296 1.301244 CTGCGTGACCTGCTTCTGT 60.301 57.895 0.00 0.00 0.00 3.41
2306 2410 1.374125 CACCTTCACATCGTCGCCA 60.374 57.895 0.00 0.00 0.00 5.69
2345 2449 0.532862 CAACAGGCACGAACAGGTCT 60.533 55.000 0.00 0.00 0.00 3.85
2372 2476 0.811616 GCCTCTTGCTGATGTACCGG 60.812 60.000 0.00 0.00 36.87 5.28
2614 2721 6.537301 TCGAAGTGCATAGTATTAAAACAGGG 59.463 38.462 0.00 0.00 0.00 4.45
2622 2729 7.309012 GGGTACATCTCGAAGTGCATAGTATTA 60.309 40.741 0.00 0.00 0.00 0.98
2623 2730 6.448006 GGTACATCTCGAAGTGCATAGTATT 58.552 40.000 0.00 0.00 0.00 1.89
2624 2731 5.047943 GGGTACATCTCGAAGTGCATAGTAT 60.048 44.000 0.00 0.00 0.00 2.12
2627 2734 3.319405 AGGGTACATCTCGAAGTGCATAG 59.681 47.826 0.00 0.00 0.00 2.23
2641 2748 0.620556 CTTGGCACTGGAGGGTACAT 59.379 55.000 0.00 0.00 0.00 2.29
2647 2757 1.228367 AGCAACTTGGCACTGGAGG 60.228 57.895 0.00 0.00 35.83 4.30
2648 2758 1.954528 CAGCAACTTGGCACTGGAG 59.045 57.895 0.00 0.00 35.83 3.86
2672 2782 8.611757 CCACGTTTCAGTATTTGATTGATATGA 58.388 33.333 0.00 0.00 35.27 2.15
2673 2783 8.397906 ACCACGTTTCAGTATTTGATTGATATG 58.602 33.333 0.00 0.00 35.27 1.78
2721 2831 3.423571 CACGCTCATCTCTGCAATTTTC 58.576 45.455 0.00 0.00 0.00 2.29
2729 2839 0.031857 CTAGGGCACGCTCATCTCTG 59.968 60.000 0.00 0.00 0.00 3.35
2736 2846 2.813200 GGTACCTAGGGCACGCTC 59.187 66.667 14.81 0.00 0.00 5.03
2941 3077 7.531857 TCATAAATGCTCAAGGGTTTACAAA 57.468 32.000 0.00 0.00 0.00 2.83
2944 3080 6.919721 TGTTCATAAATGCTCAAGGGTTTAC 58.080 36.000 0.00 0.00 0.00 2.01
2945 3081 7.232534 AGTTGTTCATAAATGCTCAAGGGTTTA 59.767 33.333 0.00 0.00 0.00 2.01
2946 3082 6.041979 AGTTGTTCATAAATGCTCAAGGGTTT 59.958 34.615 0.00 0.00 0.00 3.27
2947 3083 5.539955 AGTTGTTCATAAATGCTCAAGGGTT 59.460 36.000 0.00 0.00 0.00 4.11
2948 3084 5.079643 AGTTGTTCATAAATGCTCAAGGGT 58.920 37.500 0.00 0.00 0.00 4.34
2949 3085 5.649782 AGTTGTTCATAAATGCTCAAGGG 57.350 39.130 0.00 0.00 0.00 3.95
2964 3100 7.696992 TCCCAGTGGAATAAAATAGTTGTTC 57.303 36.000 11.95 0.00 37.86 3.18
2979 3115 1.202927 CCTTGAGCTTTTCCCAGTGGA 60.203 52.381 11.95 0.00 39.54 4.02
2980 3116 1.251251 CCTTGAGCTTTTCCCAGTGG 58.749 55.000 0.63 0.63 0.00 4.00
2981 3117 1.251251 CCCTTGAGCTTTTCCCAGTG 58.749 55.000 0.00 0.00 0.00 3.66
2982 3118 0.853530 ACCCTTGAGCTTTTCCCAGT 59.146 50.000 0.00 0.00 0.00 4.00
2983 3119 1.074566 AGACCCTTGAGCTTTTCCCAG 59.925 52.381 0.00 0.00 0.00 4.45
2984 3120 1.149101 AGACCCTTGAGCTTTTCCCA 58.851 50.000 0.00 0.00 0.00 4.37
2985 3121 2.294449 AAGACCCTTGAGCTTTTCCC 57.706 50.000 0.00 0.00 0.00 3.97
2986 3122 3.800261 GCAAAAGACCCTTGAGCTTTTCC 60.800 47.826 0.00 0.00 39.16 3.13
2987 3123 3.068732 AGCAAAAGACCCTTGAGCTTTTC 59.931 43.478 0.00 0.00 39.16 2.29
2988 3124 3.033909 AGCAAAAGACCCTTGAGCTTTT 58.966 40.909 0.00 0.00 41.14 2.27
2989 3125 2.625314 GAGCAAAAGACCCTTGAGCTTT 59.375 45.455 0.00 0.00 33.59 3.51
2990 3126 2.234143 GAGCAAAAGACCCTTGAGCTT 58.766 47.619 0.00 0.00 0.00 3.74
2991 3127 1.879796 CGAGCAAAAGACCCTTGAGCT 60.880 52.381 0.00 0.00 0.00 4.09
2992 3128 0.519077 CGAGCAAAAGACCCTTGAGC 59.481 55.000 0.00 0.00 0.00 4.26
2993 3129 1.884235 ACGAGCAAAAGACCCTTGAG 58.116 50.000 0.00 0.00 0.00 3.02
2994 3130 2.289444 CCTACGAGCAAAAGACCCTTGA 60.289 50.000 0.00 0.00 0.00 3.02
2995 3131 2.076863 CCTACGAGCAAAAGACCCTTG 58.923 52.381 0.00 0.00 0.00 3.61
2996 3132 1.003233 CCCTACGAGCAAAAGACCCTT 59.997 52.381 0.00 0.00 0.00 3.95
2997 3133 0.613777 CCCTACGAGCAAAAGACCCT 59.386 55.000 0.00 0.00 0.00 4.34
3010 3146 1.443407 CACCAGGCTGATCCCTACG 59.557 63.158 17.94 0.00 32.78 3.51
3026 3165 3.896479 GCTAGGACAAGCAGCCAC 58.104 61.111 0.00 0.00 42.30 5.01
3105 3483 7.065443 GGATAGTACCGTGCTTTGAAACTTTAT 59.935 37.037 0.00 0.00 0.00 1.40
3143 3521 7.497249 GCATATCTAGTCCTGAAAAGTGACATT 59.503 37.037 0.00 0.00 0.00 2.71
3210 3588 9.450807 GGATGTTTTCTTTATCCATTTATGTCG 57.549 33.333 0.00 0.00 40.07 4.35
3297 3675 1.754803 TGATACACTCGGGGACATGTC 59.245 52.381 17.91 17.91 0.00 3.06
3306 3684 4.935205 TCCAAAATCAAGTGATACACTCGG 59.065 41.667 4.88 1.86 44.62 4.63
3307 3685 6.480524 TTCCAAAATCAAGTGATACACTCG 57.519 37.500 4.88 0.00 44.62 4.18
3329 3707 2.818432 CCTCAAAAGTGCAGCTCTGATT 59.182 45.455 0.00 0.00 0.00 2.57
3359 3737 9.944376 TTAAGACTGTACTAAGAAATGAGCATT 57.056 29.630 0.00 0.00 0.00 3.56
3385 3763 9.903682 GCTTACATCATCATATTGTATTTGCTT 57.096 29.630 0.00 0.00 0.00 3.91
3399 3777 7.008021 TCCTTATAGCATGCTTACATCATCA 57.992 36.000 28.02 4.20 32.87 3.07
3401 3779 8.737175 CAAATCCTTATAGCATGCTTACATCAT 58.263 33.333 28.02 14.50 32.87 2.45
3446 3824 6.613233 TGCTTCTAGTGTTTTCGTTCAAAAA 58.387 32.000 0.00 0.00 35.68 1.94
3447 3825 6.184580 TGCTTCTAGTGTTTTCGTTCAAAA 57.815 33.333 0.00 0.00 0.00 2.44
3448 3826 5.804692 TGCTTCTAGTGTTTTCGTTCAAA 57.195 34.783 0.00 0.00 0.00 2.69
3449 3827 5.049680 GGATGCTTCTAGTGTTTTCGTTCAA 60.050 40.000 0.00 0.00 0.00 2.69
3450 3828 4.451096 GGATGCTTCTAGTGTTTTCGTTCA 59.549 41.667 0.00 0.00 0.00 3.18
3451 3829 4.434330 CGGATGCTTCTAGTGTTTTCGTTC 60.434 45.833 0.00 0.00 0.00 3.95
3452 3830 3.432252 CGGATGCTTCTAGTGTTTTCGTT 59.568 43.478 0.00 0.00 0.00 3.85
3453 3831 2.993899 CGGATGCTTCTAGTGTTTTCGT 59.006 45.455 0.00 0.00 0.00 3.85
3454 3832 3.060895 GTCGGATGCTTCTAGTGTTTTCG 59.939 47.826 0.00 0.00 0.00 3.46
3455 3833 4.246458 AGTCGGATGCTTCTAGTGTTTTC 58.754 43.478 0.00 0.00 0.00 2.29
3456 3834 4.273148 AGTCGGATGCTTCTAGTGTTTT 57.727 40.909 0.00 0.00 0.00 2.43
3457 3835 3.963428 AGTCGGATGCTTCTAGTGTTT 57.037 42.857 0.00 0.00 0.00 2.83
3458 3836 3.963428 AAGTCGGATGCTTCTAGTGTT 57.037 42.857 0.00 0.00 0.00 3.32
3459 3837 3.963428 AAAGTCGGATGCTTCTAGTGT 57.037 42.857 0.00 0.00 0.00 3.55
3460 3838 6.910536 ATTTAAAGTCGGATGCTTCTAGTG 57.089 37.500 0.00 0.00 0.00 2.74
3461 3839 9.614792 ATTAATTTAAAGTCGGATGCTTCTAGT 57.385 29.630 0.00 0.00 0.00 2.57
3466 3844 9.516314 GCTTTATTAATTTAAAGTCGGATGCTT 57.484 29.630 10.84 0.00 40.02 3.91
3467 3845 8.135529 GGCTTTATTAATTTAAAGTCGGATGCT 58.864 33.333 10.84 0.00 40.02 3.79
3468 3846 7.918562 TGGCTTTATTAATTTAAAGTCGGATGC 59.081 33.333 9.60 0.00 43.51 3.91
3469 3847 9.233232 GTGGCTTTATTAATTTAAAGTCGGATG 57.767 33.333 9.60 0.00 43.51 3.51
3470 3848 9.185680 AGTGGCTTTATTAATTTAAAGTCGGAT 57.814 29.630 9.60 0.00 43.51 4.18
3471 3849 8.570068 AGTGGCTTTATTAATTTAAAGTCGGA 57.430 30.769 9.60 0.00 43.51 4.55
3472 3850 9.931210 CTAGTGGCTTTATTAATTTAAAGTCGG 57.069 33.333 9.60 0.12 43.51 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.