>input_sequence_49833
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ATGCCGGCCGGTGAGCCCCTCCCCGGCCGTGGTGCCAGCAGCAGGCCTGCAGCGCCGGCCACAGCGT
ACTCTGGTCATCACCGCCTCTTCTTCTTTTTCTCGGTCCACCTCGGTCGTTCTGGCTCGCTTGACCAAGCAAAGATTTAT
CCATGGCTGACTTTTCTTATCCCACAGGCGTTGCCAAGAAGCTGCCACTGGCTCTGCTCGTGTTCTTCTCGGCACTGCTC
TACAACCAGATTCAGCCGCCGCCGCCAAAGGTCCCTGGCTCGCCGGGCGGGCCTCCGATCACGGCAAACCGGACAAAGCT
CAGGGACGGCAGGCACCTGGCCTACCTGGAATCCGGCGTCCCAAAGGATCAGGCCAAGTACAAGATCATTTTCGTCCATG
GCTTCTTCTGCTGCAGATACGACGTGCTCAACGTCTCCCAGGTACA--------GGGA-----TTTGGCATCGCTCTTTC
T------------ATGCATCATACGCAGACGAACCAGAGAGTTGACTGAATAGTCTTGAGCTGCACTCTGTTCT----CA
GGGGCTGCTACAGGAACTGGGCATCTACC--TGCTGTCCTTCGACCGGCCGGGGTACTGCGAGAGCGACGCGCACCCGGC
GCGGACGGAGGAGAGCATCGCCGTCGACATCGCCGAGCTGGCCGACAACCTGCAGCTGGGGCCCCGGTTCCACCTCATGG
GCTTCTCCATGGGCGGCGAGATCATGTGGAGCTGCCTCAAGCACATCCCGCACAGGTAAC--AAGTGCTGGAATCCCATC
TTCTCCCCCCCATTACAACCTGTGACGTCTTTCTTAACCATACTGCATCTTCCCATGCCATGGATGGAATCGGGCGGCG-
-------------CAGGCTCGCCGGCGTGGCCATTCTCGCGCCGGTAGGCAACTACTGGTGGTCCGGCCTGCCGCCGGAC
GTGTACCAGGAGGCGTGGTACGTGCAGTTCCCGCAAGACCGAGCCGCCGTCTGGGTCGCCCACCACCTCCCGTGGCTGGC
CAACTGGTGGAACACCCAGAGGCTGTTCCCAAGCTCCAGCGTCAAGGCCCGCAACCCCGCCATCTACTCCAGGGAAGACA
AGCCGCTCAGCGCCAAATTCGCCCAGCGAGCCCACAATGCAAGAGAGAAGAACA---CTTGAACTTGAATGAACTACTAG
TAGTAATTAAGCTCCTGATCTGACGCTTTGGTTTGTTTGCTTGTTCGGGTGATGTACAGAAGCAGGTCACGCAGCAAGGG
GAGCACGAGTCCCTGCACCGGGACATGATCGTCGGGTTCGGGAAGTGGGGATGGAGCCCGCTGCAGCCGGGCAACCCGTT
CGCCGGCGTTGGCGACGATGTGAAGGTGCACCTGTGGCACGGAGTCGAAGACCTGTTCGTGCCTGTTGCCCTGTCCCGGT
ACATCAGCAAGAGGCTCCCCTGGGTGATCTACCACGAGCTCCCGACGGCCGGCCACCTGTTCCCGGTCGCCGACGGGATG
CCCGACGTCATCGTCAAGTCGCTGCTGCTCGGAGACGGGTGA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr1D_1_TraesCS1D01G269000
CACGAACCACCGTTGGCGGGAGTTTAACCGCCATCGGAATCTTCATGGTCGCTCCCGTCCACTCGTCTCCAACGCCAGCC
GCGCGCCCGCGGCCCTTCGCCCCGGCTGCCGCGCTCGCCCGTCTCTCGAACGGAGCTAGCTAGCTGCTAGCTCAATCGAT
TCGCACGGAGCTAGCTAGCTCGATGCGTGTCTCCCGACGGCGGCCGCGCCCGCCAGCCGCCGGTCGCTGGAGTCCCGCCG
CTGCGGCCGCCCCGTGTCTTCCTCGTCCGCTTGTCCGCCGGTGGCCGCGCTGGTCGATTTCAAGTTGGCCTGAGGAAGAT
GACGACCAAAAAAAAGCCAGTTGTGGGTATATTTAGAGAATATTCTTTTTACGGGTTAATTATACGGGCTCTGTTCGGTC
GCAACTAAAATTGGCCCTTATAATGTGTTTTTCTTGGCCCGTAAAACACTTATACGGGTCGCAGTTTTAAGGGGTCTGCT
AGAGATGCTCTTAAAACCGTACTTAAACTGTAAAAACGTCTTATATCAAGGGGCAAAGTGAGCACAACAAAAATATTTAG
ATTGATGTACACACCGAAAACAGTCATGAGCATATTTTTCGTTTGAAAAACACAGTACAAATGCAAATGCTTGTACATAT
ACATACATACATTTATCATTTATGAATGCACGGAGGCACAA--CCTACCATCGAGAGATGGAGTCGGCATA----GATAT
TGAC-AAAGTCGTCACGTGTAATTCATAGTCGAAGGGTGTC-----TCATCCCATTAAAAAAGGATAATGATGTCAAAAA
TATTAAAATAAATC---TAGTAAAATGTGAGCACCTGTGCTAATC-TGGATTTAAATCTAGATGGACAGATTT-CACCAT
ACCCAACCTATCTTGCTGA-CGCTGAGCTATGCTCATTTATTCTGGTGCACGACAGTAGCACATGTGCACGCAGCGCGCT
ATAAGGGGCAGCGA-------------------------------GCATCGAAATCTTCTTCCTC----CCGTGCGAGCG
GTGCGGCGGAGCGATGCCGGCCGGTGAGCCCCTCCCCGGCCGTGGTGCCAGCAGCAGGCCTGCAGCGCCGGCCACAGCGT
ACTCTGGTCATCACCGCCTCTTCTTCTTTTTCTCGGTCCACCTCGGTCGTTCTGGCTCGCTTGACCAAGCAAAGATTTAT
CCATGGCTGACTTTTCTTATCCCACAGGCGTTGCCAAGAAGCTGCCACTGGCTCTGCTCGTGTTCTTCTCGGCACTGCTC
TACAACCAGATTCAGCCGCCGCCGCCAAAGGTCCCTGGCTCGCCGGGCGGGCCTCCGATCACGGCAAACCGGACAAAGCT
CAGGGACGGCAGGCACCTGGCCTACCTGGAATCCGGCGTCCCAAAGGATCAGGCCAAGTACAAGATCATTTTCGTCCATG
GCTTCTTCTGCTGCAGATACGACGTGCTCAACGTCTCCCAGGTACA--------GGGA-----TTTGGCATCGCTCTTTC
T------------ATGCATCATACGCAGACGAACCAGAGAGTTGACTGAATAGTCTTGAGCTGCACTCTGTTCT----CA
GGGGCTGCTACAGGAACTGGGCATCTACC--TGCTGTCCTTCGACCGGCCGGGGTACTGCGAGAGCGACGCGCACCCGGC
GCGGACGGAGGAGAGCATCGCCGTCGACATCGCCGAGCTGGCCGACAACCTGCAGCTGGGGCCCCGGTTCCACCTCATGG
GCTTCTCCATGGGCGGCGAGATCATGTGGAGCTGCCTCAAGCACATCCCGCACAGGTAAC--AAGTGCTGGAATCCCATC
TTCTCCCCCCCATTACAACCTGTGACGTCTTTCTTAACCATACTGCATCTTCCCATGCCATGGATGGAATCGGGCGGCG-
-------------CAGGCTCGCCGGCGTGGCCATTCTCGCGCCGGTAGGCAACTACTGGTGGTCCGGCCTGCCGCCGGAC
GTGTACCAGGAGGCGTGGTACGTGCAGTTCCCGCAAGACCGAGCCGCCGTCTGGGTCGCCCACCACCTCCCGTGGCTGGC
CAACTGGTGGAACACCCAGAGGCTGTTCCCAAGCTCCAGCGTCAAGGCCCGCAACCCCGCCATCTACTCCAGGGAAGACA
AGCCGCTCAGCGCCAAATTCGCCCAGCGAGCCCACAATGCAAGAGAGAAGAACA---CTTGAACTTGAATGAACTACTAG
TAGTAATTAAGCTCCTGATCTGACGCTTTGGTTTGTTTGCTTGTTCGGGTGATGTACAGAAGCAGGTCACGCAGCAAGGG
GAGCACGAGTCCCTGCACCGGGACATGATCGTCGGGTTCGGGAAGTGGGGATGGAGCCCGCTGCAGCCGGGCAACCCGTT
CGCCGGCGTTGGCGACGATGTGAAGGTGCACCTGTGGCACGGAGTCGAAGACCTGTTCGTGCCTGTTGCCCTGTCCCGGT
ACATCAGCAAGAGGCTCCCCTGGGTGATCTACCACGAGCTCCCGACGGCCGGCCACCTGTTCCCGGTCGCCGACGGGATG
CCCGACGTCATCGTCAAGTCGCTGCTGCTCGGAGACGGGTGATGATGGTTTGTTTCGAGCGAGAGCGAGAGATGGGCCAT
---TAGGATTTCGAATAAATTCACCACCTTAACACTTGAATTAGATTGAGCACTTGGCCCGGGGAGTAAAGGTAGACTAT
CCCTGTTTTAATACTATGCACTTCGAGATG---TACCCTCCAGTGCCAAGTTGCTGCGATATCATATCAATCAAATACTG
AAACGTGGTTTTGGCGTGTCCCCTGCAATAGAAAATTGCAGAGATGAGCGTGCCCTAGGTACCCCTGTCCGGGCTTACAG
GATCCCTCATTTTTTTTAGGTCAAAATTTGGCCATAAACTTAACAAATATAAAAAGTTTGTTCATATGTATCAATTTTTT
TGCTATA--AAA-ATAATTTATTATTTAAATTAAATTTG-----------------------ATTCAAAAGACAAAGGAG
CACTTGTAAAAATTGCTCAAATCTACTATCCACCTTTTTGTAAACCCTTGAGCATTTATGAACAACTATTTTATTCCACT
GGGAAAAGCTCAAGGGTCTTTTGCTCGTAGGGATCAGCC---TGGTGGCTGCTTGTCCTAGCAACGTTTTATTTTGGATA
AAGCTCTCTAAATTGACCACACACAAGAAAAGACTAGCCGATG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ATAAAGTTTCAAAGCACGGTACTATCCCCGTCCTTGTC
AATGTCACTTTTCAGGACTAGATATGCCTTCCAAGAATTGTATTGACACTTAAATCCAACAAACAAACGACATAAATGGA
TAAAGAAAACATCCTGCATTTCCTGCAAAACCCTTGAGCTTTTTCCAATGGAATAAAATAGTTGTTCAGTTTCAGACATG
TCCCCGAGTGTATCACTTGATTTTGGAATCAGAGCTGCACTTTTGAGGGCTCTCCCAATGCTCATTTCTTAGTACAGTCT
TAAAGCAAATACAATATGATGATGTAAGCATGCTATAAGGATTTGAATATAATATTATTGATTTTTTTGAACGAAAACAC
TAGAAGCATCCGACTTTAAATTAATAAAGCCACTAG
>chr1A_583
GTCAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------AGCATATTTTTAGTTTGAAAAACACAGTGCAAACATAAATGCTTGT--ATAT
ATGTATATACGCCTACCCTTTATGAATGCACAGAAACACGCGTCTTACCTTCTAGAGACGGAGCTGCCATATTTTGATAT
CTTTTGAAGTCGCCTCACGTAATTCGTAGTCGAAGGGTGTGGTGTGTCATACCATTGAAAT----TAACGATGTCGAAAA
GATTAAAACAAATCTAGTAGTAAAATGTAAGCACATGTGCTAATCTTGGATTTAAATCTAGATGGACAGATTTTCACCAC
ACCGAACCTATC------------GAGTTATGTTCATTTATTCTGGTGCACCACAGTAGCACATGTGCACGCAGCGCGCT
ACAAGGGGCAGCGAGCCAGCCAGCAACGCACGTTGCCGCCCGCGAGCATCGAAATCTCCTCCCTCCCGTCCGTGCGAGCG
GTGCGGCGGAACGATGCCGGCCAGTGAGCCCCTCCGCGGCCGTGGTGCCGGCAACAGGCCTGCAGCGCCGGCCACAGCGT
ACTCTGGTCCTCATCGCCTCTTCTTCTTCCTCTCGGTCCACCTCGGTCGTTCTGGCTCGCTTGACCAAGCAAAGATTTAT
CCATGGCTGACTTTTCTTATCCCACAGGCGCTGCCAAGAAGCTGCCACTGGCTCTGCTCGTGTTCTTCTCGGCCCTGCTG
TACAGCCAGATTCAGCCGCCGCCGCCAAAGGTCCCTGGCTCGCCGGGCGGGCCTCCGGTGACGGCAAACCGGACAAAGCT
GAGGGACGGCAGGCACCTGGCCTACCTGGAATCCGGCGTCCCGAAGGAGCAGGCCAAGTACAAGATCATTTTCGTCCATG
GCTTCTTCTGCTGCAGATACGACGTGCTCAACGTCTCCCAGGTACATGGAGTCAGGGA-----TTTGGAATCAATCTAGC
ACCATGTATGTACATGTATCGTACGCAGACGAACCAGAGCGTTGAATGGCCTGGA--TTGT---ACTCTGTTTT----CA
GGGGCTGCTACAAGAGCTGGGCATCTACC--TGCTGTCCTTCGACCGGCCGGGGTACTGCGAGAGCGACGCGCACCCGGC
GCGGACGGAGGAGAGCATCGCCGTCGACATCGTGGAGCTGGCCGACAACCTGCAGCTGGGGCCGAGGTTCCACCTCATGG
GCTTCTCCATGGGCGGCGAGATCATGTGGAGCTGCCTCAAGCACATCCCGCACAGGTAAC--AAGTGCTGGAACATCATC
TTCTTG-CCCCATTTCAACCCGTGGAGTCCTAACC----------------------------ATGGAATCGGGCGGCG-
-------------CAGGCTCGCCGGCGTGGCCATTCTCGCCCCGGTGGGCAACTACTGGTGGTCCGGCCTGCCGCCGGAC
GTGTACCAGGAGGCGTGGTACGTGCAGTTCCGGCAAGACCGAGCCGCCGTCTGGGTCGCCCACCACCTCCCGTGGCTGGC
CAACTGGTGGAACACCCAGCGGCTGTTCCCGAGCTCCAGCGTCAAGGCCCGGAACCCCGCCATCTACTCCAAGGAAGACA
AGCCGCTCACCGCCAAATTCGCCCAGCGAGCCCACAACGC-------AAGAACA---CTTGAACTTGAATGAACCAC-AG
TAGCAATTAAGCTCCTGATCTGACGCTTTGGTTTGCTTGCTTGTTGGGGTGATGCGCAGAAGCAGGTCACGCAGCAAGGA
GAGCACGAGTCGCTGCACCGGGACATGATCGTCGGGTTCGGGAAGTGGGGGTGGAGCCCGCTGCAGCCGGGCAACCCGTT
CGCCGGCGTCGGCGACGATGTGAAGGTGCACCTGTGGCACGGGGTCGAGGACCTGTTCGTGCCTGTAGCCCTGTCGCGGC
ACATCAGCAAGAGGCTCCCCTGGGTGATCTACCACGAGCTCCCGACGGCCGGCCACCTGTTCCCGGTCGCCGACGGGATG
CCCGACGTCATCGTCAAGTCGCTGCTGCTCGGAGACGGGTGATGACGGTTTGTTTCGAGCGAGAGCGAGAGATGGGCAGT
TAGTAGGATTTCGAATAAATTCACCATTTTAACACTTGAATTTGATTGAGCACTTGGCCCGGGGAGTAAAAGTAGACTAT
TCCTGTTT---TAATATGCACTTCGAGGTG---TAC--TCCGGTGACAAGCTGCTGCG-----ATATCAATCAAATACTG
AAACGTGGTTTCGGCGTGTCCCCTGCAATAAAAAATTGTAGAGATTAGCGTGCCCTAGGTACCCCTGTGCGGGCTGACAG
GATCCCTCA-TTTTTTTAGGTCAAAATTTGGTCATAAACTTAACAAATATAAAAAGTTTGTTCATATGTATCAATTTTTT
TCCTATA--AAATATAATTGATTATTTAAATTAAATTTGTTATAAATTAATAATTAAATTTGATTCAAAATACAA-GGAG
CACTTGTAAAAATTGTTCAAATCTACCATCCACCTT-TTTGTGTTCTCGGCTGCTTTATATACATCTAAGAAG-------
-------------GGGTC-TTTGCT-GTAGGGACTAGCC---TGTTGGCTGCTTGTTCTAGCAATGTTTTATTTTGGATA
AAACTCTCTAAATTAACCACACACAT-AAAAGACTAGCCGATG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CTAAAGTTTCAAAGCACGGTACTATCCCCGTCCTTGTC
CATGTCACTTTTCAGGACTAGATATGCCTTCCAAGAATTGTATTGACACTTAAATCCAACAAAC----GACATAAATGGA
TAAAGAAGCCATCCTGCATTTCTTGCAAAACCCTTAAG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr1B_685
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ACCTTCAAGAGATGTAGTCGGCATATTTTGATAT
TAAC-GACGTCGTCACGTGTAATTCATAGTCAAAGGGTGTC-----TCATGCCATTAAAAAAGGATAATGACATCGAAAA
GATTAAAATAAATC---TAGTAAAATGTGAGCACCTGTGGTAATC-TGGTTTTAAATCTAGATGGACAGTTTT-CAGCAC
ACCCAACCTATCTTGCTGAACGCTGAGGCATGCTCATTTATTCTGGTGCACGACAGAAGCACATGTACACGCAGCGCGCT
ATAAGGGGCAGCGAGCCAGCCAGCAAGGCACGTTG----CCGCGAGCATCGAAATCTTCTTCCTC----CCGTGCGAGCG
GTGCGGCGGAGCGATGCCGGCCGGTGAGCCCCTCCGCGGCCGTGGTGCCGGCAACAGGCCTGCAGCGCCGGCCACAGCGT
ATTCTGGTCATCATCCCCGCTTCTTCTCCCTCTCGGTTCACCTCCGTCGTTCTGGCTCGCTTGACTAAGCAAAGATTTAT
CCATGGCTGACTTTTCTTATCCCACAGGCGTTGCCAAGAAGCTGCCACTGACTCTGCTCGTGTTCTTCTCCGCCCTGCTC
TACAACCAGATTCAGCCGCCGCCGCCAAAGGTCCCTGGCTCGCCGGGCGGGCCTCCGGTGACGGCAAACCGGACAAAGCT
GAGGGACGGCAGGCACCTGGCCTACCTGGAATCCGGCGTCCCAAAGGAGCAGGCCAAGTACAAGATCATTTTTGTCCATG
GCTTCTTCTGCTGCAGATACGACGTGCTCAACGTCTCCCAGGTACATGGAGTCAGGGA-----TTTGGAATCAATCTATG
T------------ATGAATCAAGCGCAACGAACA---AGAGTTGAATGATCGAGGAGTTGT---ACTCTGTTTT----CA
GGGGCTGCTCCAAGAACTGGGCATCTACCTGTGCTGTCCTTCGACCGGCCGGGGTACTGCGAGAGCGACGCGCACCCGGC
GCGGACGGAGGAGAGCATCGCCGTCGACATCGCGGAGCTGGCCGACAACCTGCAGCTGGAGCCCAAGTTCCACCTCATGG
GCTTCTCCATGGGCGGCGAGATCATGTGGAGCTGCCTCAAGCACATCCCGCACAGGTAATATAAGCGGTGGAATCTCATC
TTCTT--CCCCATTGCAACCTGTGACGTCTTAACC----------------------------ATGGAATCGGCCGGCG-
-------------CAGGCTCGCCGGCGTGGCCATTCTCGCGCCGGTAGGCAACTACTGGTGGTCCGGCCTGCCGCCGGAC
GTGTACCAGGAGGCGTGGTACGTGCAGTTCCCGCAGGACCGAGCCGCCGTCTGGGTCGCCCACCACCTCCCGTGGCTGGC
CAACTGGTGGAACACCCAGAGACTGTTCCCAAGCTCCAGCGTCAAGGCCCGGAACCCCGCCATATACTCCAAGGAAGACA
AGCCGCTCACCGCCAAGTTCGCCCAGCGAGCCCACAATGC-------AAGAAGAACGCTTGAACTTGAATGAACTAC-AG
TAGCAATTAAGCTCCTGATCTGACGCTTTGGTTTTCTTGCTTCTTCGGGTGATGTGCAGAAGCAGGTCACGCAGCAAGGG
GAGCACGAGTCCCTGCACCGGGACATGATCGTCGGGTTCGGGAAGTGGGGATGGAGCCCGCTGCAGCCGGGCAACGCGTT
CGCCGGCGTCGGCGACGATGTGAAGGTGCACCTGTGGCACGGAGTCGAGGACCTGTTCGTGCCTGTTGCCCTGTCGCGGT
ACATCAGCAAGAGGCTCCCCTGGGTGATCTACCACGAGCTCCCGACGGCCGGCCACCTGTTCCCGGTCGCCGACGGGATG
CCCGATGTCATTGTCAAATCGCTGCTGCTCGGAGACGGGTGATGATGGTTTCTTTCGAGCTAGAGCGAGAGATGAGGCAT
---TGGGATTTCGAATAAATTCACCACCTTAACACTTGAATTAGATTGAGCACTTGGCCCGGGGAGGAAAAGTAGACTAT
ACCCGTTT---TAATATGCACTTCGAGGTGGTGTAC--TCCAGTGCCAAGTTGCTGCG-----ATATCAATCAAATACTG
AAACGTGGTTTTGGCGTGTCCTCCGCAATCAAAT-----------------------------CCTATCCGGGCTTCCAG
GATACCTCA-TTTTTTTAGGTCAAAATTTGGTCATAGACTTAACAAGTATAAAAAGTTTGTTCATATGTATCATTTCTTT
TTGCTATAGAAT-ATAATTTATCATTTGAATTT------TTTTAAATAAATAATTAAATTTGATCCAAAAGACAA-GGAG
CACTTGTAAAAATTGCTCAAATCTACTATCCACCTTATTTGTGTTCTCGGGTGCTTTGTATACATCTAAGAAT-------
-------------GGGTCTTTTGCC-GTAGAGACCAGCCTGTTGTTGGCTGCTTGTCCTAGCAATGTTTTATTTTGGATA
AAGCTCTCTAAATTGACCACACACAAGAAAAGACTAGCCGATACTCCCTCCATTCCAAAATATAGTGCGCCCGCGCTTTC
CGAGGTCCAACTTTGACCATAAATTTAACCAACGAGACCAACTGCGGCAGGAGAAAAAATTATATAATTAAAAAATTCTT
TCGAATACGAATTCACTGATGTAATTTTTGCTCCCACCGTAATCGGTCTTGGTAGTTAAATTTGCGGTCAAAGTTGAAGC
ACGGGGATAGAGGAAGCACTACATTGTGGAATGAAGGGAGTACTAAAGTTTGAAAGCACGGTACTATGCCCGTCCTTGTC
CATGTCACTTTTCAGGACTAGATATGCCTTCCAAGAATTGTATTGACACTTAAATCCAACAAAC----GACATAAATGGA
TAAAGAAACCATCCTGCATTTCCTGCAAAACCCTTGAGCTTTTTCCAATGAAATAAAATAGTTGTTCAGTTTCACACATG
TCCATGAATGTGCCACTTGATTTTGG-ATCAGAGCTGCACTTTTGAGGGCTCTCCCGATGCTGATTTCTTAGCACAGTTT
TAGAGCAAATACAATAAGGTGATAAGCAAATTATAAGGA-----------------------------------------
------------------------------------
>chr2D_1198
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCTCTGTTTGTGTTCCTGGCGGCGCTGCTG
TACAAGCAGCTTCAGCCTCCGGCTCCGAGAATCGTTGGCTCGCCGGGTGGCCCCCCTGTTACAGCATCAAGAACAAAACT
CAAAGACGGCAGGCATTTGGCATACCTGGAATCTGGCGTCCCAAAGGAGAAGGCCAAGTACAAGATCATTTTCGTCCATG
GATTCGACTCCTGCAGATACGACGCGCTTCAAGTCTCCCCGGTACATATTGTTGATTATTATCTTAAGAATCATTTTAAG
G------------ATAGAACAATCTACTTCAAGCTGACACTGAGTGATTGTCTCGTCATGGACGGATGAAATCTGGTGCA
GGAGCTGGCACAAGAGCTGGGCATCTACC--TGCTGTCCTTCGACCGGCCTGGGTACGGTGAGAGCGACCCTGACCCGGC
GCCGTCTGAGAAGAGCATCGCCCTCGACATCGAGGAGCTCGCCGACAACCTGCAGCTGGGCCCCAAATTCCACCTCATCG
GCTTCTCCATGGGCGGCGAAATCATGTGGAGCTGCCTCAAGCACATCCCGCACAGGTAACACGGCATCCAGTACTTATCA
AGCTGATCACCGTGCATCTTTCTTC----------------ACTGCAACATCAAATGCCTCAAGTCTGAATGTGTTGTTC
CACCGTGGTGCAACAGGCTCTCCGGGGTGGCCGTTCTCGGGCCGGTGGGCAACTACTGGTGGTCCGGCTTGCCGTCGAAC
GTGTCATGGGACGCCTGGTACCAGCAGCTCCCACGGGATCAATGGGCGGTCTGGGTCTCCCATCATCTGCCATGGCTGAC
CTACTGGTGGAACACCCAGAAGCTCTTCCCGGCCTCCAGCGTCATCGCCTACAACCC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S----------------S----SSS----------SS----
-SS--S----SSS--S-S-------------S--SS---SS---S----S--S---------------------------
-S---S--------------------------------------------S------------------------S----
S------------------------------------------------------------------------------S
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S-------------S---S--------------------------
-------------S--------------SS--------------------------------------------------
-------------------------------------------------------------------------S------
---------------------------------------------------------S-S--------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------S---SS---S--
----------------S----------------------------S---S-S-SS-SSS-SSSS----------------
------------S-------------------------------------------------------------------
---------------------------------S------------------------------S---------------
---------------------------------------------------------------------------S----
----SSS-------S----------------SSSSSSSSSS------S-S--SS-----SSSS-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------S------------------------------SSSSSSS------------------------------S--
---S-------------------------------S-------------------S------------------------
--------------------------------------------------------------------------------
---------S--------------------------------------S--------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
S-------SSS--S-------------S--------SS--------------------SSSSS-----------------
------------------------------S-------S------S----------------------------------
---------S---------------------S------------------------------------------------
-S-------------------------------------------------------------------------S----
------------------------------------S--SSSSSS-SSS-SSSS-----SS---S---SSSSSSSSSSSS
SSSSSSSSSSSSS------------S-------S----------S-------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
S---------------------------------------------------------------SSSS------------
--------S-----------------------------------------S-----------------------S-----
---SS--S---SS-------------S-----------------------------S-----S---------S-----S-
--S-------------S-S----SSSSSS--SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_140
--------------------------------------------------------------------------------
----------------------------------------GTCTCTCGAACGGAGCTAGC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_1581
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CTGCACTCTGTTCTCAGGGG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_174
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ATCGAT
TCGCACGGAGCTAG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_1613
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GGAACTGGGCATCTACCTGC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_544
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATCAAGGGGCAAAGTGAGCA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_2449
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AGACCTGTTCGTGCCTGTTG------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_1613
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GTTCTCA
GGGGCTGCTACAG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_2839
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CAGAGATGAGCGTGCCCTAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
