Multiple sequence alignment - TraesCS1D01G260800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G260800 chr1D 100.000 2761 0 0 1 2761 355147570 355144810 0.000000e+00 5099.0
1 TraesCS1D01G260800 chr1D 96.190 105 3 1 2657 2761 141723515 141723618 1.310000e-38 171.0
2 TraesCS1D01G260800 chr1D 93.750 48 2 1 346 392 358223288 358223335 1.370000e-08 71.3
3 TraesCS1D01G260800 chr1A 91.494 1258 59 20 450 1678 454742670 454741432 0.000000e+00 1687.0
4 TraesCS1D01G260800 chr1A 86.492 918 85 13 1769 2663 454741400 454740499 0.000000e+00 972.0
5 TraesCS1D01G260800 chr1A 87.661 389 27 11 1 373 454743178 454742795 1.520000e-117 433.0
6 TraesCS1D01G260800 chr1A 80.159 126 14 6 346 461 587674327 587674451 1.760000e-12 84.2
7 TraesCS1D01G260800 chr1B 91.263 1156 70 14 456 1594 477129396 477128255 0.000000e+00 1546.0
8 TraesCS1D01G260800 chr1B 85.769 520 62 7 1794 2309 477128157 477127646 8.700000e-150 540.0
9 TraesCS1D01G260800 chr1B 90.411 365 18 5 1 353 477129758 477129399 5.390000e-127 464.0
10 TraesCS1D01G260800 chr1B 83.404 470 64 5 2200 2663 477127641 477127180 9.140000e-115 424.0
11 TraesCS1D01G260800 chr1B 80.769 130 13 7 343 461 430155524 430155396 1.050000e-14 91.6
12 TraesCS1D01G260800 chr3B 84.818 606 69 16 1843 2436 360087863 360087269 3.060000e-164 588.0
13 TraesCS1D01G260800 chr3B 81.287 171 25 3 1856 2022 564747762 564747929 6.200000e-27 132.0
14 TraesCS1D01G260800 chr3B 82.143 112 18 2 347 457 371351476 371351366 8.140000e-16 95.3
15 TraesCS1D01G260800 chr3B 82.143 112 9 5 347 448 611692374 611692484 4.900000e-13 86.1
16 TraesCS1D01G260800 chr3A 83.630 617 75 18 1833 2436 357114883 357115486 8.640000e-155 556.0
17 TraesCS1D01G260800 chr3A 82.423 586 79 14 1861 2437 659516876 659516306 8.890000e-135 490.0
18 TraesCS1D01G260800 chr2D 81.947 637 81 21 1809 2435 406939872 406939260 2.450000e-140 508.0
19 TraesCS1D01G260800 chr2D 86.945 383 38 3 2058 2434 416931600 416931224 1.180000e-113 420.0
20 TraesCS1D01G260800 chr7B 83.579 475 64 7 1833 2305 540867856 540868318 1.520000e-117 433.0
21 TraesCS1D01G260800 chr4D 81.629 528 80 10 1909 2435 321949392 321949903 3.290000e-114 422.0
22 TraesCS1D01G260800 chr4D 84.513 226 32 2 2435 2660 470499406 470499628 1.290000e-53 220.0
23 TraesCS1D01G260800 chr4D 84.052 232 31 5 2429 2660 458088841 458089066 4.630000e-53 219.0
24 TraesCS1D01G260800 chr4D 98.980 98 1 0 2664 2761 118009517 118009614 2.830000e-40 176.0
25 TraesCS1D01G260800 chr4D 98.980 98 1 0 2664 2761 187991234 187991137 2.830000e-40 176.0
26 TraesCS1D01G260800 chr4D 97.115 104 3 0 2657 2760 363803194 363803297 2.830000e-40 176.0
27 TraesCS1D01G260800 chr4D 95.000 40 2 0 1666 1705 41930864 41930825 2.300000e-06 63.9
28 TraesCS1D01G260800 chr3D 88.496 226 26 0 2435 2660 140433712 140433937 9.740000e-70 274.0
29 TraesCS1D01G260800 chr3D 93.805 113 6 1 2650 2761 394885175 394885287 4.730000e-38 169.0
30 TraesCS1D01G260800 chr3D 81.102 127 10 8 343 458 13983785 13983908 3.790000e-14 89.8
31 TraesCS1D01G260800 chr5A 87.156 218 24 4 2443 2660 408179670 408179883 7.640000e-61 244.0
32 TraesCS1D01G260800 chr4A 86.697 218 25 4 2443 2660 593824468 593824681 3.550000e-59 239.0
33 TraesCS1D01G260800 chr5B 85.345 232 29 4 2429 2660 275674712 275674938 4.600000e-58 235.0
34 TraesCS1D01G260800 chr5B 84.821 112 14 3 350 460 42705583 42705474 2.910000e-20 110.0
35 TraesCS1D01G260800 chr7A 84.810 237 28 7 2429 2663 202530378 202530148 5.950000e-57 231.0
36 TraesCS1D01G260800 chr6D 98.980 98 1 0 2664 2761 59303482 59303385 2.830000e-40 176.0
37 TraesCS1D01G260800 chr6D 97.087 103 3 0 2659 2761 435418911 435419013 1.020000e-39 174.0
38 TraesCS1D01G260800 chr5D 98.980 98 1 0 2664 2761 19234246 19234149 2.830000e-40 176.0
39 TraesCS1D01G260800 chr5D 97.959 98 2 0 2664 2761 135630715 135630618 1.310000e-38 171.0
40 TraesCS1D01G260800 chr7D 80.328 122 13 6 345 457 33478573 33478454 6.340000e-12 82.4
41 TraesCS1D01G260800 chr7D 79.528 127 14 5 342 458 443163219 443163343 2.280000e-11 80.5
42 TraesCS1D01G260800 chr6B 80.000 120 14 9 350 460 365672 365554 2.280000e-11 80.5
43 TraesCS1D01G260800 chr4B 97.674 43 1 0 350 392 360898203 360898161 1.060000e-09 75.0
44 TraesCS1D01G260800 chr4B 97.436 39 1 0 1667 1705 653920018 653920056 1.770000e-07 67.6
45 TraesCS1D01G260800 chrUn 81.720 93 10 5 370 456 126928255 126928164 1.370000e-08 71.3
46 TraesCS1D01G260800 chr2A 92.000 50 3 1 389 438 76516926 76516878 4.930000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G260800 chr1D 355144810 355147570 2760 True 5099.000000 5099 100.00000 1 2761 1 chr1D.!!$R1 2760
1 TraesCS1D01G260800 chr1A 454740499 454743178 2679 True 1030.666667 1687 88.54900 1 2663 3 chr1A.!!$R1 2662
2 TraesCS1D01G260800 chr1B 477127180 477129758 2578 True 743.500000 1546 87.71175 1 2663 4 chr1B.!!$R2 2662
3 TraesCS1D01G260800 chr3B 360087269 360087863 594 True 588.000000 588 84.81800 1843 2436 1 chr3B.!!$R1 593
4 TraesCS1D01G260800 chr3A 357114883 357115486 603 False 556.000000 556 83.63000 1833 2436 1 chr3A.!!$F1 603
5 TraesCS1D01G260800 chr3A 659516306 659516876 570 True 490.000000 490 82.42300 1861 2437 1 chr3A.!!$R1 576
6 TraesCS1D01G260800 chr2D 406939260 406939872 612 True 508.000000 508 81.94700 1809 2435 1 chr2D.!!$R1 626
7 TraesCS1D01G260800 chr4D 321949392 321949903 511 False 422.000000 422 81.62900 1909 2435 1 chr4D.!!$F2 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 794 0.03601 AAAGGATGACCAGCTGACCG 60.036 55.0 17.39 0.15 38.94 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2667 2910 0.042881 ACCCCTTAGTCCAGGACTCC 59.957 60.0 26.42 0.0 42.4 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 132 2.169974 CGCTGATACGCTGATACGATC 58.830 52.381 0.00 0.00 36.70 3.69
191 201 1.011333 GCATGCACAAAATCCATGGC 58.989 50.000 14.21 0.00 37.43 4.40
208 222 2.398588 TGGCTTCCGGTCTGATTATCT 58.601 47.619 0.00 0.00 0.00 1.98
212 226 5.071788 TGGCTTCCGGTCTGATTATCTTTAT 59.928 40.000 0.00 0.00 0.00 1.40
305 323 0.389948 GAGATCTTGCAACGACCGGT 60.390 55.000 6.92 6.92 0.00 5.28
333 351 2.109181 GCCAGTACATCGAGGCCC 59.891 66.667 0.00 0.00 41.25 5.80
358 379 4.359996 ACCGGAAACTAATTACTCCCTCT 58.640 43.478 9.46 0.00 0.00 3.69
363 384 5.811100 GGAAACTAATTACTCCCTCTGTTCG 59.189 44.000 0.00 0.00 0.00 3.95
364 385 6.350780 GGAAACTAATTACTCCCTCTGTTCGA 60.351 42.308 0.00 0.00 0.00 3.71
370 391 7.845066 AATTACTCCCTCTGTTCGAAAATAC 57.155 36.000 0.00 0.00 0.00 1.89
373 394 5.238583 ACTCCCTCTGTTCGAAAATACTTG 58.761 41.667 0.00 0.00 0.00 3.16
374 395 5.221661 ACTCCCTCTGTTCGAAAATACTTGT 60.222 40.000 0.00 0.00 0.00 3.16
375 396 5.235516 TCCCTCTGTTCGAAAATACTTGTC 58.764 41.667 0.00 0.00 0.00 3.18
376 397 4.091509 CCCTCTGTTCGAAAATACTTGTCG 59.908 45.833 0.00 0.00 36.12 4.35
377 398 4.091509 CCTCTGTTCGAAAATACTTGTCGG 59.908 45.833 0.00 0.00 35.51 4.79
378 399 4.873817 TCTGTTCGAAAATACTTGTCGGA 58.126 39.130 0.00 0.00 35.51 4.55
379 400 4.921515 TCTGTTCGAAAATACTTGTCGGAG 59.078 41.667 0.00 0.00 35.51 4.63
380 401 4.873817 TGTTCGAAAATACTTGTCGGAGA 58.126 39.130 0.00 0.00 35.51 3.71
381 402 5.291178 TGTTCGAAAATACTTGTCGGAGAA 58.709 37.500 0.00 0.00 39.69 2.87
383 404 6.425721 TGTTCGAAAATACTTGTCGGAGAAAT 59.574 34.615 0.00 0.00 39.69 2.17
384 405 6.403333 TCGAAAATACTTGTCGGAGAAATG 57.597 37.500 0.05 0.00 39.69 2.32
388 409 6.683974 AAATACTTGTCGGAGAAATGGATG 57.316 37.500 0.00 0.00 39.69 3.51
390 411 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
391 412 5.359194 ACTTGTCGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 39.69 2.29
394 450 7.509546 ACTTGTCGGAGAAATGGATGTATTAT 58.490 34.615 0.00 0.00 39.69 1.28
396 452 9.489084 CTTGTCGGAGAAATGGATGTATTATAA 57.511 33.333 0.00 0.00 39.69 0.98
444 511 9.672086 TTCATTTTCTACGACAAGTAATTTTGG 57.328 29.630 0.00 0.00 34.45 3.28
448 515 5.771469 TCTACGACAAGTAATTTTGGACGA 58.229 37.500 14.08 3.45 36.55 4.20
454 521 6.073980 CGACAAGTAATTTTGGACGAAGAGAA 60.074 38.462 0.00 0.00 35.59 2.87
497 567 5.808366 TCCTTACTGAAGACTGTCAACAT 57.192 39.130 10.88 3.46 34.25 2.71
519 589 5.654901 TGGCATAATTACACCCCATTAGA 57.345 39.130 3.71 0.00 0.00 2.10
544 627 1.153229 GCACCCCACCCGATAAGTC 60.153 63.158 0.00 0.00 0.00 3.01
545 628 1.623542 GCACCCCACCCGATAAGTCT 61.624 60.000 0.00 0.00 0.00 3.24
546 629 0.464452 CACCCCACCCGATAAGTCTC 59.536 60.000 0.00 0.00 0.00 3.36
624 709 4.765339 AGGAACCTGCATAACCTTAACAAC 59.235 41.667 0.00 0.00 0.00 3.32
628 713 5.871834 ACCTGCATAACCTTAACAACACTA 58.128 37.500 0.00 0.00 0.00 2.74
674 759 2.046023 CTGCTTGCATCACCGGGA 60.046 61.111 6.32 0.00 0.00 5.14
709 794 0.036010 AAAGGATGACCAGCTGACCG 60.036 55.000 17.39 0.15 38.94 4.79
936 1022 3.173599 CAATCCATTGCAACAAGTAGCG 58.826 45.455 0.00 0.00 0.00 4.26
1037 1123 0.324614 TGCTCTCCGCTTGGAATTGA 59.675 50.000 0.00 0.00 42.58 2.57
1431 1517 9.012448 GGAGAAATCATTTTGCTTTTTGTTTTG 57.988 29.630 0.00 0.00 0.00 2.44
1475 1569 5.232414 GCTAACACGATCCATGTAGAGAAAC 59.768 44.000 0.00 0.00 0.00 2.78
1494 1588 9.118300 AGAGAAACCAGAGCATTATTTAATCAG 57.882 33.333 0.00 0.00 0.00 2.90
1512 1606 0.878961 AGGTGCGACCGTCAAAGAAC 60.879 55.000 0.00 0.00 44.90 3.01
1594 1689 3.589988 AGTGCTGAGTTAGGTCATTTCG 58.410 45.455 0.00 0.00 0.00 3.46
1614 1714 2.554032 CGACAGCCACAAATTTCCTTCT 59.446 45.455 0.00 0.00 0.00 2.85
1623 1723 5.510179 CCACAAATTTCCTTCTGCATCTGTT 60.510 40.000 0.00 0.00 0.00 3.16
1626 1726 5.382618 AATTTCCTTCTGCATCTGTTCAC 57.617 39.130 0.00 0.00 0.00 3.18
1628 1728 0.445436 CCTTCTGCATCTGTTCACGC 59.555 55.000 0.00 0.00 0.00 5.34
1637 1737 0.599060 TCTGTTCACGCATACGGACA 59.401 50.000 0.00 0.00 46.04 4.02
1639 1739 2.424246 TCTGTTCACGCATACGGACATA 59.576 45.455 0.00 0.00 46.04 2.29
1640 1740 3.119424 TCTGTTCACGCATACGGACATAA 60.119 43.478 0.00 0.00 46.04 1.90
1645 1745 3.568430 TCACGCATACGGACATAAGAGAT 59.432 43.478 0.00 0.00 46.04 2.75
1647 1747 3.164358 CGCATACGGACATAAGAGATCG 58.836 50.000 0.00 0.00 34.97 3.69
1650 1750 4.395656 CATACGGACATAAGAGATCGTCG 58.604 47.826 0.00 0.00 32.94 5.12
1665 1765 3.214697 TCGTCGTCCAACGCTATTTTA 57.785 42.857 0.00 0.00 42.21 1.52
1670 1770 5.108480 CGTCGTCCAACGCTATTTTATACTC 60.108 44.000 0.00 0.00 42.21 2.59
1675 1775 6.641723 GTCCAACGCTATTTTATACTCTCTCC 59.358 42.308 0.00 0.00 0.00 3.71
1678 1778 6.388435 ACGCTATTTTATACTCTCTCCGTT 57.612 37.500 0.00 0.00 0.00 4.44
1679 1779 6.437094 ACGCTATTTTATACTCTCTCCGTTC 58.563 40.000 0.00 0.00 0.00 3.95
1681 1781 6.514541 CGCTATTTTATACTCTCTCCGTTCCA 60.515 42.308 0.00 0.00 0.00 3.53
1682 1782 7.379750 GCTATTTTATACTCTCTCCGTTCCAT 58.620 38.462 0.00 0.00 0.00 3.41
1683 1783 8.521176 GCTATTTTATACTCTCTCCGTTCCATA 58.479 37.037 0.00 0.00 0.00 2.74
1693 1793 8.925338 ACTCTCTCCGTTCCATAATATAAAAGT 58.075 33.333 0.00 0.00 0.00 2.66
1713 1813 7.481275 AAAGTATTTTTGACACAGCATTTGG 57.519 32.000 0.00 0.00 31.62 3.28
1715 1815 7.850789 AAAGTATTTTTGACACAGCATTTGGGT 60.851 33.333 0.00 0.00 40.67 4.51
1783 1883 6.500684 AAACGCTCTTATATTATGGCATGG 57.499 37.500 10.98 0.00 0.00 3.66
1784 1884 4.517285 ACGCTCTTATATTATGGCATGGG 58.483 43.478 10.98 0.70 0.00 4.00
1785 1885 4.225042 ACGCTCTTATATTATGGCATGGGA 59.775 41.667 10.98 0.00 0.00 4.37
1786 1886 4.813161 CGCTCTTATATTATGGCATGGGAG 59.187 45.833 10.98 7.75 0.00 4.30
1787 1887 5.128919 GCTCTTATATTATGGCATGGGAGG 58.871 45.833 10.98 0.00 0.00 4.30
1841 1941 2.159421 CGTACTTCTATCCACACAGCGT 60.159 50.000 0.00 0.00 0.00 5.07
1979 2100 1.379977 CCCAGTCGTCTGCTCCCTA 60.380 63.158 3.97 0.00 40.09 3.53
2106 2227 5.738619 TCTTTCTACCACTGCAACATCTA 57.261 39.130 0.00 0.00 0.00 1.98
2120 2241 3.577649 ACATCTAATAGCGGACGGATG 57.422 47.619 9.31 9.31 37.26 3.51
2129 2250 1.962822 CGGACGGATGGCATGATGG 60.963 63.158 3.81 0.00 0.00 3.51
2215 2336 3.074412 GGCGATCTTCACCTTCTTTTCA 58.926 45.455 0.00 0.00 0.00 2.69
2222 2343 5.132502 TCTTCACCTTCTTTTCATTGAGCA 58.867 37.500 0.00 0.00 0.00 4.26
2456 2699 0.979187 GTCCGTCCTCATAACCCCCA 60.979 60.000 0.00 0.00 0.00 4.96
2521 2764 2.256158 CGGGTCGTTGTACGCTGA 59.744 61.111 0.00 0.00 42.21 4.26
2545 2788 2.541120 CCGCTCTAGGCATTGCAGC 61.541 63.158 11.39 9.61 41.91 5.25
2562 2805 3.943034 CGAACAACGTGCGGGCAA 61.943 61.111 0.00 0.00 37.22 4.52
2619 2862 0.249489 CTGCGGGGAAGAATACTCGG 60.249 60.000 0.00 0.00 0.00 4.63
2631 2874 1.787057 ATACTCGGAGAAGAGCGGCG 61.787 60.000 12.86 0.51 41.77 6.46
2644 2887 3.256105 CGGCGCCGCGTTAACATA 61.256 61.111 38.48 0.00 0.00 2.29
2664 2907 6.296365 CATAGATGATGTAAGGCACTGTTG 57.704 41.667 0.00 0.00 40.86 3.33
2665 2908 4.558226 AGATGATGTAAGGCACTGTTGA 57.442 40.909 0.00 0.00 40.86 3.18
2666 2909 4.511527 AGATGATGTAAGGCACTGTTGAG 58.488 43.478 0.00 0.00 40.86 3.02
2667 2910 3.057969 TGATGTAAGGCACTGTTGAGG 57.942 47.619 0.00 0.00 40.86 3.86
2668 2911 2.290260 TGATGTAAGGCACTGTTGAGGG 60.290 50.000 0.00 0.00 40.86 4.30
2669 2912 1.429930 TGTAAGGCACTGTTGAGGGA 58.570 50.000 0.00 0.00 40.86 4.20
2670 2913 1.347707 TGTAAGGCACTGTTGAGGGAG 59.652 52.381 0.00 0.00 40.86 4.30
2671 2914 1.348036 GTAAGGCACTGTTGAGGGAGT 59.652 52.381 0.00 0.00 40.86 3.85
2672 2915 0.398318 AAGGCACTGTTGAGGGAGTC 59.602 55.000 0.00 0.00 40.86 3.36
2673 2916 1.003233 GGCACTGTTGAGGGAGTCC 60.003 63.158 0.00 0.00 0.00 3.85
2674 2917 3.873444 AGGCACTGTTGAGGGAGTCCT 62.873 57.143 9.58 0.00 42.56 3.85
2675 2918 0.321122 GCACTGTTGAGGGAGTCCTG 60.321 60.000 9.58 0.00 45.05 3.86
2676 2919 0.322975 CACTGTTGAGGGAGTCCTGG 59.677 60.000 9.58 0.00 45.05 4.45
2677 2920 0.191064 ACTGTTGAGGGAGTCCTGGA 59.809 55.000 9.58 0.00 45.05 3.86
2678 2921 0.610687 CTGTTGAGGGAGTCCTGGAC 59.389 60.000 19.20 19.20 45.05 4.02
2679 2922 0.191064 TGTTGAGGGAGTCCTGGACT 59.809 55.000 28.70 28.70 46.42 3.85
2680 2923 1.431633 TGTTGAGGGAGTCCTGGACTA 59.568 52.381 28.41 10.70 43.53 2.59
2681 2924 2.158219 TGTTGAGGGAGTCCTGGACTAA 60.158 50.000 28.41 16.09 43.53 2.24
2682 2925 2.498078 GTTGAGGGAGTCCTGGACTAAG 59.502 54.545 28.41 0.00 43.53 2.18
2683 2926 1.007238 TGAGGGAGTCCTGGACTAAGG 59.993 57.143 28.41 0.00 43.53 2.69
2684 2927 0.340208 AGGGAGTCCTGGACTAAGGG 59.660 60.000 28.41 0.00 43.53 3.95
2685 2928 0.691413 GGGAGTCCTGGACTAAGGGG 60.691 65.000 28.41 0.00 43.53 4.79
2686 2929 0.042881 GGAGTCCTGGACTAAGGGGT 59.957 60.000 28.41 5.74 43.53 4.95
2687 2930 1.487300 GAGTCCTGGACTAAGGGGTC 58.513 60.000 28.41 11.40 43.53 4.46
2693 2936 3.951765 GACTAAGGGGTCCTCGGG 58.048 66.667 0.00 0.00 30.89 5.14
2694 2937 2.365237 ACTAAGGGGTCCTCGGGC 60.365 66.667 0.00 0.00 30.89 6.13
2695 2938 3.537874 CTAAGGGGTCCTCGGGCG 61.538 72.222 0.00 0.00 30.89 6.13
2696 2939 4.387343 TAAGGGGTCCTCGGGCGT 62.387 66.667 0.00 0.00 30.89 5.68
2697 2940 3.910784 TAAGGGGTCCTCGGGCGTT 62.911 63.158 0.00 0.00 30.89 4.84
2710 2953 3.406559 GCGTTCGGCCTGTTATCC 58.593 61.111 0.00 0.00 34.80 2.59
2711 2954 1.448893 GCGTTCGGCCTGTTATCCA 60.449 57.895 0.00 0.00 34.80 3.41
2712 2955 0.814010 GCGTTCGGCCTGTTATCCAT 60.814 55.000 0.00 0.00 34.80 3.41
2713 2956 0.937304 CGTTCGGCCTGTTATCCATG 59.063 55.000 0.00 0.00 0.00 3.66
2714 2957 1.308998 GTTCGGCCTGTTATCCATGG 58.691 55.000 4.97 4.97 0.00 3.66
2715 2958 0.182537 TTCGGCCTGTTATCCATGGG 59.817 55.000 13.02 0.00 0.00 4.00
2716 2959 1.898574 CGGCCTGTTATCCATGGGC 60.899 63.158 13.02 5.03 41.80 5.36
2717 2960 4.181051 GCCTGTTATCCATGGGCC 57.819 61.111 13.02 0.00 37.12 5.80
2718 2961 1.898574 GCCTGTTATCCATGGGCCG 60.899 63.158 13.02 0.00 37.12 6.13
2719 2962 1.228245 CCTGTTATCCATGGGCCGG 60.228 63.158 13.02 0.00 0.00 6.13
2720 2963 1.705002 CCTGTTATCCATGGGCCGGA 61.705 60.000 13.02 2.40 36.84 5.14
2721 2964 0.401738 CTGTTATCCATGGGCCGGAT 59.598 55.000 13.02 16.02 45.41 4.18
2722 2965 0.850100 TGTTATCCATGGGCCGGATT 59.150 50.000 16.82 3.67 40.49 3.01
2723 2966 1.247567 GTTATCCATGGGCCGGATTG 58.752 55.000 16.82 3.74 40.49 2.67
2724 2967 1.144691 TTATCCATGGGCCGGATTGA 58.855 50.000 16.82 3.14 40.49 2.57
2725 2968 1.371467 TATCCATGGGCCGGATTGAT 58.629 50.000 16.82 9.81 40.49 2.57
2726 2969 0.251474 ATCCATGGGCCGGATTGATG 60.251 55.000 13.02 0.39 40.49 3.07
2727 2970 1.904865 CCATGGGCCGGATTGATGG 60.905 63.158 5.05 6.74 0.00 3.51
2728 2971 1.904865 CATGGGCCGGATTGATGGG 60.905 63.158 5.05 0.00 0.00 4.00
2731 2974 2.908940 GGCCGGATTGATGGGCTG 60.909 66.667 5.05 0.00 46.62 4.85
2732 2975 2.124151 GCCGGATTGATGGGCTGT 60.124 61.111 5.05 0.00 43.52 4.40
2733 2976 2.484062 GCCGGATTGATGGGCTGTG 61.484 63.158 5.05 0.00 43.52 3.66
2734 2977 1.224315 CCGGATTGATGGGCTGTGA 59.776 57.895 0.00 0.00 0.00 3.58
2735 2978 0.394216 CCGGATTGATGGGCTGTGAA 60.394 55.000 0.00 0.00 0.00 3.18
2736 2979 1.019673 CGGATTGATGGGCTGTGAAG 58.980 55.000 0.00 0.00 0.00 3.02
2737 2980 1.407299 CGGATTGATGGGCTGTGAAGA 60.407 52.381 0.00 0.00 0.00 2.87
2738 2981 2.019984 GGATTGATGGGCTGTGAAGAC 58.980 52.381 0.00 0.00 0.00 3.01
2739 2982 2.618816 GGATTGATGGGCTGTGAAGACA 60.619 50.000 0.00 0.00 0.00 3.41
2740 2983 2.885135 TTGATGGGCTGTGAAGACAT 57.115 45.000 0.00 0.00 0.00 3.06
2741 2984 2.118313 TGATGGGCTGTGAAGACATG 57.882 50.000 0.00 0.00 0.00 3.21
2742 2985 1.629861 TGATGGGCTGTGAAGACATGA 59.370 47.619 0.00 0.00 0.00 3.07
2743 2986 2.040145 TGATGGGCTGTGAAGACATGAA 59.960 45.455 0.00 0.00 0.00 2.57
2744 2987 2.189594 TGGGCTGTGAAGACATGAAG 57.810 50.000 0.00 0.00 0.00 3.02
2745 2988 1.271543 TGGGCTGTGAAGACATGAAGG 60.272 52.381 0.00 0.00 0.00 3.46
2746 2989 0.807496 GGCTGTGAAGACATGAAGGC 59.193 55.000 0.00 0.00 0.00 4.35
2747 2990 0.807496 GCTGTGAAGACATGAAGGCC 59.193 55.000 0.00 0.00 0.00 5.19
2748 2991 1.081892 CTGTGAAGACATGAAGGCCG 58.918 55.000 0.00 0.00 0.00 6.13
2749 2992 0.684535 TGTGAAGACATGAAGGCCGA 59.315 50.000 0.00 0.00 0.00 5.54
2750 2993 1.071542 TGTGAAGACATGAAGGCCGAA 59.928 47.619 0.00 0.00 0.00 4.30
2751 2994 1.734465 GTGAAGACATGAAGGCCGAAG 59.266 52.381 0.00 0.00 0.00 3.79
2752 2995 1.623311 TGAAGACATGAAGGCCGAAGA 59.377 47.619 0.00 0.00 0.00 2.87
2753 2996 2.003301 GAAGACATGAAGGCCGAAGAC 58.997 52.381 0.00 0.00 0.00 3.01
2754 2997 1.270907 AGACATGAAGGCCGAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
2755 2998 1.066573 AGACATGAAGGCCGAAGACTG 60.067 52.381 0.00 0.00 0.00 3.51
2756 2999 0.687354 ACATGAAGGCCGAAGACTGT 59.313 50.000 0.00 0.00 0.00 3.55
2757 3000 1.899814 ACATGAAGGCCGAAGACTGTA 59.100 47.619 0.00 0.00 0.00 2.74
2758 3001 2.271800 CATGAAGGCCGAAGACTGTAC 58.728 52.381 0.00 0.00 0.00 2.90
2759 3002 0.606604 TGAAGGCCGAAGACTGTACC 59.393 55.000 0.00 0.00 0.00 3.34
2760 3003 0.108281 GAAGGCCGAAGACTGTACCC 60.108 60.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.307396 CGTGTTTGCATATCTCTATGGTAAAGG 60.307 40.741 0.00 0.00 36.11 3.11
66 67 7.434307 GCAGCGGCTTTTCTTACGATATATATA 59.566 37.037 0.00 0.00 36.96 0.86
67 68 6.255887 GCAGCGGCTTTTCTTACGATATATAT 59.744 38.462 0.00 0.00 36.96 0.86
122 132 2.227089 GACCGTGCTGTACTCCCAGG 62.227 65.000 0.00 0.00 32.92 4.45
182 192 0.107017 CAGACCGGAAGCCATGGATT 60.107 55.000 16.76 16.76 0.00 3.01
183 193 0.982852 TCAGACCGGAAGCCATGGAT 60.983 55.000 18.40 6.18 0.00 3.41
191 201 8.144478 TCAAGATAAAGATAATCAGACCGGAAG 58.856 37.037 9.46 0.00 0.00 3.46
208 222 4.889409 GGGACATGGCAAGATCAAGATAAA 59.111 41.667 0.00 0.00 0.00 1.40
212 226 1.918262 AGGGACATGGCAAGATCAAGA 59.082 47.619 0.00 0.00 0.00 3.02
223 238 2.757099 GCCTTGGCAGGGACATGG 60.757 66.667 21.24 0.00 41.21 3.66
305 323 4.343814 TCGATGTACTGGCTGGATTGATAA 59.656 41.667 0.00 0.00 0.00 1.75
333 351 6.097981 AGAGGGAGTAATTAGTTTCCGGTAAG 59.902 42.308 0.00 0.00 0.00 2.34
358 379 4.873817 TCTCCGACAAGTATTTTCGAACA 58.126 39.130 0.00 0.00 34.62 3.18
363 384 6.737254 TCCATTTCTCCGACAAGTATTTTC 57.263 37.500 0.00 0.00 0.00 2.29
364 385 6.659242 ACATCCATTTCTCCGACAAGTATTTT 59.341 34.615 0.00 0.00 0.00 1.82
370 391 7.969536 ATAATACATCCATTTCTCCGACAAG 57.030 36.000 0.00 0.00 0.00 3.16
419 475 9.058174 TCCAAAATTACTTGTCGTAGAAAATGA 57.942 29.630 0.00 0.00 39.69 2.57
421 477 8.013378 CGTCCAAAATTACTTGTCGTAGAAAAT 58.987 33.333 0.00 0.00 39.69 1.82
423 479 6.700960 TCGTCCAAAATTACTTGTCGTAGAAA 59.299 34.615 0.00 0.00 39.69 2.52
425 481 5.771469 TCGTCCAAAATTACTTGTCGTAGA 58.229 37.500 0.00 0.00 0.00 2.59
426 482 6.364165 TCTTCGTCCAAAATTACTTGTCGTAG 59.636 38.462 0.00 0.00 0.00 3.51
427 483 6.215121 TCTTCGTCCAAAATTACTTGTCGTA 58.785 36.000 0.00 0.00 0.00 3.43
429 496 5.404366 TCTCTTCGTCCAAAATTACTTGTCG 59.596 40.000 0.00 0.00 0.00 4.35
438 505 9.720769 TTCTTTAGTATTCTCTTCGTCCAAAAT 57.279 29.630 0.00 0.00 0.00 1.82
441 508 7.893658 AGTTCTTTAGTATTCTCTTCGTCCAA 58.106 34.615 0.00 0.00 0.00 3.53
442 509 7.463961 AGTTCTTTAGTATTCTCTTCGTCCA 57.536 36.000 0.00 0.00 0.00 4.02
443 510 8.027771 TGAAGTTCTTTAGTATTCTCTTCGTCC 58.972 37.037 4.17 0.00 34.64 4.79
444 511 8.967552 TGAAGTTCTTTAGTATTCTCTTCGTC 57.032 34.615 4.17 0.00 34.64 4.20
473 543 6.911250 TGTTGACAGTCTTCAGTAAGGATA 57.089 37.500 1.31 0.00 33.22 2.59
484 554 6.658816 TGTAATTATGCCATGTTGACAGTCTT 59.341 34.615 1.31 0.00 0.00 3.01
497 567 5.654901 TCTAATGGGGTGTAATTATGCCA 57.345 39.130 9.52 0.00 0.00 4.92
519 589 2.140792 CGGGTGGGGTGCTAGCTAT 61.141 63.158 17.23 0.00 0.00 2.97
544 627 3.927758 TCTCGTCTCGTAGTCTCTTTGAG 59.072 47.826 0.00 0.00 0.00 3.02
545 628 3.922910 TCTCGTCTCGTAGTCTCTTTGA 58.077 45.455 0.00 0.00 0.00 2.69
546 629 4.868450 ATCTCGTCTCGTAGTCTCTTTG 57.132 45.455 0.00 0.00 0.00 2.77
555 638 2.159612 CGTCCAACAATCTCGTCTCGTA 60.160 50.000 0.00 0.00 0.00 3.43
624 709 1.095228 ACATGGCCGCCGATTTAGTG 61.095 55.000 4.58 0.00 0.00 2.74
628 713 2.045438 TCACATGGCCGCCGATTT 60.045 55.556 4.58 0.00 0.00 2.17
674 759 1.897802 CCTTTGATGGCTGCTTTTCCT 59.102 47.619 0.00 0.00 0.00 3.36
851 937 1.612442 AGATACTGGTGGCGTGGGT 60.612 57.895 0.00 0.00 0.00 4.51
936 1022 0.542333 GGGACTAACCAGAAGGGCTC 59.458 60.000 0.00 0.00 42.05 4.70
1002 1088 2.514013 GCAACGAGTATGTCCGCCG 61.514 63.158 0.00 0.00 0.00 6.46
1049 1135 2.967076 CCACATTCGATCGGCCGG 60.967 66.667 27.83 9.82 0.00 6.13
1050 1136 2.106131 TCCACATTCGATCGGCCG 59.894 61.111 22.12 22.12 0.00 6.13
1051 1137 2.237751 CGTCCACATTCGATCGGCC 61.238 63.158 16.41 0.00 0.00 6.13
1052 1138 2.237751 CCGTCCACATTCGATCGGC 61.238 63.158 16.41 0.00 0.00 5.54
1210 1296 1.821061 CGGTCAGGCAGAGGAACAGT 61.821 60.000 0.00 0.00 0.00 3.55
1431 1517 5.344207 AGCAGTTAACAAAACTGTCGATC 57.656 39.130 16.71 3.03 46.89 3.69
1434 1527 5.802064 TGTTAGCAGTTAACAAAACTGTCG 58.198 37.500 16.71 0.00 46.50 4.35
1475 1569 5.561532 CGCACCTGATTAAATAATGCTCTGG 60.562 44.000 0.00 0.00 0.00 3.86
1494 1588 1.155424 TGTTCTTTGACGGTCGCACC 61.155 55.000 3.34 0.00 34.05 5.01
1512 1606 6.472163 GGATAAATCCTTACGCACAAAATGTG 59.528 38.462 6.13 6.13 45.82 3.21
1594 1689 3.858503 GCAGAAGGAAATTTGTGGCTGTC 60.859 47.826 0.00 0.00 0.00 3.51
1598 1698 2.818130 TGCAGAAGGAAATTTGTGGC 57.182 45.000 0.00 0.00 0.00 5.01
1614 1714 0.998669 CGTATGCGTGAACAGATGCA 59.001 50.000 0.00 0.00 42.00 3.96
1623 1723 2.946990 TCTCTTATGTCCGTATGCGTGA 59.053 45.455 1.69 0.00 36.15 4.35
1626 1726 3.164358 CGATCTCTTATGTCCGTATGCG 58.836 50.000 0.00 0.00 37.95 4.73
1628 1728 4.083961 ACGACGATCTCTTATGTCCGTATG 60.084 45.833 0.00 0.00 0.00 2.39
1637 1737 2.541178 GCGTTGGACGACGATCTCTTAT 60.541 50.000 15.74 0.00 46.05 1.73
1639 1739 0.456312 GCGTTGGACGACGATCTCTT 60.456 55.000 15.74 0.00 46.05 2.85
1640 1740 1.136984 GCGTTGGACGACGATCTCT 59.863 57.895 15.74 0.00 46.05 3.10
1645 1745 2.068837 AAAATAGCGTTGGACGACGA 57.931 45.000 15.74 0.00 46.05 4.20
1647 1747 5.975939 AGAGTATAAAATAGCGTTGGACGAC 59.024 40.000 4.46 0.00 46.05 4.34
1650 1750 6.641723 GGAGAGAGTATAAAATAGCGTTGGAC 59.358 42.308 0.00 0.00 0.00 4.02
1687 1787 9.039870 CCAAATGCTGTGTCAAAAATACTTTTA 57.960 29.630 0.00 0.00 32.85 1.52
1688 1788 7.012232 CCCAAATGCTGTGTCAAAAATACTTTT 59.988 33.333 0.00 0.00 35.02 2.27
1689 1789 6.482973 CCCAAATGCTGTGTCAAAAATACTTT 59.517 34.615 0.00 0.00 0.00 2.66
1691 1791 5.070313 ACCCAAATGCTGTGTCAAAAATACT 59.930 36.000 0.00 0.00 0.00 2.12
1692 1792 5.296748 ACCCAAATGCTGTGTCAAAAATAC 58.703 37.500 0.00 0.00 0.00 1.89
1693 1793 5.543507 ACCCAAATGCTGTGTCAAAAATA 57.456 34.783 0.00 0.00 0.00 1.40
1694 1794 4.420522 ACCCAAATGCTGTGTCAAAAAT 57.579 36.364 0.00 0.00 0.00 1.82
1696 1796 5.344743 TTTACCCAAATGCTGTGTCAAAA 57.655 34.783 0.00 0.00 0.00 2.44
1697 1797 5.344743 TTTTACCCAAATGCTGTGTCAAA 57.655 34.783 0.00 0.00 0.00 2.69
1739 1839 9.140814 GCGTTTTTAATAAGAACGTATAAGAGC 57.859 33.333 23.28 6.74 45.60 4.09
1756 1856 9.891828 CATGCCATAATATAAGAGCGTTTTTAA 57.108 29.630 0.00 0.00 0.00 1.52
1757 1857 8.511321 CCATGCCATAATATAAGAGCGTTTTTA 58.489 33.333 0.00 0.00 0.00 1.52
1758 1858 7.370383 CCATGCCATAATATAAGAGCGTTTTT 58.630 34.615 0.00 0.00 0.00 1.94
1759 1859 6.071952 CCCATGCCATAATATAAGAGCGTTTT 60.072 38.462 0.00 0.00 0.00 2.43
1760 1860 5.415701 CCCATGCCATAATATAAGAGCGTTT 59.584 40.000 0.00 0.00 0.00 3.60
1761 1861 4.943705 CCCATGCCATAATATAAGAGCGTT 59.056 41.667 0.00 0.00 0.00 4.84
1762 1862 4.225042 TCCCATGCCATAATATAAGAGCGT 59.775 41.667 0.00 0.00 0.00 5.07
1763 1863 4.769688 TCCCATGCCATAATATAAGAGCG 58.230 43.478 0.00 0.00 0.00 5.03
1764 1864 5.104360 TCCTCCCATGCCATAATATAAGAGC 60.104 44.000 0.00 0.00 0.00 4.09
1765 1865 6.157645 ACTCCTCCCATGCCATAATATAAGAG 59.842 42.308 0.00 0.00 0.00 2.85
1766 1866 6.032039 ACTCCTCCCATGCCATAATATAAGA 58.968 40.000 0.00 0.00 0.00 2.10
1767 1867 6.319048 ACTCCTCCCATGCCATAATATAAG 57.681 41.667 0.00 0.00 0.00 1.73
1768 1868 9.689008 ATATACTCCTCCCATGCCATAATATAA 57.311 33.333 0.00 0.00 0.00 0.98
1779 1879 7.724490 TTGACAGATATATACTCCTCCCATG 57.276 40.000 0.00 0.00 0.00 3.66
1781 1881 9.837681 TTTATTGACAGATATATACTCCTCCCA 57.162 33.333 0.00 0.00 0.00 4.37
1879 1995 5.295787 TCGGGCATGTAAAAACTAAGCATAG 59.704 40.000 0.00 0.00 35.14 2.23
1979 2100 1.671054 CGGCGACACCACCTTGATT 60.671 57.895 0.00 0.00 39.03 2.57
2106 2227 0.603707 CATGCCATCCGTCCGCTATT 60.604 55.000 0.00 0.00 0.00 1.73
2120 2241 0.099436 GACGCAAGAACCATCATGCC 59.901 55.000 1.05 0.00 45.17 4.40
2129 2250 1.144969 TTGGATGTCGACGCAAGAAC 58.855 50.000 11.62 0.00 43.62 3.01
2215 2336 2.241685 AGAGAGAAAGGCCATGCTCAAT 59.758 45.455 18.30 3.00 0.00 2.57
2222 2343 2.768527 TGATCGAAGAGAGAAAGGCCAT 59.231 45.455 5.01 0.00 43.63 4.40
2406 2649 1.492993 GGAGGTGGAGAGGGCAAAGT 61.493 60.000 0.00 0.00 0.00 2.66
2456 2699 4.467107 GGAGGCGAGGGAGGAGGT 62.467 72.222 0.00 0.00 0.00 3.85
2512 2755 3.066190 CGGGGGAGTCAGCGTACA 61.066 66.667 0.00 0.00 0.00 2.90
2518 2761 1.830408 CCTAGAGCGGGGGAGTCAG 60.830 68.421 0.00 0.00 0.00 3.51
2519 2762 2.279073 CCTAGAGCGGGGGAGTCA 59.721 66.667 0.00 0.00 0.00 3.41
2545 2788 3.943034 TTGCCCGCACGTTGTTCG 61.943 61.111 0.00 0.00 46.00 3.95
2594 2837 2.579684 ATTCTTCCCCGCAGCTCGTC 62.580 60.000 5.15 0.00 36.19 4.20
2606 2849 3.549221 CGCTCTTCTCCGAGTATTCTTCC 60.549 52.174 0.00 0.00 33.55 3.46
2631 2874 3.439932 CATCATCTATGTTAACGCGGC 57.560 47.619 12.47 0.00 0.00 6.53
2644 2887 4.511527 CTCAACAGTGCCTTACATCATCT 58.488 43.478 0.00 0.00 0.00 2.90
2660 2903 0.191064 AGTCCAGGACTCCCTCAACA 59.809 55.000 17.31 0.00 38.71 3.33
2663 2906 1.007238 CCTTAGTCCAGGACTCCCTCA 59.993 57.143 26.42 5.02 42.40 3.86
2664 2907 1.689892 CCCTTAGTCCAGGACTCCCTC 60.690 61.905 26.42 0.00 42.40 4.30
2665 2908 0.340208 CCCTTAGTCCAGGACTCCCT 59.660 60.000 26.42 4.72 42.40 4.20
2666 2909 0.691413 CCCCTTAGTCCAGGACTCCC 60.691 65.000 26.42 0.00 42.40 4.30
2667 2910 0.042881 ACCCCTTAGTCCAGGACTCC 59.957 60.000 26.42 0.00 42.40 3.85
2668 2911 1.487300 GACCCCTTAGTCCAGGACTC 58.513 60.000 26.42 6.18 42.40 3.36
2669 2912 3.713867 GACCCCTTAGTCCAGGACT 57.286 57.895 25.92 25.92 45.54 3.85
2676 2919 2.433146 GCCCGAGGACCCCTTAGTC 61.433 68.421 0.00 0.00 31.76 2.59
2677 2920 2.365237 GCCCGAGGACCCCTTAGT 60.365 66.667 0.00 0.00 31.76 2.24
2678 2921 3.537874 CGCCCGAGGACCCCTTAG 61.538 72.222 0.00 0.00 31.76 2.18
2679 2922 3.910784 AACGCCCGAGGACCCCTTA 62.911 63.158 0.00 0.00 31.76 2.69
2693 2936 0.814010 ATGGATAACAGGCCGAACGC 60.814 55.000 0.00 0.00 0.00 4.84
2694 2937 0.937304 CATGGATAACAGGCCGAACG 59.063 55.000 0.00 0.00 0.00 3.95
2695 2938 1.308998 CCATGGATAACAGGCCGAAC 58.691 55.000 5.56 0.00 0.00 3.95
2696 2939 0.182537 CCCATGGATAACAGGCCGAA 59.817 55.000 15.22 0.00 0.00 4.30
2697 2940 1.836391 CCCATGGATAACAGGCCGA 59.164 57.895 15.22 0.00 0.00 5.54
2698 2941 1.898574 GCCCATGGATAACAGGCCG 60.899 63.158 15.22 0.00 35.06 6.13
2699 2942 4.181051 GCCCATGGATAACAGGCC 57.819 61.111 15.22 0.00 35.06 5.19
2700 2943 1.898574 CGGCCCATGGATAACAGGC 60.899 63.158 15.22 5.76 39.15 4.85
2701 2944 1.228245 CCGGCCCATGGATAACAGG 60.228 63.158 15.22 6.08 0.00 4.00
2702 2945 0.401738 ATCCGGCCCATGGATAACAG 59.598 55.000 15.22 0.00 44.38 3.16
2703 2946 0.850100 AATCCGGCCCATGGATAACA 59.150 50.000 15.22 0.00 45.46 2.41
2704 2947 1.202879 TCAATCCGGCCCATGGATAAC 60.203 52.381 15.22 0.00 45.46 1.89
2705 2948 1.144691 TCAATCCGGCCCATGGATAA 58.855 50.000 15.22 1.02 45.46 1.75
2706 2949 1.004628 CATCAATCCGGCCCATGGATA 59.995 52.381 15.22 0.00 45.46 2.59
2708 2951 1.151221 CATCAATCCGGCCCATGGA 59.849 57.895 15.22 0.00 40.46 3.41
2709 2952 1.904865 CCATCAATCCGGCCCATGG 60.905 63.158 4.14 4.14 0.00 3.66
2710 2953 1.904865 CCCATCAATCCGGCCCATG 60.905 63.158 0.00 0.00 0.00 3.66
2711 2954 2.522503 CCCATCAATCCGGCCCAT 59.477 61.111 0.00 0.00 0.00 4.00
2712 2955 4.521292 GCCCATCAATCCGGCCCA 62.521 66.667 0.00 0.00 36.63 5.36
2713 2956 4.209866 AGCCCATCAATCCGGCCC 62.210 66.667 0.00 0.00 44.13 5.80
2714 2957 2.908940 CAGCCCATCAATCCGGCC 60.909 66.667 0.00 0.00 44.13 6.13
2715 2958 2.124151 ACAGCCCATCAATCCGGC 60.124 61.111 0.00 0.00 43.35 6.13
2716 2959 0.394216 TTCACAGCCCATCAATCCGG 60.394 55.000 0.00 0.00 0.00 5.14
2717 2960 1.019673 CTTCACAGCCCATCAATCCG 58.980 55.000 0.00 0.00 0.00 4.18
2718 2961 2.019984 GTCTTCACAGCCCATCAATCC 58.980 52.381 0.00 0.00 0.00 3.01
2719 2962 2.715046 TGTCTTCACAGCCCATCAATC 58.285 47.619 0.00 0.00 0.00 2.67
2720 2963 2.885135 TGTCTTCACAGCCCATCAAT 57.115 45.000 0.00 0.00 0.00 2.57
2721 2964 2.040145 TCATGTCTTCACAGCCCATCAA 59.960 45.455 0.00 0.00 35.41 2.57
2722 2965 1.629861 TCATGTCTTCACAGCCCATCA 59.370 47.619 0.00 0.00 35.41 3.07
2723 2966 2.408271 TCATGTCTTCACAGCCCATC 57.592 50.000 0.00 0.00 35.41 3.51
2724 2967 2.619849 CCTTCATGTCTTCACAGCCCAT 60.620 50.000 0.00 0.00 35.41 4.00
2725 2968 1.271543 CCTTCATGTCTTCACAGCCCA 60.272 52.381 0.00 0.00 35.41 5.36
2726 2969 1.457346 CCTTCATGTCTTCACAGCCC 58.543 55.000 0.00 0.00 35.41 5.19
2727 2970 0.807496 GCCTTCATGTCTTCACAGCC 59.193 55.000 0.00 0.00 35.41 4.85
2728 2971 0.807496 GGCCTTCATGTCTTCACAGC 59.193 55.000 0.00 0.00 35.41 4.40
2729 2972 1.081892 CGGCCTTCATGTCTTCACAG 58.918 55.000 0.00 0.00 35.41 3.66
2730 2973 0.684535 TCGGCCTTCATGTCTTCACA 59.315 50.000 0.00 0.00 36.78 3.58
2731 2974 1.734465 CTTCGGCCTTCATGTCTTCAC 59.266 52.381 0.00 0.00 0.00 3.18
2732 2975 1.623311 TCTTCGGCCTTCATGTCTTCA 59.377 47.619 0.00 0.00 0.00 3.02
2733 2976 2.003301 GTCTTCGGCCTTCATGTCTTC 58.997 52.381 0.00 0.00 0.00 2.87
2734 2977 1.625818 AGTCTTCGGCCTTCATGTCTT 59.374 47.619 0.00 0.00 0.00 3.01
2735 2978 1.066573 CAGTCTTCGGCCTTCATGTCT 60.067 52.381 0.00 0.00 0.00 3.41
2736 2979 1.338200 ACAGTCTTCGGCCTTCATGTC 60.338 52.381 0.00 0.00 0.00 3.06
2737 2980 0.687354 ACAGTCTTCGGCCTTCATGT 59.313 50.000 0.00 0.00 0.00 3.21
2738 2981 2.271800 GTACAGTCTTCGGCCTTCATG 58.728 52.381 0.00 0.00 0.00 3.07
2739 2982 1.207329 GGTACAGTCTTCGGCCTTCAT 59.793 52.381 0.00 0.00 0.00 2.57
2740 2983 0.606604 GGTACAGTCTTCGGCCTTCA 59.393 55.000 0.00 0.00 0.00 3.02
2741 2984 0.108281 GGGTACAGTCTTCGGCCTTC 60.108 60.000 0.00 0.00 0.00 3.46
2742 2985 1.980844 GGGTACAGTCTTCGGCCTT 59.019 57.895 0.00 0.00 0.00 4.35
2743 2986 3.709567 GGGTACAGTCTTCGGCCT 58.290 61.111 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.